Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419650 | XP_013461059.1 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 2.76e-137 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419650 | sp|Q9SB04|ARR5_ARATH | 63.736 | 182 | 59 | 3 | 5 | 180 | 2 | 182 | 1.95e-74 | 225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419650 | A0A072V140 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.32e-137 | 392 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0419650 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0371440 | Msa0419650 | 0.857679 | 1.384706e-62 | -8.615850e-47 |
| Msa0419650 | Msa0450200 | 0.889372 | 2.569959e-73 | -8.615850e-47 |
| Msa0419650 | Msa0511640 | 0.935779 | 4.951954e-97 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419650 | MtrunA17_Chr3g0118211 | 97.015 | 201 | 5 | 1 | 1 | 201 | 1 | 200 | 1.31e-138 | 385 |
| Msa0419650 | MtrunA17_Chr4g0059571 | 68.519 | 216 | 51 | 6 | 1 | 201 | 1 | 214 | 1.49e-87 | 256 |
| Msa0419650 | MtrunA17_Chr1g0170741 | 61.290 | 155 | 53 | 3 | 22 | 173 | 7 | 157 | 2.11e-58 | 182 |
| Msa0419650 | MtrunA17_Chr5g0414931 | 65.035 | 143 | 45 | 2 | 17 | 155 | 10 | 151 | 1.31e-57 | 181 |
| Msa0419650 | MtrunA17_Chr7g0256551 | 52.761 | 163 | 67 | 3 | 18 | 171 | 4 | 165 | 9.78e-53 | 169 |
| Msa0419650 | MtrunA17_Chr3g0082861 | 51.829 | 164 | 69 | 3 | 20 | 174 | 1 | 163 | 2.21e-50 | 160 |
| Msa0419650 | MtrunA17_Chr3g0128691 | 58.647 | 133 | 50 | 2 | 24 | 153 | 19 | 149 | 1.08e-49 | 158 |
| Msa0419650 | MtrunA17_Chr8g0352871 | 54.667 | 150 | 57 | 3 | 18 | 158 | 4 | 151 | 8.59e-49 | 157 |
| Msa0419650 | MtrunA17_Chr3g0124861 | 50.667 | 150 | 54 | 2 | 22 | 153 | 21 | 168 | 2.75e-46 | 152 |
| Msa0419650 | MtrunA17_Chr4g0021731 | 54.651 | 86 | 39 | 0 | 15 | 100 | 3 | 88 | 1.55e-25 | 94.7 |
| Msa0419650 | MtrunA17_Chr3g0127941 | 28.859 | 149 | 96 | 3 | 23 | 171 | 56 | 194 | 1.18e-13 | 68.9 |
| Msa0419650 | MtrunA17_Chr1g0149851 | 29.114 | 158 | 96 | 4 | 23 | 180 | 9 | 150 | 3.38e-12 | 64.7 |
| Msa0419650 | MtrunA17_Chr4g0030271 | 30.597 | 134 | 83 | 2 | 20 | 153 | 86 | 209 | 5.58e-12 | 63.9 |
| Msa0419650 | MtrunA17_Chr8g0345901 | 28.682 | 129 | 82 | 2 | 25 | 153 | 38 | 156 | 6.94e-12 | 63.5 |
| Msa0419650 | MtrunA17_Chr7g0275401 | 29.530 | 149 | 85 | 3 | 23 | 171 | 9 | 137 | 2.10e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419650 | AT3G48100.1 | 63.736 | 182 | 59 | 3 | 5 | 180 | 2 | 182 | 1.98e-75 | 225 |
| Msa0419650 | AT1G74890.1 | 75.333 | 150 | 30 | 3 | 22 | 167 | 17 | 163 | 1.11e-71 | 216 |
| Msa0419650 | AT5G62920.1 | 74.483 | 145 | 35 | 2 | 23 | 167 | 25 | 167 | 1.57e-70 | 213 |
| Msa0419650 | AT1G19050.1 | 67.089 | 158 | 49 | 2 | 3 | 158 | 2 | 158 | 3.48e-69 | 210 |
| Msa0419650 | AT1G59940.1 | 62.857 | 175 | 45 | 5 | 1 | 158 | 1 | 172 | 1.94e-66 | 204 |
| Msa0419650 | AT1G59940.2 | 62.857 | 175 | 45 | 5 | 1 | 158 | 93 | 264 | 3.86e-65 | 204 |
| Msa0419650 | AT1G10470.3 | 66.443 | 149 | 49 | 1 | 14 | 162 | 11 | 158 | 2.13e-63 | 196 |
| Msa0419650 | AT1G10470.1 | 72.727 | 132 | 35 | 1 | 22 | 153 | 33 | 163 | 3.63e-63 | 196 |
| Msa0419650 | AT2G41310.1 | 56.667 | 150 | 56 | 3 | 21 | 162 | 7 | 155 | 3.92e-53 | 170 |
