AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0425350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0425350 MtrunA17_Chr3g0127401 99.221 385 3 0 1 385 1 385 0.0 785
Msa0425350 MtrunA17_Chr3g0127431 81.921 354 63 1 5 358 8 360 0.0 595
Msa0425350 MtrunA17_Chr1g0195741 51.211 289 133 3 47 328 905 1192 2.44e-91 298
Msa0425350 MtrunA17_Chr1g0195731 51.211 289 133 3 47 328 901 1188 7.66e-91 296
Msa0425350 MtrunA17_Chr8g0387641 55.378 251 110 2 63 312 503 752 3.70e-90 289
Msa0425350 MtrunA17_Chr3g0116131 52.290 262 124 1 43 303 864 1125 3.48e-87 286
Msa0425350 MtrunA17_Chr4g0038101 45.062 324 164 4 41 359 690 1004 1.54e-85 280
Msa0425350 MtrunA17_Chr5g0397121 53.600 250 114 2 63 311 495 743 2.18e-85 276
Msa0425350 MtrunA17_Chr6g0462581 53.629 248 112 3 63 309 482 727 5.49e-82 266
Msa0425350 MtrunA17_Chr1g0202371 43.505 331 155 4 63 364 379 706 1.12e-79 258
Msa0425350 MtrunA17_Chr1g0202381 43.675 332 154 5 63 364 450 778 1.45e-77 254
Msa0425350 MtrunA17_Chr1g0204031 51.613 248 118 2 63 309 539 785 7.17e-76 251
Msa0425350 MtrunA17_Chr7g0246111 41.924 291 155 6 40 318 162 450 2.42e-62 208
Msa0425350 MtrunA17_Chr6g0459561 41.852 270 148 6 80 344 381 646 1.00e-56 196
Msa0425350 MtrunA17_Chr4g0052271 39.350 277 152 7 80 345 118 389 2.04e-55 187
Msa0425350 MtrunA17_Chr6g0459541 38.667 300 140 9 80 344 41 331 1.53e-52 178
Msa0425350 MtrunA17_Chr4g0004121 37.736 265 150 5 81 332 242 504 2.56e-50 177
Msa0425350 MtrunA17_Chr2g0321241 40.435 230 130 5 80 306 131 356 3.80e-49 171
Msa0425350 MtrunA17_Chr4g0026631 40.435 230 130 5 80 306 126 351 7.36e-48 168
Msa0425350 MtrunA17_Chr6g0459551 36.545 301 145 10 80 344 101 391 3.62e-46 163
Msa0425350 MtrunA17_Chr3g0145011 38.525 244 142 4 67 305 125 365 5.03e-46 162
Msa0425350 MtrunA17_Chr3g0141901 38.115 244 143 4 67 305 122 362 1.41e-45 161
Msa0425350 MtrunA17_Chr1g0180791 40.000 235 131 5 77 306 200 429 3.12e-45 166
Msa0425350 MtrunA17_Chr1g0180791 35.547 256 149 6 80 325 477 726 2.03e-43 161
Msa0425350 MtrunA17_Chr7g0264521 39.394 231 131 4 80 306 205 430 2.27e-44 164
Msa0425350 MtrunA17_Chr7g0264521 35.606 264 153 7 80 333 478 734 8.65e-44 162
Msa0425350 MtrunA17_Chr2g0327121 36.255 251 146 5 80 322 479 723 3.78e-44 163
Msa0425350 MtrunA17_Chr2g0327121 39.301 229 134 3 80 306 206 431 7.30e-43 159
Msa0425350 MtrunA17_Chr4g0050561 39.316 234 131 5 80 306 155 384 7.84e-43 154
Msa0425350 MtrunA17_Chr8g0345461 39.056 233 130 6 80 305 164 391 4.76e-42 152
Msa0425350 MtrunA17_Chr6g0459531 34.926 272 137 7 80 344 66 304 2.58e-40 145
Msa0425350 MtrunA17_Chr1g0200081 38.627 233 130 7 80 305 174 400 2.17e-39 145
Msa0425350 MtrunA17_Chr1g0192151 37.500 232 131 7 82 305 168 393 1.55e-38 143
Msa0425350 MtrunA17_Chr4g0014731 37.339 233 130 7 82 305 169 394 2.14e-38 142
Msa0425350 MtrunA17_Chr7g0262801 37.391 230 134 5 83 306 189 414 4.86e-37 139
Msa0425350 MtrunA17_Chr1g0182711 36.957 230 135 5 83 306 190 415 6.90e-37 139
Msa0425350 MtrunA17_Chr7g0255901 33.803 284 159 10 36 311 611 873 7.80e-37 142
Msa0425350 MtrunA17_Chr3g0108321 44.324 185 93 5 80 258 158 338 2.27e-36 135
Msa0425350 MtrunA17_Chr7g0255721 34.335 233 140 6 81 306 685 911 1.00e-35 139
Msa0425350 MtrunA17_Chr7g0255721 32.889 225 123 7 120 326 422 636 6.83e-27 112
Msa0425350 MtrunA17_Chr7g0255641 33.906 233 141 6 81 306 658 884 7.84e-35 136
Msa0425350 MtrunA17_Chr7g0255641 30.800 250 158 8 86 331 401 639 1.13e-23 103
Msa0425350 MtrunA17_Chr2g0277831 35.685 241 144 6 83 317 245 480 1.10e-34 135
Msa0425350 MtrunA17_Chr2g0277831 30.043 233 156 4 80 308 532 761 2.06e-33 132
Msa0425350 MtrunA17_Chr7g0260601 37.815 238 126 8 81 305 240 468 1.77e-34 134
Msa0425350 MtrunA17_Chr4g0033451 37.295 244 138 8 74 306 371 610 2.23e-34 135
Msa0425350 MtrunA17_Chr7g0217421 37.768 233 130 6 81 305 39 264 7.21e-34 130
Msa0425350 MtrunA17_Chr6g0456351 36.752 234 140 4 76 305 312 541 5.59e-33 130
Msa0425350 MtrunA17_Chr4g0052411 36.017 236 136 6 78 305 226 454 6.13e-33 130
Msa0425350 MtrunA17_Chr7g0248361 38.494 239 123 10 81 305 192 420 6.81e-33 130
Msa0425350 MtrunA17_Chr2g0289231 31.615 291 177 8 80 357 296 577 1.06e-32 129
Msa0425350 MtrunA17_Chr7g0255651 35.021 237 150 3 81 314 282 517 1.22e-32 129
Msa0425350 MtrunA17_Chr7g0255651 33.790 219 131 7 94 305 30 241 1.17e-21 96.7
Msa0425350 MtrunA17_Chr4g0043381 32.342 269 173 6 83 348 839 1101 2.02e-32 129
Msa0425350 MtrunA17_Chr3g0143721 33.119 311 174 13 81 379 249 537 4.51e-32 127
Msa0425350 MtrunA17_Chr5g0432631 33.681 288 170 8 80 363 228 498 4.65e-32 128
Msa0425350 MtrunA17_Chr3g0135761 32.827 329 178 10 44 363 197 491 4.85e-32 127
Msa0425350 MtrunA17_Chr4g0031821 36.402 239 128 9 81 305 320 548 8.11e-32 127
Msa0425350 MtrunA17_Chr6g0476861 37.238 239 126 9 81 305 197 425 1.52e-31 126
Msa0425350 MtrunA17_Chr2g0297281 35.622 233 135 6 81 305 286 511 1.83e-31 126
Msa0425350 MtrunA17_Chr3g0135721 33.449 287 170 8 81 363 224 493 4.13e-31 125
Msa0425350 MtrunA17_Chr2g0316851 32.075 265 158 8 83 330 596 855 7.89e-31 124
Msa0425350 MtrunA17_Chr3g0086411 29.719 249 152 5 80 308 214 459 5.41e-30 120
Msa0425350 MtrunA17_Chr3g0086411 29.936 157 100 4 170 317 7 162 2.49e-12 68.2
Msa0425350 MtrunA17_Chr3g0094871 34.894 235 136 8 81 305 11 238 7.97e-30 119
Msa0425350 MtrunA17_Chr7g0255691 34.127 252 151 5 81 320 286 534 2.37e-29 119
Msa0425350 MtrunA17_Chr7g0255691 36.726 226 127 8 84 299 20 239 1.12e-27 114
Msa0425350 MtrunA17_Chr1g0158881 33.681 288 163 10 83 363 331 597 2.78e-29 119
Msa0425350 MtrunA17_Chr2g0327231 39.286 168 90 4 80 241 345 506 4.00e-29 118
Msa0425350 MtrunA17_Chr2g0327231 39.362 94 48 3 80 171 152 238 2.20e-11 65.1
Msa0425350 MtrunA17_Chr5g0429571 36.402 239 130 8 81 306 313 542 9.57e-29 118
Msa0425350 MtrunA17_Chr3g0104211 36.441 236 134 7 81 306 304 533 1.35e-28 117
Msa0425350 MtrunA17_Chr8g0362771 31.959 291 172 10 80 363 236 507 1.86e-28 117
Msa0425350 MtrunA17_Chr8g0388371 34.310 239 140 5 81 306 404 638 2.61e-28 117
Msa0425350 MtrunA17_Chr2g0331161 30.992 242 140 7 79 306 413 641 4.73e-28 116
Msa0425350 MtrunA17_Chr3g0086401 32.922 243 136 7 80 299 384 622 5.59e-28 115
Msa0425350 MtrunA17_Chr3g0086401 30.233 215 135 6 104 308 116 325 1.52e-20 93.6
Msa0425350 MtrunA17_Chr3g0129971 35.246 244 133 9 81 308 296 530 3.96e-27 113
Msa0425350 MtrunA17_Chr5g0432641 32.154 311 181 11 62 363 171 460 8.90e-27 112
Msa0425350 MtrunA17_Chr3g0135781 38.788 165 93 4 80 242 54 212 1.27e-22 94.7
Msa0425350 MtrunA17_Chr8g0357301 33.333 201 111 7 120 305 507 699 3.93e-22 98.6
Msa0425350 MtrunA17_Chr1g0190401 27.178 287 152 12 13 262 594 860 1.73e-18 87.8
Msa0425350 MtrunA17_Chr4g0047411 31.280 211 116 8 120 308 214 417 1.28e-17 84.7
Msa0425350 MtrunA17_Chr5g0404291 36.735 147 80 6 117 258 386 524 2.61e-15 77.8
Msa0425350 MtrunA17_Chr1g0168321 37.086 151 77 7 167 305 211 355 4.17e-15 76.6
Msa0425350 MtrunA17_Chr6g0450161 32.911 158 87 4 117 266 361 507 7.77e-15 76.3
Msa0425350 MtrunA17_Chr4g0062081 48.750 80 35 3 86 162 12 88 3.07e-14 68.2
Msa0425350 MtrunA17_Chr4g0039781 34.810 158 84 6 117 266 367 513 3.93e-14 73.9
Msa0425350 MtrunA17_Chr1g0204051 35.526 76 48 1 210 285 1 75 3.22e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0425350 AT4G27680.1 75.711 387 92 1 1 385 1 387 0.0 607
Msa0425350 AT5G53540.1 71.762 386 106 2 3 385 6 391 0.0 571
Msa0425350 AT4G02480.1 54.373 263 118 2 47 308 927 1188 2.51e-91 298
