Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424460 | XP_003602163.1 | 95.045 | 222 | 8 | 1 | 1 | 219 | 1 | 222 | 4.82e-150 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424460 | sp|Q6NLQ3|GLTP2_ARATH | 50.893 | 224 | 102 | 4 | 1 | 218 | 1 | 222 | 1.44e-69 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424460 | G7J670 | 95.045 | 222 | 8 | 1 | 1 | 219 | 1 | 222 | 2.30e-150 | 426 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0424460 | Msa0471360 | 0.803198 | 3.909490e-49 | -8.615850e-47 |
| Msa0424460 | Msa0471510 | 0.934489 | 3.730871e-96 | -8.615850e-47 |
| Msa0424460 | Msa0758990 | 0.805806 | 1.117399e-49 | -8.615850e-47 |
| Msa0424460 | Msa0800120 | 0.806123 | 9.583452e-50 | -8.615850e-47 |
| Msa0424460 | Msa0838210 | 0.803527 | 3.340832e-49 | -8.615850e-47 |
| Msa0424460 | Msa1107330 | 0.805408 | 1.354630e-49 | -8.615850e-47 |
| Msa0303900 | Msa0424460 | 0.809100 | 2.235778e-50 | -8.615850e-47 |
| Msa0333770 | Msa0424460 | 0.802749 | 4.839846e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424460 | MtrunA17_Chr3g0126121 | 95.045 | 222 | 8 | 1 | 1 | 219 | 1 | 222 | 4.43e-154 | 426 |
| Msa0424460 | MtrunA17_Chr1g0159211 | 66.210 | 219 | 69 | 3 | 5 | 219 | 6 | 223 | 1.22e-100 | 291 |
| Msa0424460 | MtrunA17_Chr1g0159221 | 64.286 | 224 | 74 | 3 | 1 | 219 | 1 | 223 | 3.76e-99 | 287 |
| Msa0424460 | MtrunA17_Chr1g0187451 | 35.829 | 187 | 112 | 3 | 36 | 219 | 21 | 202 | 7.18e-34 | 120 |
| Msa0424460 | MtrunA17_Chr1g0166501 | 36.898 | 187 | 110 | 4 | 36 | 219 | 21 | 202 | 1.14e-31 | 114 |
| Msa0424460 | MtrunA17_Chr1g0187431 | 38.000 | 100 | 58 | 2 | 61 | 157 | 1 | 99 | 4.85e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0424460 | AT1G21360.1 | 50.893 | 224 | 102 | 4 | 1 | 218 | 1 | 222 | 1.47e-70 | 215 |
| Msa0424460 | AT3G21260.3 | 50.442 | 226 | 103 | 3 | 1 | 218 | 8 | 232 | 7.84e-64 | 198 |
| Msa0424460 | AT1G21360.3 | 51.497 | 167 | 73 | 4 | 1 | 161 | 1 | 165 | 6.63e-50 | 161 |
| Msa0424460 | AT1G21360.2 | 50.932 | 161 | 75 | 2 | 61 | 218 | 1 | 160 | 1.07e-47 | 154 |
| Msa0424460 | AT3G21260.2 | 50.000 | 148 | 70 | 2 | 74 | 218 | 2 | 148 | 8.79e-38 | 129 |
| Msa0424460 | AT3G21260.1 | 49.306 | 144 | 69 | 2 | 78 | 218 | 1 | 143 | 1.01e-35 | 123 |
| Msa0424460 | AT2G33470.2 | 37.838 | 185 | 103 | 5 | 40 | 219 | 25 | 202 | 2.27e-30 | 111 |
| Msa0424460 | AT2G33470.1 | 37.838 | 185 | 103 | 5 | 40 | 219 | 25 | 202 | 2.27e-30 | 111 |
Find 50 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGATTGTTTCAAATATTT+TGG | 0.115348 | 3_2:+74648444 | None:intergenic |
| CCCCTTAACCAATTCAAATT+TGG | 0.141878 | 3_2:-74647735 | Msa0424460:CDS |
| ATTTGGTTACCTTAATATTC+TGG | 0.236559 | 3_2:+74648029 | None:intergenic |
| TAAATAAGCTTGGTGAGTTT+TGG | 0.262198 | 3_2:-74648389 | Msa0424460:five_prime_UTR |
| CCAGCCTCATGATCTTCTTC+AGG | 0.290427 | 3_2:+74648251 | None:intergenic |
| CACCAAATTTGAATTGGTTA+AGG | 0.309265 | 3_2:+74647733 | None:intergenic |
| TACATGGTTCTACAAGTTCT+TGG | 0.339211 | 3_2:-74648191 | Msa0424460:intron |
| AGTGTATACTGTATATAGTT+TGG | 0.344386 | 3_2:-74646702 | Msa0424460:three_prime_UTR |
| ACCAAATTTGAATTGGTTAA+GGG | 0.356315 | 3_2:+74647734 | None:intergenic |
| TATCTCCACCAAATTTGAAT+TGG | 0.358963 | 3_2:+74647727 | None:intergenic |
| AGACATTCACCAGAATATTA+AGG | 0.371673 | 3_2:-74648038 | Msa0424460:intron |
