AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0426460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0426460 MtrunA17_Chr3g0128471 91.829 257 16 3 1 254 1 255 7.45e-167 461
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0426460 AT4G19985.6 48.052 231 89 5 17 223 14 237 3.25e-67 208
Msa0426460 AT4G19985.1 48.052 231 89 5 17 223 14 237 3.25e-67 208
Msa0426460 AT4G19985.4 42.205 263 89 6 17 223 14 269 5.05e-60 191
Msa0426460 AT4G19985.2 39.881 168 70 5 17 160 14 174 1.60e-30 112
Msa0426460 AT4G19985.5 39.881 168 70 5 17 160 14 174 1.60e-30 112
Msa0426460 AT4G19985.3 39.881 168 70 5 17 160 14 174 1.60e-30 112
Msa0426460 AT4G19985.7 39.181 171 73 5 17 163 14 177 1.90e-30 112

Find 83 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTATTTATAAGAGAAATTT+TGG 0.134317 3_2:+76862584 Msa0426460:three_prime_UTR
TCCTATTTATAAGAGAAATT+TGG 0.153536 3_2:-76862667 None:intergenic
CGAAATCAATGGAATTAAAA+TGG 0.164701 3_2:+76860281 Msa0426460:CDS
CCAAAATTTCTCTTATAAAT+AGG 0.165614 3_2:-76862584 None:intergenic
GGTCGTGCTGTTTCTGATTT+TGG 0.179788 3_2:+76860661 Msa0426460:CDS
CATTTAGGATATACCGATTT+AGG 0.186285 3_2:-76862854 None:intergenic
TGGATTTGGTGGTGACATTT+TGG 0.201084 3_2:+76862344 Msa0426460:CDS
CCCAAATTTCTCTTATAAAT+AGG 0.204007 3_2:+76862666 Msa0426460:three_prime_UTR
CTGAAATCTTTCTCACATTT+AGG 0.216532 3_2:-76862869 None:intergenic
TGACGGTTTGCTCACTTTCC+TGG 0.239344 3_2:-76862410 None:intergenic
TTTGGAGATGTTGAGGATTA+AGG 0.248880 3_2:-76860402 None:intergenic
TCAACAAAAGTTATTGTATC+TGG 0.258639 3_2:+76862607 Msa0426460:three_prime_UTR
CAGGAGTGTCGGAGATATTA+AGG 0.273878 3_2:-76860468 None:intergenic
TGCAAATGGAGCAGAGGTTT+TGG 0.278048 3_2:-76860420 None:intergenic
CCTCACCACATTGATGTTGA+TGG 0.296205 3_2:+76860562 Msa0426460:CDS
CCTGAACGTGATTTGTTGAT+TGG 0.298630 3_2:+76860634 Msa0426460:CDS
CCTATTTATAAGAGAAATTT+GGG 0.322268 3_2:-76862666 None:intergenic
TCAACAAAAGTGGATGTATT+TGG 0.333075 3_2:-76862643 None:intergenic
ATTAAGGTGGTGTGGGTTAG+TGG 0.360151 3_2:-76860386 None:intergenic
AAAATTGTTGTTTAAGCAAC+CGG 0.364594 3_2:+76862541 Msa0426460:three_prime_UTR
TTGTTGATATCAACTGGTTC+AGG 0.374194 3_2:-76860487 None:intergenic
CGTGATTTGTTGATTGGGTT+TGG 0.384811 3_2:+76860640 Msa0426460:CDS
CGAAGCTTGTTGATATCAAC+TGG 0.398400 3_2:-76860493 None:intergenic
CTGAACGTGATTTGTTGATT+GGG 0.419104 3_2:+76860635 Msa0426460:CDS
TGCTTCTATATACGATGTTA+TGG 0.428860 3_2:+76860690 Msa0426460:CDS
GTACAGAGTATATCCTAAAT+CGG 0.430618 3_2:+76862841 Msa0426460:three_prime_UTR
CCAGAGGGAGTAACCTCTTC+CGG 0.431132 3_2:-76862560 None:intergenic
TATTCCATCCTTGAGGAGAA+TGG 0.433471 3_2:+76861309 Msa0426460:CDS
TCCTTGAGGAGAATGGGAAT+TGG 0.440922 3_2:+76861316 Msa0426460:CDS
CCGGAAGAGGTTACTCCCTC+TGG 0.452944 3_2:+76862560 Msa0426460:three_prime_UTR
ATTCCATCCTTGAGGAGAAT+GGG 0.454926 3_2:+76861310 Msa0426460:CDS
TTGTGTATATTCAACTGAGC+AGG 0.455019 3_2:+76862730 Msa0426460:three_prime_UTR
