Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419770 | XP_013461074.1 | 91.270 | 252 | 17 | 1 | 1 | 247 | 1 | 252 | 5.05e-147 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419770 | sp|Q9ZVD2|NHL13_ARATH | 52.107 | 261 | 111 | 2 | 1 | 248 | 1 | 260 | 5.45e-96 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419770 | A0A072V156 | 91.270 | 252 | 17 | 1 | 1 | 247 | 1 | 252 | 2.41e-147 | 421 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0419770 | Msa0450100 | 0.866248 | 3.275246e-65 | -8.615850e-47 |
| Msa0419770 | Msa0464670 | 0.814362 | 1.601113e-51 | -8.615850e-47 |
| Msa0419770 | Msa0510120 | 0.800724 | 1.260322e-48 | -8.615850e-47 |
| Msa0419770 | Msa1429310 | 0.980107 | 1.841081e-149 | -8.615850e-47 |
| Msa0419770 | Msa1432830 | 0.802002 | 6.897468e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419770 | MtrunA17_Chr3g0118371 | 91.270 | 252 | 17 | 1 | 1 | 247 | 1 | 252 | 4.65e-151 | 421 |
| Msa0419770 | MtrunA17_Chr5g0440571 | 63.281 | 256 | 85 | 3 | 1 | 248 | 1 | 255 | 6.83e-119 | 339 |
| Msa0419770 | MtrunA17_Chr2g0281401 | 49.615 | 260 | 109 | 5 | 1 | 241 | 1 | 257 | 8.08e-80 | 241 |
| Msa0419770 | MtrunA17_Chr3g0118381 | 68.493 | 146 | 44 | 2 | 104 | 247 | 1 | 146 | 9.50e-69 | 208 |
| Msa0419770 | MtrunA17_Chr3g0118391 | 56.784 | 199 | 84 | 2 | 43 | 241 | 4 | 200 | 3.94e-65 | 201 |
| Msa0419770 | MtrunA17_Chr1g0188801 | 32.669 | 251 | 158 | 5 | 3 | 249 | 7 | 250 | 1.68e-34 | 124 |
| Msa0419770 | MtrunA17_Chr5g0433201 | 31.818 | 264 | 162 | 6 | 1 | 247 | 1 | 263 | 1.10e-33 | 122 |
| Msa0419770 | MtrunA17_Chr3g0109121 | 36.782 | 174 | 99 | 3 | 81 | 249 | 85 | 252 | 3.77e-30 | 112 |
| Msa0419770 | MtrunA17_Chr3g0115651 | 27.876 | 226 | 142 | 7 | 13 | 230 | 16 | 228 | 1.65e-26 | 103 |
| Msa0419770 | MtrunA17_Chr8g0382431 | 28.755 | 233 | 142 | 8 | 24 | 248 | 43 | 259 | 3.57e-23 | 94.7 |
| Msa0419770 | MtrunA17_Chr3g0135711 | 28.358 | 201 | 131 | 6 | 57 | 247 | 56 | 253 | 1.49e-19 | 85.1 |
| Msa0419770 | MtrunA17_Chr4g0067041 | 30.918 | 207 | 119 | 6 | 38 | 227 | 16 | 215 | 3.99e-19 | 83.6 |
| Msa0419770 | MtrunA17_Chr2g0330241 | 27.473 | 182 | 120 | 4 | 77 | 248 | 77 | 256 | 9.14e-18 | 80.1 |
| Msa0419770 | MtrunA17_Chr2g0324111 | 26.699 | 206 | 147 | 3 | 44 | 247 | 17 | 220 | 2.59e-16 | 75.5 |
| Msa0419770 | MtrunA17_Chr7g0267281 | 25.463 | 216 | 148 | 7 | 36 | 245 | 18 | 226 | 3.19e-16 | 75.1 |
| Msa0419770 | MtrunA17_Chr2g0280851 | 27.027 | 148 | 106 | 2 | 76 | 223 | 35 | 180 | 8.72e-15 | 70.9 |
| Msa0419770 | MtrunA17_Chr7g0267231 | 27.717 | 184 | 120 | 7 | 51 | 227 | 29 | 206 | 7.09e-14 | 68.9 |
| Msa0419770 | MtrunA17_Chr1g0177471 | 25.568 | 176 | 120 | 4 | 82 | 248 | 74 | 247 | 8.74e-14 | 68.9 |
| Msa0419770 | MtrunA17_Chr8g0342091 | 25.397 | 252 | 143 | 9 | 5 | 248 | 7 | 221 | 1.07e-13 | 68.2 |