| Msa0419650 | AT3G57040.2 | 57.534 | 146 | 51 | 2 | 18 | 153 | 4 | 148 | 4.16e-53 | 170 |
| Msa0419650 | AT3G57040.1 | 57.534 | 146 | 51 | 2 | 18 | 153 | 4 | 148 | 4.16e-53 | 170 |
| Msa0419650 | AT2G40670.2 | 59.559 | 136 | 50 | 2 | 22 | 153 | 28 | 162 | 5.06e-53 | 167 |
| Msa0419650 | AT3G56380.2 | 58.647 | 133 | 54 | 1 | 22 | 153 | 19 | 151 | 1.09e-52 | 166 |
| Msa0419650 | AT2G40670.1 | 58.824 | 136 | 50 | 3 | 22 | 153 | 28 | 161 | 3.00e-50 | 160 |
| Msa0419650 | AT3G56380.1 | 57.895 | 133 | 54 | 2 | 22 | 153 | 19 | 150 | 6.08e-50 | 159 |
| Msa0419650 | AT1G10470.2 | 61.111 | 72 | 28 | 0 | 91 | 162 | 25 | 96 | 8.06e-23 | 90.9 |
| Msa0419650 | AT2G07440.1 | 52.941 | 68 | 32 | 0 | 95 | 162 | 2 | 69 | 1.16e-16 | 73.6 |
| Msa0419650 | AT5G07210.2 | 30.508 | 177 | 97 | 6 | 1 | 175 | 1 | 153 | 6.84e-15 | 72.8 |
| Msa0419650 | AT5G24470.1 | 29.771 | 131 | 82 | 3 | 23 | 153 | 50 | 170 | 2.61e-12 | 65.5 |
| Msa0419650 | AT1G67710.1 | 30.137 | 146 | 89 | 3 | 14 | 159 | 2 | 134 | 1.08e-11 | 63.5 |
| Msa0419650 | AT2G46790.3 | 27.481 | 131 | 85 | 2 | 23 | 153 | 37 | 157 | 1.83e-11 | 62.8 |
| Msa0419650 | AT2G46790.1 | 27.481 | 131 | 85 | 2 | 23 | 153 | 37 | 157 | 2.14e-11 | 62.4 |
| Msa0419650 | AT5G60100.7 | 31.343 | 134 | 82 | 3 | 20 | 153 | 61 | 184 | 6.77e-11 | 60.8 |
| Msa0419650 | AT5G60100.6 | 31.343 | 134 | 82 | 3 | 20 | 153 | 61 | 184 | 6.77e-11 | 60.8 |
| Msa0419650 | AT5G60100.4 | 31.343 | 134 | 82 | 3 | 20 | 153 | 61 | 184 | 6.77e-11 | 60.8 |
| Msa0419650 | AT5G60100.2 | 31.343 | 134 | 82 | 3 | 20 | 153 | 61 | 184 | 7.32e-11 | 60.8 |
Find 62 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAGATTACACTGTAAAT+AGG | 0.246511 | 3_2:-67790562 | None:intergenic |
| TTAGAATGATGTTAAAGATT+TGG | 0.295608 | 3_2:+67790535 | Msa0419650:three_prime_UTR |
| AGAAGATTACACTGTAAATA+GGG | 0.323672 | 3_2:-67790561 | None:intergenic |
| CAAGATCTTACCTATCAATT+CGG | 0.347926 | 3_2:-67788893 | None:intergenic |
| TTTAGATTGGAATTGTAGTT+AGG | 0.349100 | 3_2:-67790647 | None:intergenic |
| TGAATTGCTCAAGAAGATTA+AGG | 0.356380 | 3_2:+67788659 | Msa0419650:CDS |
| ACTAGAGCTTTACAGTATCT+TGG | 0.363036 | 3_2:+67788434 | Msa0419650:CDS |
| AGCTTTACAGTATCTTGGTT+TGG | 0.366392 | 3_2:+67788439 | Msa0419650:CDS |
| GATGGTGACACGAGTTCTAT+TGG | 0.385104 | 3_2:+67788461 | Msa0419650:CDS |
| CTACTGCTGGTGATGTTCTC+AGG | 0.387823 | 3_2:+67788151 | Msa0419650:CDS |
| AATGGCAAAGTGTTATATAA+AGG | 0.400670 | 3_2:-67788016 | None:intergenic |
| TGTTCTCAGGCAGAGTTTAC+CGG | 0.414947 | 3_2:+67788164 | Msa0419650:CDS |
| ATGAAGAAGAAGTTTGTTGA+TGG | 0.417706 | 3_2:-67788112 | None:intergenic |
| ATTAACTAAACCCTCCCATT+TGG | 0.422471 | 3_2:+67790477 | Msa0419650:three_prime_UTR |
| TTCACATCTGCCAACTTGAC+AGG | 0.430476 | 3_2:-67790082 | None:intergenic |
| ATGAATCAATGGTTATAGTC+TGG | 0.434730 | 3_2:-67790266 | None:intergenic |
| CTGACAATGAGTATAGGATT+AGG | 0.443189 | 3_2:+67790372 | Msa0419650:three_prime_UTR |
| ACATCTTGACCCGAATTGAT+AGG | 0.448548 | 3_2:+67788883 | Msa0419650:CDS |
| ATGACAGATTATTCTATGCC+TGG | 0.452458 | 3_2:+67788624 | Msa0419650:CDS |
| TATTCTATGCCTGGGATGAC+AGG | 0.453139 | 3_2:+67788633 | Msa0419650:CDS |
| ATAACCATTGATTCATTTAG+CGG | 0.455397 | 3_2:+67790273 | Msa0419650:exon |
