AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0423290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0423290 MtrunA17_Chr3g0123971 98.544 206 3 0 1 206 1 206 2.03e-150 415
Msa0423290 MtrunA17_Chr8g0382221 94.686 207 10 1 1 206 1 207 5.16e-144 399
Msa0423290 MtrunA17_Chr5g0400131 84.541 207 31 1 1 206 1 207 1.14e-129 363
Msa0423290 MtrunA17_Chr4g0055081 85.507 207 28 2 1 206 1 206 3.18e-129 362
Msa0423290 MtrunA17_Chr1g0199331 47.561 164 85 1 9 171 31 194 3.79e-51 164
Msa0423290 MtrunA17_Chr5g0433561 44.099 161 90 0 11 171 12 172 1.54e-49 159
Msa0423290 MtrunA17_Chr3g0109721 43.478 161 91 0 11 171 12 172 2.92e-48 156
Msa0423290 MtrunA17_Chr8g0390561 44.375 160 89 0 11 170 11 170 5.44e-47 153
Msa0423290 MtrunA17_Chr8g0349711 40.341 176 103 1 10 185 7 180 5.23e-46 151
Msa0423290 MtrunA17_Chr4g0032201 41.401 157 92 0 10 166 13 169 2.33e-45 149
Msa0423290 MtrunA17_Chr8g0349681 40.909 176 102 1 10 185 176 349 5.11e-44 154
Msa0423290 MtrunA17_Chr8g0349681 42.197 173 94 1 10 182 385 551 7.19e-41 145
Msa0423290 MtrunA17_Chr8g0349681 40.123 162 97 0 10 171 14 175 2.98e-40 144
Msa0423290 MtrunA17_Chr6g0458081 35.533 197 119 2 10 203 7 198 6.72e-44 145
Msa0423290 MtrunA17_Chr8g0351861 37.888 161 100 0 10 170 17 177 8.97e-44 146
Msa0423290 MtrunA17_Chr2g0276931 43.478 161 91 0 10 170 10 170 1.12e-43 145
Msa0423290 MtrunA17_Chr2g0276941 37.158 183 112 1 10 189 16 198 1.93e-43 145
Msa0423290 MtrunA17_Chr8g0346421 42.038 157 91 0 10 166 27 183 4.33e-43 144
Msa0423290 MtrunA17_Chr3g0123821 34.518 197 114 1 10 206 17 198 6.84e-43 143
Msa0423290 MtrunA17_Chr7g0234201 41.558 154 90 0 10 163 14 167 1.10e-42 142
Msa0423290 MtrunA17_Chr2g0290891 37.267 161 101 0 10 170 7 167 1.39e-42 142
Msa0423290 MtrunA17_Chr3g0112681 37.640 178 102 1 10 178 13 190 3.41e-42 141
Msa0423290 MtrunA17_Chr7g0231131 34.896 192 112 1 10 201 16 194 3.42e-42 141
Msa0423290 MtrunA17_Chr8g0381841 34.010 197 115 1 10 206 18 199 8.54e-42 140
Msa0423290 MtrunA17_Chr7g0250531 42.236 161 93 0 10 170 9 169 1.19e-41 139
Msa0423290 MtrunA17_Chr7g0214241 35.961 203 124 2 10 206 16 218 1.53e-41 140
Msa0423290 MtrunA17_Chr4g0055651 41.615 161 94 0 10 170 9 169 1.66e-41 139
Msa0423290 MtrunA17_Chr6g0482721 37.356 174 109 0 10 183 13 186 2.14e-41 139
Msa0423290 MtrunA17_Chr1g0174281 35.266 207 122 3 10 204 16 222 2.51e-41 139
Msa0423290 MtrunA17_Chr7g0275991 38.182 165 98 1 6 166 13 177 4.20e-41 139
Msa0423290 MtrunA17_Chr8g0335471 40.994 161 95 0 10 170 9 169 1.84e-40 136
Msa0423290 MtrunA17_Chr1g0189361 38.217 157 97 0 10 166 15 171 2.60e-40 137
Msa0423290 MtrunA17_Chr4g0030911 36.548 197 122 2 11 204 17 213 4.84e-40 136
Msa0423290 MtrunA17_Chr4g0046261 36.306 157 100 0 10 166 14 170 8.54e-40 135
Msa0423290 MtrunA17_Chr2g0315551 35.669 157 101 0 10 166 14 170 1.18e-39 135
Msa0423290 MtrunA17_Chr1g0212521 36.364 198 122 3 11 204 17 214 1.37e-39 135
Msa0423290 MtrunA17_Chr1g0182321 42.405 158 90 1 11 167 17 174 3.00e-39 134
Msa0423290 MtrunA17_Chr2g0327911 37.056 197 120 3 11 204 17 212 3.25e-39 134
Msa0423290 MtrunA17_Chr1g0182301 42.405 158 90 1 11 167 17 174 4.82e-39 133
Msa0423290 MtrunA17_Chr4g0040781 36.306 157 100 0 10 166 14 170 4.85e-39 133
Msa0423290 MtrunA17_Chr7g0263071 42.405 158 90 1 11 167 17 174 5.09e-39 133
Msa0423290 MtrunA17_Chr2g0283131 36.306 157 100 0 10 166 14 170 8.49e-39 132
Msa0423290 MtrunA17_Chr2g0319951 34.783 161 105 0 10 170 14 174 1.88e-38 132
Msa0423290 MtrunA17_Chr2g0325091 33.663 202 128 2 10 205 12 213 2.44e-38 131
Msa0423290 MtrunA17_Chr4g0004661 39.216 204 110 5 11 206 66 263 2.82e-38 132
Msa0423290 MtrunA17_Chr4g0034871 38.235 204 111 4 11 206 10 206 4.48e-38 130
Msa0423290 MtrunA17_Chr2g0331691 36.946 203 116 3 11 206 12 209 1.79e-37 129
Msa0423290 MtrunA17_Chr8g0383261 33.498 203 121 4 11 206 14 209 5.45e-36 125
Msa0423290 MtrunA17_Chr1g0197331 37.186 199 120 4 10 205 16 212 1.64e-35 124
Msa0423290 MtrunA17_Chr8g0384311 41.509 159 90 3 10 166 14 171 2.02e-35 124
Msa0423290 MtrunA17_Chr1g0201121 34.975 203 120 4 11 206 10 207 2.31e-35 124
Msa0423290 MtrunA17_Chr6g0466301 35.294 204 117 5 11 206 10 206 2.61e-35 123
Msa0423290 MtrunA17_Chr6g0465491 35.294 204 117 5 11 206 10 206 2.61e-35 123
Msa0423290 MtrunA17_Chr1g0180291 36.041 197 123 3 10 204 15 210 2.89e-35 123
Msa0423290 MtrunA17_Chr8g0392931 37.267 161 101 0 10 170 15 175 3.58e-35 123
Msa0423290 MtrunA17_Chr7g0265001 33.333 198 130 2 10 205 17 214 7.68e-34 120
Msa0423290 MtrunA17_Chr3g0130271 39.412 170 99 4 10 176 13 181 1.65e-32 116
Msa0423290 MtrunA17_Chr1g0159481 37.278 169 103 3 10 176 18 185 5.22e-32 115
