Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0471510 | XP_003602163.1 | 95.045 | 222 | 8 | 1 | 1 | 219 | 1 | 222 | 4.82e-150 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0471510 | sp|Q6NLQ3|GLTP2_ARATH | 50.893 | 224 | 102 | 4 | 1 | 218 | 1 | 222 | 1.44e-69 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0471510 | G7J670 | 95.045 | 222 | 8 | 1 | 1 | 219 | 1 | 222 | 2.30e-150 | 426 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0424460 | Msa0471510 | 0.934489 | 3.730871e-96 | -8.615850e-47 |
| Msa0471360 | Msa0471510 | 0.863303 | 2.741380e-64 | -8.615850e-47 |
| Msa0471510 | Msa0838210 | 0.802480 | 5.500187e-49 | -8.615850e-47 |
| Msa0471510 | Msa1047300 | 0.815874 | 7.391111e-52 | -8.615850e-47 |
| Msa0471510 | Msa1047340 | 0.815461 | 9.136242e-52 | -8.615850e-47 |
| Msa0471510 | Msa1094810 | 0.805646 | 1.207563e-49 | -8.615850e-47 |
| Msa0471510 | Msa1100330 | 0.801931 | 7.134802e-49 | -8.615850e-47 |
| Msa0471510 | Msa1150760 | 0.819244 | 1.286123e-52 | -8.615850e-47 |
| Msa0471510 | Msa1352600 | -0.807928 | 3.977399e-50 | -8.615850e-47 |
| Msa0471510 | Msa1384130 | 0.801203 | 1.005867e-48 | -8.615850e-47 |
| Msa0303900 | Msa0471510 | 0.803859 | 2.850204e-49 | -8.615850e-47 |
| Msa0333770 | Msa0471510 | 0.802599 | 5.196881e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0471510 | MtrunA17_Chr3g0126121 | 95.045 | 222 | 8 | 1 | 1 | 219 | 1 | 222 | 4.43e-154 | 426 |
| Msa0471510 | MtrunA17_Chr1g0159211 | 66.210 | 219 | 69 | 3 | 5 | 219 | 6 | 223 | 1.22e-100 | 291 |
| Msa0471510 | MtrunA17_Chr1g0159221 | 64.286 | 224 | 74 | 3 | 1 | 219 | 1 | 223 | 3.76e-99 | 287 |
| Msa0471510 | MtrunA17_Chr1g0187451 | 35.829 | 187 | 112 | 3 | 36 | 219 | 21 | 202 | 7.18e-34 | 120 |
| Msa0471510 | MtrunA17_Chr1g0166501 | 36.898 | 187 | 110 | 4 | 36 | 219 | 21 | 202 | 1.14e-31 | 114 |
| Msa0471510 | MtrunA17_Chr1g0187431 | 38.000 | 100 | 58 | 2 | 61 | 157 | 1 | 99 | 4.85e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0471510 | AT1G21360.1 | 50.893 | 224 | 102 | 4 | 1 | 218 | 1 | 222 | 1.47e-70 | 215 |
| Msa0471510 | AT3G21260.3 | 50.442 | 226 | 103 | 3 | 1 | 218 | 8 | 232 | 7.84e-64 | 198 |
| Msa0471510 | AT1G21360.3 | 51.497 | 167 | 73 | 4 | 1 | 161 | 1 | 165 | 6.63e-50 | 161 |
| Msa0471510 | AT1G21360.2 | 50.932 | 161 | 75 | 2 | 61 | 218 | 1 | 160 | 1.07e-47 | 154 |
| Msa0471510 | AT3G21260.2 | 50.000 | 148 | 70 | 2 | 74 | 218 | 2 | 148 | 8.79e-38 | 129 |
| Msa0471510 | AT3G21260.1 | 49.306 | 144 | 69 | 2 | 78 | 218 | 1 | 143 | 1.01e-35 | 123 |
| Msa0471510 | AT2G33470.2 | 37.838 | 185 | 103 | 5 | 40 | 219 | 25 | 202 | 2.27e-30 | 111 |
| Msa0471510 | AT2G33470.1 | 37.838 | 185 | 103 | 5 | 40 | 219 | 25 | 202 | 2.27e-30 | 111 |
Find 50 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGATTGTTTCAAATATTT+TGG | 0.115348 | 3_3:+73825132 | None:intergenic |
| CCCCTTAACCAATTCAAATT+TGG | 0.141878 | 3_3:-73824423 | Msa0471510:CDS |
| ATTTGGTTACCTTAATATTC+TGG | 0.236559 | 3_3:+73824717 | None:intergenic |
| TAAATAAGCTTGGTGAGTTT+TGG | 0.262198 | 3_3:-73825077 | Msa0471510:five_prime_UTR |
| CCAGCCTCATGATCTTCTTC+AGG | 0.290427 | 3_3:+73824939 | None:intergenic |
| CACCAAATTTGAATTGGTTA+AGG | 0.309265 | 3_3:+73824421 | None:intergenic |
| TACATGGTTCTACAAGTTCT+TGG | 0.339211 | 3_3:-73824879 | Msa0471510:intron |
| AGTGTATACTGTATATAGTT+TGG | 0.344386 | 3_3:-73823391 | Msa0471510:three_prime_UTR |