Msa0425350 AT1G02890.1 52.593 270 127 1 45 313 905 1174 2.96e-91 298
Msa0425350 AT4G24860.4 53.025 281 126 2 59 333 768 1048 4.96e-90 293
Msa0425350 AT1G64110.2 54.980 251 111 2 63 312 500 749 7.22e-90 288
Msa0425350 AT1G64110.4 54.980 251 111 2 63 312 500 749 7.22e-90 288
Msa0425350 AT1G64110.5 54.980 251 111 2 63 312 498 747 7.26e-90 288
Msa0425350 AT1G64110.3 54.980 251 111 2 63 312 498 747 7.26e-90 288
Msa0425350 AT1G64110.1 54.980 251 111 2 63 312 495 744 7.96e-90 288
Msa0425350 AT4G24860.1 53.025 281 126 2 59 333 795 1075 8.26e-90 293
Msa0425350 AT4G24860.3 53.025 281 126 2 59 333 793 1073 8.51e-90 293
Msa0425350 AT4G24860.2 53.025 281 126 2 59 333 791 1071 9.41e-90 293
Msa0425350 AT3G19740.1 45.427 328 172 4 39 359 657 984 9.06e-86 280
Msa0425350 AT1G50140.2 51.953 256 122 1 60 314 668 923 6.31e-85 278
Msa0425350 AT1G50140.5 51.953 256 122 1 60 314 668 923 6.31e-85 278
Msa0425350 AT1G50140.3 51.953 256 122 1 60 314 690 945 7.37e-85 278
Msa0425350 AT1G50140.1 51.953 256 122 1 60 314 690 945 7.37e-85 278
Msa0425350 AT1G50140.4 51.953 256 122 1 60 314 690 945 7.37e-85 278
Msa0425350 AT5G52882.1 51.894 264 124 3 59 321 492 753 4.43e-84 273
Msa0425350 AT4G28000.3 49.825 285 133 4 63 346 499 774 1.48e-83 271
Msa0425350 AT4G28000.1 49.825 285 133 4 63 346 497 772 3.07e-83 271
Msa0425350 AT4G28000.2 49.825 285 133 4 63 346 499 774 3.67e-83 270
Msa0425350 AT1G62130.2 47.445 274 130 3 39 312 704 963 1.82e-72 244
Msa0425350 AT1G62130.1 47.445 274 130 3 39 312 711 970 2.04e-72 244
Msa0425350 AT1G02890.2 45.926 270 117 2 45 313 905 1146 6.68e-71 241
Msa0425350 AT2G45500.4 44.488 254 131 5 63 310 59 308 1.08e-64 210
Msa0425350 AT2G45500.3 44.488 254 131 5 63 310 59 308 1.08e-64 210
Msa0425350 AT2G45500.1 44.488 254 131 5 63 310 196 445 2.66e-63 211
Msa0425350 AT2G45500.2 44.488 254 131 5 63 310 192 441 3.01e-63 210
Msa0425350 AT2G45500.5 44.488 254 131 5 63 310 202 451 5.62e-63 210
Msa0425350 AT2G34560.1 36.741 313 173 8 38 339 66 364 8.23e-56 188
Msa0425350 AT3G27120.1 44.828 232 122 4 80 308 399 627 1.30e-55 194
Msa0425350 AT2G34560.2 36.741 313 173 8 38 339 75 373 1.50e-55 187
Msa0425350 AT1G80350.1 37.358 265 151 5 81 332 236 498 7.36e-50 176
Msa0425350 AT5G43010.1 38.934 244 141 4 67 305 122 362 2.86e-47 166
Msa0425350 AT1G45000.1 38.934 244 141 4 67 305 122 362 4.13e-47 166
Msa0425350 AT2G27600.1 34.589 292 154 7 80 338 128 415 1.38e-46 165
Msa0425350 AT3G09840.1 39.827 231 130 4 80 306 203 428 4.45e-45 166
Msa0425350 AT3G09840.1 35.019 257 150 6 80 325 476 726 2.43e-42 158
Msa0425350 AT5G03340.1 39.394 231 131 4 80 306 203 428 1.45e-44 164
Msa0425350 AT5G03340.1 36.905 252 141 6 80 319 476 721 1.74e-44 164
Msa0425350 AT3G53230.1 38.961 231 132 4 80 306 204 429 9.22e-44 162
Msa0425350 AT3G53230.1 35.918 245 143 5 80 316 477 715 2.27e-42 158
Msa0425350 AT5G19990.1 39.316 234 131 5 80 306 157 386 1.46e-42 154
Msa0425350 AT5G19990.3 39.316 234 131 5 80 306 157 386 1.46e-42 154
Msa0425350 AT5G20000.1 39.316 234 131 5 80 306 157 386 1.72e-42 154
Msa0425350 AT5G19990.2 39.316 234 131 5 80 306 99 328 1.77e-42 152
Msa0425350 AT1G53750.1 39.056 233 130 6 80 305 164 391 9.33e-42 152
Msa0425350 AT5G58290.1 37.768 233 135 5 80 306 151 379 4.96e-40 147
Msa0425350 AT1G53780.2 38.197 233 130 6 80 304 357 583 1.34e-38 146
Msa0425350 AT1G53780.3 38.197 233 130 6 80 304 335 561 1.34e-38 146
Msa0425350 AT1G53780.1 38.197 233 130 6 80 304 336 562 1.38e-38 146
Msa0425350 AT1G53780.4 38.197 233 130 6 80 304 336 562 1.38e-38 146
Msa0425350 AT3G05530.1 37.339 233 130 7 82 305 169 394 1.55e-38 143
Msa0425350 AT3G56690.1 35.714 238 142 6 81 312 721 953 1.45e-37 144
Msa0425350 AT3G56690.1 29.582 311 203 6 2 308 310 608 5.70e-35 137
Msa0425350 AT1G09100.1 36.910 233 131 7 82 305 168 393 2.33e-37 140
Msa0425350 AT1G03000.1 34.000 250 156 7 76 319 650 896 1.69e-36 141
Msa0425350 AT4G29040.1 36.522 230 136 5 83 306 187 412 3.54e-36 137
Msa0425350 AT2G20140.1 36.522 230 136 5 83 306 187 412 9.74e-36 136
Msa0425350 AT1G05910.1 36.864 236 136 7 80 306 377 608 7.32e-35 137
Msa0425350 AT5G15250.1 37.712 236 126 8 81 305 221 446 6.58e-34 133
Msa0425350 AT3G01610.2 33.610 241 149 5 80 315 524 758 1.56e-33 132
Msa0425350 AT3G01610.2 35.223 247 144 6 83 317 232 474 7.57e-33 130
Msa0425350 AT1G06430.1 37.288 236 133 6 78 305 214 442 1.57e-33 132
Msa0425350 AT1G06430.3 37.288 236 133 6 78 305 214 442 1.57e-33 132
Msa0425350 AT1G06430.2 37.288 236 133 6 78 305 214 442 1.57e-33 132
Msa0425350 AT3G01610.1 33.610 241 149 5 80 315 524 758 1.57e-33 132
Msa0425350 AT3G01610.1 35.223 247 144 6 83 317 232 474 8.16e-33 130
Msa0425350 AT2G30950.1 37.339 233 131 6 81 305 224 449 1.80e-33 132
Msa0425350 AT2G30950.2 37.339 233 131 6 81 305 224 449 1.80e-33 132
Msa0425350 AT2G30950.3 37.339 233 131 6 81 305 224 449 1.80e-33 132
Msa0425350 AT2G30950.4 37.339 233 131 6 81 305 228 453 1.89e-33 132
Msa0425350 AT5G42270.1 33.548 310 174 12 81 379 247 535 5.89e-33 130
Msa0425350 AT5G08470.1 33.086 269 171 6 83 348 843 1105 7.35e-33 131
Msa0425350 AT5G08470.3 33.086 269 171 6 83 348 834 1096 7.39e-33 130
Msa0425350 AT1G50250.1 33.548 310 174 12 81 379 259 547 1.41e-32 129
Msa0425350 AT2G29080.1 37.553 237 127 8 81 305 319 546 4.47e-32 128
Msa0425350 AT1G07510.1 36.820 239 127 9 81 305 324 552 1.05e-31 127
Msa0425350 AT3G02450.1 36.364 231 135 6 81 305 331 555 1.35e-31 126
Msa0425350 AT2G26140.1 33.798 287 169 8 81 363 224 493 1.72e-31 126
Msa0425350 AT2G03670.2 35.426 223 131 7 86 299 24 242 9.03e-31 122
Msa0425350 AT2G03670.2 36.842 114 71 1 81 194 283 395 1.76e-12 68.9
Msa0425350 AT5G58870.1 36.626 243 132 8 77 306 322 555 1.32e-30 124
Msa0425350 AT5G15250.2 34.483 261 123 9 81 305 221 469 1.73e-30 122
Msa0425350 AT4G04180.2 31.174 247 149 6 80 314 310 547 3.04e-30 122
Msa0425350 AT4G04180.1 31.174 247 149 6 80 314 315 552 3.17e-30 122
Msa0425350 AT2G03670.1 35.426 223 131 7 86 299 24 242 3.75e-30 122
Msa0425350 AT2G03670.1 32.174 230 151 3 81 306 283 511 2.52e-26 111
Msa0425350 AT5G53170.1 32.653 294 176 9 74 363 352 627 1.68e-29 120
Msa0425350 AT3G47060.1 34.959 246 138 8 81 313 322 558 8.19e-29 119
Msa0425350 AT4G23940.1 34.959 246 136 7 81 310 427 664 1.65e-28 118
Msa0425350 AT3G15120.1 31.667 240 147 7 83 308 718 954 2.96e-28 117
Msa0425350 AT3G15120.2 31.667 240 147 7 83 308 728 964 3.13e-28 117
Msa0425350 AT3G16290.1 30.992 242 140 7 79 306 405 633 1.10e-26 112
Msa0425350 AT1G45000.2 38.562 153 90 2 67 216 122 273 3.27e-26 107
Msa0425350 AT1G79560.3 35.644 202 107 7 120 306 527 720 9.55e-26 109
Msa0425350 AT1G79560.1 35.644 202 107 7 120 306 527 720 1.01e-25 109
Msa0425350 AT1G79560.2 35.644 202 107 7 120 306 527 720 1.06e-25 109
Msa0425350 AT5G64580.1 34.568 243 136 9 81 308 313 547 1.36e-25 109
Msa0425350 AT3G04340.1 31.658 199 117 8 73 262 776 964 6.68e-17 83.2
Msa0425350 AT4G04910.1 30.806 211 117 8 120 308 251 454 1.14e-16 82.4
Msa0425350 AT5G08470.2 34.161 161 100 5 83 242 843 998 1.49e-16 82.0
Msa0425350 AT5G16930.1 34.969 163 77 7 118 267 397 543 1.69e-14 75.5
Msa0425350 AT2G18330.1 32.877 146 87 4 117 258 383 521 2.20e-14 75.1
Msa0425350 AT3G03060.1 32.075 159 89 4 117 267 384 531 2.56e-14 75.1
Msa0425350 AT4G36580.1 32.877 146 87 4 117 258 380 518 1.81e-13 72.4

Find 135 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCTCAAGCCTTTGAAAT+TGG 0.177781 3_2:-75734169 Msa0425350:CDS
