AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0469370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469370 MtrunA17_Chr3g0123971 98.544 206 3 0 1 206 1 206 2.03e-150 415
Msa0469370 MtrunA17_Chr8g0382221 94.686 207 10 1 1 206 1 207 5.16e-144 399
Msa0469370 MtrunA17_Chr5g0400131 84.541 207 31 1 1 206 1 207 1.14e-129 363
Msa0469370 MtrunA17_Chr4g0055081 85.507 207 28 2 1 206 1 206 3.18e-129 362
Msa0469370 MtrunA17_Chr1g0199331 47.561 164 85 1 9 171 31 194 3.79e-51 164
Msa0469370 MtrunA17_Chr5g0433561 44.099 161 90 0 11 171 12 172 1.54e-49 159
Msa0469370 MtrunA17_Chr3g0109721 43.478 161 91 0 11 171 12 172 2.92e-48 156
Msa0469370 MtrunA17_Chr8g0390561 44.375 160 89 0 11 170 11 170 5.44e-47 153
Msa0469370 MtrunA17_Chr8g0349711 40.341 176 103 1 10 185 7 180 5.23e-46 151
Msa0469370 MtrunA17_Chr4g0032201 41.401 157 92 0 10 166 13 169 2.33e-45 149
Msa0469370 MtrunA17_Chr8g0349681 40.909 176 102 1 10 185 176 349 5.11e-44 154
Msa0469370 MtrunA17_Chr8g0349681 42.197 173 94 1 10 182 385 551 7.19e-41 145
Msa0469370 MtrunA17_Chr8g0349681 40.123 162 97 0 10 171 14 175 2.98e-40 144
Msa0469370 MtrunA17_Chr6g0458081 35.533 197 119 2 10 203 7 198 6.72e-44 145
Msa0469370 MtrunA17_Chr8g0351861 37.888 161 100 0 10 170 17 177 8.97e-44 146
Msa0469370 MtrunA17_Chr2g0276931 43.478 161 91 0 10 170 10 170 1.12e-43 145
Msa0469370 MtrunA17_Chr2g0276941 37.158 183 112 1 10 189 16 198 1.93e-43 145
Msa0469370 MtrunA17_Chr8g0346421 42.038 157 91 0 10 166 27 183 4.33e-43 144
Msa0469370 MtrunA17_Chr3g0123821 34.518 197 114 1 10 206 17 198 6.84e-43 143
Msa0469370 MtrunA17_Chr7g0234201 41.558 154 90 0 10 163 14 167 1.10e-42 142
Msa0469370 MtrunA17_Chr2g0290891 37.267 161 101 0 10 170 7 167 1.39e-42 142
Msa0469370 MtrunA17_Chr3g0112681 37.640 178 102 1 10 178 13 190 3.41e-42 141
Msa0469370 MtrunA17_Chr7g0231131 34.896 192 112 1 10 201 16 194 3.42e-42 141
Msa0469370 MtrunA17_Chr8g0381841 34.010 197 115 1 10 206 18 199 8.54e-42 140
Msa0469370 MtrunA17_Chr7g0250531 42.236 161 93 0 10 170 9 169 1.19e-41 139
Msa0469370 MtrunA17_Chr7g0214241 35.961 203 124 2 10 206 16 218 1.53e-41 140
Msa0469370 MtrunA17_Chr4g0055651 41.615 161 94 0 10 170 9 169 1.66e-41 139
Msa0469370 MtrunA17_Chr6g0482721 37.356 174 109 0 10 183 13 186 2.14e-41 139
Msa0469370 MtrunA17_Chr1g0174281 35.266 207 122 3 10 204 16 222 2.51e-41 139
Msa0469370 MtrunA17_Chr7g0275991 38.182 165 98 1 6 166 13 177 4.20e-41 139
Msa0469370 MtrunA17_Chr8g0335471 40.994 161 95 0 10 170 9 169 1.84e-40 136
Msa0469370 MtrunA17_Chr1g0189361 38.217 157 97 0 10 166 15 171 2.60e-40 137
Msa0469370 MtrunA17_Chr4g0030911 36.548 197 122 2 11 204 17 213 4.84e-40 136
Msa0469370 MtrunA17_Chr4g0046261 36.306 157 100 0 10 166 14 170 8.54e-40 135
Msa0469370 MtrunA17_Chr2g0315551 35.669 157 101 0 10 166 14 170 1.18e-39 135
Msa0469370 MtrunA17_Chr1g0212521 36.364 198 122 3 11 204 17 214 1.37e-39 135
Msa0469370 MtrunA17_Chr1g0182321 42.405 158 90 1 11 167 17 174 3.00e-39 134
Msa0469370 MtrunA17_Chr2g0327911 37.056 197 120 3 11 204 17 212 3.25e-39 134
Msa0469370 MtrunA17_Chr1g0182301 42.405 158 90 1 11 167 17 174 4.82e-39 133
Msa0469370 MtrunA17_Chr4g0040781 36.306 157 100 0 10 166 14 170 4.85e-39 133
Msa0469370 MtrunA17_Chr7g0263071 42.405 158 90 1 11 167 17 174 5.09e-39 133
Msa0469370 MtrunA17_Chr2g0283131 36.306 157 100 0 10 166 14 170 8.49e-39 132
Msa0469370 MtrunA17_Chr2g0319951 34.783 161 105 0 10 170 14 174 1.88e-38 132
Msa0469370 MtrunA17_Chr2g0325091 33.663 202 128 2 10 205 12 213 2.44e-38 131
Msa0469370 MtrunA17_Chr4g0004661 39.216 204 110 5 11 206 66 263 2.82e-38 132
Msa0469370 MtrunA17_Chr4g0034871 38.235 204 111 4 11 206 10 206 4.48e-38 130
Msa0469370 MtrunA17_Chr2g0331691 36.946 203 116 3 11 206 12 209 1.79e-37 129
Msa0469370 MtrunA17_Chr8g0383261 33.498 203 121 4 11 206 14 209 5.45e-36 125
Msa0469370 MtrunA17_Chr1g0197331 37.186 199 120 4 10 205 16 212 1.64e-35 124
Msa0469370 MtrunA17_Chr8g0384311 41.509 159 90 3 10 166 14 171 2.02e-35 124
Msa0469370 MtrunA17_Chr1g0201121 34.975 203 120 4 11 206 10 207 2.31e-35 124
Msa0469370 MtrunA17_Chr6g0466301 35.294 204 117 5 11 206 10 206 2.61e-35 123
Msa0469370 MtrunA17_Chr6g0465491 35.294 204 117 5 11 206 10 206 2.61e-35 123
Msa0469370 MtrunA17_Chr1g0180291 36.041 197 123 3 10 204 15 210 2.89e-35 123
Msa0469370 MtrunA17_Chr8g0392931 37.267 161 101 0 10 170 15 175 3.58e-35 123
Msa0469370 MtrunA17_Chr7g0265001 33.333 198 130 2 10 205 17 214 7.68e-34 120
Msa0469370 MtrunA17_Chr3g0130271 39.412 170 99 4 10 176 13 181 1.65e-32 116
Msa0469370 MtrunA17_Chr1g0159481 37.278 169 103 3 10 176 18 185 5.22e-32 115