| ACCAAATTTGAATTGGTTAA+GGG | 0.356315 | 3_3:+73824422 | None:intergenic |
| TATCTCCACCAAATTTGAAT+TGG | 0.358963 | 3_3:+73824415 | None:intergenic |
| AGACATTCACCAGAATATTA+AGG | 0.371673 | 3_3:-73824726 | Msa0471510:intron |
| AAAGATAGGAAAGGCTTTGT+TGG | 0.395007 | 3_3:+73824906 | None:intergenic |
| GAACCATGTAACATAAAGAT+AGG | 0.421906 | 3_3:+73824892 | None:intergenic |
| TTTGTATCAGAGAAAGTATA+AGG | 0.423428 | 3_3:-73825046 | Msa0471510:five_prime_UTR |
| CTTTGAAACCATGGCATGGA+TGG | 0.431560 | 3_3:-73824096 | Msa0471510:CDS |
| CGAAGACTGTGACACCCTAA+TGG | 0.438068 | 3_3:-73823646 | Msa0471510:CDS |
| AAGATAGGAAAGGCTTTGTT+GGG | 0.447613 | 3_3:+73824907 | None:intergenic |
| TTTCCTATCTTTATGTTACA+TGG | 0.447670 | 3_3:-73824895 | Msa0471510:CDS |
| TGTCTCAAAACAGCCATTGT+TGG | 0.448554 | 3_3:+73824749 | None:intergenic |
| CTTAACCAATTCAAATTTGG+TGG | 0.455065 | 3_3:-73824420 | Msa0471510:CDS |
| CGTGCCACTCTGCAGATCCC+TGG | 0.476537 | 3_3:-73824206 | Msa0471510:CDS |
| ACAACGCCGATGTGAAATCC+AGG | 0.494440 | 3_3:+73824188 | None:intergenic |
| GTAATTTACATGAAAACAGC+AGG | 0.497591 | 3_3:+73823360 | None:intergenic |
| CCAAATTTGAATTGGTTAAG+GGG | 0.508657 | 3_3:+73824423 | None:intergenic |
| AGAAAGTGTATAACTTGGAC+AGG | 0.511125 | 3_3:-73823464 | Msa0471510:CDS |
| GAAACAATTAATAATTGGCA+TGG | 0.513609 | 3_3:-73825185 | None:intergenic |
| TTTGCAGAAAGTGTATAACT+TGG | 0.513854 | 3_3:-73823469 | Msa0471510:intron |
| CAATGGATATCCTCAAGAAA+AGG | 0.520025 | 3_3:+73823591 | None:intergenic |
| AAAGTATAAGGAAAATGAAG+AGG | 0.529810 | 3_3:-73825034 | Msa0471510:exon |
| AAGCACTGAAAGCTCTTCAA+TGG | 0.530059 | 3_3:+73824974 | None:intergenic |
| GATTGTCTTGCAGATAAGGT+AGG | 0.536852 | 3_3:-73824773 | Msa0471510:intron |
| CTTGCAACTTTGCATCCAGC+TGG | 0.542395 | 3_3:-73823292 | None:intergenic |
| ATTGTCTTGCAGATAAGGTA+GGG | 0.565172 | 3_3:-73824772 | Msa0471510:intron |
| AACGCAAAGAAGAGAGTTAG+CGG | 0.567490 | 3_3:-73824368 | Msa0471510:CDS |
| CCTGAAGAAGATCATGAGGC+TGG | 0.568689 | 3_3:-73824939 | Msa0471510:CDS |
| ATGATGCAACTTTGAAACCA+TGG | 0.590512 | 3_3:-73824105 | Msa0471510:CDS |
| TTACATGAAAACAGCAGGGG+AGG | 0.599584 | 3_3:+73823365 | None:intergenic |
| GATGCAATCCATCCATGCCA+TGG | 0.623186 | 3_3:+73824088 | None:intergenic |
| TCAATCTTACTAGAATACAA+TGG | 0.627880 | 3_3:+73823574 | None:intergenic |
| TTCAAGTCAGAAACTAGCAA+AGG | 0.631092 | 3_3:-73824392 | Msa0471510:CDS |
| ATGTAACATAAAGATAGGAA+AGG | 0.631348 | 3_3:+73824897 | None:intergenic |
| AAAAGAGAGAGAAACTCACA+AGG | 0.634507 | 3_3:+73825160 | None:intergenic |
| GCAACTTTGAAACCATGGCA+TGG | 0.637985 | 3_3:-73824100 | Msa0471510:CDS |
| CAGATCCCTGGATTTCACAT+CGG | 0.644246 | 3_3:-73824194 | Msa0471510:CDS |
| TAATTTACATGAAAACAGCA+GGG | 0.653783 | 3_3:+73823361 | None:intergenic |
| CAAACCTGAAGAAGATCATG+AGG | 0.654696 | 3_3:-73824943 | Msa0471510:CDS |
| CAACGCCGATGTGAAATCCA+GGG | 0.665147 | 3_3:+73824189 | None:intergenic |
| AGATAAGGTAGGGCCAACAA+TGG | 0.678454 | 3_3:-73824762 | Msa0471510:CDS |
| AATTTACATGAAAACAGCAG+GGG | 0.694888 | 3_3:+73823362 | None:intergenic |
| AAATCCAGGGATCTGCAGAG+TGG | 0.716711 | 3_3:+73824202 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATAAATATTCATC+AGG | + | chr3_3:73824981-73825000 | None:intergenic | 10.0% |
| !! | AAAATAAATAAATATTCATC+AGG | + | chr3_3:73824981-73825000 | None:intergenic | 10.0% |