| CTTAAATTCACTTCTTGCAA+AGG | 0.463478 | 3_2:+67788270 | Msa0419650:CDS |
| TTGAAGTAGACCCTGCCAAA+TGG | 0.471084 | 3_2:-67790492 | None:intergenic |
| ACTAAACCCTCCCATTTGGC+AGG | 0.473859 | 3_2:+67790481 | Msa0419650:three_prime_UTR |
| ATTGACAGTTGCTTGGAAGA+AGG | 0.475916 | 3_2:+67790037 | Msa0419650:intron |
| ACACCAGCACCACTTACTTC+CGG | 0.479536 | 3_2:-67788183 | None:intergenic |
| TTACAGTATCTTGGTTTGGA+TGG | 0.481557 | 3_2:+67788443 | Msa0419650:CDS |
| TGAAGTAGACCCTGCCAAAT+GGG | 0.496813 | 3_2:-67790491 | None:intergenic |
| AAGATCTTACCTATCAATTC+GGG | 0.507592 | 3_2:-67788892 | None:intergenic |
| TTTGTTCATTGACAGTTGCT+TGG | 0.513588 | 3_2:+67790030 | Msa0419650:intron |
| AGAGGTGAAGGAAAGAAAGT+CGG | 0.518178 | 3_2:+67790127 | Msa0419650:CDS |
| AAGAGAAAGAGAGAGAGATA+CGG | 0.521048 | 3_2:-67787990 | None:intergenic |
| GGCACCGCTAAATGAATCAA+TGG | 0.523340 | 3_2:-67790277 | None:intergenic |
| TTACCGGAAGTAAGTGGTGC+TGG | 0.532656 | 3_2:+67788180 | Msa0419650:CDS |
| GAAGTAAGTGGTGCTGGTGT+TGG | 0.533059 | 3_2:+67788186 | Msa0419650:CDS |
| AAATTGCTGACAATGAGTAT+AGG | 0.533650 | 3_2:+67790366 | Msa0419650:three_prime_UTR |
| TTGATCGCAAAGTCATTGAA+AGG | 0.535022 | 3_2:+67788244 | Msa0419650:CDS |
| AATTCATATCCTGTCATCCC+AGG | 0.536075 | 3_2:-67788642 | None:intergenic |
| TTGTATTTCATCTCTATCAA+CGG | 0.543618 | 3_2:+67790186 | Msa0419650:CDS |
| TGACAGATTATTCTATGCCT+GGG | 0.547632 | 3_2:+67788625 | Msa0419650:CDS |
| TCAGAGGACATAACCACCAC+TGG | 0.556667 | 3_2:-67788858 | None:intergenic |
| TCTATTGAAACCTGTCAAGT+TGG | 0.561378 | 3_2:+67790072 | Msa0419650:CDS |
| TTCTTTGACGACATTGCAGA+CGG | 0.571495 | 3_2:-67790241 | None:intergenic |
| GGTGAAGGAAAGAAAGTCGG+AGG | 0.571633 | 3_2:+67790130 | Msa0419650:CDS |
| AGAGTTGCACGTTCTTGCAG+TGG | 0.580799 | 3_2:+67788209 | Msa0419650:CDS |
| GCAGTTACTGTTGTTGAGAG+TGG | 0.584140 | 3_2:+67788410 | Msa0419650:intron |
| GAAGATTACACTGTAAATAG+GGG | 0.585833 | 3_2:-67790560 | None:intergenic |
| TAGGATTAGGACTGATGAAG+AGG | 0.592905 | 3_2:+67790385 | Msa0419650:three_prime_UTR |
| ATTTAGAGAAATTCCAGTGG+TGG | 0.593101 | 3_2:+67788845 | Msa0419650:CDS |
| GATTTCATAATGAGAGGTGA+AGG | 0.593144 | 3_2:+67790115 | Msa0419650:CDS |
| TTAACAGATTTCATAATGAG+AGG | 0.593540 | 3_2:+67790109 | Msa0419650:CDS |
| GACATTGCAGACGGTGACAA+TGG | 0.595350 | 3_2:-67790232 | None:intergenic |
| CAGAGTTTACCGGAAGTAAG+TGG | 0.596307 | 3_2:+67788174 | Msa0419650:CDS |
| TTGCTTGGAAGAAGGAGCAG+AGG | 0.596704 | 3_2:+67790045 | Msa0419650:CDS |
| CTAAACCCTCCCATTTGGCA+GGG | 0.601382 | 3_2:+67790482 | Msa0419650:three_prime_UTR |
| AATATGGTTACAGGGTGTGA+AGG | 0.609461 | 3_2:+67788590 | Msa0419650:intron |
| GTAGACCCTGCCAAATGGGA+GGG | 0.631769 | 3_2:-67790487 | None:intergenic |
| AGTAGACCCTGCCAAATGGG+AGG | 0.633441 | 3_2:-67790488 | None:intergenic |
| AGAAAGAGAGAGAGATACGG+AGG | 0.646002 | 3_2:-67787987 | None:intergenic |
| AAGATTACACTGTAAATAGG+GGG | 0.670911 | 3_2:-67790559 | None:intergenic |
| TGTATTTAGAGAAATTCCAG+TGG | 0.707997 | 3_2:+67788842 | Msa0419650:CDS |
| TCGGGTCAAGATGTTCTCAG+AGG | 0.723155 | 3_2:-67788874 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTGTTG+AGG | + | chr3_2:67788523-67788542 | Msa0419650:intron | 10.0% |
