AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1107330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1107330 MtrunA17_Chr7g0240451 93.043 115 8 0 1 115 1 115 4.15e-74 219
Msa1107330 MtrunA17_Chr7g0240451 92.857 98 7 0 113 210 15 112 6.30e-61 186
Msa1107330 MtrunA17_Chr7g0240471 84.348 115 18 0 1 115 1 115 3.33e-67 202
Msa1107330 MtrunA17_Chr7g0240471 83.673 98 16 0 113 210 15 112 8.37e-55 170
Msa1107330 MtrunA17_Chr7g0240441 74.026 77 4 1 36 112 29 89 1.96e-32 112
Msa1107330 MtrunA17_Chr7g0240441 72.152 79 6 1 134 212 29 91 5.87e-31 108
Msa1107330 MtrunA17_Chr8g0368861 43.220 118 62 3 1 114 1 117 4.98e-21 84.3
Msa1107330 MtrunA17_Chr8g0368861 47.368 95 48 2 118 211 23 116 1.67e-18 77.8
Msa1107330 MtrunA17_Chr8g0368831 42.373 118 63 3 1 114 9 125 2.32e-20 82.8
Msa1107330 MtrunA17_Chr8g0368831 46.316 95 49 2 118 211 31 124 8.60e-18 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1107330 AT5G05960.1 57.143 112 41 2 4 115 10 114 2.17e-38 129
Msa1107330 AT5G05960.1 66.667 90 29 1 121 210 23 111 6.92e-35 120
Msa1107330 AT3G53980.2 61.290 93 35 1 23 115 21 112 4.61e-38 128
Msa1107330 AT3G53980.2 60.000 90 35 1 121 210 21 109 1.21e-34 119
Msa1107330 AT3G53980.1 61.290 93 35 1 23 115 21 112 4.61e-38 128
Msa1107330 AT3G53980.1 60.000 90 35 1 121 210 21 109 1.21e-34 119
Msa1107330 AT2G37870.1 48.182 110 51 4 10 115 6 113 7.63e-24 92.0
Msa1107330 AT2G37870.1 48.000 100 48 3 114 211 14 111 5.58e-20 82.0

Find 35 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTAAAAGCTTCATTATC+AGG 0.292862 7_3:-48883976 None:intergenic
CAGCAAGGTTGCAACGTTTA+GGG 0.315042 7_3:-48884161 None:intergenic
TCAGCAAGGTTGCAACGTTT+AGG 0.342606 7_3:-48884162 None:intergenic
GGTATTGCAGTTCTTGTTGC+AGG 0.361788 7_3:+48880490 Msa1107330:CDS
AGCTTAAAAGCTTCATTGTC+TGG 0.411064 7_3:-48880559 None:intergenic
CGTCCGCACTTGTAACCAAC+GGG 0.413297 7_3:-48880772 None:intergenic
TCAAACGTTGCTAAAATGTC+TGG 0.431901 7_3:+48880694 Msa1107330:CDS
TCAAACGTTGCTAAAATGTC+TGG 0.431901 7_3:+48884111 Msa1107330:CDS
CAGCAAGGTTGCAACGCTTA+GGG 0.465106 7_3:-48880744 None:intergenic
GGATAGTAACAGCAATTTGA+GGG 0.472152 7_3:-48880723 None:intergenic
TCAGCAAGGTTGCAACGCTT+AGG 0.488806 7_3:-48880745 None:intergenic
TGTGCTCATGTTAAGAAACT+TGG 0.499941 7_3:+48884054 Msa1107330:CDS
GTGAAATTGTTGTGCTTCGT+TGG 0.500117 7_3:+48880469 Msa1107330:CDS
GGGATAGTAACAGCAATTTG+AGG 0.508534 7_3:-48880724 None:intergenic
GTCACAAAATTGTTGTGCTC+AGG 0.514410 7_3:+48880624 Msa1107330:CDS
AACCTTGCTGATCGCCCCGT+TGG 0.520067 7_3:+48880757 Msa1107330:CDS