GTGTCGGAGATATTAAGGTT+GGG 0.458757 3_2:-76860463 None:intergenic
CCAATCAACAAATCACGTTC+AGG 0.463909 3_2:-76860634 None:intergenic
CCTCTCATCCTCTGAGCAAA+GGG 0.464970 3_2:-76862228 None:intergenic
GGAAATGAAAAGTGGGAGAA+GGG 0.466176 3_2:-76860365 None:intergenic
GAAATCAATGGAATTAAAAT+GGG 0.468872 3_2:+76860282 Msa0426460:CDS
AACAATAGCTTTCGGCCTGC+AGG 0.469985 3_2:-76862435 None:intergenic
AAATCACGTTCAGGAGAAAC+CGG 0.482910 3_2:-76860625 None:intergenic
TTTAAGGCTTGTGGATTTGG+TGG 0.483526 3_2:+76862333 Msa0426460:CDS
GAGCAAACCGTCACACCTGC+AGG 0.493036 3_2:+76862420 Msa0426460:CDS
GTTGTTTAAGCAACCGGAAG+AGG 0.493158 3_2:+76862547 Msa0426460:three_prime_UTR
TCCAATTCCCATTCTCCTCA+AGG 0.504293 3_2:-76861317 None:intergenic
GAAATTTGGGTCAACAAAAG+TGG 0.507540 3_2:-76862653 None:intergenic
GTGAAAAGAGTGGTTGCAAA+TGG 0.508457 3_2:-76860434 None:intergenic
GCGGAACCAACAATAGCTTT+CGG 0.512055 3_2:-76862443 None:intergenic
TGCAGGCCGAAAGCTATTGT+TGG 0.512613 3_2:+76862437 Msa0426460:CDS
AACTGTTTCATCAACAATCC+AGG 0.512965 3_2:+76862392 Msa0426460:CDS
ATCCATCCATCGAAAGTCGT+TGG 0.519423 3_2:+76860203 None:intergenic
TGTCGGAGATATTAAGGTTG+GGG 0.519931 3_2:-76860462 None:intergenic
ATGGTAACATTTACTCCCTC+CGG 0.522295 3_2:-76862690 None:intergenic
CTTTCGGCCTGCAGGTGTGA+CGG 0.523798 3_2:-76862427 None:intergenic
ACCTCTCATCCTCTGAGCAA+AGG 0.534812 3_2:-76862229 None:intergenic
CCCTTTGCTCAGAGGATGAG+AGG 0.537381 3_2:+76862228 Msa0426460:CDS
ATTTCTCTTATAAATAGGAC+CGG 0.540197 3_2:+76862671 Msa0426460:three_prime_UTR
CTCTTATAAATAGGACCAGA+GGG 0.542613 3_2:-76862575 None:intergenic
AGTGTCGGAGATATTAAGGT+TGG 0.549755 3_2:-76860464 None:intergenic
CTCTTATAAATAGGACCGGA+GGG 0.554392 3_2:+76862675 Msa0426460:three_prime_UTR
ATCAACTGGTTCAGGAGTGT+CGG 0.554412 3_2:-76860479 None:intergenic
TGTTGAGGATTAAGGTGGTG+TGG 0.555356 3_2:-76860394 None:intergenic
AACAGTTCTCGTGTACATCA+TGG 0.561270 3_2:-76862376 None:intergenic
GTTGAGGATTAAGGTGGTGT+GGG 0.570563 3_2:-76860393 None:intergenic
TGGAAATGAAAAGTGGGAGA+AGG 0.570598 3_2:-76860366 None:intergenic
ATTCCCATTCTCCTCAAGGA+TGG 0.579989 3_2:-76861313 None:intergenic
GGAGATGTTGAGGATTAAGG+TGG 0.587846 3_2:-76860399 None:intergenic
TGCAGGTTATTCCATCCTTG+AGG 0.587883 3_2:+76861302 Msa0426460:intron
ACTCAATATTATCATCCTTG+AGG 0.593636 3_2:-76862489 None:intergenic
GGGTTAGTGGAAATGAAAAG+TGG 0.602812 3_2:-76860373 None:intergenic
GACAGATTCAAGAATCCTCA+AGG 0.611144 3_2:+76862474 Msa0426460:CDS
TCTCTTATAAATAGGACCGG+AGG 0.614852 3_2:+76862674 Msa0426460:three_prime_UTR
TGTGTATATTCAACTGAGCA+GGG 0.620117 3_2:+76862731 Msa0426460:three_prime_UTR
GAAATGAAAAGTGGGAGAAG+GGG 0.622002 3_2:-76860364 None:intergenic
CATAGCAGCCCTTTGCTCAG+AGG 0.625766 3_2:+76862220 Msa0426460:CDS
TCTCTTATAAATAGGACCAG+AGG 0.626066 3_2:-76862576 None:intergenic
AGTGGTTGCAAATGGAGCAG+AGG 0.626606 3_2:-76860426 None:intergenic
TTTCGAAGCGAAAACTTCAG+TGG 0.633639 3_2:-76860263 None:intergenic
TTCTTGAATCTGTCAATCAG+AGG 0.641603 3_2:-76862465 None:intergenic