| !! | AAATACATCAAAAAAACAAA+GGG | - | chr3_2:67788320-67788339 | None:intergenic | 15.0% |
| !! | AAAATACATCAAAAAAACAA+AGG | - | chr3_2:67788321-67788340 | None:intergenic | 15.0% |
| !!! | CTTGTTTTTTTTTTTTTTTG+TGG | + | chr3_2:67788388-67788407 | Msa0419650:intron | 15.0% |
| !!! | ATTAAAGACAAGTATATTTT+TGG | + | chr3_2:67789084-67789103 | Msa0419650:intron | 15.0% |
| !!! | TTTTTTTAAGCAAAAAATCG+AGG | - | chr3_2:67787942-67787961 | None:intergenic | 20.0% |
| !!! | TTTTTGAAGAAGAAGAAAAA+TGG | - | chr3_2:67788037-67788056 | None:intergenic | 20.0% |
| !!! | GTATTTTTAGTTTTTGTGTT+TGG | + | chr3_2:67788545-67788564 | Msa0419650:intron | 20.0% |
| !! | AAACAATACTAATTCAAAAG+AGG | - | chr3_2:67788932-67788951 | None:intergenic | 20.0% |
| !!! | GATTAGTTATAGTTACATAT+TGG | + | chr3_2:67789004-67789023 | Msa0419650:intron | 20.0% |
| !! | AAAAAATAAAAGAATTGCGT+AGG | - | chr3_2:67789048-67789067 | None:intergenic | 20.0% |
| !! | GTCTTTAATACAAAAACTAA+AGG | - | chr3_2:67789073-67789092 | None:intergenic | 20.0% |
| !! | AAAGATCTCAATATCTAATT+AGG | + | chr3_2:67789325-67789344 | Msa0419650:intron | 20.0% |
| !! | ATAATTTCAGGAATAAAAGT+AGG | - | chr3_2:67789848-67789867 | None:intergenic | 20.0% |
| !! | ATGATCAATAAATATGAAAC+AGG | - | chr3_2:67790005-67790024 | None:intergenic | 20.0% |
| !! | AAATATCTCAAAAAAGAAGT+CGG | + | chr3_2:67790155-67790174 | Msa0419650:CDS | 20.0% |
| !! | TTAGAATGATGTTAAAGATT+TGG | + | chr3_2:67790535-67790554 | Msa0419650:three_prime_UTR | 20.0% |
| !!! | TCTTATTTTACTGTCTTTTT+TGG | + | chr3_2:67790581-67790600 | Msa0419650:three_prime_UTR | 20.0% |
| !! | AATGGCAAAGTGTTATATAA+AGG | - | chr3_2:67788019-67788038 | None:intergenic | 25.0% |
| !!! | GATTGGATTTTAATGGTTTT+TGG | + | chr3_2:67788363-67788382 | Msa0419650:intron | 25.0% |
| !! | GTAAGCAAAGTTTCTAATTT+TGG | + | chr3_2:67788491-67788510 | Msa0419650:intron | 25.0% |
| !!! | TGTTGTTGTTTTGATGAATA+TGG | + | chr3_2:67788574-67788593 | Msa0419650:intron | 25.0% |
| !! | TTTTGATGAATATGGTTACA+GGG | + | chr3_2:67788582-67788601 | Msa0419650:intron | 25.0% |
| !!! | TTATTTCTGTTAATTTCAGC+AGG | + | chr3_2:67788812-67788831 | Msa0419650:intron | 25.0% |
| ! | AATCTCAGCTAAAAAACAAT+AGG | - | chr3_2:67788963-67788982 | None:intergenic | 25.0% |
| ! | ATCCATTTGTGAAATATGTA+TGG | + | chr3_2:67789136-67789155 | Msa0419650:intron | 25.0% |
| ! | TACCATACATATTTCACAAA+TGG | - | chr3_2:67789141-67789160 | None:intergenic | 25.0% |
| ! | TGTGAAATATGTATGGTATA+TGG | + | chr3_2:67789143-67789162 | Msa0419650:intron | 25.0% |
| ! | GTGAAATATGTATGGTATAT+GGG | + | chr3_2:67789144-67789163 | Msa0419650:intron | 25.0% |
| ! | CTCAATATCTAATTAGGTTT+AGG | + | chr3_2:67789331-67789350 | Msa0419650:intron | 25.0% |
| ! | AAGTAAAGGGATTTATTGTT+TGG | - | chr3_2:67789530-67789549 | None:intergenic | 25.0% |
| !!! | TCATTTTAGTGAAAGGATTT+TGG | - | chr3_2:67789570-67789589 | None:intergenic | 25.0% |
| ! | AATCCTTTCACTAAAATGAT+AGG | + | chr3_2:67789571-67789590 | Msa0419650:intron | 25.0% |
| !!! | TAACCTATCATTTTAGTGAA+AGG | - | chr3_2:67789577-67789596 | None:intergenic | 25.0% |
| ! | TTGCAAAATCTTTCTACTAA+TGG | + | chr3_2:67789605-67789624 | Msa0419650:intron | 25.0% |