| Msa0419770 | MtrunA17_Chr7g0267301 | 28.108 | 185 | 118 | 8 | 52 | 227 | 29 | 207 | 7.65e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419770 | AT2G27080.1 | 52.107 | 261 | 111 | 2 | 1 | 248 | 1 | 260 | 5.54e-97 | 285 |
| Msa0419770 | AT2G27080.2 | 52.107 | 261 | 111 | 2 | 1 | 248 | 1 | 260 | 5.54e-97 | 285 |
| Msa0419770 | AT5G21130.1 | 45.852 | 229 | 123 | 1 | 19 | 247 | 53 | 280 | 6.57e-71 | 219 |
| Msa0419770 | AT5G36970.1 | 33.205 | 259 | 150 | 9 | 1 | 247 | 1 | 248 | 6.41e-33 | 120 |
| Msa0419770 | AT1G65690.1 | 32.245 | 245 | 159 | 4 | 7 | 249 | 13 | 252 | 4.87e-29 | 110 |
| Msa0419770 | AT1G54540.1 | 32.540 | 252 | 152 | 7 | 1 | 247 | 1 | 239 | 3.03e-28 | 108 |
| Msa0419770 | AT2G35980.1 | 32.461 | 191 | 121 | 6 | 36 | 224 | 16 | 200 | 1.00e-23 | 95.9 |
| Msa0419770 | AT2G22180.1 | 27.542 | 236 | 141 | 8 | 19 | 245 | 75 | 289 | 1.24e-20 | 89.0 |
| Msa0419770 | AT3G11650.1 | 27.228 | 202 | 129 | 5 | 36 | 224 | 17 | 213 | 4.56e-17 | 78.2 |
| Msa0419770 | AT5G22870.1 | 25.405 | 185 | 126 | 4 | 62 | 241 | 26 | 203 | 1.46e-16 | 76.3 |
| Msa0419770 | AT5G06320.1 | 30.000 | 170 | 113 | 5 | 61 | 227 | 44 | 210 | 3.83e-16 | 75.5 |
| Msa0419770 | AT5G11890.1 | 28.866 | 194 | 129 | 4 | 39 | 224 | 60 | 252 | 1.26e-11 | 63.5 |
| Msa0419770 | AT1G17620.1 | 29.258 | 229 | 152 | 6 | 3 | 224 | 4 | 229 | 1.30e-11 | 63.5 |
| Msa0419770 | AT4G09590.1 | 24.468 | 188 | 138 | 3 | 60 | 247 | 20 | 203 | 2.57e-11 | 61.6 |
| Msa0419770 | AT3G52470.1 | 24.444 | 180 | 133 | 2 | 68 | 247 | 24 | 200 | 6.29e-11 | 60.8 |
| Msa0419770 | AT5G53730.1 | 26.351 | 148 | 98 | 5 | 82 | 223 | 44 | 186 | 7.71e-11 | 60.5 |
Find 67 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGCTGTTGCTGTCTTTGC+TGG | 0.303551 | 3_2:+67961718 | Msa0419770:CDS |
| ATGCGGTAGGTTTGATCCTT+GGG | 0.329031 | 3_2:-67961633 | None:intergenic |
| GTAGTTATGAATTTGATCTT+TGG | 0.333495 | 3_2:+67962270 | Msa0419770:CDS |
| ATTGTGTATTTCGGTGCTTC+CGG | 0.342584 | 3_2:-67961813 | None:intergenic |
| TTGGAAGGTGGAGAGGCGTT+AGG | 0.343094 | 3_2:-67961567 | None:intergenic |
| GACGTGGAAGGTTAGAGTTA+AGG | 0.387882 | 3_2:+67962187 | Msa0419770:CDS |
| AGGTTTGATCCTTGGGGAGC+TGG | 0.388163 | 3_2:-67961626 | None:intergenic |
| GTGCTCATGGCCATCGCTGC+CGG | 0.415051 | 3_2:+67961768 | Msa0419770:CDS |
| CGGCGGCGATGGAGCGGTGT+TGG | 0.430905 | 3_2:-67961586 | None:intergenic |
| GATGCGGTAGGTTTGATCCT+TGG | 0.434091 | 3_2:-67961634 | None:intergenic |
| CGGCATTGAACTTGCGAGAT+CGG | 0.437793 | 3_2:+67962067 | Msa0419770:CDS |
| GCGTAACGTTGTGCATTCTC+TGG | 0.446865 | 3_2:-67961663 | None:intergenic |
| ACCGCTCCATCGCCGCCGTC+CGG | 0.448630 | 3_2:+67961591 | Msa0419770:CDS |
| TGTTAGGTTCATTCCCTTGA+CGG | 0.454596 | 3_2:-67961847 | None:intergenic |
| ACACGATCGATTGTGTATTT+CGG | 0.457527 | 3_2:-67961822 | None:intergenic |
| TGCTGTCTTTGCTGGTTCAT+CGG | 0.470949 | 3_2:+67961726 | Msa0419770:CDS |
| AAATAGTAGATAAAGATGTT+AGG | 0.480050 | 3_2:-67961863 | None:intergenic |