CCATCAACATCAATGTGGTG+AGG 0.651681 3_2:-76860562 None:intergenic
GGTTAGTGGAAATGAAAAGT+GGG 0.652172 3_2:-76860372 None:intergenic
TGGGGAATCTGTGAAAAGAG+TGG 0.656361 3_2:-76860444 None:intergenic
TTGAATCTGTCAATCAGAGG+CGG 0.671155 3_2:-76862462 None:intergenic
TGATTGTTAGAAAAGTTGTG+AGG 0.694957 3_2:+76861344 Msa0426460:CDS
TTAAACCATCAACATCAATG+TGG 0.739906 3_2:-76860567 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGAAAAATGTATAAATAA+AGG + chr3_2:76861753-76861772 Msa0426460:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr3_2:76861754-76861773 Msa0426460:intron 10.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr3_2:76861755-76861774 Msa0426460:intron 15.0%
!! TAATTAGAGTTATATTGTAT+TGG + chr3_2:76861818-76861837 Msa0426460:intron 15.0%
!! AATTAGAGTTATATTGTATT+GGG + chr3_2:76861819-76861838 Msa0426460:intron 15.0%
!! GAAATCAATGGAATTAAAAT+GGG + chr3_2:76860282-76860301 Msa0426460:CDS 20.0%
!!! TCTTTGTTTTGAAAAAATGT+AGG - chr3_2:76860730-76860749 None:intergenic 20.0%
!! CAAAATAACCAAAATAATGA+TGG - chr3_2:76860819-76860838 None:intergenic 20.0%
!!! TATTTTGGTTATTTTGTTTC+TGG + chr3_2:76860823-76860842 Msa0426460:intron 20.0%
!!! ATTTTGGTTATTTTGTTTCT+GGG + chr3_2:76860824-76860843 Msa0426460:intron 20.0%
!! ATTGTCAGTTATTGTAATTA+TGG - chr3_2:76860884-76860903 None:intergenic 20.0%
!!! TTTTTCCCTTTTTCAATATT+TGG + chr3_2:76861207-76861226 Msa0426460:intron 20.0%
!! AAAGTGGAATATATTGTATT+GGG + chr3_2:76861778-76861797 Msa0426460:intron 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr3_2:76861851-76861870 Msa0426460:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr3_2:76861888-76861907 Msa0426460:intron 20.0%
!! CCAAAATTTCTCTTATAAAT+AGG - chr3_2:76862587-76862606 None:intergenic 20.0%
!!! CCTATTTATAAGAGAAATTT+TGG + chr3_2:76862584-76862603 Msa0426460:three_prime_UTR 20.0%
!! ATTGTATCTGGTTAAAAAAT+TGG + chr3_2:76862619-76862638 Msa0426460:three_prime_UTR 20.0%
!! CCTATTTATAAGAGAAATTT+GGG - chr3_2:76862584-76862603 None:intergenic 20.0%
!! TCCTATTTATAAGAGAAATT+TGG - chr3_2:76862583-76862602 None:intergenic 20.0%
! CGAAATCAATGGAATTAAAA+TGG + chr3_2:76860281-76860300 Msa0426460:CDS 25.0%
! ATGAGTTCAATTTCATATCT+TGG + chr3_2:76860786-76860805 Msa0426460:intron 25.0%
!!! CTATAAGCTGTTTTCTATTT+TGG - chr3_2:76861087-76861106 None:intergenic 25.0%
! AATAAGTTGTTTATCCAAAC+AGG + chr3_2:76861140-76861159 Msa0426460:intron 25.0%
! ATAAGTTGTTTATCCAAACA+GGG + chr3_2:76861141-76861160 Msa0426460:intron 25.0%
!! ACATGTTTTTCATTAACAAC+AGG - chr3_2:76861183-76861202 None:intergenic 25.0%
! CAATGCCAAATATTGAAAAA+GGG - chr3_2:76861215-76861234 None:intergenic 25.0%
! TCAATGCCAAATATTGAAAA+AGG - chr3_2:76861216-76861235 None:intergenic 25.0%
!! ATCATTCATGAAGTTTTTGT+TGG + chr3_2:76861483-76861502 Msa0426460:intron 25.0%
! GAAAGTGGAATATATTGTAT+TGG + chr3_2:76861777-76861796 Msa0426460:intron 25.0%
!! TTGAAATGGCTCAATTATTT+TGG + chr3_2:76861865-76861884 Msa0426460:intron 25.0%