GTTGAAAGTGCTGGTGAATG+TGG 0.539242 7_3:+48880523 Msa1107330:CDS
GTTGAAAGTGCTGGTGAATG+TGG 0.539242 7_3:+48883940 Msa1107330:CDS
AACCTTGCTGATCGTCCTGT+CGG 0.547957 7_3:+48884174 Msa1107330:CDS
AAAGTGCTGGTGAATGTGGA+AGG 0.549386 7_3:+48880527 Msa1107330:CDS
ATTCATAGAGTTGAAAGTGC+TGG 0.554882 7_3:+48880514 Msa1107330:CDS
ATTCATAGAGTTGAAAGTGC+TGG 0.554882 7_3:+48883931 Msa1107330:CDS
ACGTCCGCACTTGTAACCAA+CGG 0.581075 7_3:-48880773 None:intergenic
CGTCCGCACTTGTAACCGAC+AGG 0.586333 7_3:-48884189 None:intergenic
ATAACAGCACGAAGACAACT+TGG 0.590218 7_3:-48884084 None:intergenic
ATAACAGCACAAAGACAACT+TGG 0.604458 7_3:-48880667 None:intergenic
AGTGCTGGTGAATGTGGAAG+AGG 0.608175 7_3:+48883946 Msa1107330:CDS
TGTGCTCAGGTTAAGAAACT+CGG 0.610168 7_3:+48880637 Msa1107330:CDS
CGCCCCGTTGGTTACAAGTG+CGG 0.615128 7_3:+48880769 Msa1107330:CDS
CGTCCTGTCGGTTACAAGTG+CGG 0.623336 7_3:+48884186 Msa1107330:CDS
AGTGCTGGTGAATGTGGAAG+GGG 0.630405 7_3:+48880529 Msa1107330:CDS
AACCAACGGGGCGATCAGCA+AGG 0.631783 7_3:-48880759 None:intergenic
AAGTGCTGGTGAATGTGGAA+GGG 0.641454 7_3:+48880528 Msa1107330:CDS
AACCGACAGGACGATCAGCA+AGG 0.685728 7_3:-48884176 None:intergenic
GTCCGCACTTGTAACCAACG+GGG 0.774944 7_3:-48880771 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTAAGAAGAAAAAAAA+TGG + chr7_3:48880438-48880457 Msa1107330:exon 10.0%
!!! TTTTTTATCTTTATTTTTTC+TGG + chr7_3:48881512-48881531 Msa1107330:intron 10.0%
!! TTGATAAAAAATAAAGTTTA+TGG - chr7_3:48882477-48882496 None:intergenic 10.0%
!! TATTTAACCAAAAATAATAA+TGG + chr7_3:48883572-48883591 Msa1107330:intron 10.0%
!!! TACTTATTTGACATTTTTTT+AGG - chr7_3:48881041-48881060 None:intergenic 15.0%
!! TATATATAAGAATTTAATGG+TGG + chr7_3:48881581-48881600 Msa1107330:intron 15.0%
!! CATAGTAAATAAATAAACAT+AGG + chr7_3:48882752-48882771 Msa1107330:intron 15.0%
!!! TTTTGGTTAAATAAACATAT+TGG - chr7_3:48883565-48883584 None:intergenic 15.0%
!! CATATATTAAGTAAGAAAAA+TGG + chr7_3:48883855-48883874 Msa1107330:intron 15.0%
!! ATTAAGAAGAAAAAAAATGG+AGG + chr7_3:48880441-48880460 Msa1107330:exon 20.0%
!! TTAAGAAGAAAAAAAATGGA+GGG + chr7_3:48880442-48880461 Msa1107330:exon 20.0%
!!! TAATTATTTGTCTTTTTTCC+TGG + chr7_3:48881079-48881098 Msa1107330:intron 20.0%
!! ATTATATTTCAGTTACTACT+GGG + chr7_3:48881391-48881410 Msa1107330:intron 20.0%
!!! ATGATGTGAAAATTTGTTAA+TGG + chr7_3:48881462-48881481 Msa1107330:intron 20.0%
!! TAAAGAAGGATAATTGATAA+AGG + chr7_3:48881856-48881875 Msa1107330:intron 20.0%
!! AAAGAAGGATAATTGATAAA+GGG + chr7_3:48881857-48881876 Msa1107330:intron 20.0%