| ! | TAACATGGTGATATTATTGA+GGG | - | chr3_2:67789642-67789661 | None:intergenic | 25.0% |
| ! | TATAATTGCCACACAATTAT+AGG | + | chr3_2:67789799-67789818 | Msa0419650:intron | 25.0% |
| ! | TGATAAAACCTATAATTGTG+TGG | - | chr3_2:67789810-67789829 | None:intergenic | 25.0% |
| ! | TTAACAGATTTCATAATGAG+AGG | + | chr3_2:67790109-67790128 | Msa0419650:CDS | 25.0% |
| ! | TTGTATTTCATCTCTATCAA+CGG | + | chr3_2:67790186-67790205 | Msa0419650:CDS | 25.0% |
| !!! | ATAACCATTGATTCATTTAG+CGG | + | chr3_2:67790273-67790292 | Msa0419650:exon | 25.0% |
| ! | AGAAGATTACACTGTAAATA+GGG | - | chr3_2:67790564-67790583 | None:intergenic | 25.0% |
| ! | AAGAAGATTACACTGTAAAT+AGG | - | chr3_2:67790565-67790584 | None:intergenic | 25.0% |
| ! | TTTAGATTGGAATTGTAGTT+AGG | - | chr3_2:67790650-67790669 | None:intergenic | 25.0% |
| !! | ATGAAGAAGAAGTTTGTTGA+TGG | - | chr3_2:67788115-67788134 | None:intergenic | 30.0% |
| CTTAAATTCACTTCTTGCAA+AGG | + | chr3_2:67788270-67788289 | Msa0419650:CDS | 30.0% | |
| TCTTGTATTCTTGATTCACT+TGG | + | chr3_2:67788341-67788360 | Msa0419650:intron | 30.0% | |
| TATTCTTGATTCACTTGGAT+TGG | + | chr3_2:67788346-67788365 | Msa0419650:intron | 30.0% | |
| !! | TCACTTGGATTGGATTTTAA+TGG | + | chr3_2:67788356-67788375 | Msa0419650:intron | 30.0% |
| !! | GTTTTGATGAATATGGTTAC+AGG | + | chr3_2:67788581-67788600 | Msa0419650:intron | 30.0% |
| TGAATTGCTCAAGAAGATTA+AGG | + | chr3_2:67788659-67788678 | Msa0419650:CDS | 30.0% | |
| ! | GATGTATGTATTGATGAAAG+AGG | + | chr3_2:67788725-67788744 | Msa0419650:intron | 30.0% |
| CACTACAATCTAATCTAATC+AGG | - | chr3_2:67788757-67788776 | None:intergenic | 30.0% | |
| TGTATTTAGAGAAATTCCAG+TGG | + | chr3_2:67788842-67788861 | Msa0419650:CDS | 30.0% | |
| AAGATCTTACCTATCAATTC+GGG | - | chr3_2:67788895-67788914 | None:intergenic | 30.0% | |
| CAAGATCTTACCTATCAATT+CGG | - | chr3_2:67788896-67788915 | None:intergenic | 30.0% | |
| ATTTCATGTCTAGACTAGAT+GGG | - | chr3_2:67789118-67789137 | None:intergenic | 30.0% | |
| TAGAATAAGCAAAAACGTGT+GGG | - | chr3_2:67789179-67789198 | None:intergenic | 30.0% | |
| CAAATCCAAAAATACATGGT+GGG | + | chr3_2:67789251-67789270 | Msa0419650:intron | 30.0% | |
| ATATCTAATTAGGTTTAGGC+TGG | + | chr3_2:67789335-67789354 | Msa0419650:intron | 30.0% | |
| CATTAAGCCTTCTTAATGAT+TGG | + | chr3_2:67789389-67789408 | Msa0419650:intron | 30.0% | |
| CATATTGCCAATCATTAAGA+AGG | - | chr3_2:67789399-67789418 | None:intergenic | 30.0% | |
| ! | TTTTTACCAATTTACCACCA+AGG | + | chr3_2:67789466-67789485 | Msa0419650:intron | 30.0% |
| ACAAAAATACAACATAGCCT+TGG | - | chr3_2:67789486-67789505 | None:intergenic | 30.0% | |
| ! | GTGTTGGTAAGAAAAGTAAA+GGG | - | chr3_2:67789543-67789562 | None:intergenic | 30.0% |
| ! | TGTGTTGGTAAGAAAAGTAA+AGG | - | chr3_2:67789544-67789563 | None:intergenic | 30.0% |
| !! | TTACTTTTCTTACCAACACA+TGG | + | chr3_2:67789544-67789563 | Msa0419650:intron | 30.0% |
| CTAACATGGTGATATTATTG+AGG | - | chr3_2:67789643-67789662 | None:intergenic | 30.0% | |
| ! | ATGAAATCCATTTTCCTACA+AGG | + | chr3_2:67789743-67789762 | Msa0419650:intron | 30.0% |
| TGGTGTTTGTCAATAATTTC+AGG | - | chr3_2:67789860-67789879 | None:intergenic | 30.0% | |