ATATATCAGCCCTCTCTTTC+CGG 0.226986 3_2:+75734137 None:intergenic
CAGGGAATTATCTAAGATTA+TGG 0.229656 3_2:-75733480 Msa0425350:CDS
TATATTGAAGGTTATCTTAA+AGG 0.231299 3_2:-75734119 Msa0425350:CDS
CAACACACTTACCAAGCTTT+TGG 0.251388 3_2:+75737527 None:intergenic
ACCTTTGTCGCAGGCAGATT+TGG 0.252995 3_2:-75733618 Msa0425350:CDS
AGTGTATAATAATACAAGTT+TGG 0.261791 3_2:+75733345 None:intergenic
CTAGGGCGGCGCTAAGTTAC+TGG 0.265505 3_2:-75738449 Msa0425350:CDS
ATGTAGAATTTGACTCTATT+GGG 0.269048 3_2:-75737777 Msa0425350:CDS
CCCCAAACCATTTGCTCATC+AGG 0.271211 3_2:+75737554 None:intergenic
ACCTGATGAGCAAATGGTTT+GGG 0.311167 3_2:-75737555 Msa0425350:CDS
TTATGCAGTATTTCTCTAAT+AGG 0.315812 3_2:+75733992 None:intergenic
AAGTAATTGCGGTTGCAATC+TGG 0.316109 3_2:+75733386 None:intergenic
GATGTAGAATTTGACTCTAT+TGG 0.317232 3_2:-75737778 Msa0425350:CDS
AAACTGAGTTCATGGCTCTA+TGG 0.320401 3_2:-75734401 Msa0425350:CDS
ACATCAAGAACGTCGTTTCA+TGG 0.355841 3_2:-75733536 Msa0425350:CDS
AAACATGAAAACTGAGTTCA+TGG 0.362291 3_2:-75734409 Msa0425350:CDS
TACTTCATCGATGAATATAA+TGG 0.362913 3_2:+75734479 None:intergenic
AATGGGTACCTCATAGGAAT+TGG 0.365618 3_2:+75738317 None:intergenic
TTCTTCGATGATTCACGGTT+CGG 0.366779 3_2:+75738396 None:intergenic
AAAACAAGTCTGGTCGTTGC+AGG 0.370845 3_2:+75737707 None:intergenic
TCTTCGATGATTCACGGTTC+GGG 0.377468 3_2:+75738397 None:intergenic
CTCAGGTTGAAGCTGCAATC+AGG 0.378795 3_2:-75733499 Msa0425350:CDS
AAAGCTATTGCCAAGGAGTC+TGG 0.379922 3_2:-75737607 Msa0425350:CDS
TTGTATGGACCTCCTGGCAC+TGG 0.386661 3_2:-75737646 Msa0425350:CDS
ACGTCGTTTCATGGCGAGTC+AGG 0.388975 3_2:-75733527 Msa0425350:CDS
TAGGAATTGGTTTGAATAAG+AGG 0.390998 3_2:+75738330 None:intergenic
CAAACTTCTTGGACCACAAA+AGG 0.392804 3_2:-75737677 Msa0425350:CDS
TGTAGAGAGTGCTCGGGTTA+TGG 0.397237 3_2:-75734245 Msa0425350:intron
TTTAATCCTGAGCATCTACT+TGG 0.407390 3_2:+75733444 None:intergenic
ATATTGAAGGTTATCTTAAA+GGG 0.410430 3_2:-75734118 Msa0425350:CDS
TGCAACCGCAATTACTTCCT+TGG 0.410829 3_2:-75733380 Msa0425350:three_prime_UTR
GTGTATAATAATACAAGTTT+GGG 0.426349 3_2:+75733346 None:intergenic
AACCTGATGAGCAAATGGTT+TGG 0.428222 3_2:-75737556 Msa0425350:CDS
CACGGTTCGGGTCGAGATAA+CGG 0.430729 3_2:+75738409 None:intergenic
AGGGAATTATCTAAGATTAT+GGG 0.432152 3_2:-75733479 Msa0425350:CDS
AGTAATTGCGGTTGCAATCT+GGG 0.435060 3_2:+75733387 None:intergenic
TTTGTTGTGTAGAGAGTGCT+CGG 0.435075 3_2:-75734252 Msa0425350:intron
GTATCCAACCACCGAATTTG+TGG 0.435521 3_2:+75738585 None:intergenic
AAACTTCTTGGACCACAAAA+GGG 0.435723 3_2:-75737676 Msa0425350:CDS
TTGTTCTTTCGTTCGTTCAA+AGG 0.441863 3_2:-75738526 Msa0425350:five_prime_UTR
GAGCCTTCTTCGATGATTCA+CGG 0.446293 3_2:+75738391 None:intergenic
AATGCAGTATTATCTGTTGC+AGG 0.449995 3_2:-75733141 Msa0425350:three_prime_UTR
TCCAAATCTGCCTGCGACAA+AGG 0.458633 3_2:+75733617 None:intergenic
CTTTATTTATGATTGTTGTT+CGG 0.460836 3_2:-75733237 Msa0425350:three_prime_UTR
ATGTCTTCCGCGAAGTAGAA+AGG 0.461125 3_2:+75733588 None:intergenic
GTTCTGTTGTATGGACCTCC+TGG 0.464854 3_2:-75737652 Msa0425350:CDS
TTCGCGTAAGTTTCTGAGGT+GGG 0.468999 3_2:+75738692 None:intergenic
CATGGTACAATATCAAAAGT+AGG 0.470098 3_2:+75733189 None:intergenic
ATAGATTTCAGTTATATAGC+TGG 0.470990 3_2:-75734076 Msa0425350:CDS
TCAGCCCTCTCTTTCCGGTC+TGG 0.471982 3_2:+75734142 None:intergenic
TACTGCATAATGAGAAGAAA+GGG 0.472605 3_2:-75733979 Msa0425350:CDS
TCACATCCAAGTAGATGCTC+AGG 0.475230 3_2:-75733450 Msa0425350:CDS
TGGCGAGTCAGGTGATTCTC+AGG 0.479528 3_2:-75733516 Msa0425350:CDS
AGTGGCTGCCGTATTTAGCT+TGG 0.481021 3_2:-75734520 Msa0425350:CDS
TCTATTTGATCTTTGCAAGA+AGG 0.483151 3_2:-75734026 Msa0425350:CDS
TATCAAACCTGATGAGCAAA+TGG 0.483375 3_2:-75737561 Msa0425350:CDS
CCCTAGCCGCGTATAACAAC+AGG 0.485855 3_2:+75738466 None:intergenic
GAAAACTGCTCCAGACTCCT+TGG 0.486780 3_2:+75737597 None:intergenic
AATTCTACATCGATGTGGTC+AGG 0.489405 3_2:+75737790 None:intergenic
TATTCAAACCAATTCCTATG+AGG 0.495023 3_2:-75738325 Msa0425350:intron
TGCATGAAATTCTGAGCTAA+AGG 0.497231 3_2:+75733300 None:intergenic
TCTGCCTGCGACAAAGGTCT+AGG 0.503149 3_2:+75733623 None:intergenic
ATACTGCATAATGAGAAGAA+AGG 0.503244 3_2:-75733980 Msa0425350:CDS
AAAGAGATTGCTAAACGTCT+TGG 0.508962 3_2:-75738357 Msa0425350:CDS
TTTGGGGATGCCCAAAAGCT+TGG 0.509153 3_2:-75737538 Msa0425350:intron
TTGCCATGCGAAAACAAGTC+TGG 0.509217 3_2:+75737697 None:intergenic
ATGGTACAATATCAAAAGTA+GGG 0.510191 3_2:+75733190 None:intergenic
CAGACCACAAATTCGGTGGT+TGG 0.510204 3_2:-75738589 Msa0425350:five_prime_UTR
GGCGCTAAGTTACTGGGTAT+TGG 0.511795 3_2:-75738442 Msa0425350:CDS
AACTGAGTTCATGGCTCTAT+GGG 0.515199 3_2:-75734400 Msa0425350:CDS
TTTCGTTCGTTCAAAGGACA+TGG 0.522908 3_2:-75738520 Msa0425350:exon
AAGTTACTGGGTATTGGTCA+CGG 0.526475 3_2:-75738436 Msa0425350:CDS
GGGAATTATCTAAGATTATG+GGG 0.530906 3_2:-75733478 Msa0425350:CDS
TATATAGCTGGTTTATGCAA+GGG 0.532236 3_2:-75734064 Msa0425350:CDS
TTTATGAGCCAAGCTAAATA+CGG 0.532998 3_2:+75734512 None:intergenic
AGAGAGGGCTGATATATTGA+AGG 0.534415 3_2:-75734131 Msa0425350:CDS
GAACCGTGAATCATCGAAGA+AGG 0.537058 3_2:-75738394 Msa0425350:CDS
TCCTTTCGCGTAAGTTTCTG+AGG 0.538081 3_2:+75738688 None:intergenic
TTCTACTTCGCGGAAGACAT+CGG 0.539207 3_2:-75733585 Msa0425350:CDS
AATTTGACTGCATCATATCA+TGG 0.539356 3_2:+75733171 None:intergenic
GGTTTATGCAAGGGTTACAC+TGG 0.540877 3_2:-75734055 Msa0425350:CDS
TGTCTTCCGCGAAGTAGAAA+GGG 0.540884 3_2:+75733589 None:intergenic
TTCTGAGCTAAAGGCAACAC+TGG 0.542075 3_2:+75733309 None:intergenic
GTCAGGATTTATAACATCAC+AGG 0.543896 3_2:+75737807 None:intergenic
AGTTACTGGGTATTGGTCAC+GGG 0.546408 3_2:-75738435 Msa0425350:CDS
TTGAAATTGGATATCCAGAC+CGG 0.547953 3_2:-75734156 Msa0425350:CDS
TTATATAGCTGGTTTATGCA+AGG 0.548540 3_2:-75734065 Msa0425350:CDS
GTCTGGATATCCAATTTCAA+AGG 0.556914 3_2:+75734159 None:intergenic
TAAATAAAGTCTAGTATACA+TGG 0.557154 3_2:+75733251 None:intergenic
TCAGGTTGAAGCTGCAATCA+GGG 0.557401 3_2:-75733498 Msa0425350:CDS
TGTAGAATTTGACTCTATTG+GGG 0.558850 3_2:-75737776 Msa0425350:CDS
TTGTGGTCTGCGAAAATCGA+GGG 0.562863 3_2:+75738602 None:intergenic
ATTGCTTCATCAAGTTCTGA+AGG 0.564553 3_2:+75734202 None:intergenic
CCTGTTGTTATACGCGGCTA+GGG 0.564962 3_2:-75738466 Msa0425350:CDS
GGTTATCTTAAAGGGCGAGA+AGG 0.568954 3_2:-75734110 Msa0425350:CDS
ACCTGTTGTTATACGCGGCT+AGG 0.569819 3_2:-75738467 Msa0425350:CDS
TTTCGCGTAAGTTTCTGAGG+TGG 0.571830 3_2:+75738691 None:intergenic
AAACAAGTCTGGTCGTTGCA+GGG 0.572120 3_2:+75737708 None:intergenic
GAGTTCATGGCTCTATGGGA+TGG 0.573516 3_2:-75734396 Msa0425350:CDS
GTCGCAGGCAGATTTGGAGA+AGG 0.576617 3_2:-75733612 Msa0425350:CDS
TATCCAATTTCAAAGGCTTG+AGG 0.578118 3_2:+75734166 None:intergenic
AACTTCTTGGACCACAAAAG+GGG 0.581082 3_2:-75737675 Msa0425350:CDS
TAGGGCGGCGCTAAGTTACT+GGG 0.582080 3_2:-75738448 Msa0425350:CDS
TTCGTTCGTTCAAAGGACAT+GGG 0.588484 3_2:-75738519 Msa0425350:exon
TCATCGATGAATATAATGGA+TGG 0.591454 3_2:+75734483 None:intergenic
GGAACCTAGACCTTTGTCGC+AGG 0.591455 3_2:-75733627 Msa0425350:CDS
TTCGCAGACCACAAATTCGG+TGG 0.598079 3_2:-75738593 Msa0425350:five_prime_UTR
ACCTCAGAAACTTACGCGAA+AGG 0.600996 3_2:-75738689 Msa0425350:five_prime_UTR
AACAAGTCTGGTCGTTGCAG+GGG 0.601495 3_2:+75737709 None:intergenic
TGTATGGACCTCCTGGCACT+GGG 0.603811 3_2:-75737645 Msa0425350:CDS
AGAAGGCCCTTTCTACTTCG+CGG 0.604409 3_2:-75733595 Msa0425350:CDS
GATATCCAGACCGGAAAGAG+AGG 0.613846 3_2:-75734147 Msa0425350:CDS
AATAACCAAGGAAGTAATTG+CGG 0.616781 3_2:+75733375 None:intergenic