!! TATTGTAGATAGAAAAGATA+TGG + chr7_3:48882176-48882195 Msa1107330:intron 20.0%
!! AAGTTAAAAAAACTCTTGAA+AGG - chr7_3:48882892-48882911 None:intergenic 20.0%
!!! GGTTTTTTAGTGAATTTTAA+AGG + chr7_3:48883155-48883174 Msa1107330:intron 20.0%
!!! CTGGTATTTTTTTTAAAACT+AGG - chr7_3:48883242-48883261 None:intergenic 20.0%
!!! CAATACCTTTTTATCAATTA+TGG + chr7_3:48883265-48883284 Msa1107330:intron 20.0%
!! ATGAACCATAATTGATAAAA+AGG - chr7_3:48883273-48883292 None:intergenic 20.0%
!! TAAGAGGTAATCTTATAAAT+TGG - chr7_3:48883414-48883433 None:intergenic 20.0%
!! TTGTATTAATTATGCATGTT+GGG - chr7_3:48883443-48883462 None:intergenic 20.0%
!! TTTGTATTAATTATGCATGT+TGG - chr7_3:48883444-48883463 None:intergenic 20.0%
!!! ACTTTGTCCATTATTATTTT+TGG - chr7_3:48883582-48883601 None:intergenic 20.0%
!!! ACAAACTTTTTATTACTAAG+TGG + chr7_3:48883673-48883692 Msa1107330:intron 20.0%
!!! ATTTTATAGGACTAGAAATA+TGG - chr7_3:48883776-48883795 None:intergenic 20.0%
!! ATATTAAGTAAGAAAAATGG+AGG + chr7_3:48883858-48883877 Msa1107330:intron 20.0%
!! TATTAAGTAAGAAAAATGGA+GGG + chr7_3:48883859-48883878 Msa1107330:intron 20.0%
! TTGCTGAAAACAAACATAAA+TGG + chr7_3:48881177-48881196 Msa1107330:intron 25.0%
! TGCTGAAAACAAACATAAAT+GGG + chr7_3:48881178-48881197 Msa1107330:intron 25.0%
!!! AAGTGAAACTGTTTTATTCA+GGG - chr7_3:48881320-48881339 None:intergenic 25.0%
!!! AAAGTGAAACTGTTTTATTC+AGG - chr7_3:48881321-48881340 None:intergenic 25.0%
! CATTATATTTCAGTTACTAC+TGG + chr7_3:48881390-48881409 Msa1107330:intron 25.0%
!! TGAGAGAATTGATTTATGTT+TGG + chr7_3:48881722-48881741 Msa1107330:intron 25.0%
! ACTAAAATAGACATAGCTAA+AGG + chr7_3:48881825-48881844 Msa1107330:intron 25.0%
! TAAAGGAGAATTGATAAAGA+AGG + chr7_3:48881842-48881861 Msa1107330:intron 25.0%
! TAATTGATAAAGGGCAATAA+AGG + chr7_3:48881866-48881885 Msa1107330:intron 25.0%
! TAGATAGAAAAGATATGGTT+TGG + chr7_3:48882181-48882200 Msa1107330:intron 25.0%
!!! AAAAGATATGGTTTGGATTT+TGG + chr7_3:48882188-48882207 Msa1107330:intron 25.0%
! TTCTCTTTCAATCATGTTAT+TGG - chr7_3:48882293-48882312 None:intergenic 25.0%
! ATGTTTGATGTGAAAGAAAA+CGG + chr7_3:48882325-48882344 Msa1107330:intron 25.0%
! GATACTAGTACTATATATAG+TGG - chr7_3:48882568-48882587 None:intergenic 25.0%
! TTGAAGTATATAGTACCAAT+TGG - chr7_3:48882595-48882614 None:intergenic 25.0%
! TCTATATCCATATTCATCAA+TGG - chr7_3:48882711-48882730 None:intergenic 25.0%
! TCTAGATAATTATGCTTCAT+AGG + chr7_3:48882849-48882868 Msa1107330:intron 25.0%
! TTAAAAAAACTCTTGAAAGG+TGG - chr7_3:48882889-48882908 None:intergenic 25.0%
! TTCATGAAGTGTAATAAAGA+TGG + chr7_3:48882939-48882958 Msa1107330:intron 25.0%