| CGTTGTGCATTCTCTGGTGG+TGG | 0.481192 | 3_2:-67961657 | None:intergenic |
| TGGAAGGTGGAGAGGCGTTA+GGG | 0.484091 | 3_2:-67961566 | None:intergenic |
| GTTTCTGTTAAAGCTGATAA+CGG | 0.484250 | 3_2:+67961900 | Msa0419770:CDS |
| GGCGATGGAGCGGTGTTGGA+AGG | 0.486020 | 3_2:-67961582 | None:intergenic |
| ATTTACTCTGATCGTGCTCA+TGG | 0.493417 | 3_2:+67961755 | Msa0419770:CDS |
| TCTCTGTAACGGCGTCCTGC+CGG | 0.493799 | 3_2:+67961989 | Msa0419770:CDS |
| CTCTGGTGGTGGGATGCGGT+AGG | 0.506358 | 3_2:-67961646 | None:intergenic |
| AGCGTTGGTGAATGCGGTTA+CGG | 0.509259 | 3_2:+67962097 | Msa0419770:CDS |
| GAGCTGGATGACATATGTTC+CGG | 0.509609 | 3_2:-67961610 | None:intergenic |
| GCTCTCAGCTTCAACGTTAA+CGG | 0.515780 | 3_2:-67962131 | None:intergenic |
| CCTCCAACTTTAATCTTCAC+CGG | 0.526185 | 3_2:-67962155 | None:intergenic |
| CATTCTCTGGTGGTGGGATG+CGG | 0.527360 | 3_2:-67961650 | None:intergenic |
| AATCGATCGTGTCTCCGTCA+AGG | 0.528158 | 3_2:+67961833 | Msa0419770:CDS |
| ATCGATCGTGTCTCCGTCAA+GGG | 0.528651 | 3_2:+67961834 | Msa0419770:CDS |
| ACGGCTGATAAAACGCCGGC+AGG | 0.534301 | 3_2:-67962004 | None:intergenic |
| TATGTTCCGGACGGCGGCGA+TGG | 0.535007 | 3_2:-67961597 | None:intergenic |
| TCTAACGGTGGATCAGTTAA+CGG | 0.540813 | 3_2:+67962220 | Msa0419770:CDS |
| TCCGGACGGCGGCGATGGAG+CGG | 0.543871 | 3_2:-67961592 | None:intergenic |
| GCACCGGTGAAGATTAAAGT+TGG | 0.544024 | 3_2:+67962152 | Msa0419770:CDS |
| GGGTGAACACGATCAGCCAT+TGG | 0.548503 | 3_2:-67961546 | None:intergenic |
| GACAGCAACAGCATCCGCAC+CGG | 0.556268 | 3_2:-67961710 | None:intergenic |
| CAGACGGTGTTGAAAGGTAA+CGG | 0.567575 | 3_2:+67962047 | Msa0419770:CDS |
| GTGTTTCAGACGGTGTTGAA+AGG | 0.576347 | 3_2:+67962041 | Msa0419770:CDS |
| GGTGGATCAGTTAACGGCGC+AGG | 0.585762 | 3_2:+67962226 | Msa0419770:CDS |
| TCAGAGAGCGTTGGTGAATG+CGG | 0.587887 | 3_2:+67962091 | Msa0419770:CDS |
| AACGTTGAAGCTGAGAGCAC+CGG | 0.589685 | 3_2:+67962136 | Msa0419770:CDS |
| GATGGAGCGGTGTTGGAAGG+TGG | 0.592952 | 3_2:-67961579 | None:intergenic |
| CCGGTGAAGATTAAAGTTGG+AGG | 0.596076 | 3_2:+67962155 | Msa0419770:CDS |
| AGCGGTGTTGGAAGGTGGAG+AGG | 0.599059 | 3_2:-67961574 | None:intergenic |
| CGCCGCAAAAGTCGCCGGTG+CGG | 0.603490 | 3_2:+67961696 | Msa0419770:CDS |
| ACACTCGCCGCAAAAGTCGC+CGG | 0.610216 | 3_2:+67961691 | Msa0419770:CDS |
| TAACGTGACGGTGTTTCAGA+CGG | 0.610689 | 3_2:+67962031 | Msa0419770:CDS |
| TAAGGTTGACTGTGATCTAA+CGG | 0.613562 | 3_2:+67962205 | Msa0419770:CDS |
| TTTAACAGAAACATCAAACT+CGG | 0.615677 | 3_2:-67961889 | None:intergenic |
| TGCGGTAGGTTTGATCCTTG+GGG | 0.618357 | 3_2:-67961632 | None:intergenic |
| GCAGGCGAAGATTGTTGACA+AGG | 0.624423 | 3_2:+67962244 | Msa0419770:CDS |
| AACACCGTCACGTTATTCGA+CGG | 0.636233 | 3_2:-67962023 | None:intergenic |
| GTTGTGCATTCTCTGGTGGT+GGG | 0.643760 | 3_2:-67961656 | None:intergenic |
| TAACGTTGTGCATTCTCTGG+TGG | 0.648494 | 3_2:-67961660 | None:intergenic |