Msa0469370 MtrunA17_Chr3g0138121 32.143 168 111 3 10 177 14 178 1.02e-24 96.7
Msa0469370 MtrunA17_Chr3g0138111 32.143 168 111 3 10 177 14 178 1.04e-24 96.7
Msa0469370 MtrunA17_Chr3g0138101 32.143 168 111 3 10 177 14 178 1.05e-24 96.7
Msa0469370 MtrunA17_Chr3g0117931 35.758 165 92 5 11 163 10 172 6.69e-22 89.0
Msa0469370 MtrunA17_Chr2g0325101 35.152 165 93 5 11 163 8 170 1.35e-21 87.8
Msa0469370 MtrunA17_Chr6g0486041 34.545 165 94 5 11 163 8 170 3.62e-20 84.3
Msa0469370 MtrunA17_Chr6g0466161 28.191 188 121 5 26 206 7 187 9.60e-20 83.2
Msa0469370 MtrunA17_Chr4g0046211 36.154 130 80 3 11 139 8 135 2.45e-19 80.5
Msa0469370 MtrunA17_Chr8g0371501 30.909 165 100 4 11 163 8 170 4.51e-19 81.3
Msa0469370 MtrunA17_Chr6g0465471 27.660 188 122 5 26 206 7 187 4.76e-19 81.3
Msa0469370 MtrunA17_Chr5g0405791 30.909 165 100 4 11 163 8 170 5.34e-19 80.9
Msa0469370 MtrunA17_Chr4g0037021 31.515 165 99 5 11 163 8 170 1.09e-18 80.1
Msa0469370 MtrunA17_Chr6g0466431 38.542 96 50 1 11 106 10 96 4.95e-18 75.9
Msa0469370 MtrunA17_Chr6g0465611 38.542 96 50 1 11 106 10 96 4.95e-18 75.9
Msa0469370 MtrunA17_Chr5g0443631 25.146 171 122 3 5 170 100 269 1.30e-13 67.8
Msa0469370 MtrunA17_Chr1g0178291 32.051 156 97 4 12 166 431 578 4.42e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469370 AT5G10260.1 88.406 207 23 1 1 206 1 207 1.09e-136 381
Msa0469370 AT2G22290.1 88.889 207 22 1 1 206 1 207 1.89e-135 378
Msa0469370 AT2G44610.1 86.058 208 27 2 1 206 1 208 4.13e-131 367
Msa0469370 AT4G39890.1 78.972 214 37 3 1 206 1 214 2.58e-117 332
Msa0469370 AT5G64990.1 78.392 199 41 2 10 206 8 206 3.23e-108 309
Msa0469370 AT5G64990.2 75.728 206 41 3 10 206 8 213 2.37e-105 302
Msa0469370 AT4G19640.1 44.720 161 89 0 11 171 12 172 1.12e-50 163
Msa0469370 AT3G54840.1 47.561 164 85 1 9 171 33 196 1.43e-50 162
Msa0469370 AT5G45130.1 44.720 161 89 0 11 171 12 172 1.45e-50 162
Msa0469370 AT3G54840.3 47.826 161 83 1 12 171 2 162 5.73e-50 160
Msa0469370 AT5G45130.2 44.025 159 89 0 13 171 22 180 1.18e-48 158
Msa0469370 AT3G54840.2 48.077 156 80 1 9 163 33 188 1.90e-48 157
Msa0469370 AT1G09630.1 40.252 159 95 0 10 168 13 171 9.24e-44 145
Msa0469370 AT3G11730.1 38.889 198 114 2 10 204 9 202 1.23e-43 145
Msa0469370 AT5G65270.1 38.217 157 97 0 10 166 18 174 1.41e-43 145
Msa0469370 AT1G07410.1 39.752 161 97 0 10 170 13 173 1.61e-43 145
Msa0469370 AT4G17160.1 38.272 162 100 0 9 170 6 167 2.54e-43 144
Msa0469370 AT1G05810.1 37.255 204 119 3 10 206 13 214 2.54e-43 145
Msa0469370 AT4G35860.1 34.615 208 118 3 10 204 7 209 3.40e-43 144
Msa0469370 AT1G05810.2 37.255 204 119 3 10 206 59 260 6.75e-43 145
Msa0469370 AT4G39990.1 36.646 161 102 0 10 170 18 178 1.28e-42 143
Msa0469370 AT4G17170.1 37.267 161 101 0 10 170 7 167 1.65e-42 142
Msa0469370 AT3G12160.1 36.946 203 120 3 10 204 16 218 1.85e-42 142
Msa0469370 AT5G59150.1 39.490 157 95 0 10 166 13 169 2.04e-42 142
Msa0469370 AT2G31680.1 35.122 205 123 3 10 206 13 215 4.25e-42 142
Msa0469370 AT3G46830.1 38.854 157 96 0 10 166 13 169 4.78e-42 141
Msa0469370 AT3G46830.2 38.854 157 96 0 10 166 13 169 4.78e-42 141
Msa0469370 AT3G07410.1 42.208 154 89 0 10 163 13 166 8.04e-42 141
Msa0469370 AT5G47960.1 34.804 204 124 2 10 204 16 219 1.45e-41 140
Msa0469370 AT1G18200.1 40.909 154 91 0 10 163 14 167 2.09e-41 140
Msa0469370 AT1G02130.1 40.994 161 95 0 10 170 9 169 3.56e-41 139
Msa0469370 AT5G47520.1 38.217 157 97 0 10 166 15 171 8.39e-41 138
Msa0469370 AT2G43130.1 38.217 157 97 0 10 166 13 169 1.05e-40 138
Msa0469370 AT3G15060.1 36.646 161 102 0 10 170 14 174 2.24e-40 137
Msa0469370 AT4G17530.1 40.373 161 96 0 10 170 9 169 4.03e-40 136
Msa0469370 AT5G47200.1 40.373 161 96 0 10 170 9 169 4.49e-40 136
Msa0469370 AT4G18430.1 33.010 206 125 3 10 205 14 216 1.10e-39 135
Msa0469370 AT5G60860.1 36.025 161 103 0 10 170 14 174 1.13e-39 135
Msa0469370 AT3G18820.1 38.725 204 110 4 11 206 10 206 1.17e-39 135
Msa0469370 AT1G73640.1 38.961 154 94 0 10 163 14 167 1.74e-39 135
Msa0469370 AT4G19640.2 45.238 126 69 0 11 136 12 137 3.56e-39 132
Msa0469370 AT1G28550.1 37.580 157 98 0 10 166 14 170 5.91e-39 134
Msa0469370 AT5G59840.1 37.056 197 111 3 11 203 17 204 7.74e-39 133
Msa0469370 AT1G16920.1 35.032 157 102 0 10 166 14 170 8.71e-39 133
Msa0469370 AT3G46060.2 41.772 158 91 1 11 167 17 174 2.38e-38 132
Msa0469370 AT3G46060.3 41.772 158 91 1 11 167 17 174 2.38e-38 132
Msa0469370 AT3G46060.1 41.772 158 91 1 11 167 17 174 2.38e-38 132
Msa0469370 AT1G06400.1 36.306 157 100 0 10 166 14 170 2.85e-38 132
Msa0469370 AT1G01200.1 36.190 210 120 5 10 206 29 237 2.87e-38 132
Msa0469370 AT4G19640.3 45.600 125 68 0 11 135 12 136 4.86e-38 130