TAATATTCAATCAATACTTG+CGG 0.621882 3_2:+75738649 None:intergenic
AACTTGATGAAGCAATACTT+CGG 0.627940 3_2:-75734195 Msa0425350:CDS
GTTGTTATACGCGGCTAGGG+CGG 0.629884 3_2:-75738463 Msa0425350:CDS
TTGCTTCATCAAGTTCTGAA+GGG 0.630399 3_2:+75734203 None:intergenic
GGAATTATCTAAGATTATGG+GGG 0.631503 3_2:-75733477 Msa0425350:CDS
TTCTCTAATAGGAAAATATG+CGG 0.632360 3_2:+75734003 None:intergenic
GCGTCGTTCATCAGATCATG+AGG 0.633325 3_2:-75734439 Msa0425350:CDS
GTTCGTTCAAAGGACATGGG+AGG 0.635319 3_2:-75738516 Msa0425350:exon
TTGTTGTGTAGAGAGTGCTC+GGG 0.636406 3_2:-75734251 Msa0425350:intron
ACTTCTTGGACCACAAAAGG+GGG 0.638715 3_2:-75737674 Msa0425350:CDS
TTTGTGGTCTGCGAAAATCG+AGG 0.647203 3_2:+75738601 None:intergenic
GCTCGCAAAAGCTATTGCCA+AGG 0.654543 3_2:-75737614 Msa0425350:CDS
ACAAGACCTGTTGTTATACG+CGG 0.658412 3_2:-75738472 Msa0425350:CDS
ATATCCAGACCGGAAAGAGA+GGG 0.660218 3_2:-75734146 Msa0425350:CDS
TTTGGGAACTAGAATAACCA+AGG 0.669935 3_2:+75733363 None:intergenic
GTAGAATTTGACTCTATTGG+GGG 0.672250 3_2:-75737775 Msa0425350:CDS
ACTGCATAATGAGAAGAAAG+GGG 0.674597 3_2:-75733978 Msa0425350:CDS
CCTGATGAGCAAATGGTTTG+GGG 0.676141 3_2:-75737554 Msa0425350:CDS
TGTGGTCTGCGAAAATCGAG+GGG 0.683578 3_2:+75738603 None:intergenic
AGTCAAATTCTACATCGATG+TGG 0.703743 3_2:+75737785 None:intergenic
GTACAATATCAAAAGTAGGG+CGG 0.723420 3_2:+75733193 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAAAAAAGTATTAAAAAAT+GGG + chr3_2:75733542-75733561 None:intergenic 10.0%
!!! ATGAAAAAAGTATTAAAAAA+TGG + chr3_2:75733543-75733562 None:intergenic 10.0%
!! AATTAAATCACTTAAATAAA+AGG + chr3_2:75733981-75734000 None:intergenic 10.0%
!! AATAAAAGGAAAAGTAATAT+TGG + chr3_2:75733967-75733986 None:intergenic 15.0%
!!! TAAATTTTTGCTAATACATA+TGG - chr3_2:75734464-75734483 Msa0425350:CDS 15.0%
!!! ACACTTATATTTTTCATAAA+AGG - chr3_2:75734518-75734537 Msa0425350:CDS 15.0%
!!! AAGTTTCTTTAAGTTTTTAT+TGG + chr3_2:75735112-75735131 None:intergenic 15.0%
!! TTATATATGATAGAACATTA+TGG - chr3_2:75735172-75735191 Msa0425350:intron 15.0%
!! TATTAAAGAAAAAGATCAAA+CGG + chr3_2:75735691-75735710 None:intergenic 15.0%
!!! TTTTATTAGCCAATAAAAAT+AGG + chr3_2:75736467-75736486 None:intergenic 15.0%
!!! ATTTTTATTGGCTAATAAAA+TGG - chr3_2:75736467-75736486 Msa0425350:intron 15.0%
!! ATTTGAAAATTGAAATAGAA+GGG - chr3_2:75736766-75736785 Msa0425350:intron 15.0%
!! TAATATTCAATCAATACTTG+CGG + chr3_2:75733193-75733212 None:intergenic 20.0%
!! TATCAACAACAATTGAAAAT+TGG + chr3_2:75733579-75733598 None:intergenic 20.0%
!!! TAATAAATTATGCTAGTCTT+AGG + chr3_2:75733618-75733637 None:intergenic 20.0%
!! TAAGACTAGCATAATTTATT+AGG - chr3_2:75733617-75733636 Msa0425350:CDS 20.0%
!! AAGACTAGCATAATTTATTA+GGG - chr3_2:75733618-75733637 Msa0425350:CDS 20.0%
!!! CTTTTTCTAGCTTATATATA+GGG - chr3_2:75733842-75733861 Msa0425350:intron 20.0%
!!! CATGATCAGAATATTTTTTT+TGG + chr3_2:75734441-75734460 None:intergenic 20.0%
!! AAACTTATTAAGATTGATCT+AGG - chr3_2:75735126-75735145 Msa0425350:intron 20.0%
!! AACTTATTAAGATTGATCTA+GGG - chr3_2:75735127-75735146 Msa0425350:intron 20.0%
!!! GTTTATTGATTACCTTAAAA+GGG - chr3_2:75735319-75735338 Msa0425350:intron 20.0%
!! CGGTAATGTAAAAAAAAAAA+GGG + chr3_2:75735493-75735512 None:intergenic 20.0%
!! TTTCTTTAATATTGTAACTG+TGG - chr3_2:75735700-75735719 Msa0425350:intron 20.0%
!!! AGCTATTTTTTTTATATCTG+TGG + chr3_2:75736147-75736166 None:intergenic 20.0%
!! AAACTATTGGAAATACAATT+AGG + chr3_2:75736354-75736373 None:intergenic 20.0%
!!! TTAGTTCAGTTTTAAAAAAG+TGG - chr3_2:75736518-75736537 Msa0425350:intron 20.0%
!! CAGTTCAAAACTATATAAAA+TGG - chr3_2:75736543-75736562 Msa0425350:intron 20.0%
!! CATTTGAAAATTGAAATAGA+AGG - chr3_2:75736765-75736784 Msa0425350:intron 20.0%
!!! ACAATAGAAATTTTGTCAAA+TGG + chr3_2:75736823-75736842 None:intergenic 20.0%
!! TTTGTGAAAGAAGTTATTAT+TGG - chr3_2:75736871-75736890 Msa0425350:intron 20.0%
!! CTTATTATAGCAGTTAATAA+AGG - chr3_2:75737133-75737152 Msa0425350:intron 20.0%
!! TTGATAAATGAAACATAGTT+AGG + chr3_2:75737171-75737190 None:intergenic 20.0%
!! ACTTATATTGTATAATCAGT+CGG + chr3_2:75737197-75737216 None:intergenic 20.0%
!! TATATTGAAGGTTATCTTAA+AGG - chr3_2:75737720-75737739 Msa0425350:CDS 20.0%
!! ATATTGAAGGTTATCTTAAA+GGG - chr3_2:75737721-75737740 Msa0425350:CDS 20.0%
!! AATGAAAAATATACTAACAC+AGG + chr3_2:75737893-75737912 None:intergenic 20.0%
!! AATCAGACAAATATAACTTT+GGG + chr3_2:75738053-75738072 None:intergenic 20.0%
!! TAATCAGACAAATATAACTT+TGG + chr3_2:75738054-75738073 None:intergenic 20.0%
!!! TTATTTATTTTTCACGTTTC+AGG - chr3_2:75738191-75738210 Msa0425350:intron 20.0%
!! GTGTATAATAATACAAGTTT+GGG + chr3_2:75738496-75738515 None:intergenic 20.0%
!! AGTGTATAATAATACAAGTT+TGG + chr3_2:75738497-75738516 None:intergenic 20.0%
!! TAAATAAAGTCTAGTATACA+TGG + chr3_2:75738591-75738610 None:intergenic 20.0%
!!! CTTTATTTATGATTGTTGTT+CGG - chr3_2:75738602-75738621 Msa0425350:five_prime_UTR 20.0%
! CCTATATATAAGCTAGAAAA+AGG + chr3_2:75733844-75733863 None:intergenic 25.0%
!!! CCTTTTTCTAGCTTATATAT+AGG - chr3_2:75733841-75733860 Msa0425350:intron 25.0%
!! ATAGCCTTTGAAAACTAATA+CGG + chr3_2:75733875-75733894 None:intergenic 25.0%
! ATGTAGAATTTGACTCTATT+GGG - chr3_2:75734062-75734081 Msa0425350:CDS 25.0%
!!! GATCAGAATATTTTTTTTGG+TGG + chr3_2:75734438-75734457 None:intergenic 25.0%
!! AAGGCACAATATATTTTGTA+TGG - chr3_2:75734851-75734870 Msa0425350:intron 25.0%
!! AGGCACAATATATTTTGTAT+GGG - chr3_2:75734852-75734871 Msa0425350:intron 25.0%
! TAATCAATAAACCAATCTCA+AGG + chr3_2:75735311-75735330 None:intergenic 25.0%
!! GGTTTATTGATTACCTTAAA+AGG - chr3_2:75735318-75735337 Msa0425350:intron 25.0%
! GCGGTAATGTAAAAAAAAAA+AGG + chr3_2:75735494-75735513 None:intergenic 25.0%
! TTTCAATGAAGAACAACAAA+TGG + chr3_2:75735800-75735819 None:intergenic 25.0%
! AGAATCTCACAAGAAATATT+GGG + chr3_2:75735823-75735842 None:intergenic 25.0%
! GTATTCTTAACAAATGATGT+AGG - chr3_2:75736168-75736187 Msa0425350:intron 25.0%
! TGTCTTGTGAAATAATATGT+AGG - chr3_2:75736282-75736301 Msa0425350:intron 25.0%
! TTGGAAATACAATTAGGAAT+TGG + chr3_2:75736348-75736367 None:intergenic 25.0%
! AATAAAATGGACGTCATATT+AGG - chr3_2:75736480-75736499 Msa0425350:intron 25.0%
! ATAAAATGGACGTCATATTA+GGG - chr3_2:75736481-75736500 Msa0425350:intron 25.0%
! AAAGAAGTTATTATTGGAAC+TGG - chr3_2:75736877-75736896 Msa0425350:intron 25.0%
! CTTATATTGTATAATCAGTC+GGG + chr3_2:75737196-75737215 None:intergenic 25.0%
! TACTTCATCGATGAATATAA+TGG + chr3_2:75737363-75737382 None:intergenic 25.0%
! ACTACTTAAAAACTTACGAT+CGG + chr3_2:75737477-75737496 None:intergenic 25.0%
! ATAGATTTCAGTTATATAGC+TGG - chr3_2:75737763-75737782 Msa0425350:CDS 25.0%
! TTCTCTAATAGGAAAATATG+CGG + chr3_2:75737839-75737858 None:intergenic 25.0%
! TTATGCAGTATTTCTCTAAT+AGG + chr3_2:75737850-75737869 None:intergenic 25.0%
!!! TTGTTTTTTCATATCATGAG+CGG - chr3_2:75738143-75738162 Msa0425350:intron 25.0%
!! AGGGAATTATCTAAGATTAT+GGG - chr3_2:75738360-75738379 Msa0425350:CDS 25.0%
! ATGGTACAATATCAAAAGTA+GGG + chr3_2:75738652-75738671 None:intergenic 25.0%
!! TAGGAATTGGTTTGAATAAG+AGG + chr3_2:75733512-75733531 None:intergenic 30.0%
TATTCAAACCAATTCCTATG+AGG - chr3_2:75733514-75733533 Msa0425350:CDS 30.0%
TTAAAAAATGGGTACCTCAT+AGG + chr3_2:75733531-75733550 None:intergenic 30.0%
ACTAATTCTAGGCCTAATTT+CGG - chr3_2:75733697-75733716 Msa0425350:intron 30.0%
TTGAAAACTAATACGGAACA+TGG + chr3_2:75733868-75733887 None:intergenic 30.0%
!!! TGTTCCGTATTAGTTTTCAA+AGG - chr3_2:75733868-75733887 Msa0425350:intron 30.0%
