Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473030 | XP_003602454.1 | 91.829 | 257 | 16 | 3 | 1 | 254 | 1 | 255 | 8.10e-163 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473030 | G7J9R3 | 91.829 | 257 | 16 | 3 | 1 | 254 | 1 | 255 | 3.87e-163 | 461 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0473030 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0426460 | Msa0473030 | 0.936200 | 2.540055e-97 | -8.615850e-47 |
| Msa0473030 | Msa0517170 | 0.942619 | 5.211857e-102 | -8.615850e-47 |
| Msa0473030 | Msa1393700 | 0.938716 | 4.245284e-99 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473030 | MtrunA17_Chr3g0128471 | 91.829 | 257 | 16 | 3 | 1 | 254 | 1 | 255 | 7.45e-167 | 461 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473030 | AT4G19985.6 | 48.052 | 231 | 89 | 5 | 17 | 223 | 14 | 237 | 3.25e-67 | 208 |
| Msa0473030 | AT4G19985.1 | 48.052 | 231 | 89 | 5 | 17 | 223 | 14 | 237 | 3.25e-67 | 208 |
| Msa0473030 | AT4G19985.4 | 42.205 | 263 | 89 | 6 | 17 | 223 | 14 | 269 | 5.05e-60 | 191 |
| Msa0473030 | AT4G19985.2 | 39.881 | 168 | 70 | 5 | 17 | 160 | 14 | 174 | 1.60e-30 | 112 |
| Msa0473030 | AT4G19985.5 | 39.881 | 168 | 70 | 5 | 17 | 160 | 14 | 174 | 1.60e-30 | 112 |
| Msa0473030 | AT4G19985.3 | 39.881 | 168 | 70 | 5 | 17 | 160 | 14 | 174 | 1.60e-30 | 112 |
| Msa0473030 | AT4G19985.7 | 39.181 | 171 | 73 | 5 | 17 | 163 | 14 | 177 | 1.90e-30 | 112 |
Find 83 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTATTTATAAGAGAAATTT+TGG | 0.134317 | 3_3:-75507178 | Msa0473030:three_prime_UTR |
| TCCTATTTATAAGAGAAATT+TGG | 0.153536 | 3_3:+75507095 | None:intergenic |
| CGAAATCAATGGAATTAAAA+TGG | 0.164701 | 3_3:-75509480 | Msa0473030:CDS |
| CCAAAATTTCTCTTATAAAT+AGG | 0.165614 | 3_3:+75507178 | None:intergenic |
| GGTCGTGCTGTTTCTGATTT+TGG | 0.179788 | 3_3:-75509100 | Msa0473030:CDS |
| CATTTAGGATATACCGATTT+AGG | 0.186285 | 3_3:+75506908 | None:intergenic |
| TGGATTTGGTGGTGACATTT+TGG | 0.201084 | 3_3:-75507418 | Msa0473030:CDS |
| CCCAAATTTCTCTTATAAAT+AGG | 0.204007 | 3_3:-75507096 | Msa0473030:three_prime_UTR |
| CTGAAATCTTTCTCACATTT+AGG | 0.216532 | 3_3:+75506893 | None:intergenic |
| TGACGGTTTGCTCACTTTCC+TGG | 0.239344 | 3_3:+75507352 | None:intergenic |
| TTTGGAGATGTTGAGGATTA+AGG | 0.248880 | 3_3:+75509359 | None:intergenic |
| TCAACAAAAGTTATTGTATC+TGG | 0.258639 | 3_3:-75507155 | Msa0473030:three_prime_UTR |
| CAGGAGTGTCGGAGATATTA+AGG | 0.273878 | 3_3:+75509293 | None:intergenic |
| TGCAAATGGAGCAGAGGTTT+TGG | 0.278048 | 3_3:+75509341 | None:intergenic |