Msa0423290 MtrunA17_Chr3g0138121 32.143 168 111 3 10 177 14 178 1.02e-24 96.7
Msa0423290 MtrunA17_Chr3g0138111 32.143 168 111 3 10 177 14 178 1.04e-24 96.7
Msa0423290 MtrunA17_Chr3g0138101 32.143 168 111 3 10 177 14 178 1.05e-24 96.7
Msa0423290 MtrunA17_Chr3g0117931 35.758 165 92 5 11 163 10 172 6.69e-22 89.0
Msa0423290 MtrunA17_Chr2g0325101 35.152 165 93 5 11 163 8 170 1.35e-21 87.8
Msa0423290 MtrunA17_Chr6g0486041 34.545 165 94 5 11 163 8 170 3.62e-20 84.3
Msa0423290 MtrunA17_Chr6g0466161 28.191 188 121 5 26 206 7 187 9.60e-20 83.2
Msa0423290 MtrunA17_Chr4g0046211 36.154 130 80 3 11 139 8 135 2.45e-19 80.5
Msa0423290 MtrunA17_Chr8g0371501 30.909 165 100 4 11 163 8 170 4.51e-19 81.3
Msa0423290 MtrunA17_Chr6g0465471 27.660 188 122 5 26 206 7 187 4.76e-19 81.3
Msa0423290 MtrunA17_Chr5g0405791 30.909 165 100 4 11 163 8 170 5.34e-19 80.9
Msa0423290 MtrunA17_Chr4g0037021 31.515 165 99 5 11 163 8 170 1.09e-18 80.1
Msa0423290 MtrunA17_Chr6g0466431 38.542 96 50 1 11 106 10 96 4.95e-18 75.9
Msa0423290 MtrunA17_Chr6g0465611 38.542 96 50 1 11 106 10 96 4.95e-18 75.9
Msa0423290 MtrunA17_Chr5g0443631 25.146 171 122 3 5 170 100 269 1.30e-13 67.8
Msa0423290 MtrunA17_Chr1g0178291 32.051 156 97 4 12 166 431 578 4.42e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0423290 AT5G10260.1 88.406 207 23 1 1 206 1 207 1.09e-136 381
Msa0423290 AT2G22290.1 88.889 207 22 1 1 206 1 207 1.89e-135 378
Msa0423290 AT2G44610.1 86.058 208 27 2 1 206 1 208 4.13e-131 367
Msa0423290 AT4G39890.1 78.972 214 37 3 1 206 1 214 2.58e-117 332
Msa0423290 AT5G64990.1 78.392 199 41 2 10 206 8 206 3.23e-108 309
Msa0423290 AT5G64990.2 75.728 206 41 3 10 206 8 213 2.37e-105 302
Msa0423290 AT4G19640.1 44.720 161 89 0 11 171 12 172 1.12e-50 163
Msa0423290 AT3G54840.1 47.561 164 85 1 9 171 33 196 1.43e-50 162
Msa0423290 AT5G45130.1 44.720 161 89 0 11 171 12 172 1.45e-50 162
Msa0423290 AT3G54840.3 47.826 161 83 1 12 171 2 162 5.73e-50 160
Msa0423290 AT5G45130.2 44.025 159 89 0 13 171 22 180 1.18e-48 158
Msa0423290 AT3G54840.2 48.077 156 80 1 9 163 33 188 1.90e-48 157
Msa0423290 AT1G09630.1 40.252 159 95 0 10 168 13 171 9.24e-44 145
Msa0423290 AT3G11730.1 38.889 198 114 2 10 204 9 202 1.23e-43 145
Msa0423290 AT5G65270.1 38.217 157 97 0 10 166 18 174 1.41e-43 145
Msa0423290 AT1G07410.1 39.752 161 97 0 10 170 13 173 1.61e-43 145
Msa0423290 AT4G17160.1 38.272 162 100 0 9 170 6 167 2.54e-43 144
Msa0423290 AT1G05810.1 37.255 204 119 3 10 206 13 214 2.54e-43 145
Msa0423290 AT4G35860.1 34.615 208 118 3 10 204 7 209 3.40e-43 144
Msa0423290 AT1G05810.2 37.255 204 119 3 10 206 59 260 6.75e-43 145
Msa0423290 AT4G39990.1 36.646 161 102 0 10 170 18 178 1.28e-42 143
Msa0423290 AT4G17170.1 37.267 161 101 0 10 170 7 167 1.65e-42 142
Msa0423290 AT3G12160.1 36.946 203 120 3 10 204 16 218 1.85e-42 142
Msa0423290 AT5G59150.1 39.490 157 95 0 10 166 13 169 2.04e-42 142
Msa0423290 AT2G31680.1 35.122 205 123 3 10 206 13 215 4.25e-42 142
Msa0423290 AT3G46830.1 38.854 157 96 0 10 166 13 169 4.78e-42 141
Msa0423290 AT3G46830.2 38.854 157 96 0 10 166 13 169 4.78e-42 141
Msa0423290 AT3G07410.1 42.208 154 89 0 10 163 13 166 8.04e-42 141
Msa0423290 AT5G47960.1 34.804 204 124 2 10 204 16 219 1.45e-41 140
Msa0423290 AT1G18200.1 40.909 154 91 0 10 163 14 167 2.09e-41 140
Msa0423290 AT1G02130.1 40.994 161 95 0 10 170 9 169 3.56e-41 139
Msa0423290 AT5G47520.1 38.217 157 97 0 10 166 15 171 8.39e-41 138
Msa0423290 AT2G43130.1 38.217 157 97 0 10 166 13 169 1.05e-40 138
Msa0423290 AT3G15060.1 36.646 161 102 0 10 170 14 174 2.24e-40 137
Msa0423290 AT4G17530.1 40.373 161 96 0 10 170 9 169 4.03e-40 136
Msa0423290 AT5G47200.1 40.373 161 96 0 10 170 9 169 4.49e-40 136
Msa0423290 AT4G18430.1 33.010 206 125 3 10 205 14 216 1.10e-39 135
Msa0423290 AT5G60860.1 36.025 161 103 0 10 170 14 174 1.13e-39 135
Msa0423290 AT3G18820.1 38.725 204 110 4 11 206 10 206 1.17e-39 135
Msa0423290 AT1G73640.1 38.961 154 94 0 10 163 14 167 1.74e-39 135
Msa0423290 AT4G19640.2 45.238 126 69 0 11 136 12 137 3.56e-39 132
Msa0423290 AT1G28550.1 37.580 157 98 0 10 166 14 170 5.91e-39 134
Msa0423290 AT5G59840.1 37.056 197 111 3 11 203 17 204 7.74e-39 133
Msa0423290 AT1G16920.1 35.032 157 102 0 10 166 14 170 8.71e-39 133
Msa0423290 AT3G46060.2 41.772 158 91 1 11 167 17 174 2.38e-38 132
Msa0423290 AT3G46060.3 41.772 158 91 1 11 167 17 174 2.38e-38 132
Msa0423290 AT3G46060.1 41.772 158 91 1 11 167 17 174 2.38e-38 132
Msa0423290 AT1G06400.1 36.306 157 100 0 10 166 14 170 2.85e-38 132
Msa0423290 AT1G01200.1 36.190 210 120 5 10 206 29 237 2.87e-38 132
Msa0423290 AT4G19640.3 45.600 125 68 0 11 135 12 136 4.86e-38 130