| TTGGAGGATCTGTGAAGACG+TGG | 0.649777 | 3_2:+67962171 | Msa0419770:CDS |
| TTAACAGAAACATCAAACTC+GGG | 0.650957 | 3_2:-67961888 | None:intergenic |
| GAGATCGGATCAGAGAGCGT+TGG | 0.672799 | 3_2:+67962082 | Msa0419770:CDS |
| AGAGGCGTTAGTCTCTGTAA+CGG | 0.674629 | 3_2:+67961978 | Msa0419770:CDS |
| AGGATCTGTGAAGACGTGGA+AGG | 0.675912 | 3_2:+67962175 | Msa0419770:CDS |
| ATATGTCATCCAGCTCCCCA+AGG | 0.678653 | 3_2:+67961617 | Msa0419770:CDS |
| ATGACATATGTTCCGGACGG+CGG | 0.681432 | 3_2:-67961603 | None:intergenic |
| TGGATGACATATGTTCCGGA+CGG | 0.702336 | 3_2:-67961606 | None:intergenic |
| TTCGACGGCTGATAAAACGC+CGG | 0.712718 | 3_2:-67962008 | None:intergenic |
| GGTTGACTGTGATCTAACGG+TGG | 0.726582 | 3_2:+67962208 | Msa0419770:CDS |
| TCAGCCGTCGAATAACGTGA+CGG | 0.740743 | 3_2:+67962019 | Msa0419770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAGTAGATAAAGATGTT+AGG | - | chr3_2:67961866-67961885 | None:intergenic | 20.0% |
| !! | AAATAGTAGATAAAGATGTT+AGG | - | chr3_2:67961866-67961885 | None:intergenic | 20.0% |
| ! | TTTAACAGAAACATCAAACT+CGG | - | chr3_2:67961892-67961911 | None:intergenic | 25.0% |
| ! | GTAGTTATGAATTTGATCTT+TGG | + | chr3_2:67962270-67962289 | Msa0419770:CDS | 25.0% |
| ! | TTTAACAGAAACATCAAACT+CGG | - | chr3_2:67961892-67961911 | None:intergenic | 25.0% |
| ! | GTAGTTATGAATTTGATCTT+TGG | + | chr3_2:67962270-67962289 | Msa0419770:CDS | 25.0% |
| AACGATCAAGTAAAAAACAC+CGG | - | chr3_2:67961790-67961809 | None:intergenic | 30.0% | |
| TTAACAGAAACATCAAACTC+GGG | - | chr3_2:67961891-67961910 | None:intergenic | 30.0% | |
| GTTTCTGTTAAAGCTGATAA+CGG | + | chr3_2:67961900-67961919 | Msa0419770:CDS | 30.0% | |
| ! | GATAACGGTAACAAAAAGAT+CGG | + | chr3_2:67961915-67961934 | Msa0419770:CDS | 30.0% |
| AACGATCAAGTAAAAAACAC+CGG | - | chr3_2:67961790-67961809 | None:intergenic | 30.0% | |
| TTAACAGAAACATCAAACTC+GGG | - | chr3_2:67961891-67961910 | None:intergenic | 30.0% | |
| GTTTCTGTTAAAGCTGATAA+CGG | + | chr3_2:67961900-67961919 | Msa0419770:CDS | 30.0% | |
| ! | GATAACGGTAACAAAAAGAT+CGG | + | chr3_2:67961915-67961934 | Msa0419770:CDS | 30.0% |
| ! | TTTTTACTTGATCGTTCGTC+CGG | + | chr3_2:67961794-67961813 | Msa0419770:CDS | 35.0% |
| ACACGATCGATTGTGTATTT+CGG | - | chr3_2:67961825-67961844 | None:intergenic | 35.0% | |
| !! | AGCGTTGAAATGTTTTACAG+AGG | + | chr3_2:67961960-67961979 | Msa0419770:CDS | 35.0% |
| TAAGGTTGACTGTGATCTAA+CGG | + | chr3_2:67962205-67962224 | Msa0419770:CDS | 35.0% | |
| ! | TTTTTACTTGATCGTTCGTC+CGG | + | chr3_2:67961794-67961813 | Msa0419770:CDS | 35.0% |
| ACACGATCGATTGTGTATTT+CGG | - | chr3_2:67961825-67961844 | None:intergenic | 35.0% | |
| !! | AGCGTTGAAATGTTTTACAG+AGG | + | chr3_2:67961960-67961979 | Msa0419770:CDS | 35.0% |
| TAAGGTTGACTGTGATCTAA+CGG | + | chr3_2:67962205-67962224 | Msa0419770:CDS | 35.0% | |