| AAAGATAGGAAAGGCTTTGT+TGG | 0.395007 | 3_2:+74648218 | None:intergenic |
| GAACCATGTAACATAAAGAT+AGG | 0.421906 | 3_2:+74648204 | None:intergenic |
| TTTGTATCAGAGAAAGTATA+AGG | 0.423428 | 3_2:-74648358 | Msa0424460:five_prime_UTR |
| CTTTGAAACCATGGCATGGA+TGG | 0.431560 | 3_2:-74647407 | Msa0424460:CDS |
| CGAAGACTGTGACACCCTAA+TGG | 0.438068 | 3_2:-74646957 | Msa0424460:CDS |
| AAGATAGGAAAGGCTTTGTT+GGG | 0.447613 | 3_2:+74648219 | None:intergenic |
| TTTCCTATCTTTATGTTACA+TGG | 0.447670 | 3_2:-74648207 | Msa0424460:CDS |
| TGTCTCAAAACAGCCATTGT+TGG | 0.448554 | 3_2:+74648061 | None:intergenic |
| CTTAACCAATTCAAATTTGG+TGG | 0.455065 | 3_2:-74647732 | Msa0424460:CDS |
| CGTGCCACTCTGCAGATCCC+TGG | 0.476537 | 3_2:-74647517 | Msa0424460:CDS |
| ACAACGCCGATGTGAAATCC+AGG | 0.494440 | 3_2:+74647499 | None:intergenic |
| GTAATTTACATGAAAACAGC+AGG | 0.497591 | 3_2:+74646671 | None:intergenic |
| CCAAATTTGAATTGGTTAAG+GGG | 0.508657 | 3_2:+74647735 | None:intergenic |
| AGAAAGTGTATAACTTGGAC+AGG | 0.511125 | 3_2:-74646775 | Msa0424460:CDS |
| GAAACAATTAATAATTGGCA+TGG | 0.513609 | 3_2:-74648497 | None:intergenic |
| TTTGCAGAAAGTGTATAACT+TGG | 0.513854 | 3_2:-74646780 | Msa0424460:intron |
| CAATGGATATCCTCAAGAAA+AGG | 0.520025 | 3_2:+74646902 | None:intergenic |
| AAAGTATAAGGAAAATGAAG+AGG | 0.529810 | 3_2:-74648346 | Msa0424460:exon |
| AAGCACTGAAAGCTCTTCAA+TGG | 0.530059 | 3_2:+74648286 | None:intergenic |
| GATTGTCTTGCAGATAAGGT+AGG | 0.536852 | 3_2:-74648085 | Msa0424460:intron |
| CTTGCAACTTTGCATCCAGC+TGG | 0.542395 | 3_2:-74646603 | None:intergenic |
| ATTGTCTTGCAGATAAGGTA+GGG | 0.565172 | 3_2:-74648084 | Msa0424460:intron |
| AACGCAAAGAAGAGAGTTAG+CGG | 0.567490 | 3_2:-74647680 | Msa0424460:CDS |
| CCTGAAGAAGATCATGAGGC+TGG | 0.568689 | 3_2:-74648251 | Msa0424460:CDS |
| ATGATGCAACTTTGAAACCA+TGG | 0.590512 | 3_2:-74647416 | Msa0424460:CDS |
| TTACATGAAAACAGCAGGGG+AGG | 0.599584 | 3_2:+74646676 | None:intergenic |
| GATGCAATCCATCCATGCCA+TGG | 0.623186 | 3_2:+74647399 | None:intergenic |
| TCAATCTTACTAGAATACAA+TGG | 0.627880 | 3_2:+74646885 | None:intergenic |
| TTCAAGTCAGAAACTAGCAA+AGG | 0.631092 | 3_2:-74647704 | Msa0424460:CDS |
| ATGTAACATAAAGATAGGAA+AGG | 0.631348 | 3_2:+74648209 | None:intergenic |
| AAAAGAGAGAGAAACTCACA+AGG | 0.634507 | 3_2:+74648472 | None:intergenic |
| GCAACTTTGAAACCATGGCA+TGG | 0.637985 | 3_2:-74647411 | Msa0424460:CDS |
| CAGATCCCTGGATTTCACAT+CGG | 0.644246 | 3_2:-74647505 | Msa0424460:CDS |
| TAATTTACATGAAAACAGCA+GGG | 0.653783 | 3_2:+74646672 | None:intergenic |
| CAAACCTGAAGAAGATCATG+AGG | 0.654696 | 3_2:-74648255 | Msa0424460:CDS |
| CAACGCCGATGTGAAATCCA+GGG | 0.665147 | 3_2:+74647500 | None:intergenic |
| AGATAAGGTAGGGCCAACAA+TGG | 0.678454 | 3_2:-74648074 | Msa0424460:CDS |
| AATTTACATGAAAACAGCAG+GGG | 0.694888 | 3_2:+74646673 | None:intergenic |
| AAATCCAGGGATCTGCAGAG+TGG | 0.716711 | 3_2:+74647513 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATAAATATTCATC+AGG | + | chr3_2:74648293-74648312 | None:intergenic | 10.0% |
| !! | AAAATAAATAAATATTCATC+AGG | + | chr3_2:74648293-74648312 | None:intergenic | 10.0% |
| !! | TTTCAAGAAAAAATAAATTG+TGG | - | chr3_2:74647485-74647504 | Msa0424460:CDS | 15.0% |
| !! | TTTCAAGAAAAAATAAATTG+TGG | - | chr3_2:74647485-74647504 | Msa0424460:CDS | 15.0% |