!! TGAAATGGCTCAATTATTTT+GGG + chr3_2:76861866-76861885 Msa0426460:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr3_2:76861887-76861906 Msa0426460:intron 25.0%
! TAAGTCAAATTAAACCTTGT+AGG + chr3_2:76862034-76862053 Msa0426460:intron 25.0%
! AATATAAAGGGTTGTGTATA+AGG + chr3_2:76862101-76862120 Msa0426460:intron 25.0%
! ATATAAAGGGTTGTGTATAA+GGG + chr3_2:76862102-76862121 Msa0426460:intron 25.0%
! AAGTTCCAAATATCTGAATA+TGG + chr3_2:76862158-76862177 Msa0426460:intron 25.0%
! ATAGACCATATTCAGATATT+TGG - chr3_2:76862166-76862185 None:intergenic 25.0%
!!! TTTTCTCAGGTTGTTTTTTA+AGG + chr3_2:76862317-76862336 Msa0426460:intron 25.0%
!!! AAAATTGTTGTTTAAGCAAC+CGG + chr3_2:76862541-76862560 Msa0426460:three_prime_UTR 25.0%
! TCAACAAAAGTTATTGTATC+TGG + chr3_2:76862607-76862626 Msa0426460:three_prime_UTR 25.0%
! CCCAAATTTCTCTTATAAAT+AGG + chr3_2:76862666-76862685 Msa0426460:three_prime_UTR 25.0%
! ATTTCTCTTATAAATAGGAC+CGG + chr3_2:76862671-76862690 Msa0426460:three_prime_UTR 25.0%
!!! TTACCATTTTTTGTCATTCT+TGG + chr3_2:76862706-76862725 Msa0426460:three_prime_UTR 25.0%
!! TTTTTGTTTGTGTGTGGTTT+TGG - chr3_2:76860332-76860351 None:intergenic 30.0%
TTAAACCATCAACATCAATG+TGG - chr3_2:76860570-76860589 None:intergenic 30.0%
TGCTTCTATATACGATGTTA+TGG + chr3_2:76860690-76860709 Msa0426460:CDS 30.0%
!!! GTTTTGAAAAAATGTAGGCA+AGG - chr3_2:76860725-76860744 None:intergenic 30.0%
! CAATTTCATATCTTGGTTCT+TGG + chr3_2:76860793-76860812 Msa0426460:intron 30.0%
! TTTCTGGGTTTTCTTAGTTT+TGG + chr3_2:76860839-76860858 Msa0426460:intron 30.0%
!! TTCTGGGTTTTCTTAGTTTT+GGG + chr3_2:76860840-76860859 Msa0426460:intron 30.0%
ACTAACTATTTATGCCTGTT+TGG + chr3_2:76860943-76860962 Msa0426460:intron 30.0%
TCAAATAAGTCAATCCAAAC+AGG - chr3_2:76860960-76860979 None:intergenic 30.0%
AAACAGTCTCACAATACTTA+TGG - chr3_2:76860995-76861014 None:intergenic 30.0%
!! TAAGTATTGTGAGACTGTTT+TGG + chr3_2:76860995-76861014 Msa0426460:intron 30.0%
CAGCTTATAGCTTATACAAT+AGG + chr3_2:76861097-76861116 Msa0426460:intron 30.0%
TATAAGATATAAGCCCTGTT+TGG - chr3_2:76861157-76861176 None:intergenic 30.0%
!! CAATATTTGGCATTGATTTG+AGG + chr3_2:76861220-76861239 Msa0426460:intron 30.0%
TGATTGTTAGAAAAGTTGTG+AGG + chr3_2:76861344-76861363 Msa0426460:CDS 30.0%
ATTGAATCATCACAGAAGAT+AGG - chr3_2:76861387-76861406 None:intergenic 30.0%
ATTAGATTCTCATCAGCAAA+AGG - chr3_2:76861463-76861482 None:intergenic 30.0%
! TTTTTGTTGGCATAGAGTTT+TGG + chr3_2:76861496-76861515 Msa0426460:intron 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr3_2:76861762-76861781 Msa0426460:intron 30.0%
TGCAATAAAAGCTGTCATAT+TGG + chr3_2:76861981-76862000 Msa0426460:intron 30.0%
GCAATAAAAGCTGTCATATT+GGG + chr3_2:76861982-76862001 Msa0426460:intron 30.0%
CTTGTAGGAGTTGAATATAA+GGG + chr3_2:76862049-76862068 Msa0426460:intron 30.0%
TTGTAGGAGTTGAATATAAG+GGG + chr3_2:76862050-76862069 Msa0426460:intron 30.0%