Msa0423290 AT1G52280.1 38.235 204 111 4 11 206 10 206 6.19e-38 130
Msa0423290 AT3G53610.2 41.772 158 91 1 11 167 17 174 7.05e-38 130
Msa0423290 AT3G53610.3 41.772 158 91 1 11 167 17 174 7.05e-38 130
Msa0423290 AT3G53610.1 41.772 158 91 1 11 167 17 174 7.05e-38 130
Msa0423290 AT5G03520.1 38.889 198 118 3 11 205 17 214 1.03e-37 130
Msa0423290 AT3G16100.1 38.725 204 110 4 11 206 10 206 3.75e-37 129
Msa0423290 AT5G45750.1 35.220 159 99 2 10 166 14 170 3.75e-37 129
Msa0423290 AT2G33870.1 36.306 157 100 0 10 166 14 170 7.30e-37 128
Msa0423290 AT2G21880.1 35.714 210 113 5 11 206 11 212 2.34e-36 127
Msa0423290 AT4G18800.1 34.591 159 100 2 10 166 14 170 5.96e-36 125
Msa0423290 AT1G49300.2 36.275 204 115 4 11 206 10 206 2.27e-35 124
Msa0423290 AT1G49300.1 36.275 204 115 4 11 206 10 206 2.27e-35 124
Msa0423290 AT3G09900.1 43.038 158 89 1 11 167 17 174 4.74e-35 123
Msa0423290 AT4G09720.1 36.275 204 115 7 11 206 10 206 1.15e-34 122
Msa0423290 AT1G22740.1 35.468 203 115 5 11 206 10 203 2.92e-34 121
Msa0423290 AT5G03530.2 34.848 198 126 3 10 205 14 210 8.77e-34 120
Msa0423290 AT5G03530.1 34.848 198 126 3 10 205 14 210 8.77e-34 120
Msa0423290 AT4G09720.4 35.407 209 115 7 11 206 10 211 2.72e-33 119
Msa0423290 AT1G43890.3 37.791 172 104 3 10 179 14 184 3.04e-33 119
Msa0423290 AT1G43890.1 37.791 172 104 3 10 179 14 184 3.04e-33 119
Msa0423290 AT1G43890.2 37.791 172 104 3 10 179 14 184 3.04e-33 119
Msa0423290 AT4G09720.3 34.419 215 115 7 11 206 10 217 1.20e-32 117
Msa0423290 AT4G35860.2 36.364 165 87 3 53 204 4 163 1.61e-32 115
Msa0423290 AT5G39620.1 35.922 206 118 6 9 206 5 204 4.12e-32 115
Msa0423290 AT5G03520.2 37.576 165 100 3 44 205 40 204 4.63e-30 110
Msa0423290 AT3G09910.3 36.869 198 116 5 10 205 14 204 6.64e-30 110
Msa0423290 AT3G09910.1 36.869 198 116 5 10 205 14 204 6.64e-30 110
Msa0423290 AT3G09910.2 36.869 198 116 5 10 205 14 204 6.64e-30 110
Msa0423290 AT2G21880.4 33.846 195 107 5 26 206 1 187 2.07e-29 108
Msa0423290 AT2G21880.3 33.846 195 107 5 26 206 1 187 2.07e-29 108
Msa0423290 AT3G09910.5 38.750 160 95 3 10 167 14 172 3.54e-29 107
Msa0423290 AT3G09910.4 38.750 160 95 3 10 167 14 172 3.54e-29 107
Msa0423290 AT5G59150.2 39.474 114 69 0 53 166 5 118 6.81e-28 103
Msa0423290 AT2G21880.2 32.381 210 112 6 11 206 11 204 6.22e-27 102
Msa0423290 AT4G09720.6 35.593 177 99 7 38 206 3 172 1.85e-25 97.8
Msa0423290 AT4G09720.5 35.593 177 99 7 38 206 3 172 1.85e-25 97.8
Msa0423290 AT4G09720.2 35.593 177 99 7 38 206 3 172 1.85e-25 97.8
Msa0423290 AT5G55080.1 30.409 171 116 3 7 177 11 178 2.09e-25 99.0
Msa0423290 AT5G20020.1 32.143 168 111 3 10 177 14 178 5.72e-25 97.8
Msa0423290 AT5G20010.1 32.143 168 111 3 10 177 14 178 7.86e-25 97.4
Msa0423290 AT5G55190.1 32.143 168 111 3 10 177 14 178 1.72e-24 96.3
Msa0423290 AT2G44690.1 35.152 165 93 5 11 163 20 182 9.66e-23 91.7
Msa0423290 AT3G48040.1 35.758 165 92 5 11 163 10 172 4.52e-21 87.0
Msa0423290 AT4G35020.1 33.333 165 96 5 11 163 8 170 1.68e-20 85.5
Msa0423290 AT4G35020.2 33.333 165 96 5 11 163 8 170 1.68e-20 85.5
Msa0423290 AT4G35020.3 33.333 165 96 5 11 163 8 170 1.68e-20 85.5
Msa0423290 AT1G20090.1 32.727 165 97 4 11 163 7 169 6.67e-20 83.6
Msa0423290 AT1G75840.1 32.727 165 97 4 11 163 8 170 7.18e-20 83.6
Msa0423290 AT5G62880.1 34.545 165 94 5 11 163 10 172 7.47e-20 84.0
Msa0423290 AT3G51300.1 32.121 165 98 4 11 163 8 170 2.03e-19 82.4
Msa0423290 AT4G35950.1 32.727 165 97 4 11 163 8 170 2.05e-19 82.4
Msa0423290 AT2G17800.2 32.727 165 97 4 11 163 8 170 2.67e-19 82.0
Msa0423290 AT2G17800.1 32.727 165 97 4 11 163 8 170 2.67e-19 82.0
Msa0423290 AT3G48040.2 35.897 156 86 5 11 154 10 163 3.59e-19 81.3
Msa0423290 AT4G28950.1 32.515 163 98 5 11 163 8 168 1.79e-18 80.1
Msa0423290 AT5G62880.2 38.525 122 72 3 11 131 10 129 3.70e-18 79.0
Msa0423290 AT5G45970.1 30.909 165 100 5 11 163 8 170 4.12e-18 79.3
Msa0423290 AT4G35020.4 35.965 114 70 3 11 123 8 119 2.06e-15 70.5
Msa0423290 AT4G35020.5 35.965 114 70 3 11 123 8 119 2.06e-15 70.5
Msa0423290 AT5G46025.1 36.782 87 54 1 85 170 20 106 4.15e-15 68.9
Msa0423290 AT3G51290.2 31.818 132 77 4 44 163 641 771 2.46e-11 62.8

Find 55 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCACTTGACACAATTAT+TGG 0.192149 3_2:-73037775 Msa0423290:three_prime_UTR
TATTGGCTTGGCAACTAAAA+TGG 0.194288 3_2:-73037758 Msa0423290:three_prime_UTR
TAAGAAAACGAGTTTGTATT+TGG 0.198916 3_2:+73041946 None:intergenic
GAACGTGAATAACGCGAATC+TGG 0.310056 3_2:+73042026 None:intergenic
CAGTGATGTTATTATCGTTT+TGG 0.337333 3_2:-73039096 Msa0423290:CDS
TCCACCTTGCTGCTCTGTCC+TGG 0.375622 3_2:+73037842 None:intergenic