| GAAGGTTCAACATAACAAAA+TGG | - | chr3_2:67789880-67789899 | None:intergenic | 30.0% | |
| ! | CAAATTTGATGATCCATGAA+TGG | + | chr3_2:67789961-67789980 | Msa0419650:intron | 30.0% |
| AAGTAAGAAACTTCCATTCA+TGG | - | chr3_2:67789977-67789996 | None:intergenic | 30.0% | |
| ATGAATCAATGGTTATAGTC+TGG | - | chr3_2:67790269-67790288 | None:intergenic | 30.0% | |
| AGCAAAAATGGAGACATAAA+GGG | - | chr3_2:67790301-67790320 | None:intergenic | 30.0% | |
| GAACATTAGTTCAGCAAAAA+TGG | - | chr3_2:67790313-67790332 | None:intergenic | 30.0% | |
| AAATTGCTGACAATGAGTAT+AGG | + | chr3_2:67790366-67790385 | Msa0419650:three_prime_UTR | 30.0% | |
| AAGATTACACTGTAAATAGG+GGG | - | chr3_2:67790562-67790581 | None:intergenic | 30.0% | |
| GAAGATTACACTGTAAATAG+GGG | - | chr3_2:67790563-67790582 | None:intergenic | 30.0% | |
| AAGAGAAAGAGAGAGAGATA+CGG | - | chr3_2:67787993-67788012 | None:intergenic | 35.0% | |
| TTGATCGCAAAGTCATTGAA+AGG | + | chr3_2:67788244-67788263 | Msa0419650:CDS | 35.0% | |
| ACTAGAGCTTTACAGTATCT+TGG | + | chr3_2:67788434-67788453 | Msa0419650:CDS | 35.0% | |
| AGCTTTACAGTATCTTGGTT+TGG | + | chr3_2:67788439-67788458 | Msa0419650:CDS | 35.0% | |
| !! | TTACAGTATCTTGGTTTGGA+TGG | + | chr3_2:67788443-67788462 | Msa0419650:CDS | 35.0% |
| ATGACAGATTATTCTATGCC+TGG | + | chr3_2:67788624-67788643 | Msa0419650:CDS | 35.0% | |
| TGACAGATTATTCTATGCCT+GGG | + | chr3_2:67788625-67788644 | Msa0419650:CDS | 35.0% | |
| ATTTAGAGAAATTCCAGTGG+TGG | + | chr3_2:67788845-67788864 | Msa0419650:CDS | 35.0% | |
| GATTTCATGTCTAGACTAGA+TGG | - | chr3_2:67789119-67789138 | None:intergenic | 35.0% | |
| CTAGAATAAGCAAAAACGTG+TGG | - | chr3_2:67789180-67789199 | None:intergenic | 35.0% | |
| ! | CACACGTTTTTGCTTATTCT+AGG | + | chr3_2:67789178-67789197 | Msa0419650:intron | 35.0% |
| ! | CGTTTTTGCTTATTCTAGGT+TGG | + | chr3_2:67789182-67789201 | Msa0419650:intron | 35.0% |
| !!! | CCATGTATTTTTGGATTTGG+TGG | - | chr3_2:67789250-67789269 | None:intergenic | 35.0% |
| CCACCAAATCCAAAAATACA+TGG | + | chr3_2:67789247-67789266 | Msa0419650:intron | 35.0% | |
| !!! | CCACCATGTATTTTTGGATT+TGG | - | chr3_2:67789253-67789272 | None:intergenic | 35.0% |
| CCAAATCCAAAAATACATGG+TGG | + | chr3_2:67789250-67789269 | Msa0419650:intron | 35.0% | |
| ! | ATCTCCCACTATGTTCTAAA+GGG | + | chr3_2:67789437-67789456 | Msa0419650:intron | 35.0% |
| !! | GATTCCCTTTAGAACATAGT+GGG | - | chr3_2:67789444-67789463 | None:intergenic | 35.0% |
| !! | TGATTCCCTTTAGAACATAG+TGG | - | chr3_2:67789445-67789464 | None:intergenic | 35.0% |
| ! | AAAATACAACATAGCCTTGG+TGG | - | chr3_2:67789483-67789502 | None:intergenic | 35.0% |
| CATGGATCATCAAATTTGCA+AGG | - | chr3_2:67789959-67789978 | None:intergenic | 35.0% | |
| TTTGTTCATTGACAGTTGCT+TGG | + | chr3_2:67790030-67790049 | Msa0419650:intron | 35.0% | |
| TCTATTGAAACCTGTCAAGT+TGG | + | chr3_2:67790072-67790091 | Msa0419650:CDS | 35.0% | |
| GATTTCATAATGAGAGGTGA+AGG | + | chr3_2:67790115-67790134 | Msa0419650:CDS | 35.0% | |
| CAGCAAAAATGGAGACATAA+AGG | - | chr3_2:67790302-67790321 | None:intergenic | 35.0% | |
| CTGACAATGAGTATAGGATT+AGG | + | chr3_2:67790372-67790391 | Msa0419650:three_prime_UTR | 35.0% | |