AAGCATAAAACTATCCTATG+CGG - chr3_2:75733898-75733917 Msa0425350:intron 30.0%
GATGTAGAATTTGACTCTAT+TGG - chr3_2:75734061-75734080 Msa0425350:CDS 30.0%
TGTAGAATTTGACTCTATTG+GGG - chr3_2:75734063-75734082 Msa0425350:CDS 30.0%
GACAATGCATAATATATGCA+AGG - chr3_2:75734390-75734409 Msa0425350:CDS 30.0%
!!! CAGAATATTTTTTTTGGTGG+TGG + chr3_2:75734435-75734454 None:intergenic 30.0%
!! AGAAAGCATCAACAATTGTA+TGG + chr3_2:75734563-75734582 None:intergenic 30.0%
TACAGTGTGATTACAATAGT+TGG + chr3_2:75734612-75734631 None:intergenic 30.0%
! ATAGTTTCTTTTGCTGAGAA+GGG - chr3_2:75734772-75734791 Msa0425350:intron 30.0%
!! TGCTTGATTTATTTTCGTGT+TGG + chr3_2:75734901-75734920 None:intergenic 30.0%
AGAGGTTTACAAGCATAAAT+AGG + chr3_2:75735422-75735441 None:intergenic 30.0%
GGTTCGTTAGTTAATTAAAG+AGG + chr3_2:75735440-75735459 None:intergenic 30.0%
GATGTCATTCTCTTAATGTT+AGG + chr3_2:75735461-75735480 None:intergenic 30.0%
ATTATGATGTACGTTACTGT+AGG - chr3_2:75735579-75735598 Msa0425350:intron 30.0%
TTCTTCATATTCCATTTGCT+TGG - chr3_2:75735618-75735637 Msa0425350:intron 30.0%
TCTTCATATTCCATTTGCTT+GGG - chr3_2:75735619-75735638 Msa0425350:intron 30.0%
TTCTACTATAACCTTTGCTT+AGG + chr3_2:75735664-75735683 None:intergenic 30.0%
TATTGTAACTGTGGTCAATT+TGG - chr3_2:75735709-75735728 Msa0425350:intron 30.0%
ATTGTAACTGTGGTCAATTT+GGG - chr3_2:75735710-75735729 Msa0425350:intron 30.0%
! GATGTGGGTTTTTATATGTT+GGG + chr3_2:75735771-75735790 None:intergenic 30.0%
CAGAATCTCACAAGAAATAT+TGG + chr3_2:75735824-75735843 None:intergenic 30.0%
TTATTTCACAAGACAAAGCA+AGG + chr3_2:75736277-75736296 None:intergenic 30.0%
TGCACAGAAAACAAAACTAT+TGG + chr3_2:75736367-75736386 None:intergenic 30.0%
!!! TCTAGGGTTCCTATTTTTAT+TGG - chr3_2:75736455-75736474 Msa0425350:intron 30.0%
ATGGATAACAACCTTACATT+GGG - chr3_2:75736716-75736735 Msa0425350:intron 30.0%
TTCTTCCATCCATCTATTTA+AGG - chr3_2:75736797-75736816 Msa0425350:intron 30.0%
TCTTTCACAAATAGTGCATT+CGG + chr3_2:75736862-75736881 None:intergenic 30.0%
!!! TGGAACTGGTTTTTGAAATA+AGG - chr3_2:75736891-75736910 Msa0425350:intron 30.0%
TCCAGTTTAGAAAGAGTAAA+AGG - chr3_2:75736933-75736952 Msa0425350:intron 30.0%
! ACCTTTTACTCTTTCTAAAC+TGG + chr3_2:75736937-75736956 None:intergenic 30.0%
!!! TCTCCCTTATTGTTTTTTTC+TGG - chr3_2:75736956-75736975 Msa0425350:intron 30.0%
CGACCAGAAAAAAACAATAA+GGG + chr3_2:75736962-75736981 None:intergenic 30.0%
TCGACCAGAAAAAAACAATA+AGG + chr3_2:75736963-75736982 None:intergenic 30.0%
AGTGTATATATGCTTAGTGA+TGG - chr3_2:75737014-75737033 Msa0425350:intron 30.0%
TGTTGTTATAGAACCAATAC+AGG + chr3_2:75737045-75737064 None:intergenic 30.0%
!! ATGTGTGGTTATTTCTTTGA+AGG - chr3_2:75737077-75737096 Msa0425350:intron 30.0%
TAACTGCTATAATAAGCACT+TGG + chr3_2:75737129-75737148 None:intergenic 30.0%
TTTATGAGCCAAGCTAAATA+CGG + chr3_2:75737330-75737349 None:intergenic 30.0%
! TCATCGATGAATATAATGGA+TGG + chr3_2:75737359-75737378 None:intergenic 30.0%
!!! GATGAAGTAGACAGTTTTTT+GGG - chr3_2:75737374-75737393 Msa0425350:intron 30.0%
AAACATGAAAACTGAGTTCA+TGG - chr3_2:75737430-75737449 Msa0425350:intron 30.0%
AACTTGATGAAGCAATACTT+CGG - chr3_2:75737644-75737663 Msa0425350:CDS 30.0%
! TTATATAGCTGGTTTATGCA+AGG - chr3_2:75737774-75737793 Msa0425350:CDS 30.0%
! TATATAGCTGGTTTATGCAA+GGG - chr3_2:75737775-75737794 Msa0425350:CDS 30.0%
TCTATTTGATCTTTGCAAGA+AGG - chr3_2:75737813-75737832 Msa0425350:CDS 30.0%
ATACTGCATAATGAGAAGAA+AGG - chr3_2:75737859-75737878 Msa0425350:intron 30.0%
TACTGCATAATGAGAAGAAA+GGG - chr3_2:75737860-75737879 Msa0425350:intron 30.0%
CTGGGAAAATTCAAAAAACA+TGG + chr3_2:75737936-75737955 None:intergenic 30.0%
! AACAGCATATTTTCACTTCT+GGG + chr3_2:75737954-75737973 None:intergenic 30.0%
! AAACAGCATATTTTCACTTC+TGG + chr3_2:75737955-75737974 None:intergenic 30.0%
! CAGGGAATTATCTAAGATTA+TGG - chr3_2:75738359-75738378 Msa0425350:CDS 30.0%
! GGGAATTATCTAAGATTATG+GGG - chr3_2:75738361-75738380 Msa0425350:CDS 30.0%
! GGAATTATCTAAGATTATGG+GGG - chr3_2:75738362-75738381 Msa0425350:CDS 30.0%
AATAACCAAGGAAGTAATTG+CGG + chr3_2:75738467-75738486 None:intergenic 30.0%
CATGGTACAATATCAAAAGT+AGG + chr3_2:75738653-75738672 None:intergenic 30.0%
AATTTGACTGCATCATATCA+TGG + chr3_2:75738671-75738690 None:intergenic 30.0%
! ATTTTCGCAGACCACAAATT+CGG - chr3_2:75733243-75733262 Msa0425350:three_prime_UTR 35.0%
TTGTTCTTTCGTTCGTTCAA+AGG - chr3_2:75733313-75733332 Msa0425350:three_prime_UTR 35.0%
AAAGAGATTGCTAAACGTCT+TGG - chr3_2:75733482-75733501 Msa0425350:CDS 35.0%
!! AAATTATGCTAGTCTTAGGC+AGG + chr3_2:75733614-75733633 None:intergenic 35.0%
! TTTATTAGGGATGAGAGCAT+AGG - chr3_2:75733631-75733650 Msa0425350:intron 35.0%
! GAAACTGAAGCACTAATTCT+AGG - chr3_2:75733686-75733705 Msa0425350:intron 35.0%
CTAATTCTAGGCCTAATTTC+GGG - chr3_2:75733698-75733717 Msa0425350:intron 35.0%
!!! GCATAGGATAGTTTTATGCT+TGG + chr3_2:75733899-75733918 None:intergenic 35.0%
AGCATAAAACTATCCTATGC+GGG - chr3_2:75733899-75733918 Msa0425350:intron 35.0%
!!! TGGTTTTATGCAAAAACTCC+AGG + chr3_2:75733926-75733945 None:intergenic 35.0%
GGAGATAAGTTAGCATAGAA+TGG + chr3_2:75733946-75733965 None:intergenic 35.0%
GTCAGGATTTATAACATCAC+AGG + chr3_2:75734035-75734054 None:intergenic 35.0%
AGTCAAATTCTACATCGATG+TGG + chr3_2:75734057-75734076 None:intergenic 35.0%
GTAGAATTTGACTCTATTGG+GGG - chr3_2:75734064-75734083 Msa0425350:CDS 35.0%
AAACTTCTTGGACCACAAAA+GGG - chr3_2:75734163-75734182 Msa0425350:CDS 35.0%
! GAGCAGTTTTCATTAATGTG+AGG - chr3_2:75734254-75734273 Msa0425350:intron 35.0%
TATCAAACCTGATGAGCAAA+TGG - chr3_2:75734278-75734297 Msa0425350:intron 35.0%
! AACACACTTACCAAGCTTTT+GGG + chr3_2:75734314-75734333 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+CGG - chr3_2:75734395-75734414 Msa0425350:CDS 35.0%
TATGCGAGTGTATAAAAGCT+TGG - chr3_2:75734582-75734601 Msa0425350:intron 35.0%
AAAGAAACTATGTTGGTCGT+TGG + chr3_2:75734763-75734782 None:intergenic 35.0%
CTCAGCAAAAGAAACTATGT+TGG + chr3_2:75734770-75734789 None:intergenic 35.0%
! CATAGTTTCTTTTGCTGAGA+AGG - chr3_2:75734771-75734790 Msa0425350:intron 35.0%
TATATTGTGCCTTTACCACT+GGG + chr3_2:75734844-75734863 None:intergenic 35.0%
ATATATTGTGCCTTTACCAC+TGG + chr3_2:75734845-75734864 None:intergenic 35.0%
AATCAAGCATAGCAGAGATA+AGG - chr3_2:75734912-75734931 Msa0425350:intron 35.0%
!!! AGTTTCCACCCTCTTTTTTA+CGG + chr3_2:75734987-75735006 None:intergenic 35.0%
TAAAAAAGAGGGTGGAAACT+AGG - chr3_2:75734987-75735006 Msa0425350:intron 35.0%
AGTAAGAAGAGTAGATCAGA+TGG - chr3_2:75735054-75735073 Msa0425350:intron 35.0%
! AAGCTAATTTGCCTTGAGAT+TGG - chr3_2:75735297-75735316 Msa0425350:intron 35.0%
ACAAGCATAAATAGGACACA+GGG + chr3_2:75735414-75735433 None:intergenic 35.0%
TACAAGCATAAATAGGACAC+AGG + chr3_2:75735415-75735434 None:intergenic 35.0%
TGTACGTTACTGTAGGAATA+TGG - chr3_2:75735586-75735605 Msa0425350:intron 35.0%
! GGATGTGGGTTTTTATATGT+TGG + chr3_2:75735772-75735791 None:intergenic 35.0%
ACATATAAAAACCCACATCC+AGG - chr3_2:75735772-75735791 Msa0425350:intron 35.0%
TGATCGTGAAAAAGGTTAAC+AGG + chr3_2:75735955-75735974 None:intergenic 35.0%
CGTGAATCAAGATTGTAAGA+AGG - chr3_2:75735985-75736004 Msa0425350:intron 35.0%
!!! TGTGATGGCAGAGATTTTTT+GGG + chr3_2:75736055-75736074 None:intergenic 35.0%
!!! ATGTGATGGCAGAGATTTTT+TGG + chr3_2:75736056-75736075 None:intergenic 35.0%
ATAGATGAAGTAGCATGTGA+TGG + chr3_2:75736070-75736089 None:intergenic 35.0%
ACAATAGCCAATCACAAACA+GGG + chr3_2:75736426-75736445 None:intergenic 35.0%