! GTCAAAAAACCAAAAATACA+TGG + chr7_3:48883101-48883120 Msa1107330:intron 25.0%
! CATTTGATCAAGAAGTTTAA+TGG + chr7_3:48883325-48883344 Msa1107330:intron 25.0%
! ACATAATAAGTTATTGCTGT+TGG - chr7_3:48883377-48883396 None:intergenic 25.0%
! GGATAGTAAAAACAATTTGA+GGG - chr7_3:48884143-48884162 None:intergenic 25.0%
AATTAGCATATTGATCTACC+AGG - chr7_3:48881100-48881119 None:intergenic 30.0%
!! CTTTGTTGTTGTTTATAGTG+TGG + chr7_3:48881266-48881285 Msa1107330:intron 30.0%
!! ATCCACTAAAAAGTTTTGGT+AGG - chr7_3:48881363-48881382 None:intergenic 30.0%
! AAGCATCCACTAAAAAGTTT+TGG - chr7_3:48881367-48881386 None:intergenic 30.0%
!!! TATCTTTATTTTTTCTGGCG+TGG + chr7_3:48881517-48881536 Msa1107330:intron 30.0%
!!! ATCTTTATTTTTTCTGGCGT+GGG + chr7_3:48881518-48881537 Msa1107330:intron 30.0%
GGGCAATAAAGGAAAATAAT+AGG + chr7_3:48881877-48881896 Msa1107330:intron 30.0%
!! CTTCAAGGATAATTGCTTTT+GGG + chr7_3:48881970-48881989 Msa1107330:intron 30.0%
!! TTCAAGGATAATTGCTTTTG+GGG + chr7_3:48881971-48881990 Msa1107330:intron 30.0%
!!! TTTTTGGCTAGAATTGCTTT+TGG + chr7_3:48882032-48882051 Msa1107330:intron 30.0%
! TTGAATTTTATGAGCCTGTT+TGG - chr7_3:48882096-48882115 None:intergenic 30.0%
CAAACATTACATTGTTTGAG+TGG + chr7_3:48882113-48882132 Msa1107330:intron 30.0%
TGTTTGATGTGAAAGAAAAC+GGG + chr7_3:48882326-48882345 Msa1107330:intron 30.0%
ATTAAATTACACCCCTTGTT+TGG + chr7_3:48882385-48882404 Msa1107330:intron 30.0%
! TGGAAAAAGATTTGACTTTG+TGG - chr7_3:48882457-48882476 None:intergenic 30.0%
GTATATAGTACCAATTGGTA+GGG - chr7_3:48882590-48882609 None:intergenic 30.0%
AGTATATAGTACCAATTGGT+AGG - chr7_3:48882591-48882610 None:intergenic 30.0%
!!! TTTCTCTGCTTGTTTTTTCT+TGG - chr7_3:48882637-48882656 None:intergenic 30.0%
! AGATGAGATACATCAAGTTT+TGG + chr7_3:48882728-48882747 Msa1107330:intron 30.0%
ACTTAGGATAAGAAATTGAG+TGG + chr7_3:48882789-48882808 Msa1107330:intron 30.0%
AAAACAGTTGGTTAACTAAC+GGG - chr7_3:48882820-48882839 None:intergenic 30.0%
CAAAACAGTTGGTTAACTAA+CGG - chr7_3:48882821-48882840 None:intergenic 30.0%
AGAAACATGTACAAAACAGT+TGG - chr7_3:48882832-48882851 None:intergenic 30.0%
!!! TTTTAACTTGTAGCATTGTG+TGG + chr7_3:48882903-48882922 Msa1107330:intron 30.0%
!!! CATTTTTAGCTACACATTCA+TGG - chr7_3:48883036-48883055 None:intergenic 30.0%
GACTTAAGAATATATAGCGA+TGG + chr7_3:48883055-48883074 Msa1107330:intron 30.0%
! ACGTGATATCCATGTATTTT+TGG - chr7_3:48883113-48883132 None:intergenic 30.0%
TATGTACTTATGATTCTTGC+AGG - chr7_3:48883204-48883223 None:intergenic 30.0%