| CCTCACCACATTGATGTTGA+TGG | 0.296205 | 3_3:-75509199 | Msa0473030:CDS |
| CCTGAACGTGATTTGTTGAT+TGG | 0.298630 | 3_3:-75509127 | Msa0473030:CDS |
| CCTATTTATAAGAGAAATTT+GGG | 0.322268 | 3_3:+75507096 | None:intergenic |
| TCAACAAAAGTGGATGTATT+TGG | 0.333075 | 3_3:+75507119 | None:intergenic |
| ATTAAGGTGGTGTGGGTTAG+TGG | 0.360151 | 3_3:+75509375 | None:intergenic |
| AAAATTGTTGTTTAAGCAAC+CGG | 0.364594 | 3_3:-75507221 | Msa0473030:three_prime_UTR |
| TTGTTGATATCAACTGGTTC+AGG | 0.374194 | 3_3:+75509274 | None:intergenic |
| CGTGATTTGTTGATTGGGTT+TGG | 0.384811 | 3_3:-75509121 | Msa0473030:CDS |
| CGAAGCTTGTTGATATCAAC+TGG | 0.398400 | 3_3:+75509268 | None:intergenic |
| CTGAACGTGATTTGTTGATT+GGG | 0.419104 | 3_3:-75509126 | Msa0473030:CDS |
| TGCTTCTATATACGATGTTA+TGG | 0.428860 | 3_3:-75509071 | Msa0473030:intron |
| GTACAGAGTATATCCTAAAT+CGG | 0.430618 | 3_3:-75506921 | Msa0473030:three_prime_UTR |
| CCAGAGGGAGTAACCTCTTC+CGG | 0.431132 | 3_3:+75507202 | None:intergenic |
| TATTCCATCCTTGAGGAGAA+TGG | 0.433471 | 3_3:-75508452 | Msa0473030:CDS |
| TCCTTGAGGAGAATGGGAAT+TGG | 0.440922 | 3_3:-75508445 | Msa0473030:CDS |
| CCGGAAGAGGTTACTCCCTC+TGG | 0.452944 | 3_3:-75507202 | Msa0473030:three_prime_UTR |
| ATTCCATCCTTGAGGAGAAT+GGG | 0.454926 | 3_3:-75508451 | Msa0473030:CDS |
| TTGTGTATATTCAACTGAGC+AGG | 0.455019 | 3_3:-75507032 | Msa0473030:three_prime_UTR |
| GTGTCGGAGATATTAAGGTT+GGG | 0.458757 | 3_3:+75509298 | None:intergenic |
| CCAATCAACAAATCACGTTC+AGG | 0.463909 | 3_3:+75509127 | None:intergenic |
| CCTCTCATCCTCTGAGCAAA+GGG | 0.464970 | 3_3:+75507534 | None:intergenic |
| GGAAATGAAAAGTGGGAGAA+GGG | 0.466176 | 3_3:+75509396 | None:intergenic |
| GAAATCAATGGAATTAAAAT+GGG | 0.468872 | 3_3:-75509479 | Msa0473030:CDS |
| AACAATAGCTTTCGGCCTGC+AGG | 0.469985 | 3_3:+75507327 | None:intergenic |
| AAATCACGTTCAGGAGAAAC+CGG | 0.482910 | 3_3:+75509136 | None:intergenic |
| TTTAAGGCTTGTGGATTTGG+TGG | 0.483526 | 3_3:-75507429 | Msa0473030:CDS |
| GAGCAAACCGTCACACCTGC+AGG | 0.493036 | 3_3:-75507342 | Msa0473030:CDS |
| GTTGTTTAAGCAACCGGAAG+AGG | 0.493158 | 3_3:-75507215 | Msa0473030:three_prime_UTR |
| TCCAATTCCCATTCTCCTCA+AGG | 0.504293 | 3_3:+75508444 | None:intergenic |
| GAAATTTGGGTCAACAAAAG+TGG | 0.507540 | 3_3:+75507109 | None:intergenic |
| GTGAAAAGAGTGGTTGCAAA+TGG | 0.508457 | 3_3:+75509327 | None:intergenic |
| GCGGAACCAACAATAGCTTT+CGG | 0.512055 | 3_3:+75507319 | None:intergenic |
| TGCAGGCCGAAAGCTATTGT+TGG | 0.512613 | 3_3:-75507325 | Msa0473030:CDS |