Msa0469370 AT1G52280.1 38.235 204 111 4 11 206 10 206 6.19e-38 130
Msa0469370 AT3G53610.2 41.772 158 91 1 11 167 17 174 7.05e-38 130
Msa0469370 AT3G53610.3 41.772 158 91 1 11 167 17 174 7.05e-38 130
Msa0469370 AT3G53610.1 41.772 158 91 1 11 167 17 174 7.05e-38 130
Msa0469370 AT5G03520.1 38.889 198 118 3 11 205 17 214 1.03e-37 130
Msa0469370 AT3G16100.1 38.725 204 110 4 11 206 10 206 3.75e-37 129
Msa0469370 AT5G45750.1 35.220 159 99 2 10 166 14 170 3.75e-37 129
Msa0469370 AT2G33870.1 36.306 157 100 0 10 166 14 170 7.30e-37 128
Msa0469370 AT2G21880.1 35.714 210 113 5 11 206 11 212 2.34e-36 127
Msa0469370 AT4G18800.1 34.591 159 100 2 10 166 14 170 5.96e-36 125
Msa0469370 AT1G49300.2 36.275 204 115 4 11 206 10 206 2.27e-35 124
Msa0469370 AT1G49300.1 36.275 204 115 4 11 206 10 206 2.27e-35 124
Msa0469370 AT3G09900.1 43.038 158 89 1 11 167 17 174 4.74e-35 123
Msa0469370 AT4G09720.1 36.275 204 115 7 11 206 10 206 1.15e-34 122
Msa0469370 AT1G22740.1 35.468 203 115 5 11 206 10 203 2.92e-34 121
Msa0469370 AT5G03530.2 34.848 198 126 3 10 205 14 210 8.77e-34 120
Msa0469370 AT5G03530.1 34.848 198 126 3 10 205 14 210 8.77e-34 120
Msa0469370 AT4G09720.4 35.407 209 115 7 11 206 10 211 2.72e-33 119
Msa0469370 AT1G43890.3 37.791 172 104 3 10 179 14 184 3.04e-33 119
Msa0469370 AT1G43890.1 37.791 172 104 3 10 179 14 184 3.04e-33 119
Msa0469370 AT1G43890.2 37.791 172 104 3 10 179 14 184 3.04e-33 119
Msa0469370 AT4G09720.3 34.419 215 115 7 11 206 10 217 1.20e-32 117
Msa0469370 AT4G35860.2 36.364 165 87 3 53 204 4 163 1.61e-32 115
Msa0469370 AT5G39620.1 35.922 206 118 6 9 206 5 204 4.12e-32 115
Msa0469370 AT5G03520.2 37.576 165 100 3 44 205 40 204 4.63e-30 110
Msa0469370 AT3G09910.3 36.869 198 116 5 10 205 14 204 6.64e-30 110
Msa0469370 AT3G09910.1 36.869 198 116 5 10 205 14 204 6.64e-30 110
Msa0469370 AT3G09910.2 36.869 198 116 5 10 205 14 204 6.64e-30 110
Msa0469370 AT2G21880.4 33.846 195 107 5 26 206 1 187 2.07e-29 108
Msa0469370 AT2G21880.3 33.846 195 107 5 26 206 1 187 2.07e-29 108
Msa0469370 AT3G09910.5 38.750 160 95 3 10 167 14 172 3.54e-29 107
Msa0469370 AT3G09910.4 38.750 160 95 3 10 167 14 172 3.54e-29 107
Msa0469370 AT5G59150.2 39.474 114 69 0 53 166 5 118 6.81e-28 103
Msa0469370 AT2G21880.2 32.381 210 112 6 11 206 11 204 6.22e-27 102
Msa0469370 AT4G09720.6 35.593 177 99 7 38 206 3 172 1.85e-25 97.8
Msa0469370 AT4G09720.5 35.593 177 99 7 38 206 3 172 1.85e-25 97.8
Msa0469370 AT4G09720.2 35.593 177 99 7 38 206 3 172 1.85e-25 97.8
Msa0469370 AT5G55080.1 30.409 171 116 3 7 177 11 178 2.09e-25 99.0
Msa0469370 AT5G20020.1 32.143 168 111 3 10 177 14 178 5.72e-25 97.8
Msa0469370 AT5G20010.1 32.143 168 111 3 10 177 14 178 7.86e-25 97.4
Msa0469370 AT5G55190.1 32.143 168 111 3 10 177 14 178 1.72e-24 96.3
Msa0469370 AT2G44690.1 35.152 165 93 5 11 163 20 182 9.66e-23 91.7
Msa0469370 AT3G48040.1 35.758 165 92 5 11 163 10 172 4.52e-21 87.0
Msa0469370 AT4G35020.1 33.333 165 96 5 11 163 8 170 1.68e-20 85.5
Msa0469370 AT4G35020.2 33.333 165 96 5 11 163 8 170 1.68e-20 85.5
Msa0469370 AT4G35020.3 33.333 165 96 5 11 163 8 170 1.68e-20 85.5
Msa0469370 AT1G20090.1 32.727 165 97 4 11 163 7 169 6.67e-20 83.6
Msa0469370 AT1G75840.1 32.727 165 97 4 11 163 8 170 7.18e-20 83.6
Msa0469370 AT5G62880.1 34.545 165 94 5 11 163 10 172 7.47e-20 84.0
Msa0469370 AT3G51300.1 32.121 165 98 4 11 163 8 170 2.03e-19 82.4
Msa0469370 AT4G35950.1 32.727 165 97 4 11 163 8 170 2.05e-19 82.4
Msa0469370 AT2G17800.2 32.727 165 97 4 11 163 8 170 2.67e-19 82.0
Msa0469370 AT2G17800.1 32.727 165 97 4 11 163 8 170 2.67e-19 82.0
Msa0469370 AT3G48040.2 35.897 156 86 5 11 154 10 163 3.59e-19 81.3
Msa0469370 AT4G28950.1 32.515 163 98 5 11 163 8 168 1.79e-18 80.1
Msa0469370 AT5G62880.2 38.525 122 72 3 11 131 10 129 3.70e-18 79.0
Msa0469370 AT5G45970.1 30.909 165 100 5 11 163 8 170 4.12e-18 79.3
Msa0469370 AT4G35020.4 35.965 114 70 3 11 123 8 119 2.06e-15 70.5
Msa0469370 AT4G35020.5 35.965 114 70 3 11 123 8 119 2.06e-15 70.5
Msa0469370 AT5G46025.1 36.782 87 54 1 85 170 20 106 4.15e-15 68.9
Msa0469370 AT3G51290.2 31.818 132 77 4 44 163 641 771 2.46e-11 62.8

Find 55 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTCACTTGACACAATTAT+TGG 0.192149 3_3:-71179123 Msa0469370:three_prime_UTR
TATTGGCTTGGCAACTAAAA+TGG 0.194288 3_3:-71179106 Msa0469370:three_prime_UTR
TAAGAAAACGAGTTTGTATT+TGG 0.198916 3_3:+71183295 None:intergenic
GAACGTGAATAACGCGAATC+TGG 0.310056 3_3:+71183375 None:intergenic
CAGTGATGTTATTATCGTTT+TGG 0.337333 3_3:-71180444 Msa0469370:CDS
TCCACCTTGCTGCTCTGTCC+TGG 0.375622 3_3:+71179190 None:intergenic
CATTGGTACAAAAGTACGTT+TGG 0.379590 3_3:+71179062 None:intergenic