TAAGTACATAAACGATGCTA+AGG + chr7_3:48883214-48883233 Msa1107330:intron 30.0%
ATGGACAAAGTAAAAACTAG+AGG + chr7_3:48883591-48883610 Msa1107330:intron 30.0%
TGGACAAAGTAAAAACTAGA+GGG + chr7_3:48883592-48883611 Msa1107330:intron 30.0%
TATAGGACTAGAAATATGGT+TGG - chr7_3:48883772-48883791 None:intergenic 30.0%
! TGCATTTGATGGGATTTTAT+AGG - chr7_3:48883789-48883808 None:intergenic 30.0%
AACAATGCAATGCATTTGAT+GGG - chr7_3:48883799-48883818 None:intergenic 30.0%
CAAAGACTACAAAACAAACA+AGG - chr7_3:48883903-48883922 None:intergenic 30.0%
AGCTTAAAAGCTTCATTATC+AGG - chr7_3:48883979-48883998 None:intergenic 30.0%
GGGATAGTAAAAACAATTTG+AGG - chr7_3:48884144-48884163 None:intergenic 30.0%
! ATTCATAGAGTTGAAAGTGC+TGG + chr7_3:48880514-48880533 Msa1107330:CDS 35.0%
AGCTTAAAAGCTTCATTGTC+TGG - chr7_3:48880562-48880581 None:intergenic 35.0%
ATAACAGCACAAAGACAACT+TGG - chr7_3:48880670-48880689 None:intergenic 35.0%
TCAAACGTTGCTAAAATGTC+TGG + chr7_3:48880694-48880713 Msa1107330:CDS 35.0%
GGATAGTAACAGCAATTTGA+GGG - chr7_3:48880726-48880745 None:intergenic 35.0%
CAATAACCTCAACTCTTTCA+AGG - chr7_3:48881160-48881179 None:intergenic 35.0%
AATACAGCACAACTAAGTTG+TGG - chr7_3:48881242-48881261 None:intergenic 35.0%
! TGCCTACCAAAACTTTTTAG+TGG + chr7_3:48881358-48881377 Msa1107330:intron 35.0%
ATTTCAGTTACTACTGGGTA+TGG + chr7_3:48881396-48881415 Msa1107330:intron 35.0%
TTGTCGTTATAGTGTGTGTT+TGG + chr7_3:48881630-48881649 Msa1107330:intron 35.0%
! TTCTAGAAAAGCTAGAAGCT+AGG + chr7_3:48881939-48881958 Msa1107330:intron 35.0%
! GCTTCAAGGATAATTGCTTT+TGG + chr7_3:48881969-48881988 Msa1107330:intron 35.0%
!! TCAAGGATAATTGCTTTTGG+GGG + chr7_3:48881972-48881991 Msa1107330:intron 35.0%
!! TGAACCAAACACGTTGTTTT+TGG + chr7_3:48882016-48882035 Msa1107330:intron 35.0%
!! CACTGTAGAGAATTGCTTTT+GGG + chr7_3:48882055-48882074 Msa1107330:intron 35.0%
! GGTAATAAGTTGAACCAAAC+AGG + chr7_3:48882079-48882098 Msa1107330:intron 35.0%
TGTTTGAGTGGAATTGAACT+CGG + chr7_3:48882125-48882144 Msa1107330:intron 35.0%
!! AGATATGGTTTGGATTTTGG+AGG + chr7_3:48882191-48882210 Msa1107330:intron 35.0%
!! GATATGGTTTGGATTTTGGA+GGG + chr7_3:48882192-48882211 Msa1107330:intron 35.0%
!! ATATGGTTTGGATTTTGGAG+GGG + chr7_3:48882193-48882212 Msa1107330:intron 35.0%
TTAGTACTCGACAAGATTCA+TGG + chr7_3:48882257-48882276 Msa1107330:intron 35.0%
! GGCTTGAATTCTAGAAACTT+AGG + chr7_3:48882773-48882792 Msa1107330:intron 35.0%
TAATTATGCTTCATAGGTCG+TGG + chr7_3:48882855-48882874 Msa1107330:intron 35.0%
! GCTTAGAGTGTCAAAAGTTA+TGG - chr7_3:48882974-48882993 None:intergenic 35.0%