CATTGGTACAAAAGTACGTT+TGG 0.379590 3_2:+73037714 None:intergenic
GAAGCAATCTTGCGAAATAA+AGG 0.385222 3_2:+73037945 None:intergenic
CAATGCTCTTCAGTTTAGTT+TGG 0.388867 3_2:-73037696 Msa0423290:three_prime_UTR
AAGATTGCTTCAGCCTTGCC+CGG 0.405262 3_2:-73037933 Msa0423290:CDS
TACAAAAGTACGTTTGGGTT+TGG 0.416717 3_2:+73037720 None:intergenic
GAACAGTTCGTTTGCAGCTC+TGG 0.419041 3_2:-73040907 Msa0423290:intron
TAAATTCGACACTACCTATC+AGG 0.424038 3_2:-73041873 Msa0423290:intron
CTCTGTCCTGGATGAATTCA+CGG 0.424353 3_2:+73037854 None:intergenic
TAGTGTTAAGAAATGATTGC+CGG 0.427909 3_2:+73039153 None:intergenic
AGTACGTTTGGGTTTGGCCT+AGG 0.430088 3_2:+73037726 None:intergenic
AACGAACTGTTCGATCTTCA+AGG 0.432629 3_2:+73040918 None:intergenic
TCTACATTTCAGGCGACAAT+TGG 0.437446 3_2:-73040968 Msa0423290:intron
ACTTGACACAATTATTGGCT+TGG 0.447901 3_2:-73037770 Msa0423290:three_prime_UTR
GAAAAGTGGAATAACCTGAT+AGG 0.460045 3_2:+73041859 None:intergenic
GCTCTTCAGTTTAGTTTGGT+AGG 0.461266 3_2:-73037692 Msa0423290:three_prime_UTR
TGCTTCAGCCTTGCCCGGGA+TGG 0.464859 3_2:-73037928 Msa0423290:CDS
ATGCCAAGTCGCGTGAGAGC+GGG 0.477457 3_2:-73038295 Msa0423290:CDS
AACGTGAATAACGCGAATCT+GGG 0.495484 3_2:+73042027 None:intergenic
ATTGGTACAAAAGTACGTTT+GGG 0.496039 3_2:+73037715 None:intergenic
TTCTTAGGTGATCAATCCGT+TGG 0.500123 3_2:-73041929 Msa0423290:CDS
GAAGAATCTCTTATATAACT+TGG 0.525048 3_2:+73040745 None:intergenic
TAACACTAACAAGTGGGTTG+AGG 0.526084 3_2:-73039138 Msa0423290:CDS
AGGACAGAGCAGCAAGGTGG+AGG 0.526096 3_2:-73037840 Msa0423290:CDS
AGATTGCTTCAGCCTTGCCC+GGG 0.531466 3_2:-73037932 Msa0423290:CDS
ATAGAAACCAGTGCAAAAGC+AGG 0.533135 3_2:-73038263 Msa0423290:CDS
GTTGAAAGACTTTCCATCCC+GGG 0.541408 3_2:+73037915 None:intergenic
TAACTCCACAGGGATACTGC+AGG 0.545708 3_2:-73040793 Msa0423290:intron
TAATAGGCAAGTCTCTATAG+AGG 0.546908 3_2:-73038324 Msa0423290:intron
AAGACTTTCCATCCCGGGCA+AGG 0.551250 3_2:+73037920 None:intergenic
GATCCCGCTCTCACGCGACT+TGG 0.552486 3_2:+73038292 None:intergenic
CACTAACAAGTGGGTTGAGG+AGG 0.555833 3_2:-73039135 Msa0423290:CDS
ACGAGTTTGTATTTGGCTAG+AGG 0.566889 3_2:+73041953 None:intergenic
TGTTGAAAGACTTTCCATCC+CGG 0.567013 3_2:+73037914 None:intergenic
CAAACTAAACTGAAGAGCAT+TGG 0.570927 3_2:+73037697 None:intergenic
AAAAGCAGGATTTAATATCA+AGG 0.572165 3_2:-73038249 Msa0423290:intron
ATTTCTTAACACTAACAAGT+GGG 0.572336 3_2:-73039144 Msa0423290:CDS
TTCAACAAAGCAAGAAGACA+TGG 0.574137 3_2:-73037898 Msa0423290:CDS
AATCTACCGTGAATTCATCC+AGG 0.579097 3_2:-73037860 Msa0423290:CDS
CATTTCTTAACACTAACAAG+TGG 0.582798 3_2:-73039145 Msa0423290:CDS
AGGCAAGTCTCTATAGAGGA+AGG 0.591101 3_2:-73038320 Msa0423290:CDS
GATGCCAAGTCGCGTGAGAG+CGG 0.614649 3_2:-73038296 Msa0423290:CDS
AACTCCACAGGGATACTGCA+GGG 0.615234 3_2:-73040792 Msa0423290:intron
TAAAATGGAAATATGCACCT+AGG 0.622590 3_2:-73037743 Msa0423290:three_prime_UTR
TATAAGAGATTCTTCAGTCG+CGG 0.624663 3_2:-73040737 Msa0423290:CDS
TCCAGGACAGAGCAGCAAGG+TGG 0.660114 3_2:-73037843 Msa0423290:CDS
CATGAAGCGAGTGATGATGC+TGG 0.674864 3_2:+73041901 None:intergenic
GAGGAGGTACGTGCAGAACG+AGG 0.683803 3_2:-73039119 Msa0423290:CDS
TCATCCAGGACAGAGCAGCA+AGG 0.690459 3_2:-73037846 Msa0423290:CDS
AAACAGTGCTATTCACAACA+AGG 0.704518 3_2:-73037806 Msa0423290:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAGAAACAAAAA+TGG - chr3_2:73037725-73037744 Msa0423290:three_prime_UTR 10.0%
!! TAATTATTATACATTCTTTA+AGG - chr3_2:73040316-73040335 Msa0423290:intron 10.0%
!! TAGAAATTGAAAAAATGAAA+CGG + chr3_2:73037922-73037941 None:intergenic 15.0%
!! ATTCAAAATATGCAAAAAAT+GGG + chr3_2:73038888-73038907 None:intergenic 15.0%
!!! TAATTTTTTTTCAATCTATG+AGG - chr3_2:73040484-73040503 Msa0423290:intron 15.0%
!! AATAAGTTAGAAATGAAAAG+TGG + chr3_2:73037870-73037889 None:intergenic 20.0%
!! CAATAAAACATTCACTAAAT+AGG + chr3_2:73038086-73038105 None:intergenic 20.0%
!! TTTATTGTGTATTAAGAACA+AGG - chr3_2:73038099-73038118 Msa0423290:intron 20.0%
!!! AATTGTAGGAATTATTTTCA+AGG - chr3_2:73038460-73038479 Msa0423290:intron 20.0%
!!! ATTGTAGGAATTATTTTCAA+GGG - chr3_2:73038461-73038480 Msa0423290:intron 20.0%
!! CATTCAAAATATGCAAAAAA+TGG + chr3_2:73038889-73038908 None:intergenic 20.0%
!! CAAAAAAAGTTAATACTTAC+TGG + chr3_2:73039019-73039038 None:intergenic 20.0%
!! TTTAACGTTAGCAAATAATT+TGG + chr3_2:73039182-73039201 None:intergenic 20.0%
!!! TCATGAACTTATTTTAACTT+TGG + chr3_2:73039533-73039552 None:intergenic 20.0%
!!! CATTGTAATTTGTAAGTTTA+TGG + chr3_2:73039898-73039917 None:intergenic 20.0%
!! TTACAAATTACAATGTTGTA+TGG - chr3_2:73039903-73039922 Msa0423290:intron 20.0%
!! TACAAATTACAATGTTGTAT+GGG - chr3_2:73039904-73039923 Msa0423290:intron 20.0%