| ATTAACTAAACCCTCCCATT+TGG | + | chr3_2:67790477-67790496 | Msa0419650:three_prime_UTR | 35.0% | |
| !! | TGGTAATGAGTTTTGCTACA+AGG | + | chr3_2:67790601-67790620 | Msa0419650:three_prime_UTR | 35.0% |
| AAGCAAAAAATCGAGGACAG+AGG | - | chr3_2:67787935-67787954 | None:intergenic | 40.0% | |
| !! | TCTTCATCGCTTTTCTGTGA+TGG | + | chr3_2:67788128-67788147 | Msa0419650:exon | 40.0% |
| AATATGGTTACAGGGTGTGA+AGG | + | chr3_2:67788590-67788609 | Msa0419650:intron | 40.0% | |
| AATTCATATCCTGTCATCCC+AGG | - | chr3_2:67788645-67788664 | None:intergenic | 40.0% | |
| ACATCTTGACCCGAATTGAT+AGG | + | chr3_2:67788883-67788902 | Msa0419650:CDS | 40.0% | |
| ! | GATCACCCACCATGTATTTT+TGG | - | chr3_2:67789259-67789278 | None:intergenic | 40.0% |
| GATCTCCCACTATGTTCTAA+AGG | + | chr3_2:67789436-67789455 | Msa0419650:intron | 40.0% | |
| ! | ACATAGCCTTGGTGGTAAAT+TGG | - | chr3_2:67789475-67789494 | None:intergenic | 40.0% |
| !! | AAAGGATTTTGGCCATGTGT+TGG | - | chr3_2:67789559-67789578 | None:intergenic | 40.0% |
| CCATGTGTCTAACTCTAACA+TGG | - | chr3_2:67789657-67789676 | None:intergenic | 40.0% | |
| CCATGTTAGAGTTAGACACA+TGG | + | chr3_2:67789654-67789673 | Msa0419650:intron | 40.0% | |
| ATAATGTTGTCATGCCAGCA+GGG | - | chr3_2:67789770-67789789 | None:intergenic | 40.0% | |
| AATAATGTTGTCATGCCAGC+AGG | - | chr3_2:67789771-67789790 | None:intergenic | 40.0% | |
| ! | TGAACCTTCTCAGCCTTATA+AGG | + | chr3_2:67789891-67789910 | Msa0419650:intron | 40.0% |
| ! | GAACCTTCTCAGCCTTATAA+GGG | + | chr3_2:67789892-67789911 | Msa0419650:intron | 40.0% |
| ATTCCCTTATAAGGCTGAGA+AGG | - | chr3_2:67789898-67789917 | None:intergenic | 40.0% | |
| CTCATGCACATTCCCTTATA+AGG | - | chr3_2:67789907-67789926 | None:intergenic | 40.0% | |
| ATTGACAGTTGCTTGGAAGA+AGG | + | chr3_2:67790037-67790056 | Msa0419650:intron | 40.0% | |
| AGAGGTGAAGGAAAGAAAGT+CGG | + | chr3_2:67790127-67790146 | Msa0419650:CDS | 40.0% | |
| TTCTTTGACGACATTGCAGA+CGG | - | chr3_2:67790244-67790263 | None:intergenic | 40.0% | |
| TAGGATTAGGACTGATGAAG+AGG | + | chr3_2:67790385-67790404 | Msa0419650:three_prime_UTR | 40.0% | |
| AGAAAGAGAGAGAGATACGG+AGG | - | chr3_2:67787990-67788009 | None:intergenic | 45.0% | |
| ! | TTTTCTGTGATGGCTACTGC+TGG | + | chr3_2:67788138-67788157 | Msa0419650:exon | 45.0% |
| TGTTCTCAGGCAGAGTTTAC+CGG | + | chr3_2:67788164-67788183 | Msa0419650:CDS | 45.0% | |
| CAGAGTTTACCGGAAGTAAG+TGG | + | chr3_2:67788174-67788193 | Msa0419650:CDS | 45.0% | |
| GCAGTTACTGTTGTTGAGAG+TGG | + | chr3_2:67788410-67788429 | Msa0419650:intron | 45.0% | |
| GATGGTGACACGAGTTCTAT+TGG | + | chr3_2:67788461-67788480 | Msa0419650:CDS | 45.0% | |
| TATTCTATGCCTGGGATGAC+AGG | + | chr3_2:67788633-67788652 | Msa0419650:CDS | 45.0% | |
| AGAGTTAGACACATGGAGTG+TGG | + | chr3_2:67789661-67789680 | Msa0419650:intron | 45.0% | |
| TTCACATCTGCCAACTTGAC+AGG | - | chr3_2:67790085-67790104 | None:intergenic | 45.0% | |
| GGCACCGCTAAATGAATCAA+TGG | - | chr3_2:67790280-67790299 | None:intergenic | 45.0% | |
| TGAAGTAGACCCTGCCAAAT+GGG | - | chr3_2:67790494-67790513 | None:intergenic | 45.0% | |
| TTGAAGTAGACCCTGCCAAA+TGG | - | chr3_2:67790495-67790514 | None:intergenic | 45.0% | |
| ! | CTACTGCTGGTGATGTTCTC+AGG | + | chr3_2:67788151-67788170 | Msa0419650:CDS | 50.0% |