| ATTTACTCTGATCGTGCTCA+TGG | + | chr3_2:67961755-67961774 | Msa0419770:CDS | 40.0% | |
| !! | ATTGTGTATTTCGGTGCTTC+CGG | - | chr3_2:67961816-67961835 | None:intergenic | 40.0% |
| TGTTAGGTTCATTCCCTTGA+CGG | - | chr3_2:67961850-67961869 | None:intergenic | 40.0% | |
| CCTCCAACTTTAATCTTCAC+CGG | - | chr3_2:67962158-67962177 | None:intergenic | 40.0% | |
| TCTAACGGTGGATCAGTTAA+CGG | + | chr3_2:67962220-67962239 | Msa0419770:CDS | 40.0% | |
| ATTTACTCTGATCGTGCTCA+TGG | + | chr3_2:67961755-67961774 | Msa0419770:CDS | 40.0% | |
| !! | ATTGTGTATTTCGGTGCTTC+CGG | - | chr3_2:67961816-67961835 | None:intergenic | 40.0% |
| TGTTAGGTTCATTCCCTTGA+CGG | - | chr3_2:67961850-67961869 | None:intergenic | 40.0% | |
| CCTCCAACTTTAATCTTCAC+CGG | - | chr3_2:67962158-67962177 | None:intergenic | 40.0% | |
| TCTAACGGTGGATCAGTTAA+CGG | + | chr3_2:67962220-67962239 | Msa0419770:CDS | 40.0% | |
| TGGATGACATATGTTCCGGA+CGG | - | chr3_2:67961609-67961628 | None:intergenic | 45.0% | |
| GAGCTGGATGACATATGTTC+CGG | - | chr3_2:67961613-67961632 | None:intergenic | 45.0% | |
| ATGCGGTAGGTTTGATCCTT+GGG | - | chr3_2:67961636-67961655 | None:intergenic | 45.0% | |
| TAACGTTGTGCATTCTCTGG+TGG | - | chr3_2:67961663-67961682 | None:intergenic | 45.0% | |
| !! | TGCTGTCTTTGCTGGTTCAT+CGG | + | chr3_2:67961726-67961745 | Msa0419770:CDS | 45.0% |
| !! | AGAGGCGTTAGTCTCTGTAA+CGG | + | chr3_2:67961978-67961997 | Msa0419770:CDS | 45.0% |
| AACACCGTCACGTTATTCGA+CGG | - | chr3_2:67962026-67962045 | None:intergenic | 45.0% | |
| TAACGTGACGGTGTTTCAGA+CGG | + | chr3_2:67962031-67962050 | Msa0419770:CDS | 45.0% | |
| ! | GTGTTTCAGACGGTGTTGAA+AGG | + | chr3_2:67962041-67962060 | Msa0419770:CDS | 45.0% |
| ! | CAGACGGTGTTGAAAGGTAA+CGG | + | chr3_2:67962047-67962066 | Msa0419770:CDS | 45.0% |
| GCTCTCAGCTTCAACGTTAA+CGG | - | chr3_2:67962134-67962153 | None:intergenic | 45.0% | |
| ! | GCACCGGTGAAGATTAAAGT+TGG | + | chr3_2:67962152-67962171 | Msa0419770:CDS | 45.0% |
| CCGGTGAAGATTAAAGTTGG+AGG | + | chr3_2:67962155-67962174 | Msa0419770:CDS | 45.0% | |
| GACGTGGAAGGTTAGAGTTA+AGG | + | chr3_2:67962187-67962206 | Msa0419770:CDS | 45.0% | |
| TGGATGACATATGTTCCGGA+CGG | - | chr3_2:67961609-67961628 | None:intergenic | 45.0% | |
| GAGCTGGATGACATATGTTC+CGG | - | chr3_2:67961613-67961632 | None:intergenic | 45.0% | |
| ATGCGGTAGGTTTGATCCTT+GGG | - | chr3_2:67961636-67961655 | None:intergenic | 45.0% | |
| TAACGTTGTGCATTCTCTGG+TGG | - | chr3_2:67961663-67961682 | None:intergenic | 45.0% | |
| !! | TGCTGTCTTTGCTGGTTCAT+CGG | + | chr3_2:67961726-67961745 | Msa0419770:CDS | 45.0% |
| !! | AGAGGCGTTAGTCTCTGTAA+CGG | + | chr3_2:67961978-67961997 | Msa0419770:CDS | 45.0% |
| AACACCGTCACGTTATTCGA+CGG | - | chr3_2:67962026-67962045 | None:intergenic | 45.0% | |
| TAACGTGACGGTGTTTCAGA+CGG | + | chr3_2:67962031-67962050 | Msa0419770:CDS | 45.0% | |
| ! | GTGTTTCAGACGGTGTTGAA+AGG | + | chr3_2:67962041-67962060 | Msa0419770:CDS | 45.0% |