!! TGATAAAAAGGTATTGCAGC+TGG - chr7_3:48883261-48883280 None:intergenic 35.0%
! TATTGCTGTTGGACTATAGT+CGG - chr7_3:48883366-48883385 None:intergenic 35.0%
AAACACTGACCAATTAGTAC+TGG + chr7_3:48883712-48883731 Msa1107330:intron 35.0%
GTGCAAGATCCATTAATCTA+AGG + chr7_3:48883734-48883753 Msa1107330:intron 35.0%
CAAGATCCATTAATCTAAGG+TGG + chr7_3:48883737-48883756 Msa1107330:intron 35.0%
AGTCATCCACCTTAGATTAA+TGG - chr7_3:48883746-48883765 None:intergenic 35.0%
CAACAATGCAATGCATTTGA+TGG - chr7_3:48883800-48883819 None:intergenic 35.0%
! TGTTTTGTAGTCTTTGTTGC+AGG + chr7_3:48883907-48883926 Msa1107330:intron 35.0%
! ATTCATAGAGTTGAAAGTGC+TGG + chr7_3:48880514-48880533 Msa1107330:CDS 35.0%
TGTGCTCATGTTAAGAAACT+TGG + chr7_3:48884054-48884073 Msa1107330:CDS 35.0%
TCAAACGTTGCTAAAATGTC+TGG + chr7_3:48880694-48880713 Msa1107330:CDS 35.0%
GTGAAATTGTTGTGCTTCGT+TGG + chr7_3:48880469-48880488 Msa1107330:CDS 40.0%
GTCACAAAATTGTTGTGCTC+AGG + chr7_3:48880624-48880643 Msa1107330:CDS 40.0%
TGTGCTCAGGTTAAGAAACT+CGG + chr7_3:48880637-48880656 Msa1107330:CDS 40.0%
GGGATAGTAACAGCAATTTG+AGG - chr7_3:48880727-48880746 None:intergenic 40.0%
ACTCTTCCTTGAAAGAGTTG+AGG + chr7_3:48881151-48881170 Msa1107330:intron 40.0%
AGCTAGGATTTGTAGCTTCA+AGG + chr7_3:48881955-48881974 Msa1107330:intron 40.0%
CTAGCCAAAAACAACGTGTT+TGG - chr7_3:48882023-48882042 None:intergenic 40.0%
! GCACTGTAGAGAATTGCTTT+TGG + chr7_3:48882054-48882073 Msa1107330:intron 40.0%
!! TGTAGAGAATTGCTTTTGGG+TGG + chr7_3:48882058-48882077 Msa1107330:intron 40.0%
GAACCATTAAGCGATGTCTT+GGG + chr7_3:48882147-48882166 Msa1107330:intron 40.0%
GATGTGAAAGAAAACGGGAA+AGG + chr7_3:48882331-48882350 Msa1107330:intron 40.0%
TCTCCCTTTAAGCCAAACAA+GGG - chr7_3:48882400-48882419 None:intergenic 40.0%
TTCTCCCTTTAAGCCAAACA+AGG - chr7_3:48882401-48882420 None:intergenic 40.0%
! ATAGTGGAGCATAGTTCATG+TGG - chr7_3:48882552-48882571 None:intergenic 40.0%
GTACTAGTATCCCTACCAAT+TGG + chr7_3:48882577-48882596 Msa1107330:intron 40.0%
GTTCACATATGATTCTCAGC+TGG + chr7_3:48883134-48883153 Msa1107330:intron 40.0%
!!! TTCTTGCAGGAAGCATCTTT+TGG - chr7_3:48883191-48883210 None:intergenic 40.0%
! ACCTTTGAGAAAAAGTTCCG+CGG + chr7_3:48883502-48883521 Msa1107330:intron 40.0%
GATCTTGCACCAGTACTAAT+TGG - chr7_3:48883724-48883743 None:intergenic 40.0%
ATAACAGCACGAAGACAACT+TGG - chr7_3:48884087-48884106 None:intergenic 40.0%
GGTATTGCAGTTCTTGTTGC+AGG + chr7_3:48880490-48880509 Msa1107330:CDS 45.0%
!! GTTGAAAGTGCTGGTGAATG+TGG + chr7_3:48880523-48880542 Msa1107330:CDS 45.0%
!! AAAGTGCTGGTGAATGTGGA+AGG + chr7_3:48880527-48880546 Msa1107330:CDS 45.0%