ATCACCATTAGATGAACAGA+TGG + chr3_2:75736683-75736702 None:intergenic 35.0%
GATGGATAACAACCTTACAT+TGG - chr3_2:75736715-75736734 Msa0425350:intron 35.0%
! AAGCTCATTTTCCCAATGTA+AGG + chr3_2:75736730-75736749 None:intergenic 35.0%
AAATAGATGGATGGAAGAAG+CGG + chr3_2:75736796-75736815 None:intergenic 35.0%
! AATGGCCTTAAATAGATGGA+TGG + chr3_2:75736805-75736824 None:intergenic 35.0%
! GTCAAATGGCCTTAAATAGA+TGG + chr3_2:75736809-75736828 None:intergenic 35.0%
CATATATACACTCCTCAAGA+AGG + chr3_2:75737006-75737025 None:intergenic 35.0%
TTATAGAACCAATACAGGAG+TGG + chr3_2:75737040-75737059 None:intergenic 35.0%
ACAGTAGATTAGCAAATGTG+TGG - chr3_2:75737062-75737081 Msa0425350:intron 35.0%
AATATTTGTCTGTTCTGCAG+TGG - chr3_2:75737301-75737320 Msa0425350:intron 35.0%
!!! CGATGAAGTAGACAGTTTTT+TGG - chr3_2:75737373-75737392 Msa0425350:intron 35.0%
ACTTAAAAACTTACGATCGG+TGG + chr3_2:75737474-75737493 None:intergenic 35.0%
!! TTGCTTCATCAAGTTCTGAA+GGG + chr3_2:75737639-75737658 None:intergenic 35.0%
! ATTGCTTCATCAAGTTCTGA+AGG + chr3_2:75737640-75737659 None:intergenic 35.0%
TATCCAATTTCAAAGGCTTG+AGG + chr3_2:75737676-75737695 None:intergenic 35.0%
GTCTGGATATCCAATTTCAA+AGG + chr3_2:75737683-75737702 None:intergenic 35.0%
TTGAAATTGGATATCCAGAC+CGG - chr3_2:75737683-75737702 Msa0425350:CDS 35.0%
ACTGCATAATGAGAAGAAAG+GGG - chr3_2:75737861-75737880 Msa0425350:intron 35.0%
! AAGATCAATTTGTGATGACG+TGG - chr3_2:75738108-75738127 Msa0425350:intron 35.0%
!!! TTTTTTCATATCATGAGCGG+TGG - chr3_2:75738146-75738165 Msa0425350:intron 35.0%
TTTAATCCTGAGCATCTACT+TGG + chr3_2:75738398-75738417 None:intergenic 35.0%
TTTGGGAACTAGAATAACCA+AGG + chr3_2:75738479-75738498 None:intergenic 35.0%
TGCATGAAATTCTGAGCTAA+AGG + chr3_2:75738542-75738561 None:intergenic 35.0%
GTACAATATCAAAAGTAGGG+CGG + chr3_2:75738649-75738668 None:intergenic 35.0%
TTTCGTTCGTTCAAAGGACA+TGG - chr3_2:75733319-75733338 Msa0425350:three_prime_UTR 40.0%
TTCGTTCGTTCAAAGGACAT+GGG - chr3_2:75733320-75733339 Msa0425350:three_prime_UTR 40.0%
ACAAGACCTGTTGTTATACG+CGG - chr3_2:75733367-75733386 Msa0425350:three_prime_UTR 40.0%
!! AAGTTACTGGGTATTGGTCA+CGG - chr3_2:75733403-75733422 Msa0425350:three_prime_UTR 40.0%
TTCTTCGATGATTCACGGTT+CGG + chr3_2:75733446-75733465 None:intergenic 40.0%
AATGGGTACCTCATAGGAAT+TGG + chr3_2:75733525-75733544 None:intergenic 40.0%
!! ATGAGAGCATAGGTTGGTTT+CGG - chr3_2:75733641-75733660 Msa0425350:intron 40.0%
TCGGGCTGAAAATTGTCAAA+CGG - chr3_2:75733660-75733679 Msa0425350:intron 40.0%
GCTGAAAATTGTCAAACGGA+TGG - chr3_2:75733664-75733683 Msa0425350:intron 40.0%
ACACATTTCAGCCCGAAATT+AGG + chr3_2:75733712-75733731 None:intergenic 40.0%
TAGTTGCATAGAGCAACACA+AGG - chr3_2:75733741-75733760 Msa0425350:intron 40.0%
TTGCGCTCTTTACTGTATAC+AGG - chr3_2:75734000-75734019 Msa0425350:CDS 40.0%
AATTCTACATCGATGTGGTC+AGG + chr3_2:75734052-75734071 None:intergenic 40.0%
! TTTTCGCATGGCAAACTTCT+TGG - chr3_2:75734151-75734170 Msa0425350:CDS 40.0%
CAAACTTCTTGGACCACAAA+AGG - chr3_2:75734162-75734181 Msa0425350:CDS 40.0%
AACTTCTTGGACCACAAAAG+GGG - chr3_2:75734164-75734183 Msa0425350:CDS 40.0%
AACCTGATGAGCAAATGGTT+TGG - chr3_2:75734283-75734302 Msa0425350:intron 40.0%
ACCTGATGAGCAAATGGTTT+GGG - chr3_2:75734284-75734303 Msa0425350:intron 40.0%
! CAACACACTTACCAAGCTTT+TGG + chr3_2:75734315-75734334 None:intergenic 40.0%
GCATAATATATGCAAGGTCC+GGG - chr3_2:75734396-75734415 Msa0425350:CDS 40.0%
CATAATATATGCAAGGTCCG+GGG - chr3_2:75734397-75734416 Msa0425350:CDS 40.0%
!!! ATTTTTTTTGGTGGTGGCCA+GGG + chr3_2:75734429-75734448 None:intergenic 40.0%
!!! TATTTTTTTTGGTGGTGGCC+AGG + chr3_2:75734430-75734449 None:intergenic 40.0%
TGGTATCACTTGCAGTTGTA+AGG - chr3_2:75734696-75734715 Msa0425350:intron 40.0%
TCAAATACCATTTAGCCCAG+TGG - chr3_2:75734826-75734845 Msa0425350:intron 40.0%
! TTTTGTATGGGACAGAGTGT+TGG - chr3_2:75734864-75734883 Msa0425350:intron 40.0%
! TTTGTATGGGACAGAGTGTT+GGG - chr3_2:75734865-75734884 Msa0425350:intron 40.0%
GAGATAAGGATACTGTGCTT+AGG - chr3_2:75734926-75734945 Msa0425350:intron 40.0%
ATAAGGATACTGTGCTTAGG+TGG - chr3_2:75734929-75734948 Msa0425350:intron 40.0%
GTACTCATAGTAGGAGAGTT+GGG - chr3_2:75734951-75734970 Msa0425350:intron 40.0%
TACTCATAGTAGGAGAGTTG+GGG - chr3_2:75734952-75734971 Msa0425350:intron 40.0%
TAGCACTCACCGTAAAAAAG+AGG - chr3_2:75734975-75734994 Msa0425350:intron 40.0%
AGCACTCACCGTAAAAAAGA+GGG - chr3_2:75734976-75734995 Msa0425350:intron 40.0%
AAGAAGAGTAGATCAGATGG+AGG - chr3_2:75735057-75735076 Msa0425350:intron 40.0%
AATCACATCCCTAGAGACAA+AGG - chr3_2:75735082-75735101 Msa0425350:intron 40.0%
! TTGGTCTTCCTTTGTCTCTA+GGG + chr3_2:75735093-75735112 None:intergenic 40.0%
!! ATTGGTCTTCCTTTGTCTCT+AGG + chr3_2:75735094-75735113 None:intergenic 40.0%
! AAGCCTTATCACAGTATGTG+GGG + chr3_2:75735221-75735240 None:intergenic 40.0%
! CAAGCCTTATCACAGTATGT+GGG + chr3_2:75735222-75735241 None:intergenic 40.0%
!! GCAATGAGTTTGTTGCAGAA+CGG + chr3_2:75735364-75735383 None:intergenic 40.0%
AAGCATAAATAGGACACAGG+GGG + chr3_2:75735412-75735431 None:intergenic 40.0%
CAAGCATAAATAGGACACAG+GGG + chr3_2:75735413-75735432 None:intergenic 40.0%
!!! TCCAGCTTTTAGAGCTATGA+GGG + chr3_2:75735537-75735556 None:intergenic 40.0%
!!! TTCCAGCTTTTAGAGCTATG+AGG + chr3_2:75735538-75735557 None:intergenic 40.0%
! AACTGTGGTCAATTTGGGTT+TGG - chr3_2:75735715-75735734 Msa0425350:intron 40.0%
! TATGTTGGGTCTGTTTCTCT+CGG + chr3_2:75735757-75735776 None:intergenic 40.0%
TCTCTCTCTCTCTCATCTTT+GGG + chr3_2:75735920-75735939 None:intergenic 40.0%
ATCTATGCTTGACCACACTA+GGG - chr3_2:75736084-75736103 Msa0425350:intron 40.0%
GAGTGTCACATGTAACATTG+TGG + chr3_2:75736114-75736133 None:intergenic 40.0%
CAATGTTACATGTGACACTC+AGG - chr3_2:75736114-75736133 Msa0425350:intron 40.0%
!! AAAAGCATTTGTCACCTGGT+GGG - chr3_2:75736231-75736250 Msa0425350:intron 40.0%
!! GGTGTTATTAAAATCCCACC+AGG + chr3_2:75736248-75736267 None:intergenic 40.0%
!! GGTGGGATTTTAATAACACC+AGG - chr3_2:75736248-75736267 Msa0425350:intron 40.0%
AATAGCCAATCACAAACAGG+GGG + chr3_2:75736424-75736443 None:intergenic 40.0%
CAATAGCCAATCACAAACAG+GGG + chr3_2:75736425-75736444 None:intergenic 40.0%
CACAATAGCCAATCACAAAC+AGG + chr3_2:75736427-75736446 None:intergenic 40.0%
! CTGTTTGTGATTGGCTATTG+TGG - chr3_2:75736425-75736444 Msa0425350:intron 40.0%
AATGGACGTCATATTAGGGT+TGG - chr3_2:75736485-75736504 Msa0425350:intron 40.0%
!! CATATTAGGGTTGGTTCTAG+TGG - chr3_2:75736494-75736513 Msa0425350:intron 40.0%
AAGGCCATCTGTTCATCTAA+TGG - chr3_2:75736676-75736695 Msa0425350:intron 40.0%
!!! GGTGATCTGTTGTTTTCAGA+TGG - chr3_2:75736697-75736716 Msa0425350:intron 40.0%
TTTGAAGGCTTGAAGCTGTT+CGG - chr3_2:75737092-75737111 Msa0425350:intron 40.0%
AGCAGTTAATAAAGGCAACC+TGG - chr3_2:75737141-75737160 Msa0425350:intron 40.0%
GAAACATAGTTAGGTATGCC+AGG + chr3_2:75737162-75737181 None:intergenic 40.0%
!!! TTCTGTTGCTTTTTTCAGCG+TGG - chr3_2:75737256-75737275 Msa0425350:intron 40.0%
! TTCAGCGTGGTTCTTTGTTT+AGG - chr3_2:75737269-75737288 Msa0425350:intron 40.0%
! AAACTGAGTTCATGGCTCTA+TGG - chr3_2:75737438-75737457 Msa0425350:intron 40.0%
! AACTGAGTTCATGGCTCTAT+GGG - chr3_2:75737439-75737458 Msa0425350:intron 40.0%
!! TTTGTTGTGTAGAGAGTGCT+CGG - chr3_2:75737587-75737606 Msa0425350:CDS 40.0%
!! CTTCCTCAAGCCTTTGAAAT+TGG - chr3_2:75737670-75737689 Msa0425350:CDS 40.0%
ATATATCAGCCCTCTCTTTC+CGG + chr3_2:75737705-75737724 None:intergenic 40.0%