ATTGATCTTTAACCAGAGAT+GGG - chr3_2:76862133-76862152 None:intergenic 30.0%
TATTGATCTTTAACCAGAGA+TGG - chr3_2:76862134-76862153 None:intergenic 30.0%
TTGTTCATTATTCCTCTACA+TGG + chr3_2:76862251-76862270 Msa0426460:intron 30.0%
CATCAATTACTGTTCACAAA+GGG - chr3_2:76862288-76862307 None:intergenic 30.0%
ACATCAATTACTGTTCACAA+AGG - chr3_2:76862289-76862308 None:intergenic 30.0%
!!! TTTTTTAAGGCTTGTGGATT+TGG + chr3_2:76862330-76862349 Msa0426460:CDS 30.0%
ACTCAATATTATCATCCTTG+AGG - chr3_2:76862492-76862511 None:intergenic 30.0%
TCAACAAAAGTGGATGTATT+TGG - chr3_2:76862646-76862665 None:intergenic 30.0%
AAGCCAAGAATGACAAAAAA+TGG - chr3_2:76862712-76862731 None:intergenic 30.0%
GTACAGAGTATATCCTAAAT+CGG + chr3_2:76862841-76862860 Msa0426460:three_prime_UTR 30.0%
!! CATTTAGGATATACCGATTT+AGG - chr3_2:76862857-76862876 None:intergenic 30.0%
CTGAAATCTTTCTCACATTT+AGG - chr3_2:76862872-76862891 None:intergenic 30.0%
! AGTTTTCGCTTCGAAATCAA+TGG + chr3_2:76860270-76860289 Msa0426460:CDS 35.0%
!!! TAGCGTTTTTTGTTTGTGTG+TGG - chr3_2:76860338-76860357 None:intergenic 35.0%
GGTTAGTGGAAATGAAAAGT+GGG - chr3_2:76860375-76860394 None:intergenic 35.0%
TTTGGAGATGTTGAGGATTA+AGG - chr3_2:76860405-76860424 None:intergenic 35.0%
! TTGTTGATATCAACTGGTTC+AGG - chr3_2:76860490-76860509 None:intergenic 35.0%
!!! CATTGTTGATTTTTTCACGC+CGG + chr3_2:76860606-76860625 Msa0426460:CDS 35.0%
!! CTGAACGTGATTTGTTGATT+GGG + chr3_2:76860635-76860654 Msa0426460:CDS 35.0%
! GTTCTTGGCCATCATTATTT+TGG + chr3_2:76860808-76860827 Msa0426460:intron 35.0%
TTCTGTGATGATTCAATGCA+TGG + chr3_2:76861390-76861409 Msa0426460:intron 35.0%
! TGAAAGTGAGTATCTAGTTC+AGG - chr3_2:76861418-76861437 None:intergenic 35.0%
AATCTGTGTGAAAACCAAAC+TGG - chr3_2:76861734-76861753 None:intergenic 35.0%
AGAAAATGGGTCAGATATTC+CGG + chr3_2:76861901-76861920 Msa0426460:intron 35.0%
CCTTATATTCAACTCCTACA+AGG - chr3_2:76862051-76862070 None:intergenic 35.0%
CCTTGTAGGAGTTGAATATA+AGG + chr3_2:76862048-76862067 Msa0426460:intron 35.0%
GATAAAACTAGACCATGTAG+AGG - chr3_2:76862266-76862285 None:intergenic 35.0%
!!! AGGTTGTTTTTTAAGGCTTG+TGG + chr3_2:76862324-76862343 Msa0426460:intron 35.0%
AACTGTTTCATCAACAATCC+AGG + chr3_2:76862392-76862411 Msa0426460:CDS 35.0%
TTCTTGAATCTGTCAATCAG+AGG - chr3_2:76862468-76862487 None:intergenic 35.0%
CTCTTATAAATAGGACCAGA+GGG - chr3_2:76862578-76862597 None:intergenic 35.0%
TCTCTTATAAATAGGACCAG+AGG - chr3_2:76862579-76862598 None:intergenic 35.0%
GAAATTTGGGTCAACAAAAG+TGG - chr3_2:76862656-76862675 None:intergenic 35.0%
TTGTGTATATTCAACTGAGC+AGG + chr3_2:76862730-76862749 Msa0426460:three_prime_UTR 35.0%
TGTGTATATTCAACTGAGCA+GGG + chr3_2:76862731-76862750 Msa0426460:three_prime_UTR 35.0%
! TCGTTGGTTGCAGACAAAAA+TGG + chr3_2:76860219-76860238 Msa0426460:exon 40.0%
TTGGTTGCAGACAAAAATGG+CGG + chr3_2:76860222-76860241 Msa0426460:exon 40.0%
TTTCGAAGCGAAAACTTCAG+TGG - chr3_2:76860266-76860285 None:intergenic 40.0%