!!! TGTTTCGTTTTCAAAAAAAT+TGG - chr3_2:73040829-73040848 Msa0423290:intron 20.0%
!! GTTCTGTTTGAATATTATAA+TGG - chr3_2:73040875-73040894 Msa0423290:intron 20.0%
!! TGTTTGAATATTATAATGGT+AGG - chr3_2:73040879-73040898 Msa0423290:intron 20.0%
!! TATTTCAAAACCATATTTAG+AGG - chr3_2:73041053-73041072 Msa0423290:intron 20.0%
!! TATGAATTTACCTCTAAATA+TGG + chr3_2:73041066-73041085 None:intergenic 20.0%
!! ATATTTAGAGGTAAATTCAT+AGG - chr3_2:73041065-73041084 Msa0423290:intron 20.0%
!! GAAAAAAACAAAATATGATG+AGG + chr3_2:73041284-73041303 None:intergenic 20.0%
!!! ATTTTGTTTTTTTCCTCATA+TGG - chr3_2:73041290-73041309 Msa0423290:intron 20.0%
! TAAGAAAACGAGTTTGTATT+TGG + chr3_2:73037769-73037788 None:intergenic 25.0%
!! AAATACAAACTCGTTTTCTT+AGG - chr3_2:73037768-73037787 Msa0423290:three_prime_UTR 25.0%
!! ATTTTATTCTGCATTGTCTT+TGG - chr3_2:73038266-73038285 Msa0423290:CDS 25.0%
! TAAGCAAAATTGTTTCGATT+AGG - chr3_2:73038329-73038348 Msa0423290:intron 25.0%
!!! TTGTAGGAATTATTTTCAAG+GGG - chr3_2:73038462-73038481 Msa0423290:intron 25.0%
! GAAGAATCTCTTATATAACT+TGG + chr3_2:73038970-73038989 None:intergenic 25.0%
! CAAAAAAAGTTAATACTGAC+TGG + chr3_2:73039085-73039104 None:intergenic 25.0%
! AAGAAAACAATACAATAGCA+TGG - chr3_2:73039112-73039131 Msa0423290:CDS 25.0%
!!! GTCTTACATTAAAAGTACTT+CGG - chr3_2:73039622-73039641 Msa0423290:intron 25.0%
! AAACTAAATGACCGATATAT+AGG - chr3_2:73039761-73039780 Msa0423290:intron 25.0%
!! AAGCTTAAACGAAGATTTTA+CGG - chr3_2:73039867-73039886 Msa0423290:intron 25.0%
! AGGAACAAAAATACATTTCT+TGG - chr3_2:73040023-73040042 Msa0423290:intron 25.0%
! TGATATCATAATTTCTGTCA+TGG + chr3_2:73040188-73040207 None:intergenic 25.0%
! ATTATGATATCATACGATCT+AGG - chr3_2:73040196-73040215 Msa0423290:intron 25.0%
! ATTTCTTAACACTAACAAGT+GGG - chr3_2:73040568-73040587 Msa0423290:intron 25.0%
! AAACTGATCTTGTTGAAAAA+AGG - chr3_2:73040648-73040667 Msa0423290:intron 25.0%
! GAATTATAGCAAACATAGTA+TGG + chr3_2:73040808-73040827 None:intergenic 25.0%
! GTAATACTAAAAATTCGTAC+AGG - chr3_2:73041000-73041019 Msa0423290:intron 25.0%
! GAAATAACAACTTCAAAGTA+TGG + chr3_2:73041039-73041058 None:intergenic 25.0%
! TATATCCAACAATATCATCA+TGG + chr3_2:73041092-73041111 None:intergenic 25.0%
! ATTGTTGGATATAATGTTTC+CGG - chr3_2:73041099-73041118 Msa0423290:intron 25.0%
! TTGCTATAAGAAGAATTGTA+TGG + chr3_2:73041323-73041342 None:intergenic 25.0%
! AAGCATCATAATGTCATTAT+AGG + chr3_2:73041368-73041387 None:intergenic 25.0%
! TGACATTATGATGCTTTAAT+AGG - chr3_2:73041372-73041391 Msa0423290:intron 25.0%
! AAAAGCAGGATTTAATATCA+AGG - chr3_2:73041463-73041482 Msa0423290:intron 25.0%
! TACATCATACATGAACATAT+GGG + chr3_2:73041516-73041535 None:intergenic 25.0%
! ATACATCATACATGAACATA+TGG + chr3_2:73041517-73041536 None:intergenic 25.0%
TTGTGTATTAAGAACAAGGA+TGG - chr3_2:73038103-73038122 Msa0423290:intron 30.0%
! ATTATTTTCCTGTTGCGTAT+AGG - chr3_2:73038153-73038172 Msa0423290:intron 30.0%
! CGTGTTTAAAATACGTGATT+AGG - chr3_2:73038212-73038231 Msa0423290:intron 30.0%
TTAGGACTTGATTAGGAATT+AGG - chr3_2:73038230-73038249 Msa0423290:intron 30.0%
! TTTGGAGTATTTATGAACAG+AGG - chr3_2:73038284-73038303 Msa0423290:CDS 30.0%
! TTGGAGTATTTATGAACAGA+GGG - chr3_2:73038285-73038304 Msa0423290:CDS 30.0%
AGGGAATAGATCTAAATTCA+AGG - chr3_2:73038304-73038323 Msa0423290:CDS 30.0%
! GAGCTTTTATTAGCAATTGT+AGG - chr3_2:73038446-73038465 Msa0423290:intron 30.0%
TATTACCAACTTATCATGCA+AGG - chr3_2:73038613-73038632 Msa0423290:intron 30.0%
! TCTTCTTTGTCATGTTGTTT+CGG - chr3_2:73038656-73038675 Msa0423290:intron 30.0%
TTTGTAATCGTCTACATTTC+AGG - chr3_2:73038734-73038753 Msa0423290:intron 30.0%
TTGTAGTAGATTTCACATTG+TGG - chr3_2:73038846-73038865 Msa0423290:intron 30.0%
!!! TAGTCTATTTTAACTCCACA+GGG - chr3_2:73038909-73038928 Msa0423290:intron 30.0%
TTTGTTCTTAAGAGATTCTC+CGG - chr3_2:73039035-73039054 Msa0423290:intron 30.0%
CATAACTAAAAACCATATGC+TGG + chr3_2:73039255-73039274 None:intergenic 30.0%
!!! CAGCATATGGTTTTTAGTTA+TGG - chr3_2:73039253-73039272 Msa0423290:intron 30.0%
!!! TCTTTGTTTTTCTCTCAACT+TGG + chr3_2:73039283-73039302 None:intergenic 30.0%
! GAATTAACAAAGTTGACTCT+TGG + chr3_2:73039368-73039387 None:intergenic 30.0%
AGAGTCAACTTTGTTAATTC+TGG - chr3_2:73039368-73039387 Msa0423290:intron 30.0%
! ATTGTGTTCTTCTTTTTGTG+TGG - chr3_2:73039425-73039444 Msa0423290:intron 30.0%
! AAAGTAATGGAAGTTTGTGA+TGG - chr3_2:73039479-73039498 Msa0423290:intron 30.0%
!! TTAGCTTTAGAGGTGAAAAT+TGG - chr3_2:73039580-73039599 Msa0423290:intron 30.0%
!! ATATCGGTCATTTAGTTTGA+TGG + chr3_2:73039759-73039778 None:intergenic 30.0%
AAGTGGTAGTTTATATCACA+GGG + chr3_2:73039847-73039866 None:intergenic 30.0%