| ! | CAGACGGTGTTGAAAGGTAA+CGG | + | chr3_2:67962047-67962066 | Msa0419770:CDS | 45.0% |
| GCTCTCAGCTTCAACGTTAA+CGG | - | chr3_2:67962134-67962153 | None:intergenic | 45.0% | |
| ! | GCACCGGTGAAGATTAAAGT+TGG | + | chr3_2:67962152-67962171 | Msa0419770:CDS | 45.0% |
| CCGGTGAAGATTAAAGTTGG+AGG | + | chr3_2:67962155-67962174 | Msa0419770:CDS | 45.0% | |
| GACGTGGAAGGTTAGAGTTA+AGG | + | chr3_2:67962187-67962206 | Msa0419770:CDS | 45.0% | |
| ATGACATATGTTCCGGACGG+CGG | - | chr3_2:67961606-67961625 | None:intergenic | 50.0% | |
| ATATGTCATCCAGCTCCCCA+AGG | + | chr3_2:67961617-67961636 | Msa0419770:CDS | 50.0% | |
| TGCGGTAGGTTTGATCCTTG+GGG | - | chr3_2:67961635-67961654 | None:intergenic | 50.0% | |
| GATGCGGTAGGTTTGATCCT+TGG | - | chr3_2:67961637-67961656 | None:intergenic | 50.0% | |
| GTTGTGCATTCTCTGGTGGT+GGG | - | chr3_2:67961659-67961678 | None:intergenic | 50.0% | |
| GCGTAACGTTGTGCATTCTC+TGG | - | chr3_2:67961666-67961685 | None:intergenic | 50.0% | |
| ! | ACTTTTGCGGCGAGTGTAGT+TGG | - | chr3_2:67961688-67961707 | None:intergenic | 50.0% |
| GATGCTGTTGCTGTCTTTGC+TGG | + | chr3_2:67961718-67961737 | Msa0419770:CDS | 50.0% | |
| GTAAAAAACACCGGCAGCGA+TGG | - | chr3_2:67961781-67961800 | None:intergenic | 50.0% | |
| AATCGATCGTGTCTCCGTCA+AGG | + | chr3_2:67961833-67961852 | Msa0419770:CDS | 50.0% | |
| ATCGATCGTGTCTCCGTCAA+GGG | + | chr3_2:67961834-67961853 | Msa0419770:CDS | 50.0% | |
| TTCGACGGCTGATAAAACGC+CGG | - | chr3_2:67962011-67962030 | None:intergenic | 50.0% | |
| TCAGCCGTCGAATAACGTGA+CGG | + | chr3_2:67962019-67962038 | Msa0419770:CDS | 50.0% | |
| ! | CGGCATTGAACTTGCGAGAT+CGG | + | chr3_2:67962067-67962086 | Msa0419770:CDS | 50.0% |
| !! | TCAGAGAGCGTTGGTGAATG+CGG | + | chr3_2:67962091-67962110 | Msa0419770:CDS | 50.0% |
| !! | AGCGTTGGTGAATGCGGTTA+CGG | + | chr3_2:67962097-67962116 | Msa0419770:CDS | 50.0% |
| ! | AACGTTGAAGCTGAGAGCAC+CGG | + | chr3_2:67962136-67962155 | Msa0419770:CDS | 50.0% |
| TTGGAGGATCTGTGAAGACG+TGG | + | chr3_2:67962171-67962190 | Msa0419770:CDS | 50.0% | |
| AGGATCTGTGAAGACGTGGA+AGG | + | chr3_2:67962175-67962194 | Msa0419770:CDS | 50.0% | |
| GGTTGACTGTGATCTAACGG+TGG | + | chr3_2:67962208-67962227 | Msa0419770:CDS | 50.0% | |
| GCAGGCGAAGATTGTTGACA+AGG | + | chr3_2:67962244-67962263 | Msa0419770:CDS | 50.0% | |
| ATGACATATGTTCCGGACGG+CGG | - | chr3_2:67961606-67961625 | None:intergenic | 50.0% | |
| ATATGTCATCCAGCTCCCCA+AGG | + | chr3_2:67961617-67961636 | Msa0419770:CDS | 50.0% | |
| TGCGGTAGGTTTGATCCTTG+GGG | - | chr3_2:67961635-67961654 | None:intergenic | 50.0% | |
| GATGCGGTAGGTTTGATCCT+TGG | - | chr3_2:67961637-67961656 | None:intergenic | 50.0% | |
| GTTGTGCATTCTCTGGTGGT+GGG | - | chr3_2:67961659-67961678 | None:intergenic | 50.0% | |
| GCGTAACGTTGTGCATTCTC+TGG | - | chr3_2:67961666-67961685 | None:intergenic | 50.0% | |