| AACTGTTTCATCAACAATCC+AGG | 0.512965 | 3_3:-75507370 | Msa0473030:CDS |
| ATCCATCCATCGAAAGTCGT+TGG | 0.519423 | 3_3:-75509558 | None:intergenic |
| TGTCGGAGATATTAAGGTTG+GGG | 0.519931 | 3_3:+75509299 | None:intergenic |
| ATGGTAACATTTACTCCCTC+CGG | 0.522295 | 3_3:+75507072 | None:intergenic |
| CTTTCGGCCTGCAGGTGTGA+CGG | 0.523798 | 3_3:+75507335 | None:intergenic |
| ACCTCTCATCCTCTGAGCAA+AGG | 0.534812 | 3_3:+75507533 | None:intergenic |
| CCCTTTGCTCAGAGGATGAG+AGG | 0.537381 | 3_3:-75507534 | Msa0473030:intron |
| ATTTCTCTTATAAATAGGAC+CGG | 0.540197 | 3_3:-75507091 | Msa0473030:three_prime_UTR |
| CTCTTATAAATAGGACCAGA+GGG | 0.542613 | 3_3:+75507187 | None:intergenic |
| AGTGTCGGAGATATTAAGGT+TGG | 0.549755 | 3_3:+75509297 | None:intergenic |
| CTCTTATAAATAGGACCGGA+GGG | 0.554392 | 3_3:-75507087 | Msa0473030:three_prime_UTR |
| ATCAACTGGTTCAGGAGTGT+CGG | 0.554412 | 3_3:+75509282 | None:intergenic |
| TGTTGAGGATTAAGGTGGTG+TGG | 0.555356 | 3_3:+75509367 | None:intergenic |
| AACAGTTCTCGTGTACATCA+TGG | 0.561270 | 3_3:+75507386 | None:intergenic |
| GTTGAGGATTAAGGTGGTGT+GGG | 0.570563 | 3_3:+75509368 | None:intergenic |
| TGGAAATGAAAAGTGGGAGA+AGG | 0.570598 | 3_3:+75509395 | None:intergenic |
| ATTCCCATTCTCCTCAAGGA+TGG | 0.579989 | 3_3:+75508448 | None:intergenic |
| GGAGATGTTGAGGATTAAGG+TGG | 0.587846 | 3_3:+75509362 | None:intergenic |
| TGCAGGTTATTCCATCCTTG+AGG | 0.587883 | 3_3:-75508459 | Msa0473030:intron |
| ACTCAATATTATCATCCTTG+AGG | 0.593636 | 3_3:+75507273 | None:intergenic |
| GGGTTAGTGGAAATGAAAAG+TGG | 0.602812 | 3_3:+75509388 | None:intergenic |
| GACAGATTCAAGAATCCTCA+AGG | 0.611144 | 3_3:-75507288 | Msa0473030:CDS |
| TCTCTTATAAATAGGACCGG+AGG | 0.614852 | 3_3:-75507088 | Msa0473030:three_prime_UTR |
| TGTGTATATTCAACTGAGCA+GGG | 0.620117 | 3_3:-75507031 | Msa0473030:three_prime_UTR |
| GAAATGAAAAGTGGGAGAAG+GGG | 0.622002 | 3_3:+75509397 | None:intergenic |
| CATAGCAGCCCTTTGCTCAG+AGG | 0.625766 | 3_3:-75507542 | Msa0473030:CDS |
| TCTCTTATAAATAGGACCAG+AGG | 0.626066 | 3_3:+75507186 | None:intergenic |
| AGTGGTTGCAAATGGAGCAG+AGG | 0.626606 | 3_3:+75509335 | None:intergenic |
| TTTCGAAGCGAAAACTTCAG+TGG | 0.633639 | 3_3:+75509498 | None:intergenic |
| TTCTTGAATCTGTCAATCAG+AGG | 0.641603 | 3_3:+75507297 | None:intergenic |
| CCATCAACATCAATGTGGTG+AGG | 0.651681 | 3_3:+75509199 | None:intergenic |
| GGTTAGTGGAAATGAAAAGT+GGG | 0.652172 | 3_3:+75509389 | None:intergenic |
| TGGGGAATCTGTGAAAAGAG+TGG | 0.656361 | 3_3:+75509317 | None:intergenic |
| TTGAATCTGTCAATCAGAGG+CGG | 0.671155 | 3_3:+75507300 | None:intergenic |