| !! | TTTCAAGAAAAAATAAATTG+TGG | - | chr3_3:73824173-73824192 | Msa0471510:CDS | 15.0% |
| !! | TTTCAAGAAAAAATAAATTG+TGG | - | chr3_3:73824173-73824192 | Msa0471510:CDS | 15.0% |
| !!! | GTTGATTGTTTCAAATATTT+TGG | + | chr3_3:73823338-73823357 | None:intergenic | 20.0% |
| !!! | ATTTTGCTTATAAATAAGCT+TGG | - | chr3_3:73823380-73823399 | Msa0471510:three_prime_UTR | 20.0% |
| !! | AAACATACTTAAAATTTGTC+TGG | + | chr3_3:73823664-73823683 | None:intergenic | 20.0% |
| !! | CAACAAAAAACTTATTCATA+TGG | + | chr3_3:73824221-73824240 | None:intergenic | 20.0% |
| !!! | GTTGATTGTTTCAAATATTT+TGG | + | chr3_3:73823338-73823357 | None:intergenic | 20.0% |
| !!! | ATTTTGCTTATAAATAAGCT+TGG | - | chr3_3:73823380-73823399 | Msa0471510:three_prime_UTR | 20.0% |
| !! | AAACATACTTAAAATTTGTC+TGG | + | chr3_3:73823664-73823683 | None:intergenic | 20.0% |
| !! | CAACAAAAAACTTATTCATA+TGG | + | chr3_3:73824221-73824240 | None:intergenic | 20.0% |
| !! | TTTGTATCAGAGAAAGTATA+AGG | - | chr3_3:73823421-73823440 | Msa0471510:three_prime_UTR | 25.0% |
| ! | AAAGTATAAGGAAAATGAAG+AGG | - | chr3_3:73823433-73823452 | Msa0471510:exon | 25.0% |
| ! | ATGTAACATAAAGATAGGAA+AGG | + | chr3_3:73823573-73823592 | None:intergenic | 25.0% |
| ! | TTTCCTATCTTTATGTTACA+TGG | - | chr3_3:73823572-73823591 | Msa0471510:intron | 25.0% |
| ! | ATTTGGTTACCTTAATATTC+TGG | + | chr3_3:73823753-73823772 | None:intergenic | 25.0% |
| ! | TCAAATTATTACATGTGTCA+AGG | + | chr3_3:73823803-73823822 | None:intergenic | 25.0% |
| ! | ACTATTAGTTAGTTACACAT+TGG | - | chr3_3:73823932-73823951 | Msa0471510:intron | 25.0% |
| ! | ACCAAATTTGAATTGGTTAA+GGG | + | chr3_3:73824048-73824067 | None:intergenic | 25.0% |
| ! | AAAAGACCCTAAAAAGAATA+TGG | - | chr3_3:73824318-73824337 | Msa0471510:intron | 25.0% |
| !!! | TTTTGGTAACTATTGAAAAG+TGG | + | chr3_3:73824448-73824467 | None:intergenic | 25.0% |
| !! | CAATGTCACAATTTCAATTT+TGG | + | chr3_3:73824465-73824484 | None:intergenic | 25.0% |
| ! | ACAATGTACAACTTGTATTA+CGG | + | chr3_3:73824569-73824588 | None:intergenic | 25.0% |
| ! | TAAATCCTAAACTCGAAATA+AGG | - | chr3_3:73824588-73824607 | Msa0471510:intron | 25.0% |
| ! | ACTAACAGAATTAATATTGC+AGG | - | chr3_3:73824740-73824759 | Msa0471510:CDS | 25.0% |
| !!! | AATCTGCATTTTTTCCATTA+GGG | + | chr3_3:73824838-73824857 | None:intergenic | 25.0% |
| !!! | AAATCTGCATTTTTTCCATT+AGG | + | chr3_3:73824839-73824858 | None:intergenic | 25.0% |
| ! | TCAATCTTACTAGAATACAA+TGG | + | chr3_3:73824896-73824915 | None:intergenic | 25.0% |
| ! | AGTGTATACTGTATATAGTT+TGG | - | chr3_3:73825076-73825095 | Msa0471510:five_prime_UTR | 25.0% |
| ! | TAATTTACATGAAAACAGCA+GGG | + | chr3_3:73825109-73825128 | None:intergenic | 25.0% |
| !! | TTTGTATCAGAGAAAGTATA+AGG | - | chr3_3:73823421-73823440 | Msa0471510:three_prime_UTR | 25.0% |
| ! | AAAGTATAAGGAAAATGAAG+AGG | - | chr3_3:73823433-73823452 | Msa0471510:exon | 25.0% |
| ! | ATGTAACATAAAGATAGGAA+AGG | + | chr3_3:73823573-73823592 | None:intergenic | 25.0% |
| ! | TTTCCTATCTTTATGTTACA+TGG | - | chr3_3:73823572-73823591 | Msa0471510:intron | 25.0% |
| ! | ATTTGGTTACCTTAATATTC+TGG | + | chr3_3:73823753-73823772 | None:intergenic | 25.0% |
| ! | TCAAATTATTACATGTGTCA+AGG | + | chr3_3:73823803-73823822 | None:intergenic | 25.0% |
| ! | ACTATTAGTTAGTTACACAT+TGG | - | chr3_3:73823932-73823951 | Msa0471510:intron | 25.0% |