| !!! | GTTGATTGTTTCAAATATTT+TGG | + | chr3_2:74646649-74646668 | None:intergenic | 20.0% |
| !!! | ATTTTGCTTATAAATAAGCT+TGG | - | chr3_2:74646691-74646710 | Msa0424460:three_prime_UTR | 20.0% |
| !! | AAACATACTTAAAATTTGTC+TGG | + | chr3_2:74646975-74646994 | None:intergenic | 20.0% |
| !! | CAACAAAAAACTTATTCATA+TGG | + | chr3_2:74647533-74647552 | None:intergenic | 20.0% |
| !!! | GTTGATTGTTTCAAATATTT+TGG | + | chr3_2:74646649-74646668 | None:intergenic | 20.0% |
| !!! | ATTTTGCTTATAAATAAGCT+TGG | - | chr3_2:74646691-74646710 | Msa0424460:three_prime_UTR | 20.0% |
| !! | AAACATACTTAAAATTTGTC+TGG | + | chr3_2:74646975-74646994 | None:intergenic | 20.0% |
| !! | CAACAAAAAACTTATTCATA+TGG | + | chr3_2:74647533-74647552 | None:intergenic | 20.0% |
| !! | TTTGTATCAGAGAAAGTATA+AGG | - | chr3_2:74646732-74646751 | Msa0424460:three_prime_UTR | 25.0% |
| ! | AAAGTATAAGGAAAATGAAG+AGG | - | chr3_2:74646744-74646763 | Msa0424460:exon | 25.0% |
| ! | ATGTAACATAAAGATAGGAA+AGG | + | chr3_2:74646884-74646903 | None:intergenic | 25.0% |
| ! | TTTCCTATCTTTATGTTACA+TGG | - | chr3_2:74646883-74646902 | Msa0424460:intron | 25.0% |
| ! | ATTTGGTTACCTTAATATTC+TGG | + | chr3_2:74647064-74647083 | None:intergenic | 25.0% |
| ! | TCAAATTATTACATGTGTCA+AGG | + | chr3_2:74647114-74647133 | None:intergenic | 25.0% |
| ! | ACTATTAGTTAGTTACACAT+TGG | - | chr3_2:74647243-74647262 | Msa0424460:intron | 25.0% |
| ! | ACCAAATTTGAATTGGTTAA+GGG | + | chr3_2:74647359-74647378 | None:intergenic | 25.0% |
| ! | AAAAGACCCTAAAAAGAATA+TGG | - | chr3_2:74647630-74647649 | Msa0424460:intron | 25.0% |
| !!! | TTTTGGTAACTATTGAAAAG+TGG | + | chr3_2:74647760-74647779 | None:intergenic | 25.0% |
| !! | CAATGTCACAATTTCAATTT+TGG | + | chr3_2:74647777-74647796 | None:intergenic | 25.0% |
| ! | ACAATGTACAACTTGTATTA+CGG | + | chr3_2:74647881-74647900 | None:intergenic | 25.0% |
| ! | TAAATCCTAAACTCGAAATA+AGG | - | chr3_2:74647900-74647919 | Msa0424460:intron | 25.0% |
| ! | ACTAACAGAATTAATATTGC+AGG | - | chr3_2:74648052-74648071 | Msa0424460:CDS | 25.0% |
| !!! | AATCTGCATTTTTTCCATTA+GGG | + | chr3_2:74648150-74648169 | None:intergenic | 25.0% |
| !!! | AAATCTGCATTTTTTCCATT+AGG | + | chr3_2:74648151-74648170 | None:intergenic | 25.0% |
| ! | TCAATCTTACTAGAATACAA+TGG | + | chr3_2:74648208-74648227 | None:intergenic | 25.0% |
| ! | AGTGTATACTGTATATAGTT+TGG | - | chr3_2:74648388-74648407 | Msa0424460:five_prime_UTR | 25.0% |
| ! | TAATTTACATGAAAACAGCA+GGG | + | chr3_2:74648421-74648440 | None:intergenic | 25.0% |
| !! | TTTGTATCAGAGAAAGTATA+AGG | - | chr3_2:74646732-74646751 | Msa0424460:three_prime_UTR | 25.0% |
| ! | AAAGTATAAGGAAAATGAAG+AGG | - | chr3_2:74646744-74646763 | Msa0424460:exon | 25.0% |
| ! | ATGTAACATAAAGATAGGAA+AGG | + | chr3_2:74646884-74646903 | None:intergenic | 25.0% |
| ! | TTTCCTATCTTTATGTTACA+TGG | - | chr3_2:74646883-74646902 | Msa0424460:intron | 25.0% |
| ! | ATTTGGTTACCTTAATATTC+TGG | + | chr3_2:74647064-74647083 | None:intergenic | 25.0% |
| ! | TCAAATTATTACATGTGTCA+AGG | + | chr3_2:74647114-74647133 | None:intergenic | 25.0% |
| ! | ACTATTAGTTAGTTACACAT+TGG | - | chr3_2:74647243-74647262 | Msa0424460:intron | 25.0% |
| ! | ACCAAATTTGAATTGGTTAA+GGG | + | chr3_2:74647359-74647378 | None:intergenic | 25.0% |
| ! | AAAAGACCCTAAAAAGAATA+TGG | - | chr3_2:74647630-74647649 | Msa0424460:intron | 25.0% |