GAAGCAATCTTGCGAAATAA+AGG 0.385222 3_3:+71179293 None:intergenic
CAATGCTCTTCAGTTTAGTT+TGG 0.388867 3_3:-71179044 Msa0469370:three_prime_UTR
AAGATTGCTTCAGCCTTGCC+CGG 0.405262 3_3:-71179281 Msa0469370:CDS
TACAAAAGTACGTTTGGGTT+TGG 0.416717 3_3:+71179068 None:intergenic
GAACAGTTCGTTTGCAGCTC+TGG 0.419041 3_3:-71182255 Msa0469370:intron
TAAATTCGACACTACCTATC+AGG 0.424038 3_3:-71183222 Msa0469370:intron
CTCTGTCCTGGATGAATTCA+CGG 0.424353 3_3:+71179202 None:intergenic
TAGTGTTAAGAAATGATTGC+CGG 0.427909 3_3:+71180501 None:intergenic
AGTACGTTTGGGTTTGGCCT+AGG 0.430088 3_3:+71179074 None:intergenic
AACGAACTGTTCGATCTTCA+AGG 0.432629 3_3:+71182266 None:intergenic
TCTACATTTCAGGCGACAAT+TGG 0.437446 3_3:-71182316 Msa0469370:intron
ACTTGACACAATTATTGGCT+TGG 0.447901 3_3:-71179118 Msa0469370:three_prime_UTR
GAAAAGTGGAATAACCTGAT+AGG 0.460045 3_3:+71183208 None:intergenic
GCTCTTCAGTTTAGTTTGGT+AGG 0.461266 3_3:-71179040 Msa0469370:three_prime_UTR
TGCTTCAGCCTTGCCCGGGA+TGG 0.464859 3_3:-71179276 Msa0469370:CDS
ATGCCAAGTCGCGTGAGAGC+GGG 0.477457 3_3:-71179643 Msa0469370:CDS
AACGTGAATAACGCGAATCT+GGG 0.495484 3_3:+71183376 None:intergenic
ATTGGTACAAAAGTACGTTT+GGG 0.496039 3_3:+71179063 None:intergenic
TTCTTAGGTGATCAATCCGT+TGG 0.500123 3_3:-71183278 Msa0469370:CDS
GAAGAATCTCTTATATAACT+TGG 0.525048 3_3:+71182093 None:intergenic
TAACACTAACAAGTGGGTTG+AGG 0.526084 3_3:-71180486 Msa0469370:CDS
AGGACAGAGCAGCAAGGTGG+AGG 0.526096 3_3:-71179188 Msa0469370:CDS
AGATTGCTTCAGCCTTGCCC+GGG 0.531466 3_3:-71179280 Msa0469370:CDS
ATAGAAACCAGTGCAAAAGC+AGG 0.533135 3_3:-71179611 Msa0469370:CDS
GTTGAAAGACTTTCCATCCC+GGG 0.541408 3_3:+71179263 None:intergenic
TAACTCCACAGGGATACTGC+AGG 0.545708 3_3:-71182141 Msa0469370:intron
TAATAGGCAAGTCTCTATAG+AGG 0.546908 3_3:-71179672 Msa0469370:intron
AAGACTTTCCATCCCGGGCA+AGG 0.551250 3_3:+71179268 None:intergenic
GATCCCGCTCTCACGCGACT+TGG 0.552486 3_3:+71179640 None:intergenic
CACTAACAAGTGGGTTGAGG+AGG 0.555833 3_3:-71180483 Msa0469370:CDS
ACGAGTTTGTATTTGGCTAG+AGG 0.566889 3_3:+71183302 None:intergenic
TGTTGAAAGACTTTCCATCC+CGG 0.567013 3_3:+71179262 None:intergenic
CAAACTAAACTGAAGAGCAT+TGG 0.570927 3_3:+71179045 None:intergenic
AAAAGCAGGATTTAATATCA+AGG 0.572165 3_3:-71179597 Msa0469370:intron
ATTTCTTAACACTAACAAGT+GGG 0.572336 3_3:-71180492 Msa0469370:CDS
TTCAACAAAGCAAGAAGACA+TGG 0.574137 3_3:-71179246 Msa0469370:CDS
AATCTACCGTGAATTCATCC+AGG 0.579097 3_3:-71179208 Msa0469370:CDS
CATTTCTTAACACTAACAAG+TGG 0.582798 3_3:-71180493 Msa0469370:CDS
AGGCAAGTCTCTATAGAGGA+AGG 0.591101 3_3:-71179668 Msa0469370:CDS
GATGCCAAGTCGCGTGAGAG+CGG 0.614649 3_3:-71179644 Msa0469370:CDS
AACTCCACAGGGATACTGCA+GGG 0.615234 3_3:-71182140 Msa0469370:intron
TAAAATGGAAATATGCACCT+AGG 0.622590 3_3:-71179091 Msa0469370:three_prime_UTR
TATAAGAGATTCTTCAGTCG+CGG 0.624663 3_3:-71182085 Msa0469370:CDS
TCCAGGACAGAGCAGCAAGG+TGG 0.660114 3_3:-71179191 Msa0469370:CDS
CATGAAGCGAGTGATGATGC+TGG 0.674864 3_3:+71183250 None:intergenic
GAGGAGGTACGTGCAGAACG+AGG 0.683803 3_3:-71180467 Msa0469370:CDS
TCATCCAGGACAGAGCAGCA+AGG 0.690459 3_3:-71179194 Msa0469370:CDS
AAACAGTGCTATTCACAACA+AGG 0.704518 3_3:-71179154 Msa0469370:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAGAAACAAAAA+TGG - chr3_3:71179073-71179092 Msa0469370:three_prime_UTR 10.0%
!! TAATTATTATACATTCTTTA+AGG - chr3_3:71181665-71181684 Msa0469370:intron 10.0%
!! AGAAATTGAAAAAAATGAAA+CGG + chr3_3:71179270-71179289 None:intergenic 15.0%
!! ATTCAAAATATGCAAAAAAT+GGG + chr3_3:71180237-71180256 None:intergenic 15.0%
!!! TAATTTTTTTTCAATCTATG+AGG - chr3_3:71181833-71181852 Msa0469370:intron 15.0%
!! AATAAGTTAGAAATGAAAAG+TGG + chr3_3:71179218-71179237 None:intergenic 20.0%
!! CAATAAAACATTCACTAAAT+AGG + chr3_3:71179435-71179454 None:intergenic 20.0%
!! TTTATTGTGTATTAAGAACA+AGG - chr3_3:71179448-71179467 Msa0469370:intron 20.0%
!!! AATTGTAGGAATTATTTTCA+AGG - chr3_3:71179809-71179828 Msa0469370:intron 20.0%
!!! ATTGTAGGAATTATTTTCAA+GGG - chr3_3:71179810-71179829 Msa0469370:intron 20.0%
!! CATTCAAAATATGCAAAAAA+TGG + chr3_3:71180238-71180257 None:intergenic 20.0%
!! CAAAAAAAGTTAATACTTAC+TGG + chr3_3:71180368-71180387 None:intergenic 20.0%
!! TTTAACGTTAGCAAATAATT+TGG + chr3_3:71180531-71180550 None:intergenic 20.0%
!!! TCATGAACTTATTTTAACTT+TGG + chr3_3:71180882-71180901 None:intergenic 20.0%
!!! CATTGTAATTTGTAAGTTTA+TGG + chr3_3:71181247-71181266 None:intergenic 20.0%
!! TTACAAATTACAATGTTGTA+TGG - chr3_3:71181252-71181271 Msa0469370:intron 20.0%
!! TACAAATTACAATGTTGTAT+GGG - chr3_3:71181253-71181272 Msa0469370:intron 20.0%
!!! TGTTTCGTTTTCAAAAAAAT+TGG - chr3_3:71182178-71182197 Msa0469370:intron 20.0%