| ! | ACCAAATTTGAATTGGTTAA+GGG | + | chr3_3:73824048-73824067 | None:intergenic | 25.0% |
| ! | AAAAGACCCTAAAAAGAATA+TGG | - | chr3_3:73824318-73824337 | Msa0471510:intron | 25.0% |
| !!! | TTTTGGTAACTATTGAAAAG+TGG | + | chr3_3:73824448-73824467 | None:intergenic | 25.0% |
| !! | CAATGTCACAATTTCAATTT+TGG | + | chr3_3:73824465-73824484 | None:intergenic | 25.0% |
| ! | ACAATGTACAACTTGTATTA+CGG | + | chr3_3:73824569-73824588 | None:intergenic | 25.0% |
| ! | TAAATCCTAAACTCGAAATA+AGG | - | chr3_3:73824588-73824607 | Msa0471510:intron | 25.0% |
| ! | ACTAACAGAATTAATATTGC+AGG | - | chr3_3:73824740-73824759 | Msa0471510:CDS | 25.0% |
| !!! | AATCTGCATTTTTTCCATTA+GGG | + | chr3_3:73824838-73824857 | None:intergenic | 25.0% |
| !!! | AAATCTGCATTTTTTCCATT+AGG | + | chr3_3:73824839-73824858 | None:intergenic | 25.0% |
| ! | TCAATCTTACTAGAATACAA+TGG | + | chr3_3:73824896-73824915 | None:intergenic | 25.0% |
| ! | AGTGTATACTGTATATAGTT+TGG | - | chr3_3:73825076-73825095 | Msa0471510:five_prime_UTR | 25.0% |
| ! | TAATTTACATGAAAACAGCA+GGG | + | chr3_3:73825109-73825128 | None:intergenic | 25.0% |
| !! | TAAATAAGCTTGGTGAGTTT+TGG | - | chr3_3:73823390-73823409 | Msa0471510:three_prime_UTR | 30.0% |
| GAACCATGTAACATAAAGAT+AGG | + | chr3_3:73823578-73823597 | None:intergenic | 30.0% | |
| AGACATTCACCAGAATATTA+AGG | - | chr3_3:73823741-73823760 | Msa0471510:intron | 30.0% | |
| CCAAATTTGAATTGGTTAAG+GGG | + | chr3_3:73824047-73824066 | None:intergenic | 30.0% | |
| CACCAAATTTGAATTGGTTA+AGG | + | chr3_3:73824049-73824068 | None:intergenic | 30.0% | |
| CTTAACCAATTCAAATTTGG+TGG | - | chr3_3:73824047-73824066 | Msa0471510:intron | 30.0% | |
| TATCTCCACCAAATTTGAAT+TGG | + | chr3_3:73824055-73824074 | None:intergenic | 30.0% | |
| ! | CTTGCTCCATATTCTTTTTA+GGG | + | chr3_3:73824327-73824346 | None:intergenic | 30.0% |
| ATTGAAAAGTGGAAGAAAAG+AGG | + | chr3_3:73824437-73824456 | None:intergenic | 30.0% | |
| GCTCATAGTTACTAATAAGT+GGG | - | chr3_3:73824499-73824518 | Msa0471510:intron | 30.0% | |
| AATTTCGTTACCAATCATTG+TGG | - | chr3_3:73824655-73824674 | Msa0471510:intron | 30.0% | |
| AAACAATGAACCACAATGAT+TGG | + | chr3_3:73824668-73824687 | None:intergenic | 30.0% | |
| ! | TAACTTTACTCTTTTGAACC+CGG | - | chr3_3:73824699-73824718 | Msa0471510:intron | 30.0% |
| AACAGAATTAATATTGCAGG+TGG | - | chr3_3:73824743-73824762 | Msa0471510:CDS | 30.0% | |
| ! | TCCATGAAAGTTTTTGTATC+AGG | + | chr3_3:73824783-73824802 | None:intergenic | 30.0% |
| ! | TTTGCAGAAAGTGTATAACT+TGG | - | chr3_3:73824998-73825017 | Msa0471510:CDS | 30.0% |
| AATTTACATGAAAACAGCAG+GGG | + | chr3_3:73825108-73825127 | None:intergenic | 30.0% | |
| GTAATTTACATGAAAACAGC+AGG | + | chr3_3:73825110-73825129 | None:intergenic | 30.0% | |
| !! | TAAATAAGCTTGGTGAGTTT+TGG | - | chr3_3:73823390-73823409 | Msa0471510:three_prime_UTR | 30.0% |
| GAACCATGTAACATAAAGAT+AGG | + | chr3_3:73823578-73823597 | None:intergenic | 30.0% | |
| AGACATTCACCAGAATATTA+AGG | - | chr3_3:73823741-73823760 | Msa0471510:intron | 30.0% | |
| CCAAATTTGAATTGGTTAAG+GGG | + | chr3_3:73824047-73824066 | None:intergenic | 30.0% | |
| CACCAAATTTGAATTGGTTA+AGG | + | chr3_3:73824049-73824068 | None:intergenic | 30.0% | |
| CTTAACCAATTCAAATTTGG+TGG | - | chr3_3:73824047-73824066 | Msa0471510:intron | 30.0% | |
| TATCTCCACCAAATTTGAAT+TGG | + | chr3_3:73824055-73824074 | None:intergenic | 30.0% | |