| !!! | TTTTGGTAACTATTGAAAAG+TGG | + | chr3_2:74647760-74647779 | None:intergenic | 25.0% |
| !! | CAATGTCACAATTTCAATTT+TGG | + | chr3_2:74647777-74647796 | None:intergenic | 25.0% |
| ! | ACAATGTACAACTTGTATTA+CGG | + | chr3_2:74647881-74647900 | None:intergenic | 25.0% |
| ! | TAAATCCTAAACTCGAAATA+AGG | - | chr3_2:74647900-74647919 | Msa0424460:intron | 25.0% |
| ! | ACTAACAGAATTAATATTGC+AGG | - | chr3_2:74648052-74648071 | Msa0424460:CDS | 25.0% |
| !!! | AATCTGCATTTTTTCCATTA+GGG | + | chr3_2:74648150-74648169 | None:intergenic | 25.0% |
| !!! | AAATCTGCATTTTTTCCATT+AGG | + | chr3_2:74648151-74648170 | None:intergenic | 25.0% |
| ! | TCAATCTTACTAGAATACAA+TGG | + | chr3_2:74648208-74648227 | None:intergenic | 25.0% |
| ! | AGTGTATACTGTATATAGTT+TGG | - | chr3_2:74648388-74648407 | Msa0424460:five_prime_UTR | 25.0% |
| ! | TAATTTACATGAAAACAGCA+GGG | + | chr3_2:74648421-74648440 | None:intergenic | 25.0% |
| !! | TAAATAAGCTTGGTGAGTTT+TGG | - | chr3_2:74646701-74646720 | Msa0424460:three_prime_UTR | 30.0% |
| GAACCATGTAACATAAAGAT+AGG | + | chr3_2:74646889-74646908 | None:intergenic | 30.0% | |
| AGACATTCACCAGAATATTA+AGG | - | chr3_2:74647052-74647071 | Msa0424460:intron | 30.0% | |
| CCAAATTTGAATTGGTTAAG+GGG | + | chr3_2:74647358-74647377 | None:intergenic | 30.0% | |
| CACCAAATTTGAATTGGTTA+AGG | + | chr3_2:74647360-74647379 | None:intergenic | 30.0% | |
| CTTAACCAATTCAAATTTGG+TGG | - | chr3_2:74647358-74647377 | Msa0424460:intron | 30.0% | |
| TATCTCCACCAAATTTGAAT+TGG | + | chr3_2:74647366-74647385 | None:intergenic | 30.0% | |
| ! | CTTGCTCCATATTCTTTTTA+GGG | + | chr3_2:74647639-74647658 | None:intergenic | 30.0% |
| ATTGAAAAGTGGAAGAAAAG+AGG | + | chr3_2:74647749-74647768 | None:intergenic | 30.0% | |
| GCTCATAGTTACTAATAAGT+GGG | - | chr3_2:74647811-74647830 | Msa0424460:intron | 30.0% | |
| AATTTCGTTACCAATCATTG+TGG | - | chr3_2:74647967-74647986 | Msa0424460:intron | 30.0% | |
| AAACAATGAACCACAATGAT+TGG | + | chr3_2:74647980-74647999 | None:intergenic | 30.0% | |
| ! | TAACTTTACTCTTTTGAACC+CGG | - | chr3_2:74648011-74648030 | Msa0424460:intron | 30.0% |
| AACAGAATTAATATTGCAGG+TGG | - | chr3_2:74648055-74648074 | Msa0424460:CDS | 30.0% | |
| ! | TCCATGAAAGTTTTTGTATC+AGG | + | chr3_2:74648095-74648114 | None:intergenic | 30.0% |
| ! | TTTGCAGAAAGTGTATAACT+TGG | - | chr3_2:74648310-74648329 | Msa0424460:CDS | 30.0% |
| AATTTACATGAAAACAGCAG+GGG | + | chr3_2:74648420-74648439 | None:intergenic | 30.0% | |
| GTAATTTACATGAAAACAGC+AGG | + | chr3_2:74648422-74648441 | None:intergenic | 30.0% | |
| !! | TAAATAAGCTTGGTGAGTTT+TGG | - | chr3_2:74646701-74646720 | Msa0424460:three_prime_UTR | 30.0% |
| GAACCATGTAACATAAAGAT+AGG | + | chr3_2:74646889-74646908 | None:intergenic | 30.0% | |
| AGACATTCACCAGAATATTA+AGG | - | chr3_2:74647052-74647071 | Msa0424460:intron | 30.0% | |
| CCAAATTTGAATTGGTTAAG+GGG | + | chr3_2:74647358-74647377 | None:intergenic | 30.0% | |
| CACCAAATTTGAATTGGTTA+AGG | + | chr3_2:74647360-74647379 | None:intergenic | 30.0% | |
| CTTAACCAATTCAAATTTGG+TGG | - | chr3_2:74647358-74647377 | Msa0424460:intron | 30.0% | |
| TATCTCCACCAAATTTGAAT+TGG | + | chr3_2:74647366-74647385 | None:intergenic | 30.0% | |
| ! | CTTGCTCCATATTCTTTTTA+GGG | + | chr3_2:74647639-74647658 | None:intergenic | 30.0% |
| ATTGAAAAGTGGAAGAAAAG+AGG | + | chr3_2:74647749-74647768 | None:intergenic | 30.0% | |