GAAATGAAAAGTGGGAGAAG+GGG - chr3_2:76860367-76860386 None:intergenic 40.0%
GGAAATGAAAAGTGGGAGAA+GGG - chr3_2:76860368-76860387 None:intergenic 40.0%
TGGAAATGAAAAGTGGGAGA+AGG - chr3_2:76860369-76860388 None:intergenic 40.0%
! GGGTTAGTGGAAATGAAAAG+TGG - chr3_2:76860376-76860395 None:intergenic 40.0%
GTGAAAAGAGTGGTTGCAAA+TGG - chr3_2:76860437-76860456 None:intergenic 40.0%
TGTCGGAGATATTAAGGTTG+GGG - chr3_2:76860465-76860484 None:intergenic 40.0%
GTGTCGGAGATATTAAGGTT+GGG - chr3_2:76860466-76860485 None:intergenic 40.0%
! AGTGTCGGAGATATTAAGGT+TGG - chr3_2:76860467-76860486 None:intergenic 40.0%
!! CGAAGCTTGTTGATATCAAC+TGG - chr3_2:76860496-76860515 None:intergenic 40.0%
CGGCGTGAAAAAATCAACAA+TGG - chr3_2:76860608-76860627 None:intergenic 40.0%
AAATCACGTTCAGGAGAAAC+CGG - chr3_2:76860628-76860647 None:intergenic 40.0%
CCAATCAACAAATCACGTTC+AGG - chr3_2:76860637-76860656 None:intergenic 40.0%
!! CCTGAACGTGATTTGTTGAT+TGG + chr3_2:76860634-76860653 Msa0426460:CDS 40.0%
!! CGTGATTTGTTGATTGGGTT+TGG + chr3_2:76860640-76860659 Msa0426460:CDS 40.0%
! TTGCGTTTTCCCATAGTTGA+CGG + chr3_2:76861253-76861272 Msa0426460:intron 40.0%
GAATAATGCCCGTCAACTAT+GGG - chr3_2:76861265-76861284 None:intergenic 40.0%
TGAATAATGCCCGTCAACTA+TGG - chr3_2:76861266-76861285 None:intergenic 40.0%
TATTCCATCCTTGAGGAGAA+TGG + chr3_2:76861309-76861328 Msa0426460:CDS 40.0%
ATTCCATCCTTGAGGAGAAT+GGG + chr3_2:76861310-76861329 Msa0426460:CDS 40.0%
CATCACAGAAGATAGGCAAA+AGG - chr3_2:76861380-76861399 None:intergenic 40.0%
! TCTACTATGAGGCACTAACA+CGG + chr3_2:76861557-76861576 Msa0426460:intron 40.0%
GTCGATGTGTAAGTGTGTAT+TGG - chr3_2:76861586-76861605 None:intergenic 40.0%
! CAAACTGGCTCAGATAAAAC+GGG - chr3_2:76861719-76861738 None:intergenic 40.0%
! CCAAACTGGCTCAGATAAAA+CGG - chr3_2:76861720-76861739 None:intergenic 40.0%
GAAAATGGGTCAGATATTCC+GGG + chr3_2:76861902-76861921 Msa0426460:intron 40.0%
!! GATGTTCTCGACTTTTTCTC+AGG + chr3_2:76862304-76862323 Msa0426460:intron 40.0%
! TTTAAGGCTTGTGGATTTGG+TGG + chr3_2:76862333-76862352 Msa0426460:CDS 40.0%
!!! TGGATTTGGTGGTGACATTT+TGG + chr3_2:76862344-76862363 Msa0426460:CDS 40.0%
AACAGTTCTCGTGTACATCA+TGG - chr3_2:76862379-76862398 None:intergenic 40.0%
TTGAATCTGTCAATCAGAGG+CGG - chr3_2:76862465-76862484 None:intergenic 40.0%
GACAGATTCAAGAATCCTCA+AGG + chr3_2:76862474-76862493 Msa0426460:CDS 40.0%
TCTCTTATAAATAGGACCGG+AGG + chr3_2:76862674-76862693 Msa0426460:three_prime_UTR 40.0%
CTCTTATAAATAGGACCGGA+GGG + chr3_2:76862675-76862694 Msa0426460:three_prime_UTR 40.0%
ATGGTAACATTTACTCCCTC+CGG - chr3_2:76862693-76862712 None:intergenic 40.0%
!! ATTAAGGTGGTGTGGGTTAG+TGG - chr3_2:76860389-76860408 None:intergenic 45.0%
GTTGAGGATTAAGGTGGTGT+GGG - chr3_2:76860396-76860415 None:intergenic 45.0%
TGTTGAGGATTAAGGTGGTG+TGG - chr3_2:76860397-76860416 None:intergenic 45.0%
GGAGATGTTGAGGATTAAGG+TGG - chr3_2:76860402-76860421 None:intergenic 45.0%
!!! CAGAGGTTTTGGAGATGTTG+AGG - chr3_2:76860412-76860431 None:intergenic 45.0%