| ! | CTTGCTCCATATTCTTTTTA+GGG | + | chr3_3:73824327-73824346 | None:intergenic | 30.0% |
| ATTGAAAAGTGGAAGAAAAG+AGG | + | chr3_3:73824437-73824456 | None:intergenic | 30.0% | |
| GCTCATAGTTACTAATAAGT+GGG | - | chr3_3:73824499-73824518 | Msa0471510:intron | 30.0% | |
| AATTTCGTTACCAATCATTG+TGG | - | chr3_3:73824655-73824674 | Msa0471510:intron | 30.0% | |
| AAACAATGAACCACAATGAT+TGG | + | chr3_3:73824668-73824687 | None:intergenic | 30.0% | |
| ! | TAACTTTACTCTTTTGAACC+CGG | - | chr3_3:73824699-73824718 | Msa0471510:intron | 30.0% |
| AACAGAATTAATATTGCAGG+TGG | - | chr3_3:73824743-73824762 | Msa0471510:CDS | 30.0% | |
| ! | TCCATGAAAGTTTTTGTATC+AGG | + | chr3_3:73824783-73824802 | None:intergenic | 30.0% |
| ! | TTTGCAGAAAGTGTATAACT+TGG | - | chr3_3:73824998-73825017 | Msa0471510:CDS | 30.0% |
| AATTTACATGAAAACAGCAG+GGG | + | chr3_3:73825108-73825127 | None:intergenic | 30.0% | |
| GTAATTTACATGAAAACAGC+AGG | + | chr3_3:73825110-73825129 | None:intergenic | 30.0% | |
| AAAAGAGAGAGAAACTCACA+AGG | + | chr3_3:73823310-73823329 | None:intergenic | 35.0% | |
| !! | AAGATAGGAAAGGCTTTGTT+GGG | + | chr3_3:73823563-73823582 | None:intergenic | 35.0% |
| ! | AAAGATAGGAAAGGCTTTGT+TGG | + | chr3_3:73823564-73823583 | None:intergenic | 35.0% |
| ! | TACATGGTTCTACAAGTTCT+TGG | - | chr3_3:73823588-73823607 | Msa0471510:CDS | 35.0% |
| GATTGATTGTCTTGCAGATA+AGG | - | chr3_3:73823690-73823709 | Msa0471510:CDS | 35.0% | |
| ATTGTCTTGCAGATAAGGTA+GGG | - | chr3_3:73823695-73823714 | Msa0471510:CDS | 35.0% | |
| CCCCTTAACCAATTCAAATT+TGG | - | chr3_3:73824044-73824063 | Msa0471510:intron | 35.0% | |
| TTCAAGTCAGAAACTAGCAA+AGG | - | chr3_3:73824075-73824094 | Msa0471510:CDS | 35.0% | |
| ! | GCTTGCTCCATATTCTTTTT+AGG | + | chr3_3:73824328-73824347 | None:intergenic | 35.0% |
| !! | ATGATGCAACTTTGAAACCA+TGG | - | chr3_3:73824362-73824381 | Msa0471510:intron | 35.0% |
| TGGAAGAAAAGAGGAAGAAA+TGG | + | chr3_3:73824428-73824447 | None:intergenic | 35.0% | |
| TGACATTGAACTGTTGAGTA+TGG | - | chr3_3:73824477-73824496 | Msa0471510:intron | 35.0% | |
| GGCTCATAGTTACTAATAAG+TGG | - | chr3_3:73824498-73824517 | Msa0471510:intron | 35.0% | |
| ! | AACTTTACTCTTTTGAACCC+GGG | - | chr3_3:73824700-73824719 | Msa0471510:intron | 35.0% |
| GCCTGATACAAAAACTTTCA+TGG | - | chr3_3:73824779-73824798 | Msa0471510:intron | 35.0% | |
| CAATGGATATCCTCAAGAAA+AGG | + | chr3_3:73824879-73824898 | None:intergenic | 35.0% | |
| CATCAATTGTTCATGCTCAT+TGG | - | chr3_3:73824936-73824955 | Msa0471510:CDS | 35.0% | |
| TCATCAGGTAAGTATATGAC+AGG | + | chr3_3:73824966-73824985 | None:intergenic | 35.0% | |
| ! | AGAAAGTGTATAACTTGGAC+AGG | - | chr3_3:73825003-73825022 | Msa0471510:CDS | 35.0% |
| AAAAGAGAGAGAAACTCACA+AGG | + | chr3_3:73823310-73823329 | None:intergenic | 35.0% | |
| !! | AAGATAGGAAAGGCTTTGTT+GGG | + | chr3_3:73823563-73823582 | None:intergenic | 35.0% |
| ! | AAAGATAGGAAAGGCTTTGT+TGG | + | chr3_3:73823564-73823583 | None:intergenic | 35.0% |
| ! | TACATGGTTCTACAAGTTCT+TGG | - | chr3_3:73823588-73823607 | Msa0471510:CDS | 35.0% |
| GATTGATTGTCTTGCAGATA+AGG | - | chr3_3:73823690-73823709 | Msa0471510:CDS | 35.0% | |
| ATTGTCTTGCAGATAAGGTA+GGG | - | chr3_3:73823695-73823714 | Msa0471510:CDS | 35.0% | |
| CCCCTTAACCAATTCAAATT+TGG | - | chr3_3:73824044-73824063 | Msa0471510:intron | 35.0% | |