| GCTCATAGTTACTAATAAGT+GGG | - | chr3_2:74647811-74647830 | Msa0424460:intron | 30.0% | |
| AATTTCGTTACCAATCATTG+TGG | - | chr3_2:74647967-74647986 | Msa0424460:intron | 30.0% | |
| AAACAATGAACCACAATGAT+TGG | + | chr3_2:74647980-74647999 | None:intergenic | 30.0% | |
| ! | TAACTTTACTCTTTTGAACC+CGG | - | chr3_2:74648011-74648030 | Msa0424460:intron | 30.0% |
| AACAGAATTAATATTGCAGG+TGG | - | chr3_2:74648055-74648074 | Msa0424460:CDS | 30.0% | |
| ! | TCCATGAAAGTTTTTGTATC+AGG | + | chr3_2:74648095-74648114 | None:intergenic | 30.0% |
| ! | TTTGCAGAAAGTGTATAACT+TGG | - | chr3_2:74648310-74648329 | Msa0424460:CDS | 30.0% |
| AATTTACATGAAAACAGCAG+GGG | + | chr3_2:74648420-74648439 | None:intergenic | 30.0% | |
| GTAATTTACATGAAAACAGC+AGG | + | chr3_2:74648422-74648441 | None:intergenic | 30.0% | |
| AAAAGAGAGAGAAACTCACA+AGG | + | chr3_2:74646621-74646640 | None:intergenic | 35.0% | |
| !! | AAGATAGGAAAGGCTTTGTT+GGG | + | chr3_2:74646874-74646893 | None:intergenic | 35.0% |
| ! | AAAGATAGGAAAGGCTTTGT+TGG | + | chr3_2:74646875-74646894 | None:intergenic | 35.0% |
| ! | TACATGGTTCTACAAGTTCT+TGG | - | chr3_2:74646899-74646918 | Msa0424460:CDS | 35.0% |
| GATTGATTGTCTTGCAGATA+AGG | - | chr3_2:74647001-74647020 | Msa0424460:CDS | 35.0% | |
| ATTGTCTTGCAGATAAGGTA+GGG | - | chr3_2:74647006-74647025 | Msa0424460:CDS | 35.0% | |
| CCCCTTAACCAATTCAAATT+TGG | - | chr3_2:74647355-74647374 | Msa0424460:intron | 35.0% | |
| TTCAAGTCAGAAACTAGCAA+AGG | - | chr3_2:74647386-74647405 | Msa0424460:CDS | 35.0% | |
| ! | GCTTGCTCCATATTCTTTTT+AGG | + | chr3_2:74647640-74647659 | None:intergenic | 35.0% |
| !! | ATGATGCAACTTTGAAACCA+TGG | - | chr3_2:74647674-74647693 | Msa0424460:intron | 35.0% |
| TGGAAGAAAAGAGGAAGAAA+TGG | + | chr3_2:74647740-74647759 | None:intergenic | 35.0% | |
| TGACATTGAACTGTTGAGTA+TGG | - | chr3_2:74647789-74647808 | Msa0424460:intron | 35.0% | |
| GGCTCATAGTTACTAATAAG+TGG | - | chr3_2:74647810-74647829 | Msa0424460:intron | 35.0% | |
| ! | AACTTTACTCTTTTGAACCC+GGG | - | chr3_2:74648012-74648031 | Msa0424460:intron | 35.0% |
| GCCTGATACAAAAACTTTCA+TGG | - | chr3_2:74648091-74648110 | Msa0424460:intron | 35.0% | |
| CAATGGATATCCTCAAGAAA+AGG | + | chr3_2:74648191-74648210 | None:intergenic | 35.0% | |
| CATCAATTGTTCATGCTCAT+TGG | - | chr3_2:74648248-74648267 | Msa0424460:CDS | 35.0% | |
| TCATCAGGTAAGTATATGAC+AGG | + | chr3_2:74648278-74648297 | None:intergenic | 35.0% | |
| ! | AGAAAGTGTATAACTTGGAC+AGG | - | chr3_2:74648315-74648334 | Msa0424460:CDS | 35.0% |
| AAAAGAGAGAGAAACTCACA+AGG | + | chr3_2:74646621-74646640 | None:intergenic | 35.0% | |
| !! | AAGATAGGAAAGGCTTTGTT+GGG | + | chr3_2:74646874-74646893 | None:intergenic | 35.0% |
| ! | AAAGATAGGAAAGGCTTTGT+TGG | + | chr3_2:74646875-74646894 | None:intergenic | 35.0% |
| ! | TACATGGTTCTACAAGTTCT+TGG | - | chr3_2:74646899-74646918 | Msa0424460:CDS | 35.0% |
| GATTGATTGTCTTGCAGATA+AGG | - | chr3_2:74647001-74647020 | Msa0424460:CDS | 35.0% | |
| ATTGTCTTGCAGATAAGGTA+GGG | - | chr3_2:74647006-74647025 | Msa0424460:CDS | 35.0% | |
| CCCCTTAACCAATTCAAATT+TGG | - | chr3_2:74647355-74647374 | Msa0424460:intron | 35.0% | |
| TTCAAGTCAGAAACTAGCAA+AGG | - | chr3_2:74647386-74647405 | Msa0424460:CDS | 35.0% | |
| ! | GCTTGCTCCATATTCTTTTT+AGG | + | chr3_2:74647640-74647659 | None:intergenic | 35.0% |