!! GTTCTGTTTGAATATTATAA+TGG - chr3_3:71182224-71182243 Msa0469370:intron 20.0%
!! TGTTTGAATATTATAATGGT+AGG - chr3_3:71182228-71182247 Msa0469370:intron 20.0%
!! TATTTCAAAACCATATTTAG+AGG - chr3_3:71182402-71182421 Msa0469370:intron 20.0%
!! TATGAATTTACCTCTAAATA+TGG + chr3_3:71182415-71182434 None:intergenic 20.0%
!! ATATTTAGAGGTAAATTCAT+AGG - chr3_3:71182414-71182433 Msa0469370:intron 20.0%
!! GAAAAAAACAAAATATGATG+AGG + chr3_3:71182633-71182652 None:intergenic 20.0%
!!! ATTTTGTTTTTTTCCTCATA+TGG - chr3_3:71182639-71182658 Msa0469370:intron 20.0%
! TAAGAAAACGAGTTTGTATT+TGG + chr3_3:71179117-71179136 None:intergenic 25.0%
!! AAATACAAACTCGTTTTCTT+AGG - chr3_3:71179116-71179135 Msa0469370:three_prime_UTR 25.0%
!! ATTTTATTCTGCATTGTCTT+TGG - chr3_3:71179615-71179634 Msa0469370:CDS 25.0%
! TAAGCAAAATTGTTTCGATT+AGG - chr3_3:71179678-71179697 Msa0469370:intron 25.0%
!!! TTGTAGGAATTATTTTCAAG+GGG - chr3_3:71179811-71179830 Msa0469370:intron 25.0%
! GAAGAATCTCTTATATAACT+TGG + chr3_3:71180319-71180338 None:intergenic 25.0%
! CAAAAAAAGTTAATACTGAC+TGG + chr3_3:71180434-71180453 None:intergenic 25.0%
! AAGAAAACAATACAATAGCA+TGG - chr3_3:71180461-71180480 Msa0469370:CDS 25.0%
! GAATTAACAAAGTTAACTCT+TGG + chr3_3:71180717-71180736 None:intergenic 25.0%
! AGAGTTAACTTTGTTAATTC+TGG - chr3_3:71180717-71180736 Msa0469370:intron 25.0%
!!! GTCTTACATTAAAAGTACTT+CGG - chr3_3:71180971-71180990 Msa0469370:intron 25.0%
! AAACTAAATGACCGATATAT+AGG - chr3_3:71181110-71181129 Msa0469370:intron 25.0%
!! AAGCTTAAACGAAGATTTTA+CGG - chr3_3:71181216-71181235 Msa0469370:intron 25.0%
! AGGAACAAAAATACATTTCT+TGG - chr3_3:71181372-71181391 Msa0469370:intron 25.0%
! TGATATCATAATTTCTGTCA+TGG + chr3_3:71181537-71181556 None:intergenic 25.0%
! ATTATGATATCATACGATCT+AGG - chr3_3:71181545-71181564 Msa0469370:intron 25.0%
! ATTTCTTAACACTAACAAGT+GGG - chr3_3:71181917-71181936 Msa0469370:intron 25.0%
! AAACTGATCTTGTTGAAAAA+AGG - chr3_3:71181997-71182016 Msa0469370:intron 25.0%
! GAATTATAGCAAACATAGTA+TGG + chr3_3:71182157-71182176 None:intergenic 25.0%
! GTAATACTAAAAATTCGTAC+AGG - chr3_3:71182349-71182368 Msa0469370:intron 25.0%
! GAAATAACAACTTCAAAGTA+TGG + chr3_3:71182388-71182407 None:intergenic 25.0%
! TATATCCAACAATATCATCA+TGG + chr3_3:71182441-71182460 None:intergenic 25.0%
! ATTGTTGGATATAATGTTTC+CGG - chr3_3:71182448-71182467 Msa0469370:intron 25.0%
! TTGCTATAAGAAGAATTGTA+TGG + chr3_3:71182672-71182691 None:intergenic 25.0%
! AAGCATCATAATGTCATTAT+AGG + chr3_3:71182717-71182736 None:intergenic 25.0%
! TGACATTATGATGCTTTAAT+AGG - chr3_3:71182721-71182740 Msa0469370:intron 25.0%
! AAAAGCAGGATTTAATATCA+AGG - chr3_3:71182812-71182831 Msa0469370:intron 25.0%
! TACATCATACATGAACATAT+GGG + chr3_3:71182865-71182884 None:intergenic 25.0%
! ATACATCATACATGAACATA+TGG + chr3_3:71182866-71182885 None:intergenic 25.0%
TTGTGTATTAAGAACAAGGA+TGG - chr3_3:71179452-71179471 Msa0469370:intron 30.0%
! ATTATTTTCCTGTTGCGTAT+AGG - chr3_3:71179502-71179521 Msa0469370:intron 30.0%
! CGTGTTTAAAATACGTGATT+AGG - chr3_3:71179561-71179580 Msa0469370:intron 30.0%
TTAGGACTTGATTAGGAATT+AGG - chr3_3:71179579-71179598 Msa0469370:intron 30.0%
ATGCAGAATAAAATATCCTC+TGG + chr3_3:71179609-71179628 None:intergenic 30.0%
! TTTGGAGTATTTATGAACAG+AGG - chr3_3:71179633-71179652 Msa0469370:CDS 30.0%
! TTGGAGTATTTATGAACAGA+GGG - chr3_3:71179634-71179653 Msa0469370:CDS 30.0%
AGGGAATAGATCTAAATTCA+AGG - chr3_3:71179653-71179672 Msa0469370:CDS 30.0%
! GAGCTTTTATTAGCAATTGT+AGG - chr3_3:71179795-71179814 Msa0469370:intron 30.0%
TATTACCAACTTATCATGCA+AGG - chr3_3:71179962-71179981 Msa0469370:intron 30.0%
TTTGTAATCGTCTACATTTC+AGG - chr3_3:71180083-71180102 Msa0469370:intron 30.0%
TTGTAGTAGATTTCACATTG+TGG - chr3_3:71180195-71180214 Msa0469370:intron 30.0%
!!! TAGTCTATTTTAACTCCACA+GGG - chr3_3:71180258-71180277 Msa0469370:intron 30.0%
TTTGTTCTTAAGAGATTCTC+CGG - chr3_3:71180384-71180403 Msa0469370:intron 30.0%
CATAACTAAAAACCATATGC+TGG + chr3_3:71180604-71180623 None:intergenic 30.0%
!!! CAGCATATGGTTTTTAGTTA+TGG - chr3_3:71180602-71180621 Msa0469370:intron 30.0%
!!! TCTTTGTTTTTCTCTCAACT+TGG + chr3_3:71180632-71180651 None:intergenic 30.0%
! ATTGTGTTCTTCTTTTTGTG+TGG - chr3_3:71180774-71180793 Msa0469370:intron 30.0%
! AAAGTAATGGAAGTTTGTGA+TGG - chr3_3:71180828-71180847 Msa0469370:intron 30.0%
!! TTAGCTTTAGAGGTGAAAAT+TGG - chr3_3:71180929-71180948 Msa0469370:intron 30.0%
!! ATATCGGTCATTTAGTTTGA+TGG + chr3_3:71181108-71181127 None:intergenic 30.0%
AAGTGGTAGTTTATATCACA+GGG + chr3_3:71181196-71181215 None:intergenic 30.0%
TAAGTGGTAGTTTATATCAC+AGG + chr3_3:71181197-71181216 None:intergenic 30.0%