| TTACCGGAAGTAAGTGGTGC+TGG | + | chr3_2:67788180-67788199 | Msa0419650:CDS | 50.0% | |
| ACACCAGCACCACTTACTTC+CGG | - | chr3_2:67788186-67788205 | None:intergenic | 50.0% | |
| !! | GAAGTAAGTGGTGCTGGTGT+TGG | + | chr3_2:67788186-67788205 | Msa0419650:CDS | 50.0% |
| AGAGTTGCACGTTCTTGCAG+TGG | + | chr3_2:67788209-67788228 | Msa0419650:CDS | 50.0% | |
| TCAGAGGACATAACCACCAC+TGG | - | chr3_2:67788861-67788880 | None:intergenic | 50.0% | |
| TCGGGTCAAGATGTTCTCAG+AGG | - | chr3_2:67788877-67788896 | None:intergenic | 50.0% | |
| ! | GTTTAGGCTGGCACTGAATG+TGG | + | chr3_2:67789347-67789366 | Msa0419650:intron | 50.0% |
| GCAGGGTCCTTGTAGGAAAA+TGG | - | chr3_2:67789753-67789772 | None:intergenic | 50.0% | |
| ! | TTTTCCTACAAGGACCCTGC+TGG | + | chr3_2:67789753-67789772 | Msa0419650:intron | 50.0% |
| TTGCTTGGAAGAAGGAGCAG+AGG | + | chr3_2:67790045-67790064 | Msa0419650:CDS | 50.0% | |
| GGTGAAGGAAAGAAAGTCGG+AGG | + | chr3_2:67790130-67790149 | Msa0419650:CDS | 50.0% | |
| GACATTGCAGACGGTGACAA+TGG | - | chr3_2:67790235-67790254 | None:intergenic | 50.0% | |
| ACTAAACCCTCCCATTTGGC+AGG | + | chr3_2:67790481-67790500 | Msa0419650:three_prime_UTR | 50.0% | |
| CTAAACCCTCCCATTTGGCA+GGG | + | chr3_2:67790482-67790501 | Msa0419650:three_prime_UTR | 50.0% | |
| GTAGACCCTGCCAAATGGGA+GGG | - | chr3_2:67790490-67790509 | None:intergenic | 55.0% | |
| AGTAGACCCTGCCAAATGGG+AGG | - | chr3_2:67790491-67790510 | None:intergenic | 55.0% | |
| CATGCCAGCAGGGTCCTTGT+AGG | - | chr3_2:67789760-67789779 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 67787926 | 67790681 | 67787926 | ID=Msa0419650;Name=Msa0419650 |
| chr3_2 | mRNA | 67787926 | 67790681 | 67787926 | ID=Msa0419650-mRNA-1;Parent=Msa0419650;Name=Msa0419650-mRNA-1;_AED=0.26;_eAED=0.26;_QI=221|0.75|0.8|1|1|1|5|405|201 |
| chr3_2 | exon | 67787926 | 67788291 | 67787926 | ID=Msa0419650-mRNA-1:exon:15895;Parent=Msa0419650-mRNA-1 |
| chr3_2 | exon | 67788414 | 67788490 | 67788414 | ID=Msa0419650-mRNA-1:exon:15896;Parent=Msa0419650-mRNA-1 |
| chr3_2 | exon | 67788603 | 67788680 | 67788603 | ID=Msa0419650-mRNA-1:exon:15897;Parent=Msa0419650-mRNA-1 |
| chr3_2 | exon | 67788831 | 67788904 | 67788831 | ID=Msa0419650-mRNA-1:exon:15898;Parent=Msa0419650-mRNA-1 |
| chr3_2 | exon | 67790045 | 67790681 | 67790045 | ID=Msa0419650-mRNA-1:exon:15899;Parent=Msa0419650-mRNA-1 |
| chr3_2 | five_prime_UTR | 67787926 | 67788146 | 67787926 | ID=Msa0419650-mRNA-1:five_prime_utr;Parent=Msa0419650-mRNA-1 |
| chr3_2 | CDS | 67788147 | 67788291 | 67788147 | ID=Msa0419650-mRNA-1:cds;Parent=Msa0419650-mRNA-1 |
| chr3_2 | CDS | 67788414 | 67788490 | 67788414 | ID=Msa0419650-mRNA-1:cds;Parent=Msa0419650-mRNA-1 |
| chr3_2 | CDS | 67788603 | 67788680 | 67788603 | ID=Msa0419650-mRNA-1:cds;Parent=Msa0419650-mRNA-1 |
| chr3_2 | CDS | 67788831 | 67788904 | 67788831 | ID=Msa0419650-mRNA-1:cds;Parent=Msa0419650-mRNA-1 |
| chr3_2 | CDS | 67790045 | 67790276 | 67790045 | ID=Msa0419650-mRNA-1:cds;Parent=Msa0419650-mRNA-1 |
| chr3_2 | three_prime_UTR | 67790277 | 67790681 | 67790277 | ID=Msa0419650-mRNA-1:three_prime_utr;Parent=Msa0419650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