| ! | ACTTTTGCGGCGAGTGTAGT+TGG | - | chr3_2:67961688-67961707 | None:intergenic | 50.0% |
| GATGCTGTTGCTGTCTTTGC+TGG | + | chr3_2:67961718-67961737 | Msa0419770:CDS | 50.0% | |
| GTAAAAAACACCGGCAGCGA+TGG | - | chr3_2:67961781-67961800 | None:intergenic | 50.0% | |
| AATCGATCGTGTCTCCGTCA+AGG | + | chr3_2:67961833-67961852 | Msa0419770:CDS | 50.0% | |
| ATCGATCGTGTCTCCGTCAA+GGG | + | chr3_2:67961834-67961853 | Msa0419770:CDS | 50.0% | |
| TTCGACGGCTGATAAAACGC+CGG | - | chr3_2:67962011-67962030 | None:intergenic | 50.0% | |
| TCAGCCGTCGAATAACGTGA+CGG | + | chr3_2:67962019-67962038 | Msa0419770:CDS | 50.0% | |
| ! | CGGCATTGAACTTGCGAGAT+CGG | + | chr3_2:67962067-67962086 | Msa0419770:CDS | 50.0% |
| !! | TCAGAGAGCGTTGGTGAATG+CGG | + | chr3_2:67962091-67962110 | Msa0419770:CDS | 50.0% |
| !! | AGCGTTGGTGAATGCGGTTA+CGG | + | chr3_2:67962097-67962116 | Msa0419770:CDS | 50.0% |
| ! | AACGTTGAAGCTGAGAGCAC+CGG | + | chr3_2:67962136-67962155 | Msa0419770:CDS | 50.0% |
| TTGGAGGATCTGTGAAGACG+TGG | + | chr3_2:67962171-67962190 | Msa0419770:CDS | 50.0% | |
| AGGATCTGTGAAGACGTGGA+AGG | + | chr3_2:67962175-67962194 | Msa0419770:CDS | 50.0% | |
| GGTTGACTGTGATCTAACGG+TGG | + | chr3_2:67962208-67962227 | Msa0419770:CDS | 50.0% | |
| GCAGGCGAAGATTGTTGACA+AGG | + | chr3_2:67962244-67962263 | Msa0419770:CDS | 50.0% | |
| !! | TGGAAGGTGGAGAGGCGTTA+GGG | - | chr3_2:67961569-67961588 | None:intergenic | 55.0% |
| !! | TTGGAAGGTGGAGAGGCGTT+AGG | - | chr3_2:67961570-67961589 | None:intergenic | 55.0% |
| AGGTTTGATCCTTGGGGAGC+TGG | - | chr3_2:67961629-67961648 | None:intergenic | 55.0% | |
| !! | CATTCTCTGGTGGTGGGATG+CGG | - | chr3_2:67961653-67961672 | None:intergenic | 55.0% |
| CGTTGTGCATTCTCTGGTGG+TGG | - | chr3_2:67961660-67961679 | None:intergenic | 55.0% | |
| ! | GAGATCGGATCAGAGAGCGT+TGG | + | chr3_2:67962082-67962101 | Msa0419770:CDS | 55.0% |
| !! | TGGAAGGTGGAGAGGCGTTA+GGG | - | chr3_2:67961569-67961588 | None:intergenic | 55.0% |
| !! | TTGGAAGGTGGAGAGGCGTT+AGG | - | chr3_2:67961570-67961589 | None:intergenic | 55.0% |
| AGGTTTGATCCTTGGGGAGC+TGG | - | chr3_2:67961629-67961648 | None:intergenic | 55.0% | |
| !! | CATTCTCTGGTGGTGGGATG+CGG | - | chr3_2:67961653-67961672 | None:intergenic | 55.0% |
| CGTTGTGCATTCTCTGGTGG+TGG | - | chr3_2:67961660-67961679 | None:intergenic | 55.0% | |
| ! | GAGATCGGATCAGAGAGCGT+TGG | + | chr3_2:67962082-67962101 | Msa0419770:CDS | 55.0% |
| ! | AGCGGTGTTGGAAGGTGGAG+AGG | - | chr3_2:67961577-67961596 | None:intergenic | 60.0% |
| ! | GATGGAGCGGTGTTGGAAGG+TGG | - | chr3_2:67961582-67961601 | None:intergenic | 60.0% |
| ACACTCGCCGCAAAAGTCGC+CGG | + | chr3_2:67961691-67961710 | Msa0419770:CDS | 60.0% | |
| !! | ATCCGCACCGGCGACTTTTG+CGG | - | chr3_2:67961701-67961720 | None:intergenic | 60.0% |
| GACAGCAACAGCATCCGCAC+CGG | - | chr3_2:67961713-67961732 | None:intergenic | 60.0% | |