AATCTTCGTTTAAGCTTAAG+TGG + chr3_3:71181213-71181232 None:intergenic 30.0%
AAGAATGTTACAACGATAAG+TGG - chr3_3:71181332-71181351 Msa0469370:intron 30.0%
TGGTTTACACAAGATAAGAT+AGG - chr3_3:71181352-71181371 Msa0469370:intron 30.0%
CTATACTCCATTTAGTCAAT+CGG + chr3_3:71181430-71181449 None:intergenic 30.0%
GGCGAGTTAAGAAAAATTAT+AGG - chr3_3:71181461-71181480 Msa0469370:intron 30.0%
CTCTAAATCTCTCATTAGTT+TGG + chr3_3:71181487-71181506 None:intergenic 30.0%
CACTGAATAATTGAAAACGT+CGG - chr3_3:71181731-71181750 Msa0469370:intron 30.0%
AATAGAAAACACACACAAAG+AGG + chr3_3:71181771-71181790 None:intergenic 30.0%
!! CAGCTTGCTAAGAAATTTAA+TGG + chr3_3:71181876-71181895 None:intergenic 30.0%
TAGTGTTAAGAAATGATTGC+CGG + chr3_3:71181911-71181930 None:intergenic 30.0%
CATTTCTTAACACTAACAAG+TGG - chr3_3:71181916-71181935 Msa0469370:intron 30.0%
! CAGTGATGTTATTATCGTTT+TGG - chr3_3:71181965-71181984 Msa0469370:intron 30.0%
!! GATGTTATTATCGTTTTGGT+TGG - chr3_3:71181969-71181988 Msa0469370:intron 30.0%
TTATTGCCTAACAACTGAAT+TGG - chr3_3:71182266-71182285 Msa0469370:CDS 30.0%
ACTTAACCAATTCAGTTGTT+AGG + chr3_3:71182275-71182294 None:intergenic 30.0%
! ACTTCAAAGTATGGCAATTT+TGG + chr3_3:71182379-71182398 None:intergenic 30.0%
ACATCATACATGAACATATG+GGG + chr3_3:71182864-71182883 None:intergenic 30.0%
TGTTCACTTGACACAATTAT+TGG - chr3_3:71183286-71183305 Msa0469370:CDS 30.0%
TAAAATGGAAATATGCACCT+AGG - chr3_3:71183318-71183337 Msa0469370:CDS 30.0%
! ATTGGTACAAAAGTACGTTT+GGG + chr3_3:71183349-71183368 None:intergenic 30.0%
TAAATTCGACACTACCTATC+AGG - chr3_3:71179187-71179206 Msa0469370:CDS 35.0%
GAAAAGTGGAATAACCTGAT+AGG + chr3_3:71179204-71179223 None:intergenic 35.0%
! GATATTTGTGTGATTTTGCG+AGG - chr3_3:71179354-71179373 Msa0469370:intron 35.0%
TACGTGATTAGGACTTGATT+AGG - chr3_3:71179572-71179591 Msa0469370:intron 35.0%
CACAAACAAGATACGAGTAT+TGG - chr3_3:71179872-71179891 Msa0469370:intron 35.0%
! GATAAGTATCGTAACTGATG+CGG - chr3_3:71179894-71179913 Msa0469370:intron 35.0%
AGTAACCTTGCATGATAAGT+TGG + chr3_3:71179970-71179989 None:intergenic 35.0%
! TCTCCTTTGTCATGTTGTTT+CGG - chr3_3:71180005-71180024 Msa0469370:intron 35.0%
AAACCGAAACAACATGACAA+AGG + chr3_3:71180011-71180030 None:intergenic 35.0%
AAGATCCTAACAGTAGGAAA+GGG + chr3_3:71180056-71180075 None:intergenic 35.0%
TTTGTCAAGATCCTAACAGT+AGG + chr3_3:71180062-71180081 None:intergenic 35.0%
!!! GTAGTCTATTTTAACTCCAC+AGG - chr3_3:71180257-71180276 Msa0469370:intron 35.0%
TATAAGAGATTCTTCAGTCG+CGG - chr3_3:71180324-71180343 Msa0469370:intron 35.0%
TCATATACAATAACCGCAAC+CGG + chr3_3:71180406-71180425 None:intergenic 35.0%
ACTAAAAACCATATGCTGGA+TGG + chr3_3:71180600-71180619 None:intergenic 35.0%
AACACAATGACATTGTCTCT+TGG + chr3_3:71180762-71180781 None:intergenic 35.0%
GTGGATAATATAGTCCTAGT+TGG - chr3_3:71180793-71180812 Msa0469370:intron 35.0%
TGAAGTACAAGTTTAGCAAG+AGG - chr3_3:71180899-71180918 Msa0469370:intron 35.0%
ATAGAGAATAGAGAGAGACA+TGG + chr3_3:71181075-71181094 None:intergenic 35.0%
!! ATTTAGTTTGATGGAGCTGT+CGG + chr3_3:71181099-71181118 None:intergenic 35.0%
AGTTGGCATCTCCTATATAT+CGG + chr3_3:71181124-71181143 None:intergenic 35.0%
ATATAGGAGATGCCAACTAT+AGG - chr3_3:71181126-71181145 Msa0469370:intron 35.0%
!!! TCTATTTTTTCCACCCTACT+TGG + chr3_3:71181154-71181173 None:intergenic 35.0%
AAGTAGGGTGGAAAAAATAG+AGG - chr3_3:71181153-71181172 Msa0469370:intron 35.0%
AGCCAAAAAGAAAGATGTCT+CGG - chr3_3:71181297-71181316 Msa0469370:intron 35.0%
!! AAAAGCACCGATTGACTAAA+TGG - chr3_3:71181420-71181439 Msa0469370:intron 35.0%
ATGGAGTATAGTCCAACATA+AGG - chr3_3:71181439-71181458 Msa0469370:intron 35.0%
TGGAGTATAGTCCAACATAA+GGG - chr3_3:71181440-71181459 Msa0469370:intron 35.0%
CATGGATCAAGTGTTAAGAT+AGG + chr3_3:71181519-71181538 None:intergenic 35.0%
AACAGAAATAACAGCAAAGC+AGG + chr3_3:71181591-71181610 None:intergenic 35.0%
TTGTTGAAAAAAGGTGAGCA+GGG - chr3_3:71182006-71182025 Msa0469370:intron 35.0%
!! CAGTTGATAGGTAACTATCA+AGG + chr3_3:71182061-71182080 None:intergenic 35.0%
! CTTGATAGTTACCTATCAAC+TGG - chr3_3:71182059-71182078 Msa0469370:intron 35.0%
TAGGTCCATGATGATATTGT+TGG - chr3_3:71182433-71182452 Msa0469370:intron 35.0%
TAATAGGCAAGTCTCTATAG+AGG - chr3_3:71182737-71182756 Msa0469370:intron 35.0%
!! ATTAAATCCTGCTTTTGCAC+TGG + chr3_3:71182808-71182827 None:intergenic 35.0%
AGACAGACTTCAGAATTCAA+AGG + chr3_3:71182900-71182919 None:intergenic 35.0%
! ATCTAAAAGTATGCCATCCA+TGG - chr3_3:71182977-71182996 Msa0469370:intron 35.0%
! ACAAGTTTGAAATCCATGGA+TGG + chr3_3:71182993-71183012 None:intergenic 35.0%
! GACAACAAGTTTGAAATCCA+TGG + chr3_3:71182997-71183016 None:intergenic 35.0%