TAAGTGGTAGTTTATATCAC+AGG + chr3_2:73039848-73039867 None:intergenic 30.0%
AATCTTCGTTTAAGCTTAAG+TGG + chr3_2:73039864-73039883 None:intergenic 30.0%
AAGAATGTTACAACGATAAG+TGG - chr3_2:73039983-73040002 Msa0423290:intron 30.0%
TGGTTTACACAAGATAAGAT+AGG - chr3_2:73040003-73040022 Msa0423290:intron 30.0%
CTATACTCCATTTAGTCAAT+CGG + chr3_2:73040081-73040100 None:intergenic 30.0%
GGCGAGTTAAGAAAAATTAT+AGG - chr3_2:73040112-73040131 Msa0423290:intron 30.0%
CTCTAAATCTCTCATTAGTT+TGG + chr3_2:73040138-73040157 None:intergenic 30.0%
CACTGAATAATTGAAAACGT+CGG - chr3_2:73040382-73040401 Msa0423290:intron 30.0%
AATAGAAAACACACACAAAG+AGG + chr3_2:73040422-73040441 None:intergenic 30.0%
!! CAGCTTGCTAAGAAATTTAA+TGG + chr3_2:73040527-73040546 None:intergenic 30.0%
TAGTGTTAAGAAATGATTGC+CGG + chr3_2:73040562-73040581 None:intergenic 30.0%
CATTTCTTAACACTAACAAG+TGG - chr3_2:73040567-73040586 Msa0423290:intron 30.0%
! CAGTGATGTTATTATCGTTT+TGG - chr3_2:73040616-73040635 Msa0423290:intron 30.0%
!! GATGTTATTATCGTTTTGGT+TGG - chr3_2:73040620-73040639 Msa0423290:intron 30.0%
TTATTGCCTAACAACTGAAT+TGG - chr3_2:73040917-73040936 Msa0423290:CDS 30.0%
ACTTAACCAATTCAGTTGTT+AGG + chr3_2:73040926-73040945 None:intergenic 30.0%
! ACTTCAAAGTATGGCAATTT+TGG + chr3_2:73041030-73041049 None:intergenic 30.0%
ACATCATACATGAACATATG+GGG + chr3_2:73041515-73041534 None:intergenic 30.0%
TGTTCACTTGACACAATTAT+TGG - chr3_2:73041937-73041956 Msa0423290:CDS 30.0%
TAAAATGGAAATATGCACCT+AGG - chr3_2:73041969-73041988 Msa0423290:CDS 30.0%
! ATTGGTACAAAAGTACGTTT+GGG + chr3_2:73042000-73042019 None:intergenic 30.0%
TAAATTCGACACTACCTATC+AGG - chr3_2:73037839-73037858 Msa0423290:CDS 35.0%
GAAAAGTGGAATAACCTGAT+AGG + chr3_2:73037856-73037875 None:intergenic 35.0%
! GATATTTGTGTGATTTTGCG+AGG - chr3_2:73038005-73038024 Msa0423290:intron 35.0%
TACGTGATTAGGACTTGATT+AGG - chr3_2:73038223-73038242 Msa0423290:intron 35.0%
ATGCAGAATAAAATATCCGC+TGG + chr3_2:73038260-73038279 None:intergenic 35.0%
CACAAACAAGATACGAGTAT+TGG - chr3_2:73038523-73038542 Msa0423290:intron 35.0%
! GATAAGTATCGTAACTGATG+CGG - chr3_2:73038545-73038564 Msa0423290:intron 35.0%
AGTAACCTTGCATGATAAGT+TGG + chr3_2:73038621-73038640 None:intergenic 35.0%
TAGATCCTAACAGTAGGAAA+GGG + chr3_2:73038707-73038726 None:intergenic 35.0%
TTTGTCTAGATCCTAACAGT+AGG + chr3_2:73038713-73038732 None:intergenic 35.0%
!!! GTAGTCTATTTTAACTCCAC+AGG - chr3_2:73038908-73038927 Msa0423290:intron 35.0%
TATAAGAGATTCTTCAGTCG+CGG - chr3_2:73038975-73038994 Msa0423290:intron 35.0%
TCATATACAATAACCGCAAC+CGG + chr3_2:73039057-73039076 None:intergenic 35.0%
ACTAAAAACCATATGCTGGA+TGG + chr3_2:73039251-73039270 None:intergenic 35.0%
AACACAATGACATTGTCTCT+TGG + chr3_2:73039413-73039432 None:intergenic 35.0%
GTGGATAATATAGTCCTAGT+TGG - chr3_2:73039444-73039463 Msa0423290:intron 35.0%
TGAAGTACAAGTTTAGCAAG+AGG - chr3_2:73039550-73039569 Msa0423290:intron 35.0%
ATAGAGAATAGAGAGAGACA+TGG + chr3_2:73039726-73039745 None:intergenic 35.0%
!! ATTTAGTTTGATGGAGCTGT+CGG + chr3_2:73039750-73039769 None:intergenic 35.0%
AGTTGGCATCTCCTATATAT+CGG + chr3_2:73039775-73039794 None:intergenic 35.0%
ATATAGGAGATGCCAACTAT+AGG - chr3_2:73039777-73039796 Msa0423290:intron 35.0%
AGCCAAAAAGAAAGATGTCT+CGG - chr3_2:73039948-73039967 Msa0423290:intron 35.0%
!! AAAAGCACCGATTGACTAAA+TGG - chr3_2:73040071-73040090 Msa0423290:intron 35.0%
ATGGAGTATAGTCCAACATA+AGG - chr3_2:73040090-73040109 Msa0423290:intron 35.0%
TGGAGTATAGTCCAACATAA+GGG - chr3_2:73040091-73040110 Msa0423290:intron 35.0%
CATGGATCAAGTGTTAAGAT+AGG + chr3_2:73040170-73040189 None:intergenic 35.0%
AACAGAAATAACAGCAAAGC+AGG + chr3_2:73040242-73040261 None:intergenic 35.0%
TTGTTGAAAAAAGGTGAGCA+GGG - chr3_2:73040657-73040676 Msa0423290:intron 35.0%
!! CAGTTGATAGGTAACTATCA+AGG + chr3_2:73040712-73040731 None:intergenic 35.0%
! CTTGATAGTTACCTATCAAC+TGG - chr3_2:73040710-73040729 Msa0423290:intron 35.0%
TAGGTCCATGATGATATTGT+TGG - chr3_2:73041084-73041103 Msa0423290:intron 35.0%
TAATAGGCAAGTCTCTATAG+AGG - chr3_2:73041388-73041407 Msa0423290:intron 35.0%
!! ATTAAATCCTGCTTTTGCAC+TGG + chr3_2:73041459-73041478 None:intergenic 35.0%
AGACAGACTTCAGAATTCAA+AGG + chr3_2:73041551-73041570 None:intergenic 35.0%
! ATCTAAAAGTATGCCATCCA+TGG - chr3_2:73041628-73041647 Msa0423290:intron 35.0%
! ACAAGTTTGAAATCCATGGA+TGG + chr3_2:73041644-73041663 None:intergenic 35.0%
! GACAACAAGTTTGAAATCCA+TGG + chr3_2:73041648-73041667 None:intergenic 35.0%
!! CTGCAACATTTTAATCACTC+GGG + chr3_2:73041747-73041766 None:intergenic 35.0%
!! GCTGCAACATTTTAATCACT+CGG + chr3_2:73041748-73041767 None:intergenic 35.0%
GAAGCAATCTTGCGAAATAA+AGG + chr3_2:73041770-73041789 None:intergenic 35.0%