!! AAGTGCTGGTGAATGTGGAA+GGG + chr7_3:48880528-48880547 Msa1107330:CDS 45.0%
! TCTTTTGCTGCACTTGCACA+AGG - chr7_3:48880589-48880608 None:intergenic 45.0%
GGAACCATTAAGCGATGTCT+TGG + chr7_3:48882146-48882165 Msa1107330:intron 45.0%
GAACCCAAGACATCGCTTAA+TGG - chr7_3:48882153-48882172 None:intergenic 45.0%
GAAAGAAAACGGGAAAGGAG+AGG + chr7_3:48882336-48882355 Msa1107330:intron 45.0%
! ACACCCCTTGTTTGGCTTAA+AGG + chr7_3:48882393-48882412 Msa1107330:intron 45.0%
! CACCCCTTGTTTGGCTTAAA+GGG + chr7_3:48882394-48882413 Msa1107330:intron 45.0%
CTCCCTTTAAGCCAAACAAG+GGG - chr7_3:48882399-48882418 None:intergenic 45.0%
CATGTGGTTCGTGCAATATG+TGG - chr7_3:48882536-48882555 None:intergenic 45.0%
TGGTGGGACAATTTCTGTTG+CGG - chr7_3:48882684-48882703 None:intergenic 45.0%
ATTCATCAATGGTGCCTGGT+GGG - chr7_3:48882700-48882719 None:intergenic 45.0%
TATTCATCAATGGTGCCTGG+TGG - chr7_3:48882701-48882720 None:intergenic 45.0%
CCATATTCATCAATGGTGCC+TGG - chr7_3:48882704-48882723 None:intergenic 45.0%
CCAGGCACCATTGATGAATA+TGG + chr7_3:48882701-48882720 Msa1107330:intron 45.0%
AACTCTTGAAAGGTGGAGTG+TGG - chr7_3:48882882-48882901 None:intergenic 45.0%
TGGACTATAGTCGGAGTTGT+AGG - chr7_3:48883357-48883376 None:intergenic 45.0%
GCATGTTGGGTACAGTTAAG+AGG - chr7_3:48883430-48883449 None:intergenic 45.0%
!! TCCGCGGAACTTTTTCTCAA+AGG - chr7_3:48883506-48883525 None:intergenic 45.0%
!! GTTGAAAGTGCTGGTGAATG+TGG + chr7_3:48880523-48880542 Msa1107330:CDS 45.0%
! TCTTTTGCTGCACTTGCACA+AGG - chr7_3:48880589-48880608 None:intergenic 45.0%
CAGCAAGGTTGCAACGTTTA+GGG - chr7_3:48884164-48884183 None:intergenic 45.0%
TCAGCAAGGTTGCAACGTTT+AGG - chr7_3:48884165-48884184 None:intergenic 45.0%
!! TATTATATATAAGAATTTAA+TGG + chr7_3:48881578-48881597 Msa1107330:intron 5.0%
!! AGTGCTGGTGAATGTGGAAG+GGG + chr7_3:48880529-48880548 Msa1107330:CDS 50.0%
CAGCAAGGTTGCAACGCTTA+GGG - chr7_3:48880747-48880766 None:intergenic 50.0%
TCAGCAAGGTTGCAACGCTT+AGG - chr7_3:48880748-48880767 None:intergenic 50.0%
ACGTCCGCACTTGTAACCAA+CGG - chr7_3:48880776-48880795 None:intergenic 50.0%
GGCTTAAAGGGAGAAGAGAG+TGG + chr7_3:48882406-48882425 Msa1107330:intron 50.0%
GCAACAGAAATTGTCCCACC+AGG + chr7_3:48882683-48882702 Msa1107330:intron 50.0%
AGTGAGCAACCACTTTGCTC+CGG - chr7_3:48883537-48883556 None:intergenic 50.0%
!! AGTGCTGGTGAATGTGGAAG+AGG + chr7_3:48880529-48880548 Msa1107330:CDS 50.0%
AACCTTGCTGATCGTCCTGT+CGG + chr7_3:48884174-48884193 Msa1107330:CDS 50.0%
GTCCGCACTTGTAACCAACG+GGG - chr7_3:48880774-48880793 None:intergenic 55.0%