!! CTGCAACATTTTAATCACTC+GGG + chr3_3:71183096-71183115 None:intergenic 35.0%
!! GCTGCAACATTTTAATCACT+CGG + chr3_3:71183097-71183116 None:intergenic 35.0%
GAAGCAATCTTGCGAAATAA+AGG + chr3_3:71183119-71183138 None:intergenic 35.0%
TTCAACAAAGCAAGAAGACA+TGG - chr3_3:71183163-71183182 Msa0469370:intron 35.0%
! AAACAGTGCTATTCACAACA+AGG - chr3_3:71183255-71183274 Msa0469370:CDS 35.0%
! ACTTGACACAATTATTGGCT+TGG - chr3_3:71183291-71183310 Msa0469370:CDS 35.0%
!! TATTGGCTTGGCAACTAAAA+TGG - chr3_3:71183303-71183322 Msa0469370:CDS 35.0%
! TACAAAAGTACGTTTGGGTT+TGG + chr3_3:71183344-71183363 None:intergenic 35.0%
! CATTGGTACAAAAGTACGTT+TGG + chr3_3:71183350-71183369 None:intergenic 35.0%
! CAAACTAAACTGAAGAGCAT+TGG + chr3_3:71183367-71183386 None:intergenic 35.0%
CAATGCTCTTCAGTTTAGTT+TGG - chr3_3:71183365-71183384 Msa0469370:five_prime_UTR 35.0%
AACGTGAATAACGCGAATCT+GGG + chr3_3:71179036-71179055 None:intergenic 40.0%
ACGAGTTTGTATTTGGCTAG+AGG + chr3_3:71179110-71179129 None:intergenic 40.0%
TTCTTAGGTGATCAATCCGT+TGG - chr3_3:71179131-71179150 Msa0469370:three_prime_UTR 40.0%
!!! GATGATGCTGGTTTTACCAA+CGG + chr3_3:71179150-71179169 None:intergenic 40.0%
! TTGTGTGATTTTGCGAGGAT+CGG - chr3_3:71179359-71179378 Msa0469370:intron 40.0%
GGACTTGATTAGGAATTAGG+AGG - chr3_3:71179582-71179601 Msa0469370:intron 40.0%
AATGCACGAGTAAAGCAAGA+AGG + chr3_3:71179728-71179747 None:intergenic 40.0%
!! CGTTAAAGAAGTGCTAGAGT+AGG - chr3_3:71179767-71179786 Msa0469370:intron 40.0%
TTGTGCTTCGTCGACAAAAA+TGG + chr3_3:71179857-71179876 None:intergenic 40.0%
AGATCCTAACAGTAGGAAAG+GGG + chr3_3:71180055-71180074 None:intergenic 40.0%
CAAGATCCTAACAGTAGGAA+AGG + chr3_3:71180057-71180076 None:intergenic 40.0%
TCTACATTTCAGGCGACAAT+TGG - chr3_3:71180093-71180112 Msa0469370:intron 40.0%
AACGAACTGTTCGATCTTCA+AGG + chr3_3:71180146-71180165 None:intergenic 40.0%
AACTCTCTTCTGATAGGACA+TGG + chr3_3:71180574-71180593 None:intergenic 40.0%
TGGTCAAACTCTCTTCTGAT+AGG + chr3_3:71180580-71180599 None:intergenic 40.0%
ATATAGTCCTAGTTGGAGAC+TGG - chr3_3:71180800-71180819 Msa0469370:intron 40.0%
GAGACTGGAGAAGAAAGTAA+TGG - chr3_3:71180815-71180834 Msa0469370:intron 40.0%
! GTTTGTGATGGAGTCAGTAT+TGG - chr3_3:71180840-71180859 Msa0469370:intron 40.0%
GAATTGAGAGAGATCTGATG+AGG - chr3_3:71181046-71181065 Msa0469370:intron 40.0%
CCAACTATAGGATCCAAGTA+GGG - chr3_3:71181138-71181157 Msa0469370:intron 40.0%
! CACCGAGACATCTTTCTTTT+TGG + chr3_3:71181302-71181321 None:intergenic 40.0%
TTCTTAACTCGCCCTTATGT+TGG + chr3_3:71181454-71181473 None:intergenic 40.0%
ACACAAAGAGGTAGAGAACA+GGG + chr3_3:71181759-71181778 None:intergenic 40.0%
!! TAACACTAACAAGTGGGTTG+AGG - chr3_3:71181923-71181942 Msa0469370:intron 40.0%
CTTGTTGAAAAAAGGTGAGC+AGG - chr3_3:71182005-71182024 Msa0469370:intron 40.0%
AAAATGCTCAATGTCCTGAC+TGG + chr3_3:71182038-71182057 None:intergenic 40.0%
AAGTCAGCAAACCAGTTGAT+AGG + chr3_3:71182073-71182092 None:intergenic 40.0%
ACATCACATGCAAAGCTAAC+CGG + chr3_3:71182470-71182489 None:intergenic 40.0%
GTATGGATATGTGCCATATG+AGG + chr3_3:71182655-71182674 None:intergenic 40.0%
ATAGAAACCAGTGCAAAAGC+AGG - chr3_3:71182798-71182817 Msa0469370:intron 40.0%
ATGCAGCTGAGAATCATTCA+AGG + chr3_3:71182948-71182967 None:intergenic 40.0%
TGTTGAAAGACTTTCCATCC+CGG + chr3_3:71183150-71183169 None:intergenic 40.0%
AATCTACCGTGAATTCATCC+AGG - chr3_3:71183201-71183220 Msa0469370:intron 40.0%
!! GCTCTTCAGTTTAGTTTGGT+AGG - chr3_3:71183369-71183388 Msa0469370:five_prime_UTR 40.0%
GAACGTGAATAACGCGAATC+TGG + chr3_3:71179037-71179056 None:intergenic 45.0%
GCTTGTTTCCTATACGCAAC+AGG + chr3_3:71179513-71179532 None:intergenic 45.0%
TTAGGAATTAGGAGGACCAG+AGG - chr3_3:71179590-71179609 Msa0469370:intron 45.0%
TTTCCCCCTTTCCTACTGTT+AGG - chr3_3:71180048-71180067 Msa0469370:intron 45.0%
GATCCTAACAGTAGGAAAGG+GGG + chr3_3:71180054-71180073 None:intergenic 45.0%
CTTAAGAGATTCTCCGGTTG+CGG - chr3_3:71180390-71180409 Msa0469370:intron 45.0%
GAGTTTGACCATCCAGCATA+TGG - chr3_3:71180589-71180608 Msa0469370:intron 45.0%
TTCTTCTCCAGTCTCCAACT+AGG + chr3_3:71180810-71180829 None:intergenic 45.0%
!! AGGCACGAGTTTAGCTTTAG+AGG - chr3_3:71180919-71180938 Msa0469370:intron 45.0%
GCCAACTATAGGATCCAAGT+AGG - chr3_3:71181137-71181156 Msa0469370:intron 45.0%
CCCTACTTGGATCCTATAGT+TGG + chr3_3:71181141-71181160 None:intergenic 45.0%
ACTATAGGATCCAAGTAGGG+TGG - chr3_3:71181141-71181160 Msa0469370:intron 45.0%
TTCTTGGAAGATAGCACGTG+TGG - chr3_3:71181388-71181407 Msa0469370:intron 45.0%
AAAGCAGGCTTCCAATAGCT+GGG + chr3_3:71181576-71181595 None:intergenic 45.0%
CACACAAAGAGGTAGAGAAC+AGG + chr3_3:71181760-71181779 None:intergenic 45.0%
AGGCAAGTCTCTATAGAGGA+AGG - chr3_3:71182741-71182760 Msa0469370:intron 45.0%