| TGATTGTTAGAAAAGTTGTG+AGG | 0.694957 | 3_3:-75508417 | Msa0473030:intron |
| TTAAACCATCAACATCAATG+TGG | 0.739906 | 3_3:+75509194 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr3_3:75508423-75508442 | Msa0473030:CDS | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr3_3:75508424-75508443 | Msa0473030:CDS | 10.0% |
| !!! | TTTTTTCCTTTTTCAATATT+TGG | - | chr3_3:75507877-75507896 | Msa0473030:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr3_3:75508425-75508444 | Msa0473030:CDS | 15.0% |
| !! | TAATTAGAGTTATATTGTAT+TGG | - | chr3_3:75508488-75508507 | Msa0473030:intron | 15.0% |
| !! | AATTAGAGTTATATTGTATT+GGG | - | chr3_3:75508489-75508508 | Msa0473030:intron | 15.0% |
| !! | GAAATCAATGGAATTAAAAT+GGG | - | chr3_3:75506952-75506971 | Msa0473030:three_prime_UTR | 20.0% |
| !!! | TCTTTGTTTTGAAAAAATGT+AGG | + | chr3_3:75507400-75507419 | None:intergenic | 20.0% |
| !! | CAAAATAACCAAAATAATGA+TGG | + | chr3_3:75507489-75507508 | None:intergenic | 20.0% |
| !!! | TATTTTGGTTATTTTGTTTC+TGG | - | chr3_3:75507493-75507512 | Msa0473030:intron | 20.0% |
| !!! | ATTTTGGTTATTTTGTTTCT+GGG | - | chr3_3:75507494-75507513 | Msa0473030:intron | 20.0% |
| !! | ATTGTCAGTTATTGTAATTA+TGG | + | chr3_3:75507554-75507573 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr3_3:75508448-75508467 | Msa0473030:CDS | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr3_3:75508521-75508540 | Msa0473030:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr3_3:75508558-75508577 | Msa0473030:intron | 20.0% |
| !! | CCAAAATTTCTCTTATAAAT+AGG | + | chr3_3:75509256-75509275 | None:intergenic | 20.0% |
| !!! | CCTATTTATAAGAGAAATTT+TGG | - | chr3_3:75509253-75509272 | Msa0473030:CDS | 20.0% |
| !! | ATTGTATCTGGTTAAAAAAT+TGG | - | chr3_3:75509288-75509307 | Msa0473030:CDS | 20.0% |
| !! | CCTATTTATAAGAGAAATTT+GGG | + | chr3_3:75509253-75509272 | None:intergenic | 20.0% |
| !! | TCCTATTTATAAGAGAAATT+TGG | + | chr3_3:75509252-75509271 | None:intergenic | 20.0% |
| ! | CGAAATCAATGGAATTAAAA+TGG | - | chr3_3:75506951-75506970 | Msa0473030:three_prime_UTR | 25.0% |
| ! | ATGAGTTCAATTTCATATCT+TGG | - | chr3_3:75507456-75507475 | Msa0473030:intron | 25.0% |
| !!! | CTATAAGCTGTTTTCTATTT+TGG | + | chr3_3:75507757-75507776 | None:intergenic | 25.0% |
| ! | AATAAGTTGTTTATCCAAAC+AGG | - | chr3_3:75507810-75507829 | Msa0473030:intron | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+GGG | - | chr3_3:75507811-75507830 | Msa0473030:intron | 25.0% |
| !! | ACATGTTTTTCATTAACAAC+AGG | + | chr3_3:75507853-75507872 | None:intergenic | 25.0% |