TTCAACAAAGCAAGAAGACA+TGG - chr3_2:73041814-73041833 Msa0423290:intron 35.0%
! AAACAGTGCTATTCACAACA+AGG - chr3_2:73041906-73041925 Msa0423290:CDS 35.0%
! ACTTGACACAATTATTGGCT+TGG - chr3_2:73041942-73041961 Msa0423290:CDS 35.0%
!! TATTGGCTTGGCAACTAAAA+TGG - chr3_2:73041954-73041973 Msa0423290:CDS 35.0%
! TACAAAAGTACGTTTGGGTT+TGG + chr3_2:73041995-73042014 None:intergenic 35.0%
! CATTGGTACAAAAGTACGTT+TGG + chr3_2:73042001-73042020 None:intergenic 35.0%
! CAAACTAAACTGAAGAGCAT+TGG + chr3_2:73042018-73042037 None:intergenic 35.0%
CAATGCTCTTCAGTTTAGTT+TGG - chr3_2:73042016-73042035 Msa0423290:five_prime_UTR 35.0%
AACGTGAATAACGCGAATCT+GGG + chr3_2:73037688-73037707 None:intergenic 40.0%
ACGAGTTTGTATTTGGCTAG+AGG + chr3_2:73037762-73037781 None:intergenic 40.0%
TTCTTAGGTGATCAATCCGT+TGG - chr3_2:73037783-73037802 Msa0423290:three_prime_UTR 40.0%
!!! GATGATGCTGGTTTTACCAA+CGG + chr3_2:73037802-73037821 None:intergenic 40.0%
! TTGTGTGATTTTGCGAGGAT+CGG - chr3_2:73038010-73038029 Msa0423290:intron 40.0%
GGACTTGATTAGGAATTAGG+AGG - chr3_2:73038233-73038252 Msa0423290:intron 40.0%
AATGCACGAGTAAAGCAAGA+AGG + chr3_2:73038379-73038398 None:intergenic 40.0%
!! CGTTAAAGAAGTGCTAGAGT+AGG - chr3_2:73038418-73038437 Msa0423290:intron 40.0%
TTGTGCTTCGTCGACAAAAA+TGG + chr3_2:73038508-73038527 None:intergenic 40.0%
AGATCCTAACAGTAGGAAAG+GGG + chr3_2:73038706-73038725 None:intergenic 40.0%
CTAGATCCTAACAGTAGGAA+AGG + chr3_2:73038708-73038727 None:intergenic 40.0%
TCTACATTTCAGGCGACAAT+TGG - chr3_2:73038744-73038763 Msa0423290:intron 40.0%
AACGAACTGTTCGATCTTCA+AGG + chr3_2:73038797-73038816 None:intergenic 40.0%
AACTCTCTTCTGATAGGACA+TGG + chr3_2:73039225-73039244 None:intergenic 40.0%
TGGTCAAACTCTCTTCTGAT+AGG + chr3_2:73039231-73039250 None:intergenic 40.0%
ATATAGTCCTAGTTGGAGAC+TGG - chr3_2:73039451-73039470 Msa0423290:intron 40.0%
GAGACTGGAGAAGAAAGTAA+TGG - chr3_2:73039466-73039485 Msa0423290:intron 40.0%
! GTTTGTGATGGAGTCAGTAT+TGG - chr3_2:73039491-73039510 Msa0423290:intron 40.0%
GAATTGAGAGAGATCTGATG+AGG - chr3_2:73039697-73039716 Msa0423290:intron 40.0%
CCAACTATAGGATCCAAGTA+GGG - chr3_2:73039789-73039808 Msa0423290:intron 40.0%
! TCTATTTTGTCCACCCTACT+TGG + chr3_2:73039805-73039824 None:intergenic 40.0%
AAGTAGGGTGGACAAAATAG+AGG - chr3_2:73039804-73039823 Msa0423290:intron 40.0%
! CACCGAGACATCTTTCTTTT+TGG + chr3_2:73039953-73039972 None:intergenic 40.0%
TTCTTAACTCGCCCTTATGT+TGG + chr3_2:73040105-73040124 None:intergenic 40.0%
ACACAAAGAGGTAGAGAACA+GGG + chr3_2:73040410-73040429 None:intergenic 40.0%
!! TAACACTAACAAGTGGGTTG+AGG - chr3_2:73040574-73040593 Msa0423290:intron 40.0%
CTTGTTGAAAAAAGGTGAGC+AGG - chr3_2:73040656-73040675 Msa0423290:intron 40.0%
AAAATGCTCAATGTCCTGAC+TGG + chr3_2:73040689-73040708 None:intergenic 40.0%
AAGTCAGCAAACCAGTTGAT+AGG + chr3_2:73040724-73040743 None:intergenic 40.0%
ACATCACATGCAAAGCTAAC+CGG + chr3_2:73041121-73041140 None:intergenic 40.0%
GTATGGATATGTGCCATATG+AGG + chr3_2:73041306-73041325 None:intergenic 40.0%
ATAGAAACCAGTGCAAAAGC+AGG - chr3_2:73041449-73041468 Msa0423290:intron 40.0%
ATGCAGCTGAGAATCATTCA+AGG + chr3_2:73041599-73041618 None:intergenic 40.0%
TGTTGAAAGACTTTCCATCC+CGG + chr3_2:73041801-73041820 None:intergenic 40.0%
AATCTACCGTGAATTCATCC+AGG - chr3_2:73041852-73041871 Msa0423290:intron 40.0%
!! GCTCTTCAGTTTAGTTTGGT+AGG - chr3_2:73042020-73042039 Msa0423290:five_prime_UTR 40.0%
GAACGTGAATAACGCGAATC+TGG + chr3_2:73037689-73037708 None:intergenic 45.0%
GCTTGTTTCCTATACGCAAC+AGG + chr3_2:73038164-73038183 None:intergenic 45.0%
TTAGGAATTAGGAGGACCAG+CGG - chr3_2:73038241-73038260 Msa0423290:intron 45.0%
TTTCCCCCTTTCCTACTGTT+AGG - chr3_2:73038699-73038718 Msa0423290:intron 45.0%
GATCCTAACAGTAGGAAAGG+GGG + chr3_2:73038705-73038724 None:intergenic 45.0%
CTTAAGAGATTCTCCGGTTG+CGG - chr3_2:73039041-73039060 Msa0423290:intron 45.0%
GAGTTTGACCATCCAGCATA+TGG - chr3_2:73039240-73039259 Msa0423290:intron 45.0%
TTCTTCTCCAGTCTCCAACT+AGG + chr3_2:73039461-73039480 None:intergenic 45.0%
!! AGGCACGAGTTTAGCTTTAG+AGG - chr3_2:73039570-73039589 Msa0423290:intron 45.0%
GCCAACTATAGGATCCAAGT+AGG - chr3_2:73039788-73039807 Msa0423290:intron 45.0%
CCCTACTTGGATCCTATAGT+TGG + chr3_2:73039792-73039811 None:intergenic 45.0%
ACTATAGGATCCAAGTAGGG+TGG - chr3_2:73039792-73039811 Msa0423290:intron 45.0%
TTCTTGGAAGATAGCACGTG+TGG - chr3_2:73040039-73040058 Msa0423290:intron 45.0%
AAAGCAGGCTTCCAATAGCT+GGG + chr3_2:73040227-73040246 None:intergenic 45.0%
CACACAAAGAGGTAGAGAAC+AGG + chr3_2:73040411-73040430 None:intergenic 45.0%
AGGCAAGTCTCTATAGAGGA+AGG - chr3_2:73041392-73041411 Msa0423290:intron 45.0%