CATGAACATATGGGGTGACT+CGG + chr3_3:71182856-71182875 None:intergenic 45.0%
GTTGAAAGACTTTCCATCCC+GGG + chr3_3:71183149-71183168 None:intergenic 45.0%
CTCTGTCCTGGATGAATTCA+CGG + chr3_3:71183210-71183229 None:intergenic 45.0%
! CATGAAGCGAGTGATGATGC+TGG + chr3_3:71179162-71179181 None:intergenic 50.0%
ACTGATGCGGCGATACGTTA+AGG - chr3_3:71179907-71179926 Msa0469370:intron 50.0%
GAACAGTTCGTTTGCAGCTC+TGG - chr3_3:71180154-71180173 Msa0469370:intron 50.0%
TAACTCCACAGGGATACTGC+AGG - chr3_3:71180268-71180287 Msa0469370:intron 50.0%
AACTCCACAGGGATACTGCA+GGG - chr3_3:71180269-71180288 Msa0469370:intron 50.0%
TCTAGGTACTCCCCAGCTAT+TGG - chr3_3:71181562-71181581 Msa0469370:intron 50.0%
AAGCAGGCTTCCAATAGCTG+GGG + chr3_3:71181575-71181594 None:intergenic 50.0%
CAAAGCAGGCTTCCAATAGC+TGG + chr3_3:71181577-71181596 None:intergenic 50.0%
CAAGCTGTTCTGATGCAGAC+CGG - chr3_3:71181889-71181908 Msa0469370:intron 50.0%
!! CACTAACAAGTGGGTTGAGG+AGG - chr3_3:71181926-71181945 Msa0469370:intron 50.0%
AAGATTGCTTCAGCCTTGCC+CGG - chr3_3:71183128-71183147 Msa0469370:intron 50.0%
! AGTACGTTTGGGTTTGGCCT+AGG + chr3_3:71183338-71183357 None:intergenic 50.0%
AGATTGCTTCAGCCTTGCCC+GGG - chr3_3:71183129-71183148 Msa0469370:intron 55.0%
AAGACTTTCCATCCCGGGCA+AGG + chr3_3:71183144-71183163 None:intergenic 55.0%
TCATCCAGGACAGAGCAGCA+AGG - chr3_3:71183215-71183234 Msa0469370:intron 55.0%
CTTGCCCTGCAGTATCCCTG+TGG + chr3_3:71180276-71180295 None:intergenic 60.0%
! GAGGAGGTACGTGCAGAACG+AGG - chr3_3:71181942-71181961 Msa0469370:intron 60.0%
GAGCAGGGAGTCAACCAGTC+AGG - chr3_3:71182021-71182040 Msa0469370:intron 60.0%
GATGCCAAGTCGCGTGAGAG+CGG - chr3_3:71182765-71182784 Msa0469370:intron 60.0%
ATGCCAAGTCGCGTGAGAGC+GGG - chr3_3:71182766-71182785 Msa0469370:intron 60.0%
TCCAGGACAGAGCAGCAAGG+TGG - chr3_3:71183218-71183237 Msa0469370:intron 60.0%
TCCACCTTGCTGCTCTGTCC+TGG + chr3_3:71183222-71183241 None:intergenic 60.0%
AGGACAGAGCAGCAAGGTGG+AGG - chr3_3:71183221-71183240 Msa0469370:intron 60.0%
GATCCCGCTCTCACGCGACT+TGG + chr3_3:71182772-71182791 None:intergenic 65.0%
TGCTTCAGCCTTGCCCGGGA+TGG - chr3_3:71183133-71183152 Msa0469370:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 71178981 71183450 71178981 ID=Msa0469370;Name=Msa0469370
chr3_3 mRNA 71178981 71183450 71178981 ID=Msa0469370-mRNA-1;Parent=Msa0469370;Name=Msa0469370-mRNA-1;_AED=0.08;_eAED=0.08;_QI=111|0.8|0.66|1|1|1|6|194|206
chr3_3 exon 71178981 71179315 71178981 ID=Msa0469370-mRNA-1:exon:17461;Parent=Msa0469370-mRNA-1
chr3_3 exon 71179598 71179688 71179598 ID=Msa0469370-mRNA-1:exon:17460;Parent=Msa0469370-mRNA-1
chr3_3 exon 71180413 71180524 71180413 ID=Msa0469370-mRNA-1:exon:17459;Parent=Msa0469370-mRNA-1
chr3_3 exon 71182064 71182152 71182064 ID=Msa0469370-mRNA-1:exon:17458;Parent=Msa0469370-mRNA-1
chr3_3 exon 71182256 71182326 71182256 ID=Msa0469370-mRNA-1:exon:17457;Parent=Msa0469370-mRNA-1
chr3_3 exon 71183223 71183450 71183223 ID=Msa0469370-mRNA-1:exon:17456;Parent=Msa0469370-mRNA-1
chr3_3 five_prime_UTR 71183340 71183450 71183340 ID=Msa0469370-mRNA-1:five_prime_utr;Parent=Msa0469370-mRNA-1
chr3_3 CDS 71183223 71183339 71183223 ID=Msa0469370-mRNA-1:cds;Parent=Msa0469370-mRNA-1
chr3_3 CDS 71182256 71182326 71182256 ID=Msa0469370-mRNA-1:cds;Parent=Msa0469370-mRNA-1
chr3_3 CDS 71182064 71182152 71182064 ID=Msa0469370-mRNA-1:cds;Parent=Msa0469370-mRNA-1
chr3_3 CDS 71180413 71180524 71180413 ID=Msa0469370-mRNA-1:cds;Parent=Msa0469370-mRNA-1
chr3_3 CDS 71179598 71179688 71179598 ID=Msa0469370-mRNA-1:cds;Parent=Msa0469370-mRNA-1
chr3_3 CDS 71179175 71179315 71179175 ID=Msa0469370-mRNA-1:cds;Parent=Msa0469370-mRNA-1
chr3_3 three_prime_UTR 71178981 71179174 71178981 ID=Msa0469370-mRNA-1:three_prime_utr;Parent=Msa0469370-mRNA-1
Gene Sequence

>Msa0469370

ATGGTGACTGTATCACCTCTAGCCAAATACAAACTCGTTTTCTTAGGTGATCAATCCGTTGGTAAAACCAGCATCATCACTCGCTTCATGTATGATAAATTCGACACTACCTATCAGGCGACAATTGGTATTGACTTTTTGTCGAAAACAATGTACCTTGAAGATCGAACAGTTCGTTTGCAGCTCTGGGATACTGCAGGGCAAGAAAGATTTAGAAGTCTCATTCCAAGTTATATAAGAGATTCTTCAGTCGCGGTTATTGTGTATGATGTTGCCAACCGGCAATCATTTCTTAACACTAACAAGTGGGTTGAGGAGGTACGTGCAGAACGAGGCAGTGATGTTATTATCGTTTTGGTTGGAAACAAAACTGATCTTGTTGAAAAAAGGCAAGTCTCTATAGAGGAAGGAGATGCCAAGTCGCGTGAGAGCGGGATCATGTTTATAGAAACCAGTGCAAAAGCAGGATTTAATATCAAGCCTTTATTTCGCAAGATTGCTTCAGCCTTGCCCGGGATGGAAAGTCTTTCAACAAAGCAAGAAGACATGGTTGATGTAAATTTAAAATCTACCGTGAATTCATCCAGGACAGAGCAGCAAGGTGGAGGTTGTTCGTGCTAA
Protein sequence

>Msa0469370

MVTVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTNKWVEEVRAERGSDVIIVLVGNKTDLVEKRQVSIEEGDAKSRESGIMFIETSAKAGFNIKPLFRKIASALPGMESLSTKQEDMVDVNLKSTVNSSRTEQQGGGCSC*