AGAGAGGGCTGATATATTGA+AGG - chr3_2:75737708-75737727 Msa0425350:CDS 40.0%
ACATCAAGAACGTCGTTTCA+TGG - chr3_2:75738303-75738322 Msa0425350:intron 40.0%
AGTAATTGCGGTTGCAATCT+GGG + chr3_2:75738455-75738474 None:intergenic 40.0%
AAGTAATTGCGGTTGCAATC+TGG + chr3_2:75738456-75738475 None:intergenic 40.0%
!! TTCGCGTAAGTTTCTGAGGT+GGG + chr3_2:75733150-75733169 None:intergenic 45.0%
! TTTCGCGTAAGTTTCTGAGG+TGG + chr3_2:75733151-75733170 None:intergenic 45.0%
ACCTCAGAAACTTACGCGAA+AGG - chr3_2:75733150-75733169 Msa0425350:three_prime_UTR 45.0%
TCCTTTCGCGTAAGTTTCTG+AGG + chr3_2:75733154-75733173 None:intergenic 45.0%
TTGTGGTCTGCGAAAATCGA+GGG + chr3_2:75733240-75733259 None:intergenic 45.0%
TTTGTGGTCTGCGAAAATCG+AGG + chr3_2:75733241-75733260 None:intergenic 45.0%
GTATCCAACCACCGAATTTG+TGG + chr3_2:75733257-75733276 None:intergenic 45.0%
!! GGGAGGTTTTTCAGATACGA+AGG - chr3_2:75733340-75733359 Msa0425350:three_prime_UTR 45.0%
!! AGTTACTGGGTATTGGTCAC+GGG - chr3_2:75733404-75733423 Msa0425350:three_prime_UTR 45.0%
TCTTCGATGATTCACGGTTC+GGG + chr3_2:75733445-75733464 None:intergenic 45.0%
GAACCGTGAATCATCGAAGA+AGG - chr3_2:75733445-75733464 Msa0425350:CDS 45.0%
GAGCCTTCTTCGATGATTCA+CGG + chr3_2:75733451-75733470 None:intergenic 45.0%
! TTAGGGATGAGAGCATAGGT+TGG - chr3_2:75733635-75733654 Msa0425350:intron 45.0%
!! TGAGAGCATAGGTTGGTTTC+GGG - chr3_2:75733642-75733661 Msa0425350:intron 45.0%
AAACAAGTCTGGTCGTTGCA+GGG + chr3_2:75734134-75734153 None:intergenic 45.0%
AAAACAAGTCTGGTCGTTGC+AGG + chr3_2:75734135-75734154 None:intergenic 45.0%
TTGCCATGCGAAAACAAGTC+TGG + chr3_2:75734145-75734164 None:intergenic 45.0%
ACTTCTTGGACCACAAAAGG+GGG - chr3_2:75734165-75734184 Msa0425350:CDS 45.0%
! TACAACAGAACCCCCTTTTG+TGG + chr3_2:75734178-75734197 None:intergenic 45.0%
CAAAAGGGGGTTCTGTTGTA+TGG - chr3_2:75734178-75734197 Msa0425350:CDS 45.0%
AAAGCTATTGCCAAGGAGTC+TGG - chr3_2:75734232-75734251 Msa0425350:CDS 45.0%
CCTGATGAGCAAATGGTTTG+GGG - chr3_2:75734285-75734304 Msa0425350:intron 45.0%
CCAACTGAGCTAAGCTCAAA+AGG + chr3_2:75734366-75734385 None:intergenic 45.0%
! CCTTTTGAGCTTAGCTCAGT+TGG - chr3_2:75734363-75734382 Msa0425350:intron 45.0%
TTGAGCTTAGCTCAGTTGGT+AGG - chr3_2:75734367-75734386 Msa0425350:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG - chr3_2:75734368-75734387 Msa0425350:intron 45.0%
GTTTCACTCACTGTTACGAG+TGG - chr3_2:75734676-75734695 Msa0425350:intron 45.0%
ACCATTTAGCCCAGTGGTAA+AGG - chr3_2:75734832-75734851 Msa0425350:intron 45.0%
GCTTAGGTGGTACTCATAGT+AGG - chr3_2:75734942-75734961 Msa0425350:intron 45.0%
GGTACTCATAGTAGGAGAGT+TGG - chr3_2:75734950-75734969 Msa0425350:intron 45.0%
ACTCACCGTAAAAAAGAGGG+TGG - chr3_2:75734979-75734998 Msa0425350:intron 45.0%
CTTATCACAGTATGTGGGGT+CGG + chr3_2:75735217-75735236 None:intergenic 45.0%
! CCAAGCCTTATCACAGTATG+TGG + chr3_2:75735223-75735242 None:intergenic 45.0%
CCACATACTGTGATAAGGCT+TGG - chr3_2:75735220-75735239 Msa0425350:intron 45.0%
!!! GAGGAGTGTTTGCCCTTTTA+AGG + chr3_2:75735334-75735353 None:intergenic 45.0%
TAAAAGGGCAAACACTCCTC+AGG - chr3_2:75735334-75735353 Msa0425350:intron 45.0%
!!! TAGGTTGATTTTGAGGTGGG+CGG + chr3_2:75735513-75735532 None:intergenic 45.0%
!!! GGCTAGGTTGATTTTGAGGT+GGG + chr3_2:75735516-75735535 None:intergenic 45.0%
!!! TGAGGGCTAGGTTGATTTTG+AGG + chr3_2:75735520-75735539 None:intergenic 45.0%
!!! CTTTTAGAGCTATGAGGGCT+AGG + chr3_2:75735532-75735551 None:intergenic 45.0%
GCTGTGTATGTCCTAAGCAA+AGG - chr3_2:75735650-75735669 Msa0425350:intron 45.0%
! GGTTTGGCTCATTAGCCATT+AGG - chr3_2:75735731-75735750 Msa0425350:intron 45.0%
AACAAATGGAGCCTGGATGT+GGG + chr3_2:75735786-75735805 None:intergenic 45.0%
GAAGAACAACAAATGGAGCC+TGG + chr3_2:75735793-75735812 None:intergenic 45.0%
TGTGAGATTCTGTTGTAGCC+TGG - chr3_2:75735832-75735851 Msa0425350:intron 45.0%
GTGAGATTCTGTTGTAGCCT+GGG - chr3_2:75735833-75735852 Msa0425350:intron 45.0%
TGAGATTCTGTTGTAGCCTG+GGG - chr3_2:75735834-75735853 Msa0425350:intron 45.0%
CTCTCTCTCTCTCTCATCTT+TGG + chr3_2:75735921-75735940 None:intergenic 45.0%
CGTGATCGTGATCGTGAAAA+AGG + chr3_2:75735963-75735982 None:intergenic 45.0%
!!! TTTTTGGGTCACGGGTATTG+CGG + chr3_2:75736040-75736059 None:intergenic 45.0%
!!! GCAGAGATTTTTTGGGTCAC+GGG + chr3_2:75736048-75736067 None:intergenic 45.0%
!!! GGCAGAGATTTTTTGGGTCA+CGG + chr3_2:75736049-75736068 None:intergenic 45.0%
CATCTATGCTTGACCACACT+AGG - chr3_2:75736083-75736102 Msa0425350:intron 45.0%
CATTGTGGTTAACCCTAGTG+TGG + chr3_2:75736099-75736118 None:intergenic 45.0%
!! GCAGAAAAGCATTTGTCACC+TGG - chr3_2:75736227-75736246 Msa0425350:intron 45.0%
!! GAAAAGCATTTGTCACCTGG+TGG - chr3_2:75736230-75736249 Msa0425350:intron 45.0%
! TGTGATTGGCTATTGTGGTC+AGG - chr3_2:75736430-75736449 Msa0425350:intron 45.0%
! GTGATTGGCTATTGTGGTCA+GGG - chr3_2:75736431-75736450 Msa0425350:intron 45.0%
CTATTGTGGTCAGGGATCTA+GGG - chr3_2:75736439-75736458 Msa0425350:intron 45.0%
AGAACACCAGCACTCGATAA+GGG + chr3_2:75736594-75736613 None:intergenic 45.0%
AAGAACACCAGCACTCGATA+AGG + chr3_2:75736595-75736614 None:intergenic 45.0%
CAAACTCTCAGTCTGCTTGA+TGG - chr3_2:75736651-75736670 Msa0425350:intron 45.0%
! CTCAGTCTGCTTGATGGATA+AGG - chr3_2:75736657-75736676 Msa0425350:intron 45.0%
TCGTTGCAAGATCCTTCTTG+AGG - chr3_2:75736991-75737010 Msa0425350:intron 45.0%
!! TTGTTGTGTAGAGAGTGCTC+GGG - chr3_2:75737588-75737607 Msa0425350:CDS 45.0%
ATATCCAGACCGGAAAGAGA+GGG - chr3_2:75737693-75737712 Msa0425350:CDS 45.0%
GGTTATCTTAAAGGGCGAGA+AGG - chr3_2:75737729-75737748 Msa0425350:CDS 45.0%
GGTTTATGCAAGGGTTACAC+TGG - chr3_2:75737784-75737803 Msa0425350:CDS 45.0%
TGTCTTCCGCGAAGTAGAAA+GGG + chr3_2:75738253-75738272 None:intergenic 45.0%
ATGTCTTCCGCGAAGTAGAA+AGG + chr3_2:75738254-75738273 None:intergenic 45.0%
TTCTACTTCGCGGAAGACAT+CGG - chr3_2:75738254-75738273 Msa0425350:intron 45.0%
!! TCAGGTTGAAGCTGCAATCA+GGG - chr3_2:75738341-75738360 Msa0425350:CDS 45.0%
TCACATCCAAGTAGATGCTC+AGG - chr3_2:75738389-75738408 Msa0425350:CDS 45.0%
TGCAACCGCAATTACTTCCT+TGG - chr3_2:75738459-75738478 Msa0425350:CDS 45.0%
TTCTGAGCTAAAGGCAACAC+TGG + chr3_2:75738533-75738552 None:intergenic 45.0%
TGTGGTCTGCGAAAATCGAG+GGG + chr3_2:75733239-75733258 None:intergenic 50.0%
TTCGCAGACCACAAATTCGG+TGG - chr3_2:75733246-75733265 Msa0425350:three_prime_UTR 50.0%
! CAGACCACAAATTCGGTGGT+TGG - chr3_2:75733250-75733269 Msa0425350:three_prime_UTR 50.0%
GTTCGTTCAAAGGACATGGG+AGG - chr3_2:75733323-75733342 Msa0425350:three_prime_UTR 50.0%
ACCTGTTGTTATACGCGGCT+AGG - chr3_2:75733372-75733391 Msa0425350:three_prime_UTR 50.0%
CCTGTTGTTATACGCGGCTA+GGG - chr3_2:75733373-75733392 Msa0425350:three_prime_UTR 50.0%
GGCGCTAAGTTACTGGGTAT+TGG - chr3_2:75733397-75733416 Msa0425350:three_prime_UTR 50.0%
AAACTATCCTATGCGGGACC+TGG - chr3_2:75733905-75733924 Msa0425350:intron 50.0%
AAAAACTCCAGGTCCCGCAT+AGG + chr3_2:75733915-75733934 None:intergenic 50.0%
AACAAGTCTGGTCGTTGCAG+GGG + chr3_2:75734133-75734152 None:intergenic 50.0%
!! CGACCAGACTTGTTTTCGCA+TGG - chr3_2:75734139-75734158 Msa0425350:CDS 50.0%
GTTCTGTTGTATGGACCTCC+TGG - chr3_2:75734187-75734206 Msa0425350:CDS 50.0%
! GGCAATAGCTTTTGCGAGCA+TGG + chr3_2:75734224-75734243 None:intergenic 50.0%
GCTCGCAAAAGCTATTGCCA+AGG - chr3_2:75734225-75734244 Msa0425350:CDS 50.0%
GAAAACTGCTCCAGACTCCT+TGG + chr3_2:75734245-75734264 None:intergenic 50.0%
CCCCAAACCATTTGCTCATC+AGG + chr3_2:75734288-75734307 None:intergenic 50.0%