CATGAACATATGGGGTGACT+CGG + chr3_2:73041507-73041526 None:intergenic 45.0%
GTTGAAAGACTTTCCATCCC+GGG + chr3_2:73041800-73041819 None:intergenic 45.0%
CTCTGTCCTGGATGAATTCA+CGG + chr3_2:73041861-73041880 None:intergenic 45.0%
! CATGAAGCGAGTGATGATGC+TGG + chr3_2:73037814-73037833 None:intergenic 50.0%
ACTGATGCGGCGATACGTTA+AGG - chr3_2:73038558-73038577 Msa0423290:intron 50.0%
GAACAGTTCGTTTGCAGCTC+TGG - chr3_2:73038805-73038824 Msa0423290:intron 50.0%
TAACTCCACAGGGATACTGC+AGG - chr3_2:73038919-73038938 Msa0423290:intron 50.0%
AACTCCACAGGGATACTGCA+GGG - chr3_2:73038920-73038939 Msa0423290:intron 50.0%
TCTAGGTACTCCCCAGCTAT+TGG - chr3_2:73040213-73040232 Msa0423290:intron 50.0%
AAGCAGGCTTCCAATAGCTG+GGG + chr3_2:73040226-73040245 None:intergenic 50.0%
CAAAGCAGGCTTCCAATAGC+TGG + chr3_2:73040228-73040247 None:intergenic 50.0%
CAAGCTGTTCTGATGCAGAC+CGG - chr3_2:73040540-73040559 Msa0423290:intron 50.0%
!! CACTAACAAGTGGGTTGAGG+AGG - chr3_2:73040577-73040596 Msa0423290:intron 50.0%
AAGATTGCTTCAGCCTTGCC+CGG - chr3_2:73041779-73041798 Msa0423290:intron 50.0%
! AGTACGTTTGGGTTTGGCCT+AGG + chr3_2:73041989-73042008 None:intergenic 50.0%
AGATTGCTTCAGCCTTGCCC+GGG - chr3_2:73041780-73041799 Msa0423290:intron 55.0%
AAGACTTTCCATCCCGGGCA+AGG + chr3_2:73041795-73041814 None:intergenic 55.0%
TCATCCAGGACAGAGCAGCA+AGG - chr3_2:73041866-73041885 Msa0423290:intron 55.0%
CTTGCCCTGCAGTATCCCTG+TGG + chr3_2:73038927-73038946 None:intergenic 60.0%
! GAGGAGGTACGTGCAGAACG+AGG - chr3_2:73040593-73040612 Msa0423290:intron 60.0%
GAGCAGGGAGTCAACCAGTC+AGG - chr3_2:73040672-73040691 Msa0423290:intron 60.0%
GATGCCAAGTCGCGTGAGAG+CGG - chr3_2:73041416-73041435 Msa0423290:intron 60.0%
ATGCCAAGTCGCGTGAGAGC+GGG - chr3_2:73041417-73041436 Msa0423290:intron 60.0%
TCCAGGACAGAGCAGCAAGG+TGG - chr3_2:73041869-73041888 Msa0423290:intron 60.0%
TCCACCTTGCTGCTCTGTCC+TGG + chr3_2:73041873-73041892 None:intergenic 60.0%
AGGACAGAGCAGCAAGGTGG+AGG - chr3_2:73041872-73041891 Msa0423290:intron 60.0%
GATCCCGCTCTCACGCGACT+TGG + chr3_2:73041423-73041442 None:intergenic 65.0%
TGCTTCAGCCTTGCCCGGGA+TGG - chr3_2:73041784-73041803 Msa0423290:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 73037633 73042101 73037633 ID=Msa0423290;Name=Msa0423290
chr3_2 mRNA 73037633 73042101 73037633 ID=Msa0423290-mRNA-1;Parent=Msa0423290;Name=Msa0423290-mRNA-1;_AED=0.08;_eAED=0.08;_QI=111|0.8|0.66|1|1|1|6|194|206
chr3_2 exon 73037633 73037967 73037633 ID=Msa0423290-mRNA-1:exon:18155;Parent=Msa0423290-mRNA-1
chr3_2 exon 73038250 73038340 73038250 ID=Msa0423290-mRNA-1:exon:18154;Parent=Msa0423290-mRNA-1
chr3_2 exon 73039065 73039176 73039065 ID=Msa0423290-mRNA-1:exon:18153;Parent=Msa0423290-mRNA-1
chr3_2 exon 73040716 73040804 73040716 ID=Msa0423290-mRNA-1:exon:18152;Parent=Msa0423290-mRNA-1
chr3_2 exon 73040908 73040978 73040908 ID=Msa0423290-mRNA-1:exon:18151;Parent=Msa0423290-mRNA-1
chr3_2 exon 73041874 73042101 73041874 ID=Msa0423290-mRNA-1:exon:18150;Parent=Msa0423290-mRNA-1
chr3_2 five_prime_UTR 73041991 73042101 73041991 ID=Msa0423290-mRNA-1:five_prime_utr;Parent=Msa0423290-mRNA-1
chr3_2 CDS 73041874 73041990 73041874 ID=Msa0423290-mRNA-1:cds;Parent=Msa0423290-mRNA-1
chr3_2 CDS 73040908 73040978 73040908 ID=Msa0423290-mRNA-1:cds;Parent=Msa0423290-mRNA-1
chr3_2 CDS 73040716 73040804 73040716 ID=Msa0423290-mRNA-1:cds;Parent=Msa0423290-mRNA-1
chr3_2 CDS 73039065 73039176 73039065 ID=Msa0423290-mRNA-1:cds;Parent=Msa0423290-mRNA-1
chr3_2 CDS 73038250 73038340 73038250 ID=Msa0423290-mRNA-1:cds;Parent=Msa0423290-mRNA-1
chr3_2 CDS 73037827 73037967 73037827 ID=Msa0423290-mRNA-1:cds;Parent=Msa0423290-mRNA-1
chr3_2 three_prime_UTR 73037633 73037826 73037633 ID=Msa0423290-mRNA-1:three_prime_utr;Parent=Msa0423290-mRNA-1
Gene Sequence

>Msa0423290

ATGGTGACTGTATCACCTCTAGCCAAATACAAACTCGTTTTCTTAGGTGATCAATCCGTTGGTAAAACCAGCATCATCACTCGCTTCATGTATGATAAATTCGACACTACCTATCAGGCGACAATTGGTATTGACTTTTTGTCGAAAACAATGTACCTTGAAGATCGAACAGTTCGTTTGCAGCTCTGGGATACTGCAGGGCAAGAAAGATTTAGAAGTCTCATTCCAAGTTATATAAGAGATTCTTCAGTCGCGGTTATTGTGTATGATGTTGCCAACCGGCAATCATTTCTTAACACTAACAAGTGGGTTGAGGAGGTACGTGCAGAACGAGGCAGTGATGTTATTATCGTTTTGGTTGGAAACAAAACTGATCTTGTTGAAAAAAGGCAAGTCTCTATAGAGGAAGGAGATGCCAAGTCGCGTGAGAGCGGGATCATGTTTATAGAAACCAGTGCAAAAGCAGGATTTAATATCAAGCCTTTATTTCGCAAGATTGCTTCAGCCTTGCCCGGGATGGAAAGTCTTTCAACAAAGCAAGAAGACATGGTTGATGTAAATTTAAAATCTACCGTGAATTCATCCAGGACAGAGCAGCAAGGTGGAGGTTGTTCGTGCTAA
Protein sequence

>Msa0423290

MVTVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTNKWVEEVRAERGSDVIIVLVGNKTDLVEKRQVSIEEGDAKSRESGIMFIETSAKAGFNIKPLFRKIASALPGMESLSTKQEDMVDVNLKSTVNSSRTEQQGGGCSC*