| TTCAAGTCAGAAACTAGCAA+AGG | - | chr3_3:73824075-73824094 | Msa0471510:CDS | 35.0% | |
| ! | GCTTGCTCCATATTCTTTTT+AGG | + | chr3_3:73824328-73824347 | None:intergenic | 35.0% |
| !! | ATGATGCAACTTTGAAACCA+TGG | - | chr3_3:73824362-73824381 | Msa0471510:intron | 35.0% |
| TGGAAGAAAAGAGGAAGAAA+TGG | + | chr3_3:73824428-73824447 | None:intergenic | 35.0% | |
| TGACATTGAACTGTTGAGTA+TGG | - | chr3_3:73824477-73824496 | Msa0471510:intron | 35.0% | |
| GGCTCATAGTTACTAATAAG+TGG | - | chr3_3:73824498-73824517 | Msa0471510:intron | 35.0% | |
| ! | AACTTTACTCTTTTGAACCC+GGG | - | chr3_3:73824700-73824719 | Msa0471510:intron | 35.0% |
| GCCTGATACAAAAACTTTCA+TGG | - | chr3_3:73824779-73824798 | Msa0471510:intron | 35.0% | |
| CAATGGATATCCTCAAGAAA+AGG | + | chr3_3:73824879-73824898 | None:intergenic | 35.0% | |
| CATCAATTGTTCATGCTCAT+TGG | - | chr3_3:73824936-73824955 | Msa0471510:CDS | 35.0% | |
| TCATCAGGTAAGTATATGAC+AGG | + | chr3_3:73824966-73824985 | None:intergenic | 35.0% | |
| ! | AGAAAGTGTATAACTTGGAC+AGG | - | chr3_3:73825003-73825022 | Msa0471510:CDS | 35.0% |
| !! | AAGCACTGAAAGCTCTTCAA+TGG | + | chr3_3:73823496-73823515 | None:intergenic | 40.0% |
| CAAACCTGAAGAAGATCATG+AGG | - | chr3_3:73823524-73823543 | Msa0471510:intron | 40.0% | |
| GATTGTCTTGCAGATAAGGT+AGG | - | chr3_3:73823694-73823713 | Msa0471510:CDS | 40.0% | |
| TGTCTCAAAACAGCCATTGT+TGG | + | chr3_3:73823721-73823740 | None:intergenic | 40.0% | |
| GTCATGTGTGTGTGAGTATT+TGG | + | chr3_3:73823770-73823789 | None:intergenic | 40.0% | |
| ! | TATGTGTCATTGCATTGCAG+AGG | - | chr3_3:73823998-73824017 | Msa0471510:intron | 40.0% |
| AACGCAAAGAAGAGAGTTAG+CGG | - | chr3_3:73824099-73824118 | Msa0471510:CDS | 40.0% | |
| ! | AATCCTTTGTTTGGCTCACT+AGG | - | chr3_3:73824127-73824146 | Msa0471510:CDS | 40.0% |
| CCTGATTACAACATTACCTC+TGG | + | chr3_3:73824545-73824564 | None:intergenic | 40.0% | |
| CCAGAGGTAATGTTGTAATC+AGG | - | chr3_3:73824542-73824561 | Msa0471510:intron | 40.0% | |
| !! | CAGCACCTTATTTCGAGTTT+AGG | + | chr3_3:73824596-73824615 | None:intergenic | 40.0% |
| TTCATGTTCAAATCGCAACC+CGG | + | chr3_3:73824721-73824740 | None:intergenic | 40.0% | |
| ! | AGTCTTCGTCTTTTTCTCTG+AGG | + | chr3_3:73824809-73824828 | None:intergenic | 40.0% |
| !! | AAGCACTGAAAGCTCTTCAA+TGG | + | chr3_3:73823496-73823515 | None:intergenic | 40.0% |
| CAAACCTGAAGAAGATCATG+AGG | - | chr3_3:73823524-73823543 | Msa0471510:intron | 40.0% | |
| GATTGTCTTGCAGATAAGGT+AGG | - | chr3_3:73823694-73823713 | Msa0471510:CDS | 40.0% | |
| TGTCTCAAAACAGCCATTGT+TGG | + | chr3_3:73823721-73823740 | None:intergenic | 40.0% | |
| GTCATGTGTGTGTGAGTATT+TGG | + | chr3_3:73823770-73823789 | None:intergenic | 40.0% | |
| ! | TATGTGTCATTGCATTGCAG+AGG | - | chr3_3:73823998-73824017 | Msa0471510:intron | 40.0% |
| AACGCAAAGAAGAGAGTTAG+CGG | - | chr3_3:73824099-73824118 | Msa0471510:CDS | 40.0% | |
| ! | AATCCTTTGTTTGGCTCACT+AGG | - | chr3_3:73824127-73824146 | Msa0471510:CDS | 40.0% |
| CCTGATTACAACATTACCTC+TGG | + | chr3_3:73824545-73824564 | None:intergenic | 40.0% | |
| CCAGAGGTAATGTTGTAATC+AGG | - | chr3_3:73824542-73824561 | Msa0471510:intron | 40.0% | |
| !! | CAGCACCTTATTTCGAGTTT+AGG | + | chr3_3:73824596-73824615 | None:intergenic | 40.0% |
| TTCATGTTCAAATCGCAACC+CGG | + | chr3_3:73824721-73824740 | None:intergenic | 40.0% | |
| ! | AGTCTTCGTCTTTTTCTCTG+AGG | + | chr3_3:73824809-73824828 | None:intergenic | 40.0% |