| ! | TCAATGCCAAATATTGAAAA+AGG | + | chr3_3:75507886-75507905 | None:intergenic | 25.0% |
| !! | ATCATTCATGAAGTTTTTGT+TGG | - | chr3_3:75508153-75508172 | Msa0473030:intron | 25.0% |
| ! | TGAATTTAATCACAATGTGT+CGG | - | chr3_3:75508306-75508325 | Msa0473030:intron | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr3_3:75508447-75508466 | Msa0473030:CDS | 25.0% |
| !! | TTGAAATGGCTCAATTATTT+TGG | - | chr3_3:75508535-75508554 | Msa0473030:intron | 25.0% |
| !! | TGAAATGGCTCAATTATTTT+GGG | - | chr3_3:75508536-75508555 | Msa0473030:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr3_3:75508557-75508576 | Msa0473030:intron | 25.0% |
| ! | TAAGTCAAATTAAACCTTGT+AGG | - | chr3_3:75508704-75508723 | Msa0473030:intron | 25.0% |
| ! | AATATAAAGGGTTGTGTATA+AGG | - | chr3_3:75508770-75508789 | Msa0473030:intron | 25.0% |
| ! | ATATAAAGGGTTGTGTATAA+GGG | - | chr3_3:75508771-75508790 | Msa0473030:intron | 25.0% |
| ! | AAGTTCCAAATATCTGAATA+TGG | - | chr3_3:75508827-75508846 | Msa0473030:intron | 25.0% |
| ! | ATAGACCATATTCAGATATT+TGG | + | chr3_3:75508835-75508854 | None:intergenic | 25.0% |
| ! | TTGTTCATTATTCCTATACA+TGG | - | chr3_3:75508920-75508939 | Msa0473030:intron | 25.0% |
| !!! | TTTTCTCAGGTTGTTTTTTA+AGG | - | chr3_3:75508986-75509005 | Msa0473030:intron | 25.0% |
| !!! | AAAATTGTTGTTTAAGCAAC+CGG | - | chr3_3:75509210-75509229 | Msa0473030:CDS | 25.0% |
| ! | TCAACAAAAGTTATTGTATC+TGG | - | chr3_3:75509276-75509295 | Msa0473030:CDS | 25.0% |
| ! | CCCAAATTTCTCTTATAAAT+AGG | - | chr3_3:75509335-75509354 | Msa0473030:CDS | 25.0% |
| ! | ATTTCTCTTATAAATAGGAC+CGG | - | chr3_3:75509340-75509359 | Msa0473030:CDS | 25.0% |
| !!! | TTACCATTTTTTGTCATTCT+TGG | - | chr3_3:75509375-75509394 | Msa0473030:CDS | 25.0% |
| !! | TTTTTGTTTGTGTGTGGTTT+TGG | + | chr3_3:75507002-75507021 | None:intergenic | 30.0% |
| TTAAACCATCAACATCAATG+TGG | + | chr3_3:75507240-75507259 | None:intergenic | 30.0% | |
| TGCTTCTATATACGATGTTA+TGG | - | chr3_3:75507360-75507379 | Msa0473030:CDS | 30.0% | |
| !!! | GTTTTGAAAAAATGTAGGCA+AGG | + | chr3_3:75507395-75507414 | None:intergenic | 30.0% |
| ! | CAATTTCATATCTTGGTTCT+TGG | - | chr3_3:75507463-75507482 | Msa0473030:intron | 30.0% |
| ! | TTTCTGGGTTTTCTTAGTTT+TGG | - | chr3_3:75507509-75507528 | Msa0473030:intron | 30.0% |
| !! | TTCTGGGTTTTCTTAGTTTT+GGG | - | chr3_3:75507510-75507529 | Msa0473030:intron | 30.0% |
| ACTAACTATTTATGCCTGTT+TGG | - | chr3_3:75507613-75507632 | Msa0473030:intron | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | + | chr3_3:75507630-75507649 | None:intergenic | 30.0% | |