| !! | ATGATGCAACTTTGAAACCA+TGG | - | chr3_2:74647674-74647693 | Msa0424460:intron | 35.0% |
| TGGAAGAAAAGAGGAAGAAA+TGG | + | chr3_2:74647740-74647759 | None:intergenic | 35.0% | |
| TGACATTGAACTGTTGAGTA+TGG | - | chr3_2:74647789-74647808 | Msa0424460:intron | 35.0% | |
| GGCTCATAGTTACTAATAAG+TGG | - | chr3_2:74647810-74647829 | Msa0424460:intron | 35.0% | |
| ! | AACTTTACTCTTTTGAACCC+GGG | - | chr3_2:74648012-74648031 | Msa0424460:intron | 35.0% |
| GCCTGATACAAAAACTTTCA+TGG | - | chr3_2:74648091-74648110 | Msa0424460:intron | 35.0% | |
| CAATGGATATCCTCAAGAAA+AGG | + | chr3_2:74648191-74648210 | None:intergenic | 35.0% | |
| CATCAATTGTTCATGCTCAT+TGG | - | chr3_2:74648248-74648267 | Msa0424460:CDS | 35.0% | |
| TCATCAGGTAAGTATATGAC+AGG | + | chr3_2:74648278-74648297 | None:intergenic | 35.0% | |
| ! | AGAAAGTGTATAACTTGGAC+AGG | - | chr3_2:74648315-74648334 | Msa0424460:CDS | 35.0% |
| !! | AAGCACTGAAAGCTCTTCAA+TGG | + | chr3_2:74646807-74646826 | None:intergenic | 40.0% |
| CAAACCTGAAGAAGATCATG+AGG | - | chr3_2:74646835-74646854 | Msa0424460:intron | 40.0% | |
| GATTGTCTTGCAGATAAGGT+AGG | - | chr3_2:74647005-74647024 | Msa0424460:CDS | 40.0% | |
| TGTCTCAAAACAGCCATTGT+TGG | + | chr3_2:74647032-74647051 | None:intergenic | 40.0% | |
| GTCATGTGTGTGTGAGTATT+TGG | + | chr3_2:74647081-74647100 | None:intergenic | 40.0% | |
| ! | TATGTGTCATTGCATTGCAG+AGG | - | chr3_2:74647309-74647328 | Msa0424460:intron | 40.0% |
| AACGCAAAGAAGAGAGTTAG+CGG | - | chr3_2:74647410-74647429 | Msa0424460:CDS | 40.0% | |
| ! | AATCCTTTGTTTGGCTCACT+AGG | - | chr3_2:74647438-74647457 | Msa0424460:CDS | 40.0% |
| CCTGATTACAACATTACCTC+TGG | + | chr3_2:74647857-74647876 | None:intergenic | 40.0% | |
| CCAGAGGTAATGTTGTAATC+AGG | - | chr3_2:74647854-74647873 | Msa0424460:intron | 40.0% | |
| !! | CAGCACCTTATTTCGAGTTT+AGG | + | chr3_2:74647908-74647927 | None:intergenic | 40.0% |
| TTCATGTTCAAATCGCAACC+CGG | + | chr3_2:74648033-74648052 | None:intergenic | 40.0% | |
| ! | AGTCTTCGTCTTTTTCTCTG+AGG | + | chr3_2:74648121-74648140 | None:intergenic | 40.0% |
| !! | AAGCACTGAAAGCTCTTCAA+TGG | + | chr3_2:74646807-74646826 | None:intergenic | 40.0% |
| CAAACCTGAAGAAGATCATG+AGG | - | chr3_2:74646835-74646854 | Msa0424460:intron | 40.0% | |
| GATTGTCTTGCAGATAAGGT+AGG | - | chr3_2:74647005-74647024 | Msa0424460:CDS | 40.0% | |
| TGTCTCAAAACAGCCATTGT+TGG | + | chr3_2:74647032-74647051 | None:intergenic | 40.0% | |
| GTCATGTGTGTGTGAGTATT+TGG | + | chr3_2:74647081-74647100 | None:intergenic | 40.0% | |
| ! | TATGTGTCATTGCATTGCAG+AGG | - | chr3_2:74647309-74647328 | Msa0424460:intron | 40.0% |
| AACGCAAAGAAGAGAGTTAG+CGG | - | chr3_2:74647410-74647429 | Msa0424460:CDS | 40.0% | |
| ! | AATCCTTTGTTTGGCTCACT+AGG | - | chr3_2:74647438-74647457 | Msa0424460:CDS | 40.0% |
| CCTGATTACAACATTACCTC+TGG | + | chr3_2:74647857-74647876 | None:intergenic | 40.0% | |
| CCAGAGGTAATGTTGTAATC+AGG | - | chr3_2:74647854-74647873 | Msa0424460:intron | 40.0% | |
| !! | CAGCACCTTATTTCGAGTTT+AGG | + | chr3_2:74647908-74647927 | None:intergenic | 40.0% |
| TTCATGTTCAAATCGCAACC+CGG | + | chr3_2:74648033-74648052 | None:intergenic | 40.0% | |
| ! | AGTCTTCGTCTTTTTCTCTG+AGG | + | chr3_2:74648121-74648140 | None:intergenic | 40.0% |
| AGATAAGGTAGGGCCAACAA+TGG | - | chr3_2:74647016-74647035 | Msa0424460:CDS | 45.0% | |