! TGCAAATGGAGCAGAGGTTT+TGG - chr3_2:76860423-76860442 None:intergenic 45.0%
TGGGGAATCTGTGAAAAGAG+TGG - chr3_2:76860447-76860466 None:intergenic 45.0%
!! CAGGAGTGTCGGAGATATTA+AGG - chr3_2:76860471-76860490 None:intergenic 45.0%
! ATCAACTGGTTCAGGAGTGT+CGG - chr3_2:76860482-76860501 None:intergenic 45.0%
CCATCAACATCAATGTGGTG+AGG - chr3_2:76860565-76860584 None:intergenic 45.0%
CCTCACCACATTGATGTTGA+TGG + chr3_2:76860562-76860581 Msa0426460:CDS 45.0%
!!! GGTCGTGCTGTTTCTGATTT+TGG + chr3_2:76860661-76860680 Msa0426460:CDS 45.0%
! TGCGTTTTCCCATAGTTGAC+GGG + chr3_2:76861254-76861273 Msa0426460:intron 45.0%
AACATGCTTCAGTGTCTTGC+AGG + chr3_2:76861285-76861304 Msa0426460:intron 45.0%
TGCAGGTTATTCCATCCTTG+AGG + chr3_2:76861302-76861321 Msa0426460:intron 45.0%
ATTCCCATTCTCCTCAAGGA+TGG - chr3_2:76861316-76861335 None:intergenic 45.0%
TCCTTGAGGAGAATGGGAAT+TGG + chr3_2:76861316-76861335 Msa0426460:CDS 45.0%
TCCAATTCCCATTCTCCTCA+AGG - chr3_2:76861320-76861339 None:intergenic 45.0%
TCACGTCAGTCTCTACTATG+AGG + chr3_2:76861546-76861565 Msa0426460:intron 45.0%
! ACGCCATCAATTAGAAGCGT+TGG + chr3_2:76861674-76861693 Msa0426460:intron 45.0%
GCACCAACGCTTCTAATTGA+TGG - chr3_2:76861680-76861699 None:intergenic 45.0%
! CCGTTTTATCTGAGCCAGTT+TGG + chr3_2:76861717-76861736 Msa0426460:intron 45.0%
ATAAGGGTTCTTCCCATCTC+TGG + chr3_2:76862118-76862137 Msa0426460:intron 45.0%
GCGGAACCAACAATAGCTTT+CGG - chr3_2:76862446-76862465 None:intergenic 45.0%
GTTGTTTAAGCAACCGGAAG+AGG + chr3_2:76862547-76862566 Msa0426460:three_prime_UTR 45.0%
!!! TTTGTTTTTTTTTTTTAAAT+TGG - chr3_2:76862083-76862102 None:intergenic 5.0%
!! AAAAAAAAAAACAAATATAA+AGG + chr3_2:76862088-76862107 Msa0426460:intron 5.0%
!! AAAAAAAAAACAAATATAAA+GGG + chr3_2:76862089-76862108 Msa0426460:intron 5.0%
CAGACAAAAATGGCGGCAAC+AGG + chr3_2:76860229-76860248 Msa0426460:exon 50.0%
AGTGGTTGCAAATGGAGCAG+AGG - chr3_2:76860429-76860448 None:intergenic 50.0%
GTAGAGACTGACGTGAGTGA+GGG - chr3_2:76861542-76861561 None:intergenic 50.0%
AGTAGAGACTGACGTGAGTG+AGG - chr3_2:76861543-76861562 None:intergenic 50.0%
CTCAGATAAAACGGGACGGA+GGG - chr3_2:76861711-76861730 None:intergenic 50.0%
CTGGCTCAGATAAAACGGGA+CGG - chr3_2:76861715-76861734 None:intergenic 50.0%
ATGGGTCAGATATTCCGGGA+CGG + chr3_2:76861906-76861925 Msa0426460:intron 50.0%
CCTCTCATCCTCTGAGCAAA+GGG - chr3_2:76862231-76862250 None:intergenic 50.0%
ACCTCTCATCCTCTGAGCAA+AGG - chr3_2:76862232-76862251 None:intergenic 50.0%
! TGACGGTTTGCTCACTTTCC+TGG - chr3_2:76862413-76862432 None:intergenic 50.0%
AACAATAGCTTTCGGCCTGC+AGG - chr3_2:76862438-76862457 None:intergenic 50.0%
TGCAGGCCGAAAGCTATTGT+TGG + chr3_2:76862437-76862456 Msa0426460:CDS 50.0%
GCTCAGATAAAACGGGACGG+AGG - chr3_2:76861712-76861731 None:intergenic 55.0%
GTCAGATATTCCGGGACGGA+GGG + chr3_2:76861910-76861929 Msa0426460:intron 55.0%
GACGGAGGGAGTAGTTCTCT+AGG + chr3_2:76861924-76861943 Msa0426460:intron 55.0%