| AAACAGTCTCACAATACTTA+TGG | + | chr3_3:75507665-75507684 | None:intergenic | 30.0% | |
| !! | TAAGTATTGTGAGACTGTTT+TGG | - | chr3_3:75507665-75507684 | Msa0473030:intron | 30.0% |
| CAGCTTATAGCTTATACAAT+AGG | - | chr3_3:75507767-75507786 | Msa0473030:intron | 30.0% | |
| TATAAGATATAAGCCCTGTT+TGG | + | chr3_3:75507827-75507846 | None:intergenic | 30.0% | |
| !! | CAATATTTGGCATTGATTTG+AGG | - | chr3_3:75507890-75507909 | Msa0473030:intron | 30.0% |
| TGATTGTTAGAAAAGTTGTG+AGG | - | chr3_3:75508014-75508033 | Msa0473030:intron | 30.0% | |
| ATTGAATCATCACAGAAGAT+AGG | + | chr3_3:75508057-75508076 | None:intergenic | 30.0% | |
| ATTAGATTCTCATCAGCAAA+AGG | + | chr3_3:75508133-75508152 | None:intergenic | 30.0% | |
| ! | TTTTTGTTGGCATAGAGTTT+TGG | - | chr3_3:75508166-75508185 | Msa0473030:intron | 30.0% |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr3_3:75508432-75508451 | Msa0473030:CDS | 30.0% | |
| TGCAATAAAAGCTGTCATAT+TGG | - | chr3_3:75508651-75508670 | Msa0473030:intron | 30.0% | |
| GCAATAAAAGCTGTCATATT+GGG | - | chr3_3:75508652-75508671 | Msa0473030:intron | 30.0% | |
| CTTGTAGGAGTTGAATATAA+GGG | - | chr3_3:75508719-75508738 | Msa0473030:intron | 30.0% | |
| TTGTAGGAGTTGAATATAAG+GGG | - | chr3_3:75508720-75508739 | Msa0473030:intron | 30.0% | |
| ATTGATCTTTAACCAGAGAT+GGG | + | chr3_3:75508802-75508821 | None:intergenic | 30.0% | |
| TATTGATCTTTAACCAGAGA+TGG | + | chr3_3:75508803-75508822 | None:intergenic | 30.0% | |
| GATAAAACTAGACCATGTAT+AGG | + | chr3_3:75508935-75508954 | None:intergenic | 30.0% | |
| CATCAATTACTGTTCACAAA+GGG | + | chr3_3:75508957-75508976 | None:intergenic | 30.0% | |
| ACATCAATTACTGTTCACAA+AGG | + | chr3_3:75508958-75508977 | None:intergenic | 30.0% | |
| !!! | TTTTTTAAGGCTTGTGGATT+TGG | - | chr3_3:75508999-75509018 | Msa0473030:intron | 30.0% |
| ACTCAATATTATCATCCTTG+AGG | + | chr3_3:75509161-75509180 | None:intergenic | 30.0% | |
| TCAACAAAAGTGGATGTATT+TGG | + | chr3_3:75509315-75509334 | None:intergenic | 30.0% | |
| AAGCCAAGAATGACAAAAAA+TGG | + | chr3_3:75509381-75509400 | None:intergenic | 30.0% | |
| GTACAGAGTATATCCTAAAT+CGG | - | chr3_3:75509510-75509529 | Msa0473030:CDS | 30.0% | |
| !! | CATTTAGGATATACCGATTT+AGG | + | chr3_3:75509526-75509545 | None:intergenic | 30.0% |
| CTGAAATCTTTCTCACATTT+AGG | + | chr3_3:75509541-75509560 | None:intergenic | 30.0% | |
| ! | AGTTTTCGCTTCGAAATCAA+TGG | - | chr3_3:75506940-75506959 | Msa0473030:three_prime_UTR | 35.0% |