| AGATAAGGTAGGGCCAACAA+TGG | - | chr3_3:73823705-73823724 | Msa0471510:CDS | 45.0% | |
| TACTCACACACACATGACAC+TGG | - | chr3_3:73823772-73823791 | Msa0471510:intron | 45.0% | |
| TGAGACAACATCGACACATG+TGG | + | chr3_3:73823849-73823868 | None:intergenic | 45.0% | |
| TGTCGATGTTGTCTCAGTGT+CGG | - | chr3_3:73823853-73823872 | Msa0471510:intron | 45.0% | |
| TGTCATTGCATTGCAGAGGT+TGG | - | chr3_3:73824002-73824021 | Msa0471510:intron | 45.0% | |
| GCGGCAGTAAATCCTTTGTT+TGG | - | chr3_3:73824118-73824137 | Msa0471510:CDS | 45.0% | |
| TCACCTAGTGAGCCAAACAA+AGG | + | chr3_3:73824133-73824152 | None:intergenic | 45.0% | |
| CAGATCCCTGGATTTCACAT+CGG | - | chr3_3:73824273-73824292 | Msa0471510:intron | 45.0% | |
| !! | GCAACTTTGAAACCATGGCA+TGG | - | chr3_3:73824367-73824386 | Msa0471510:CDS | 45.0% |
| !! | CTTTGAAACCATGGCATGGA+TGG | - | chr3_3:73824371-73824390 | Msa0471510:CDS | 45.0% |
| CACTATGCAGTTGGAGACAT+AGG | - | chr3_3:73824620-73824639 | Msa0471510:intron | 45.0% | |
| GTTGGAGACATAGGCACAAT+TGG | - | chr3_3:73824629-73824648 | Msa0471510:intron | 45.0% | |
| TCATGTTCAAATCGCAACCC+GGG | + | chr3_3:73824720-73824739 | None:intergenic | 45.0% | |
| ! | GTTGCTTGTGCCTTTTCTTG+AGG | - | chr3_3:73824866-73824885 | Msa0471510:intron | 45.0% |
| TTACATGAAAACAGCAGGGG+AGG | + | chr3_3:73825105-73825124 | None:intergenic | 45.0% | |
| AGATAAGGTAGGGCCAACAA+TGG | - | chr3_3:73823705-73823724 | Msa0471510:CDS | 45.0% | |
| TACTCACACACACATGACAC+TGG | - | chr3_3:73823772-73823791 | Msa0471510:intron | 45.0% | |
| TGAGACAACATCGACACATG+TGG | + | chr3_3:73823849-73823868 | None:intergenic | 45.0% | |
| TGTCGATGTTGTCTCAGTGT+CGG | - | chr3_3:73823853-73823872 | Msa0471510:intron | 45.0% | |
| TGTCATTGCATTGCAGAGGT+TGG | - | chr3_3:73824002-73824021 | Msa0471510:intron | 45.0% | |
| GCGGCAGTAAATCCTTTGTT+TGG | - | chr3_3:73824118-73824137 | Msa0471510:CDS | 45.0% | |
| TCACCTAGTGAGCCAAACAA+AGG | + | chr3_3:73824133-73824152 | None:intergenic | 45.0% | |
| CAGATCCCTGGATTTCACAT+CGG | - | chr3_3:73824273-73824292 | Msa0471510:intron | 45.0% | |
| !! | GCAACTTTGAAACCATGGCA+TGG | - | chr3_3:73824367-73824386 | Msa0471510:CDS | 45.0% |
| !! | CTTTGAAACCATGGCATGGA+TGG | - | chr3_3:73824371-73824390 | Msa0471510:CDS | 45.0% |
| CACTATGCAGTTGGAGACAT+AGG | - | chr3_3:73824620-73824639 | Msa0471510:intron | 45.0% | |
| GTTGGAGACATAGGCACAAT+TGG | - | chr3_3:73824629-73824648 | Msa0471510:intron | 45.0% | |
| TCATGTTCAAATCGCAACCC+GGG | + | chr3_3:73824720-73824739 | None:intergenic | 45.0% | |
| ! | GTTGCTTGTGCCTTTTCTTG+AGG | - | chr3_3:73824866-73824885 | Msa0471510:intron | 45.0% |
| TTACATGAAAACAGCAGGGG+AGG | + | chr3_3:73825105-73825124 | None:intergenic | 45.0% | |
| CCAGCCTCATGATCTTCTTC+AGG | + | chr3_3:73823531-73823550 | None:intergenic | 50.0% | |
| CCTGAAGAAGATCATGAGGC+TGG | - | chr3_3:73823528-73823547 | Msa0471510:intron | 50.0% | |
| AAATCCAGGGATCTGCAGAG+TGG | + | chr3_3:73824268-73824287 | None:intergenic | 50.0% | |
| CAACGCCGATGTGAAATCCA+GGG | + | chr3_3:73824281-73824300 | None:intergenic | 50.0% | |
| ACAACGCCGATGTGAAATCC+AGG | + | chr3_3:73824282-73824301 | None:intergenic | 50.0% | |
| GATGCAATCCATCCATGCCA+TGG | + | chr3_3:73824382-73824401 | None:intergenic | 50.0% | |
| TGCTGCAGACACTATGCAGT+TGG | - | chr3_3:73824611-73824630 | Msa0471510:intron | 50.0% | |