TTTGGGGATGCCCAAAAGCT+TGG - chr3_2:75734301-75734320 Msa0425350:intron 50.0%
GCCTTTACCACTGGGCTAAA+TGG + chr3_2:75734836-75734855 None:intergenic 50.0%
AGAGGGTGGAAACTAGGCTT+AGG - chr3_2:75734993-75735012 Msa0425350:intron 50.0%
CGACCCCACATACTGTGATA+AGG - chr3_2:75735215-75735234 Msa0425350:intron 50.0%
AAATAGGACACAGGGGGAGA+GGG + chr3_2:75735406-75735425 None:intergenic 50.0%
TAAATAGGACACAGGGGGAG+AGG + chr3_2:75735407-75735426 None:intergenic 50.0%
!!! GGGCTAGGTTGATTTTGAGG+TGG + chr3_2:75735517-75735536 None:intergenic 50.0%
!! GCCCTCATAGCTCTAAAAGC+TGG - chr3_2:75735533-75735552 Msa0425350:intron 50.0%
GCAGATCAAGCCCAAGCAAA+TGG + chr3_2:75735632-75735651 None:intergenic 50.0%
! GTCTGTTTCTCTCGGCCTAA+TGG + chr3_2:75735749-75735768 None:intergenic 50.0%
CAACAAATGGAGCCTGGATG+TGG + chr3_2:75735787-75735806 None:intergenic 50.0%
GAGATTCTGTTGTAGCCTGG+GGG - chr3_2:75735835-75735854 Msa0425350:intron 50.0%
CAAGACAAAGCAAGGCAACC+TGG + chr3_2:75736269-75736288 None:intergenic 50.0%
TCTCTCCCCCTGTTTGTGAT+TGG - chr3_2:75736416-75736435 Msa0425350:intron 50.0%
GCTATTGTGGTCAGGGATCT+AGG - chr3_2:75736438-75736457 Msa0425350:intron 50.0%
TGAACACCCTTATCGAGTGC+TGG - chr3_2:75736585-75736604 Msa0425350:intron 50.0%
AGTGATGGCCACTCCTGTAT+TGG - chr3_2:75737029-75737048 Msa0425350:intron 50.0%
GAAGCTGTTCGGCTGCATAT+AGG - chr3_2:75737103-75737122 Msa0425350:intron 50.0%
AGTGGCTGCCGTATTTAGCT+TGG - chr3_2:75737319-75737338 Msa0425350:intron 50.0%
GCGTCGTTCATCAGATCATG+AGG - chr3_2:75737400-75737419 Msa0425350:intron 50.0%
! GAGTTCATGGCTCTATGGGA+TGG - chr3_2:75737443-75737462 Msa0425350:intron 50.0%
!! TGTAGAGAGTGCTCGGGTTA+TGG - chr3_2:75737594-75737613 Msa0425350:CDS 50.0%
GATATCCAGACCGGAAAGAG+AGG - chr3_2:75737692-75737711 Msa0425350:CDS 50.0%
ACCTTTGTCGCAGGCAGATT+TGG - chr3_2:75738221-75738240 Msa0425350:intron 50.0%
TCCAAATCTGCCTGCGACAA+AGG + chr3_2:75738225-75738244 None:intergenic 50.0%
AGAAGGCCCTTTCTACTTCG+CGG - chr3_2:75738244-75738263 Msa0425350:intron 50.0%
!! CTCAGGTTGAAGCTGCAATC+AGG - chr3_2:75738340-75738359 Msa0425350:CDS 50.0%
CCCTAGCCGCGTATAACAAC+AGG + chr3_2:75733376-75733395 None:intergenic 55.0%
GTTGTTATACGCGGCTAGGG+CGG - chr3_2:75733376-75733395 Msa0425350:three_prime_UTR 55.0%
TAGGGCGGCGCTAAGTTACT+GGG - chr3_2:75733391-75733410 Msa0425350:three_prime_UTR 55.0%
! CACGGTTCGGGTCGAGATAA+CGG + chr3_2:75733433-75733452 None:intergenic 55.0%
CCCTCACGCGCACAAAGATT+GGG + chr3_2:75733818-75733837 None:intergenic 55.0%
CCCAATCTTTGTGCGCGTGA+GGG - chr3_2:75733815-75733834 Msa0425350:intron 55.0%
CCAATCTTTGTGCGCGTGAG+GGG - chr3_2:75733816-75733835 Msa0425350:intron 55.0%
TTGTATGGACCTCCTGGCAC+TGG - chr3_2:75734193-75734212 Msa0425350:CDS 55.0%
TGTATGGACCTCCTGGCACT+GGG - chr3_2:75734194-75734213 Msa0425350:CDS 55.0%
! ATGGTTTTCCCAGTGCCAGG+AGG + chr3_2:75734205-75734224 None:intergenic 55.0%
! AGCATGGTTTTCCCAGTGCC+AGG + chr3_2:75734208-75734227 None:intergenic 55.0%
GTTGCAGAACGGAAAGCCTG+AGG + chr3_2:75735353-75735372 None:intergenic 55.0%
TTCATGCATCTCTCTCCCCC+AGG + chr3_2:75735853-75735872 None:intergenic 55.0%
GATGTGCAAACAGCTCGCAC+AGG - chr3_2:75735888-75735907 Msa0425350:intron 55.0%
ACTCACCGGCAGTTAGTGGA+CGG + chr3_2:75736014-75736033 None:intergenic 55.0%
GTCAACTCACCGGCAGTTAG+TGG + chr3_2:75736018-75736037 None:intergenic 55.0%
! GGGTATTGCGGTCAACTCAC+CGG + chr3_2:75736028-75736047 None:intergenic 55.0%
GGAACCTAGACCTTTGTCGC+AGG - chr3_2:75738212-75738231 Msa0425350:intron 55.0%
TCTGCCTGCGACAAAGGTCT+AGG + chr3_2:75738219-75738238 None:intergenic 55.0%
GTCGCAGGCAGATTTGGAGA+AGG - chr3_2:75738227-75738246 Msa0425350:intron 55.0%
ACGTCGTTTCATGGCGAGTC+AGG - chr3_2:75738312-75738331 Msa0425350:intron 55.0%
TGGCGAGTCAGGTGATTCTC+AGG - chr3_2:75738323-75738342 Msa0425350:intron 55.0%
CTAGGGCGGCGCTAAGTTAC+TGG - chr3_2:75733390-75733409 Msa0425350:three_prime_UTR 60.0%
GCCCAATCTTTGTGCGCGTG+AGG - chr3_2:75733814-75733833 Msa0425350:intron 60.0%
CCCCTCACGCGCACAAAGAT+TGG + chr3_2:75733819-75733838 None:intergenic 60.0%
! CTCACCGGCAGTTAGTGGAC+GGG + chr3_2:75736013-75736032 None:intergenic 60.0%
TCAGCCCTCTCTTTCCGGTC+TGG + chr3_2:75737700-75737719 None:intergenic 60.0%
AAGGTCCGGGGCTCAAACCC+TGG - chr3_2:75734409-75734428 Msa0425350:CDS 65.0%
GGCACCCGTCCACTAACTGC+CGG - chr3_2:75736006-75736025 Msa0425350:intron 65.0%
GGTGGCCAGGGTTTGAGCCC+CGG + chr3_2:75734417-75734436 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 75733141 75738720 75733141 ID=Msa0425350;Name=Msa0425350
chr3_2 mRNA 75733141 75738720 75733141 ID=Msa0425350-mRNA-1;Parent=Msa0425350;Name=Msa0425350-mRNA-1;_AED=0.29;_eAED=0.29;_QI=197|1|1|1|1|1|5|304|385
chr3_2 exon 75733141 75733648 75733141 ID=Msa0425350-mRNA-1:exon:19459;Parent=Msa0425350-mRNA-1
chr3_2 exon 75733967 75734262 75733967 ID=Msa0425350-mRNA-1:exon:19458;Parent=Msa0425350-mRNA-1
chr3_2 exon 75734382 75734540 75734382 ID=Msa0425350-mRNA-1:exon:19457;Parent=Msa0425350-mRNA-1
chr3_2 exon 75737539 75737839 75737539 ID=Msa0425350-mRNA-1:exon:19456;Parent=Msa0425350-mRNA-1
chr3_2 exon 75738326 75738720 75738326 ID=Msa0425350-mRNA-1:exon:19455;Parent=Msa0425350-mRNA-1
chr3_2 five_prime_UTR 75738524 75738720 75738524 ID=Msa0425350-mRNA-1:five_prime_utr;Parent=Msa0425350-mRNA-1
chr3_2 CDS 75738326 75738523 75738326 ID=Msa0425350-mRNA-1:cds;Parent=Msa0425350-mRNA-1
chr3_2 CDS 75737539 75737839 75737539 ID=Msa0425350-mRNA-1:cds;Parent=Msa0425350-mRNA-1
chr3_2 CDS 75734382 75734540 75734382 ID=Msa0425350-mRNA-1:cds;Parent=Msa0425350-mRNA-1
chr3_2 CDS 75733967 75734262 75733967 ID=Msa0425350-mRNA-1:cds;Parent=Msa0425350-mRNA-1
chr3_2 CDS 75733445 75733648 75733445 ID=Msa0425350-mRNA-1:cds;Parent=Msa0425350-mRNA-1
chr3_2 three_prime_UTR 75733141 75733444 75733141 ID=Msa0425350-mRNA-1:three_prime_utr;Parent=Msa0425350-mRNA-1
Gene Sequence

>Msa0425350

ATGGGAGGTTTTTCAGATACGAAGGTTTTACAAGACCTGTTGTTATACGCGGCTAGGGCGGCGCTAAGTTACTGGGTATTGGTCACGGGTCTCCGTTATCTCGACCCGAACCGTGAATCATCGAAGAAGGCTCTTGAACAGAAGAAAGAGATTGCTAAACGTCTTGGTCGTCCTCTTATTCAAACCAATTCCTATGAGGATGTAATAGCCTGTGATGTTATAAATCCTGACCACATCGATGTAGAATTTGACTCTATTGGGGGTCTTGACACAATTAAACAAACTTTGTTTGAGCTTGTTATTCTACCCCTGCAACGACCAGACTTGTTTTCGCATGGCAAACTTCTTGGACCACAAAAGGGGGTTCTGTTGTATGGACCTCCTGGCACTGGGAAAACCATGCTCGCAAAAGCTATTGCCAAGGAGTCTGGAGCAGTTTTCATTAATGTGAGGATATCAAACCTGATGAGCAAATGGTTTGGGGATGCCCAAAAGCTTGTGGCTGCCGTATTTAGCTTGGCTCATAAACTTCAGCCATCCATTATATTCATCGATGAAGTAGACAGTTTTTTGGGTCAGCGTCGTTCATCAGATCATGAGGCTGTGTTAAACATGAAAACTGAGTTCATGGCTCTATGGGATGGATTCGCCACCGATCAGAGTGCTCGGGTTATGGTACTTGCAGCAACTAATCGCCCTTCAGAACTTGATGAAGCAATACTTCGGCGACTTCCTCAAGCCTTTGAAATTGGATATCCAGACCGGAAAGAGAGGGCTGATATATTGAAGGTTATCTTAAAGGGCGAGAAGGTTGAAGATAACATAGATTTCAGTTATATAGCTGGTTTATGCAAGGGTTACACTGGTTCAGATCTATTTGATCTTTGCAAGAAGGCCGCATATTTTCCTATTAGAGAAATACTGCATAATGAGAAGAAAGGGGAACAGTCCTGTGAACCTAGACCTTTGTCGCAGGCAGATTTGGAGAAGGCCCTTTCTACTTCGCGGAAGACATCGGTTGCTGCAAATGAATACAGTAGAATGACATCAAGAACGTCGTTTCATGGCGAGTCAGGTGATTCTCAGGTTGAAGCTGCAATCAGGGAATTATCTAAGATTATGGGGGTTTCTCACATCCAAGTAGATGCTCAGGATTAA
Protein sequence

>Msa0425350

MGGFSDTKVLQDLLLYAARAALSYWVLVTGLRYLDPNRESSKKALEQKKEIAKRLGRPLIQTNSYEDVIACDVINPDHIDVEFDSIGGLDTIKQTLFELVILPLQRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAHKLQPSIIFIDEVDSFLGQRRSSDHEAVLNMKTEFMALWDGFATDQSARVMVLAATNRPSELDEAILRRLPQAFEIGYPDRKERADILKVILKGEKVEDNIDFSYIAGLCKGYTGSDLFDLCKKAAYFPIREILHNEKKGEQSCEPRPLSQADLEKALSTSRKTSVAANEYSRMTSRTSFHGESGDSQVEAAIRELSKIMGVSHIQVDAQD*