CATAGCAGCCCTTTGCTCAG+AGG + chr3_2:76862220-76862239 Msa0426460:CDS 55.0%
CCCTTTGCTCAGAGGATGAG+AGG + chr3_2:76862228-76862247 Msa0426460:CDS 55.0%
CCAGAGGGAGTAACCTCTTC+CGG - chr3_2:76862563-76862582 None:intergenic 55.0%
GGTCAGATATTCCGGGACGG+AGG + chr3_2:76861909-76861928 Msa0426460:intron 60.0%
GAGAACTACTCCCTCCGTCC+CGG - chr3_2:76861923-76861942 None:intergenic 60.0%
GAGCAAACCGTCACACCTGC+AGG + chr3_2:76862420-76862439 Msa0426460:CDS 60.0%
CTTTCGGCCTGCAGGTGTGA+CGG - chr3_2:76862430-76862449 None:intergenic 60.0%
CCGGAAGAGGTTACTCCCTC+TGG + chr3_2:76862560-76862579 Msa0426460:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 76860213 76862901 76860213 ID=Msa0426460;Name=Msa0426460
chr3_2 mRNA 76860213 76862901 76860213 ID=Msa0426460-mRNA-1;Parent=Msa0426460;Name=Msa0426460-mRNA-1;_AED=0.25;_eAED=0.25;_QI=25|1|1|1|1|1|4|401|254
chr3_2 exon 76860213 76860711 76860213 ID=Msa0426460-mRNA-1:exon:19944;Parent=Msa0426460-mRNA-1
chr3_2 exon 76861307 76861365 76861307 ID=Msa0426460-mRNA-1:exon:19945;Parent=Msa0426460-mRNA-1
chr3_2 exon 76862193 76862249 76862193 ID=Msa0426460-mRNA-1:exon:19946;Parent=Msa0426460-mRNA-1
chr3_2 exon 76862326 76862901 76862326 ID=Msa0426460-mRNA-1:exon:19947;Parent=Msa0426460-mRNA-1
chr3_2 five_prime_UTR 76860213 76860237 76860213 ID=Msa0426460-mRNA-1:five_prime_utr;Parent=Msa0426460-mRNA-1
chr3_2 CDS 76860238 76860711 76860238 ID=Msa0426460-mRNA-1:cds;Parent=Msa0426460-mRNA-1
chr3_2 CDS 76861307 76861365 76861307 ID=Msa0426460-mRNA-1:cds;Parent=Msa0426460-mRNA-1
chr3_2 CDS 76862193 76862249 76862193 ID=Msa0426460-mRNA-1:cds;Parent=Msa0426460-mRNA-1
chr3_2 CDS 76862326 76862500 76862326 ID=Msa0426460-mRNA-1:cds;Parent=Msa0426460-mRNA-1
chr3_2 three_prime_UTR 76862501 76862901 76862501 ID=Msa0426460-mRNA-1:three_prime_utr;Parent=Msa0426460-mRNA-1
Gene Sequence

>Msa0426460

ATGGCGGCAACAGGAGTTGCAGCAGCCACTGAAGTTTTCGCTTCGAAATCAATGGAATTAAAATGGGTAAGAACAAGAACAAGAAGAATCACCAAAACCACACACAAACAAAAAACGCTATCAACACCCCTTCTCCCACTTTTCATTTCCACTAACCCACACCACCTTAATCCTCAACATCTCCAAAACCTCTGCTCCATTTGCAACCACTCTTTTCACAGATTCCCCAACCTTAATATCTCCGACACTCCTGAACCAGTTGATATCAACAAGCTTCGCATTGCTCTTTCTCATAGTGACGTTCTTGTCTCTGTCTTCTGTAAACCTCACCACATTGATGTTGATGGTTTAACTGAATCTTCATCTTCCATTGTTGATTTTTTCACGCCGGTTTCTCCTGAACGTGATTTGTTGATTGGGTTTGGTCGTGCTGTTTCTGATTTTGGTCTCACTGCTTCTATATACGATGTTATGGTTATTCCATCCTTGAGGAGAATGGGAATTGGAAAAATGATTGTTAGAAAAGTTGTGAGAATGCTTACAAATAGAGACATCTATGACATAGCAGCCCTTTGCTCAGAGGATGAGAGGTTGTTTTTTAAGGCTTGTGGATTTGGTGGTGACATTTTGGACTCTACTACCATGATGTACACGAGAACTGTTTCATCAACAATCCAGGAAAGTGAGCAAACCGTCACACCTGCAGGCCGAAAGCTATTGTTGGTTCCGCCTCTGATTGACAGATTCAAGAATCCTCAAGGATGA
Protein sequence

>Msa0426460

MAATGVAAATEVFASKSMELKWVRTRTRRITKTTHKQKTLSTPLLPLFISTNPHHLNPQHLQNLCSICNHSFHRFPNLNISDTPEPVDINKLRIALSHSDVLVSVFCKPHHIDVDGLTESSSSIVDFFTPVSPERDLLIGFGRAVSDFGLTASIYDVMVIPSLRRMGIGKMIVRKVVRMLTNRDIYDIAALCSEDERLFFKACGFGGDILDSTTMMYTRTVSSTIQESEQTVTPAGRKLLLVPPLIDRFKNPQG*