| CGAAGACTGTGACACCCTAA+TGG | - | chr3_3:73824821-73824840 | Msa0471510:intron | 50.0% | |
| CCAGCCTCATGATCTTCTTC+AGG | + | chr3_3:73823531-73823550 | None:intergenic | 50.0% | |
| CCTGAAGAAGATCATGAGGC+TGG | - | chr3_3:73823528-73823547 | Msa0471510:intron | 50.0% | |
| AAATCCAGGGATCTGCAGAG+TGG | + | chr3_3:73824268-73824287 | None:intergenic | 50.0% | |
| CAACGCCGATGTGAAATCCA+GGG | + | chr3_3:73824281-73824300 | None:intergenic | 50.0% | |
| ACAACGCCGATGTGAAATCC+AGG | + | chr3_3:73824282-73824301 | None:intergenic | 50.0% | |
| GATGCAATCCATCCATGCCA+TGG | + | chr3_3:73824382-73824401 | None:intergenic | 50.0% | |
| TGCTGCAGACACTATGCAGT+TGG | - | chr3_3:73824611-73824630 | Msa0471510:intron | 50.0% | |
| CGAAGACTGTGACACCCTAA+TGG | - | chr3_3:73824821-73824840 | Msa0471510:intron | 50.0% | |
| CATTACCTCTGGACCGTAGC+TGG | + | chr3_3:73824534-73824553 | None:intergenic | 55.0% | |
| CATTACCTCTGGACCGTAGC+TGG | + | chr3_3:73824534-73824553 | None:intergenic | 55.0% | |
| TGGGCAAGTCGCTCCAGCTA+CGG | - | chr3_3:73824518-73824537 | Msa0471510:intron | 60.0% | |
| TGGGCAAGTCGCTCCAGCTA+CGG | - | chr3_3:73824518-73824537 | Msa0471510:intron | 60.0% | |
| ! | CGTGCCACTCTGCAGATCCC+TGG | - | chr3_3:73824261-73824280 | Msa0471510:intron | 65.0% |
| TCGCTCCAGCTACGGTCCAG+AGG | - | chr3_3:73824526-73824545 | Msa0471510:intron | 65.0% | |
| ! | CGTGCCACTCTGCAGATCCC+TGG | - | chr3_3:73824261-73824280 | Msa0471510:intron | 65.0% |
| TCGCTCCAGCTACGGTCCAG+AGG | - | chr3_3:73824526-73824545 | Msa0471510:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 73823295 | 73825194 | 73823295 | ID=Msa0471510;Name=Msa0471510 |
| chr3_3 | mRNA | 73823295 | 73825194 | 73823295 | ID=Msa0471510-mRNA-1;Parent=Msa0471510;Name=Msa0471510-mRNA-1;_AED=0.17;_eAED=0.17;_QI=152|0.8|0.66|1|1|1|6|154|219 |
| chr3_3 | exon | 73823295 | 73823484 | 73823295 | ID=Msa0471510-mRNA-1:exon:18783;Parent=Msa0471510-mRNA-1 |
| chr3_3 | exon | 73823584 | 73823727 | 73823584 | ID=Msa0471510-mRNA-1:exon:18782;Parent=Msa0471510-mRNA-1 |
| chr3_3 | exon | 73824075 | 73824229 | 73824075 | ID=Msa0471510-mRNA-1:exon:18781;Parent=Msa0471510-mRNA-1 |
| chr3_3 | exon | 73824366 | 73824471 | 73824366 | ID=Msa0471510-mRNA-1:exon:18780;Parent=Msa0471510-mRNA-1 |
| chr3_3 | exon | 73824727 | 73824782 | 73824727 | ID=Msa0471510-mRNA-1:exon:18779;Parent=Msa0471510-mRNA-1 |
| chr3_3 | exon | 73824880 | 73825194 | 73824880 | ID=Msa0471510-mRNA-1:exon:18778;Parent=Msa0471510-mRNA-1 |
| chr3_3 | five_prime_UTR | 73825043 | 73825194 | 73825043 | ID=Msa0471510-mRNA-1:five_prime_utr;Parent=Msa0471510-mRNA-1 |
| chr3_3 | CDS | 73824880 | 73825042 | 73824880 | ID=Msa0471510-mRNA-1:cds;Parent=Msa0471510-mRNA-1 |
| chr3_3 | CDS | 73824727 | 73824782 | 73824727 | ID=Msa0471510-mRNA-1:cds;Parent=Msa0471510-mRNA-1 |
| chr3_3 | CDS | 73824366 | 73824471 | 73824366 | ID=Msa0471510-mRNA-1:cds;Parent=Msa0471510-mRNA-1 |
| chr3_3 | CDS | 73824075 | 73824229 | 73824075 | ID=Msa0471510-mRNA-1:cds;Parent=Msa0471510-mRNA-1 |
| chr3_3 | CDS | 73823584 | 73823727 | 73823584 | ID=Msa0471510-mRNA-1:cds;Parent=Msa0471510-mRNA-1 |
| chr3_3 | CDS | 73823449 | 73823484 | 73823449 | ID=Msa0471510-mRNA-1:cds;Parent=Msa0471510-mRNA-1 |
| chr3_3 | three_prime_UTR | 73823295 | 73823448 | 73823295 | ID=Msa0471510-mRNA-1:three_prime_utr;Parent=Msa0471510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