| TACTCACACACACATGACAC+TGG | - | chr3_2:74647083-74647102 | Msa0424460:intron | 45.0% | |
| TGAGACAACATCGACACATG+TGG | + | chr3_2:74647160-74647179 | None:intergenic | 45.0% | |
| TGTCGATGTTGTCTCAGTGT+CGG | - | chr3_2:74647164-74647183 | Msa0424460:intron | 45.0% | |
| TGTCATTGCATTGCAGAGGT+TGG | - | chr3_2:74647313-74647332 | Msa0424460:intron | 45.0% | |
| GCGGCAGTAAATCCTTTGTT+TGG | - | chr3_2:74647429-74647448 | Msa0424460:CDS | 45.0% | |
| TCACCTAGTGAGCCAAACAA+AGG | + | chr3_2:74647444-74647463 | None:intergenic | 45.0% | |
| CAGATCCCTGGATTTCACAT+CGG | - | chr3_2:74647585-74647604 | Msa0424460:intron | 45.0% | |
| !! | GCAACTTTGAAACCATGGCA+TGG | - | chr3_2:74647679-74647698 | Msa0424460:CDS | 45.0% |
| !! | CTTTGAAACCATGGCATGGA+TGG | - | chr3_2:74647683-74647702 | Msa0424460:CDS | 45.0% |
| CACTATGCAGTTGGAGACAT+AGG | - | chr3_2:74647932-74647951 | Msa0424460:intron | 45.0% | |
| GTTGGAGACATAGGCACAAT+TGG | - | chr3_2:74647941-74647960 | Msa0424460:intron | 45.0% | |
| TCATGTTCAAATCGCAACCC+GGG | + | chr3_2:74648032-74648051 | None:intergenic | 45.0% | |
| ! | GTTGCTTGTGCCTTTTCTTG+AGG | - | chr3_2:74648178-74648197 | Msa0424460:intron | 45.0% |
| TTACATGAAAACAGCAGGGG+AGG | + | chr3_2:74648417-74648436 | None:intergenic | 45.0% | |
| AGATAAGGTAGGGCCAACAA+TGG | - | chr3_2:74647016-74647035 | Msa0424460:CDS | 45.0% | |
| TACTCACACACACATGACAC+TGG | - | chr3_2:74647083-74647102 | Msa0424460:intron | 45.0% | |
| TGAGACAACATCGACACATG+TGG | + | chr3_2:74647160-74647179 | None:intergenic | 45.0% | |
| TGTCGATGTTGTCTCAGTGT+CGG | - | chr3_2:74647164-74647183 | Msa0424460:intron | 45.0% | |
| TGTCATTGCATTGCAGAGGT+TGG | - | chr3_2:74647313-74647332 | Msa0424460:intron | 45.0% | |
| GCGGCAGTAAATCCTTTGTT+TGG | - | chr3_2:74647429-74647448 | Msa0424460:CDS | 45.0% | |
| TCACCTAGTGAGCCAAACAA+AGG | + | chr3_2:74647444-74647463 | None:intergenic | 45.0% | |
| CAGATCCCTGGATTTCACAT+CGG | - | chr3_2:74647585-74647604 | Msa0424460:intron | 45.0% | |
| !! | GCAACTTTGAAACCATGGCA+TGG | - | chr3_2:74647679-74647698 | Msa0424460:CDS | 45.0% |
| !! | CTTTGAAACCATGGCATGGA+TGG | - | chr3_2:74647683-74647702 | Msa0424460:CDS | 45.0% |
| CACTATGCAGTTGGAGACAT+AGG | - | chr3_2:74647932-74647951 | Msa0424460:intron | 45.0% | |
| GTTGGAGACATAGGCACAAT+TGG | - | chr3_2:74647941-74647960 | Msa0424460:intron | 45.0% | |
| TCATGTTCAAATCGCAACCC+GGG | + | chr3_2:74648032-74648051 | None:intergenic | 45.0% | |
| ! | GTTGCTTGTGCCTTTTCTTG+AGG | - | chr3_2:74648178-74648197 | Msa0424460:intron | 45.0% |
| TTACATGAAAACAGCAGGGG+AGG | + | chr3_2:74648417-74648436 | None:intergenic | 45.0% | |
| CCAGCCTCATGATCTTCTTC+AGG | + | chr3_2:74646842-74646861 | None:intergenic | 50.0% | |
| CCTGAAGAAGATCATGAGGC+TGG | - | chr3_2:74646839-74646858 | Msa0424460:intron | 50.0% | |
| AAATCCAGGGATCTGCAGAG+TGG | + | chr3_2:74647580-74647599 | None:intergenic | 50.0% | |
| CAACGCCGATGTGAAATCCA+GGG | + | chr3_2:74647593-74647612 | None:intergenic | 50.0% | |
| ACAACGCCGATGTGAAATCC+AGG | + | chr3_2:74647594-74647613 | None:intergenic | 50.0% | |
| GATGCAATCCATCCATGCCA+TGG | + | chr3_2:74647694-74647713 | None:intergenic | 50.0% | |
| TGCTGCAGACACTATGCAGT+TGG | - | chr3_2:74647923-74647942 | Msa0424460:intron | 50.0% | |
| CGAAGACTGTGACACCCTAA+TGG | - | chr3_2:74648133-74648152 | Msa0424460:intron | 50.0% | |