CGTCCGCACTTGTAACCAAC+GGG - chr7_3:48880775-48880794 None:intergenic 55.0%
TGTTGCGGTTGCTGTGCTGT+TGG - chr7_3:48882669-48882688 None:intergenic 55.0%
ACGAATGTGCCGGAGCAAAG+TGG + chr7_3:48883525-48883544 Msa1107330:intron 55.0%
AACCGACAGGACGATCAGCA+AGG - chr7_3:48884179-48884198 None:intergenic 55.0%
! CGTCCTGTCGGTTACAAGTG+CGG + chr7_3:48884186-48884205 Msa1107330:CDS 55.0%
AACCTTGCTGATCGCCCCGT+TGG + chr7_3:48880757-48880776 Msa1107330:CDS 60.0%
AACCAACGGGGCGATCAGCA+AGG - chr7_3:48880762-48880781 None:intergenic 60.0%
! CGCCCCGTTGGTTACAAGTG+CGG + chr7_3:48880769-48880788 Msa1107330:CDS 60.0%
TCTGGCGTGGGTGAAGCTCT+TGG + chr7_3:48881530-48881549 Msa1107330:intron 60.0%
AGTTCCGCGGACGAATGTGC+CGG + chr7_3:48883515-48883534 Msa1107330:intron 60.0%
CGTCCGCACTTGTAACCGAC+AGG - chr7_3:48884192-48884211 None:intergenic 60.0%
TGCTCCGGCACATTCGTCCG+CGG - chr7_3:48883522-48883541 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 48880415 48884218 48880415 ID=Msa1107330;Name=Msa1107330
chr7_3 mRNA 48880415 48884218 48880415 ID=Msa1107330-mRNA-1;Parent=Msa1107330;Name=Msa1107330-mRNA-1;_AED=0.33;_eAED=0.33;_QI=42|0|0.5|1|1|1|2|0|212
chr7_3 exon 48880415 48880793 48880415 ID=Msa1107330-mRNA-1:exon:9950;Parent=Msa1107330-mRNA-1
chr7_3 exon 48883917 48884218 48883917 ID=Msa1107330-mRNA-1:exon:9951;Parent=Msa1107330-mRNA-1
chr7_3 five_prime_UTR 48880415 48880456 48880415 ID=Msa1107330-mRNA-1:five_prime_utr;Parent=Msa1107330-mRNA-1
chr7_3 CDS 48880457 48880793 48880457 ID=Msa1107330-mRNA-1:cds;Parent=Msa1107330-mRNA-1
chr7_3 CDS 48883917 48884218 48883917 ID=Msa1107330-mRNA-1:cds;Parent=Msa1107330-mRNA-1
Gene Sequence

>Msa1107330

ATGGAGGGTCTTGTGAAATTGTTGTGCTTCGTTGGTATTGCAGTTCTTGTTGCAGGAATTCATAGAGTTGAAAGTGCTGGTGAATGTGGAAGGGGTACTACACCAGACAATGAAGCTTTTAAGCTACTTCCTTGTGCAAGTGCAGCAAAAGATGAAAATGCTAGTGTGTCACAAAATTGTTGTGCTCAGGTTAAGAAACTCGGTCAGAATCCAAGTTGTCTTTGTGCTGTTATGCTTTCAAACGTTGCTAAAATGTCTGGTGCTAACCCTCAAATTGCTGTTACTATCCCTAAGCGTTGCAACCTTGCTGATCGCCCCGTTGGTTACAAGTGCGGACTCTTTGTTGCAGGAATTCATAGAGTTGAAAGTGCTGGTGAATGTGGAAGAGGTACTACACCTGATAATGAAGCTTTTAAGCTTATTCCTTGTGCAAGTGCAGCAAAAGATGAAAATGCTAGTGTGTCACAAAGTTGTTGTGCTCATGTTAAGAAACTTGGTCAGAATCCAAGTTGTCTTCGTGCTGTTATGCTTTCAAACGTTGCTAAAATGTCTGGTGCTAACCCTCAAATTGTTTTTACTATCCCTAAACGTTGCAACCTTGCTGATCGTCCTGTCGGTTACAAGTGCGGACGTAAGTAA

Protein sequence

>Msa1107330

MEGLVKLLCFVGIAVLVAGIHRVESAGECGRGTTPDNEAFKLLPCASAAKDENASVSQNCCAQVKKLGQNPSCLCAVMLSNVAKMSGANPQIAVTIPKRCNLADRPVGYKCGLFVAGIHRVESAGECGRGTTPDNEAFKLIPCASAAKDENASVSQSCCAHVKKLGQNPSCLRAVMLSNVAKMSGANPQIVFTIPKRCNLADRPVGYKCGRK*