| TCTCTGTAACGGCGTCCTGC+CGG | + | chr3_2:67961989-67962008 | Msa0419770:CDS | 60.0% | |
| ACGGCTGATAAAACGCCGGC+AGG | - | chr3_2:67962007-67962026 | None:intergenic | 60.0% | |
| GGTGGATCAGTTAACGGCGC+AGG | + | chr3_2:67962226-67962245 | Msa0419770:CDS | 60.0% | |
| ! | AGCGGTGTTGGAAGGTGGAG+AGG | - | chr3_2:67961577-67961596 | None:intergenic | 60.0% |
| ! | GATGGAGCGGTGTTGGAAGG+TGG | - | chr3_2:67961582-67961601 | None:intergenic | 60.0% |
| ACACTCGCCGCAAAAGTCGC+CGG | + | chr3_2:67961691-67961710 | Msa0419770:CDS | 60.0% | |
| !! | ATCCGCACCGGCGACTTTTG+CGG | - | chr3_2:67961701-67961720 | None:intergenic | 60.0% |
| GACAGCAACAGCATCCGCAC+CGG | - | chr3_2:67961713-67961732 | None:intergenic | 60.0% | |
| TCTCTGTAACGGCGTCCTGC+CGG | + | chr3_2:67961989-67962008 | Msa0419770:CDS | 60.0% | |
| ACGGCTGATAAAACGCCGGC+AGG | - | chr3_2:67962007-67962026 | None:intergenic | 60.0% | |
| GGTGGATCAGTTAACGGCGC+AGG | + | chr3_2:67962226-67962245 | Msa0419770:CDS | 60.0% | |
| ! | GGCGATGGAGCGGTGTTGGA+AGG | - | chr3_2:67961585-67961604 | None:intergenic | 65.0% |
| TATGTTCCGGACGGCGGCGA+TGG | - | chr3_2:67961600-67961619 | None:intergenic | 65.0% | |
| !! | CTCTGGTGGTGGGATGCGGT+AGG | - | chr3_2:67961649-67961668 | None:intergenic | 65.0% |
| GTGCTCATGGCCATCGCTGC+CGG | + | chr3_2:67961768-67961787 | Msa0419770:CDS | 65.0% | |
| ! | GGCGATGGAGCGGTGTTGGA+AGG | - | chr3_2:67961585-67961604 | None:intergenic | 65.0% |
| TATGTTCCGGACGGCGGCGA+TGG | - | chr3_2:67961600-67961619 | None:intergenic | 65.0% | |
| !! | CTCTGGTGGTGGGATGCGGT+AGG | - | chr3_2:67961649-67961668 | None:intergenic | 65.0% |
| GTGCTCATGGCCATCGCTGC+CGG | + | chr3_2:67961768-67961787 | Msa0419770:CDS | 65.0% | |
| CGCCGCAAAAGTCGCCGGTG+CGG | + | chr3_2:67961696-67961715 | Msa0419770:CDS | 70.0% | |
| CGCCGCAAAAGTCGCCGGTG+CGG | + | chr3_2:67961696-67961715 | Msa0419770:CDS | 70.0% | |
| CGGCGGCGATGGAGCGGTGT+TGG | - | chr3_2:67961589-67961608 | None:intergenic | 75.0% | |
| ACCGCTCCATCGCCGCCGTC+CGG | + | chr3_2:67961591-67961610 | Msa0419770:CDS | 75.0% | |
| TCCGGACGGCGGCGATGGAG+CGG | - | chr3_2:67961595-67961614 | None:intergenic | 75.0% | |
| CGGCGGCGATGGAGCGGTGT+TGG | - | chr3_2:67961589-67961608 | None:intergenic | 75.0% | |
| ACCGCTCCATCGCCGCCGTC+CGG | + | chr3_2:67961591-67961610 | Msa0419770:CDS | 75.0% | |
| TCCGGACGGCGGCGATGGAG+CGG | - | chr3_2:67961595-67961614 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 67961549 | 67962298 | 67961549 | ID=Msa0419770;Name=Msa0419770 |
| chr3_2 | mRNA | 67961549 | 67962298 | 67961549 | ID=Msa0419770-mRNA-1;Parent=Msa0419770;Name=Msa0419770-mRNA-1;_AED=0.38;_eAED=0.39;_QI=0|-1|0|1|-1|1|1|0|249 |
| chr3_2 | exon | 67961549 | 67962298 | 67961549 | ID=Msa0419770-mRNA-1:exon:15931;Parent=Msa0419770-mRNA-1 |
| chr3_2 | CDS | 67961549 | 67962298 | 67961549 | ID=Msa0419770-mRNA-1:cds;Parent=Msa0419770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