| CCAGCCTCATGATCTTCTTC+AGG | + | chr3_2:74646842-74646861 | None:intergenic | 50.0% | |
| CCTGAAGAAGATCATGAGGC+TGG | - | chr3_2:74646839-74646858 | Msa0424460:intron | 50.0% | |
| AAATCCAGGGATCTGCAGAG+TGG | + | chr3_2:74647580-74647599 | None:intergenic | 50.0% | |
| CAACGCCGATGTGAAATCCA+GGG | + | chr3_2:74647593-74647612 | None:intergenic | 50.0% | |
| ACAACGCCGATGTGAAATCC+AGG | + | chr3_2:74647594-74647613 | None:intergenic | 50.0% | |
| GATGCAATCCATCCATGCCA+TGG | + | chr3_2:74647694-74647713 | None:intergenic | 50.0% | |
| TGCTGCAGACACTATGCAGT+TGG | - | chr3_2:74647923-74647942 | Msa0424460:intron | 50.0% | |
| CGAAGACTGTGACACCCTAA+TGG | - | chr3_2:74648133-74648152 | Msa0424460:intron | 50.0% | |
| CATTACCTCTGGACCGTAGC+TGG | + | chr3_2:74647846-74647865 | None:intergenic | 55.0% | |
| CATTACCTCTGGACCGTAGC+TGG | + | chr3_2:74647846-74647865 | None:intergenic | 55.0% | |
| TGGGCAAGTCGCTCCAGCTA+CGG | - | chr3_2:74647830-74647849 | Msa0424460:intron | 60.0% | |
| TGGGCAAGTCGCTCCAGCTA+CGG | - | chr3_2:74647830-74647849 | Msa0424460:intron | 60.0% | |
| ! | CGTGCCACTCTGCAGATCCC+TGG | - | chr3_2:74647573-74647592 | Msa0424460:intron | 65.0% |
| TCGCTCCAGCTACGGTCCAG+AGG | - | chr3_2:74647838-74647857 | Msa0424460:intron | 65.0% | |
| ! | CGTGCCACTCTGCAGATCCC+TGG | - | chr3_2:74647573-74647592 | Msa0424460:intron | 65.0% |
| TCGCTCCAGCTACGGTCCAG+AGG | - | chr3_2:74647838-74647857 | Msa0424460:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 74646606 | 74648506 | 74646606 | ID=Msa0424460;Name=Msa0424460 |
| chr3_2 | mRNA | 74646606 | 74648506 | 74646606 | ID=Msa0424460-mRNA-1;Parent=Msa0424460;Name=Msa0424460-mRNA-1;_AED=0.17;_eAED=0.17;_QI=152|0.8|0.66|1|1|1|6|154|219 |
| chr3_2 | exon | 74646606 | 74646795 | 74646606 | ID=Msa0424460-mRNA-1:exon:18902;Parent=Msa0424460-mRNA-1 |
| chr3_2 | exon | 74646895 | 74647038 | 74646895 | ID=Msa0424460-mRNA-1:exon:18901;Parent=Msa0424460-mRNA-1 |
| chr3_2 | exon | 74647386 | 74647540 | 74647386 | ID=Msa0424460-mRNA-1:exon:18900;Parent=Msa0424460-mRNA-1 |
| chr3_2 | exon | 74647678 | 74647783 | 74647678 | ID=Msa0424460-mRNA-1:exon:18899;Parent=Msa0424460-mRNA-1 |
| chr3_2 | exon | 74648039 | 74648094 | 74648039 | ID=Msa0424460-mRNA-1:exon:18898;Parent=Msa0424460-mRNA-1 |
| chr3_2 | exon | 74648192 | 74648506 | 74648192 | ID=Msa0424460-mRNA-1:exon:18897;Parent=Msa0424460-mRNA-1 |
| chr3_2 | five_prime_UTR | 74648355 | 74648506 | 74648355 | ID=Msa0424460-mRNA-1:five_prime_utr;Parent=Msa0424460-mRNA-1 |
| chr3_2 | CDS | 74648192 | 74648354 | 74648192 | ID=Msa0424460-mRNA-1:cds;Parent=Msa0424460-mRNA-1 |
| chr3_2 | CDS | 74648039 | 74648094 | 74648039 | ID=Msa0424460-mRNA-1:cds;Parent=Msa0424460-mRNA-1 |
| chr3_2 | CDS | 74647678 | 74647783 | 74647678 | ID=Msa0424460-mRNA-1:cds;Parent=Msa0424460-mRNA-1 |
| chr3_2 | CDS | 74647386 | 74647540 | 74647386 | ID=Msa0424460-mRNA-1:cds;Parent=Msa0424460-mRNA-1 |
| chr3_2 | CDS | 74646895 | 74647038 | 74646895 | ID=Msa0424460-mRNA-1:cds;Parent=Msa0424460-mRNA-1 |
| chr3_2 | CDS | 74646760 | 74646795 | 74646760 | ID=Msa0424460-mRNA-1:cds;Parent=Msa0424460-mRNA-1 |
| chr3_2 | three_prime_UTR | 74646606 | 74646759 | 74646606 | ID=Msa0424460-mRNA-1:three_prime_utr;Parent=Msa0424460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