| !!! | TAGCGTTTTTTGTTTGTGTG+TGG | + | chr3_3:75507008-75507027 | None:intergenic | 35.0% |
| GGTTAGTGGAAATGAAAAGT+GGG | + | chr3_3:75507045-75507064 | None:intergenic | 35.0% | |
| TTTGGAGATGTTGAGGATTA+AGG | + | chr3_3:75507075-75507094 | None:intergenic | 35.0% | |
| ! | TTGTTGATATCAACTGGTTC+AGG | + | chr3_3:75507160-75507179 | None:intergenic | 35.0% |
| !!! | CATTGTTGATTTTTTCACGC+CGG | - | chr3_3:75507276-75507295 | Msa0473030:exon | 35.0% |
| !! | CTGAACGTGATTTGTTGATT+GGG | - | chr3_3:75507305-75507324 | Msa0473030:CDS | 35.0% |
| ! | GTTCTTGGCCATCATTATTT+TGG | - | chr3_3:75507478-75507497 | Msa0473030:intron | 35.0% |
| TTCTGTGATGATTCAATGCA+TGG | - | chr3_3:75508060-75508079 | Msa0473030:intron | 35.0% | |
| ! | TGAAAGTGAGTATCTAGTTC+AGG | + | chr3_3:75508088-75508107 | None:intergenic | 35.0% |
| AATCTGTGTGAAAACCAAAC+TGG | + | chr3_3:75508404-75508423 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGATATTC+CGG | - | chr3_3:75508571-75508590 | Msa0473030:intron | 35.0% | |
| CCTTATATTCAACTCCTACA+AGG | + | chr3_3:75508721-75508740 | None:intergenic | 35.0% | |
| CCTTGTAGGAGTTGAATATA+AGG | - | chr3_3:75508718-75508737 | Msa0473030:intron | 35.0% | |
| !!! | AGGTTGTTTTTTAAGGCTTG+TGG | - | chr3_3:75508993-75509012 | Msa0473030:intron | 35.0% |
| AACTGTTTCATCAACAATCC+AGG | - | chr3_3:75509061-75509080 | Msa0473030:intron | 35.0% | |
| TTCTTGAATCTGTCAATCAG+AGG | + | chr3_3:75509137-75509156 | None:intergenic | 35.0% | |
| CTCTTATAAATAGGACCAGA+GGG | + | chr3_3:75509247-75509266 | None:intergenic | 35.0% | |
| TCTCTTATAAATAGGACCAG+AGG | + | chr3_3:75509248-75509267 | None:intergenic | 35.0% | |
| GAAATTTGGGTCAACAAAAG+TGG | + | chr3_3:75509325-75509344 | None:intergenic | 35.0% | |
| TTGTGTATATTCAACTGAGC+AGG | - | chr3_3:75509399-75509418 | Msa0473030:CDS | 35.0% | |
| TGTGTATATTCAACTGAGCA+GGG | - | chr3_3:75509400-75509419 | Msa0473030:CDS | 35.0% | |
| ! | TCGTTGGTTGCAGACAAAAA+TGG | - | chr3_3:75506889-75506908 | Msa0473030:three_prime_UTR | 40.0% |
| TTGGTTGCAGACAAAAATGG+CGG | - | chr3_3:75506892-75506911 | Msa0473030:three_prime_UTR | 40.0% | |
| TTTCGAAGCGAAAACTTCAG+TGG | + | chr3_3:75506936-75506955 | None:intergenic | 40.0% | |
| GAAATGAAAAGTGGGAGAAG+GGG | + | chr3_3:75507037-75507056 | None:intergenic | 40.0% | |
| GGAAATGAAAAGTGGGAGAA+GGG | + | chr3_3:75507038-75507057 | None:intergenic | 40.0% | |
| TGGAAATGAAAAGTGGGAGA+AGG | + | chr3_3:75507039-75507058 | None:intergenic | 40.0% | |
| ! | GGGTTAGTGGAAATGAAAAG+TGG | + | chr3_3:75507046-75507065 | None:intergenic | 40.0% |
| GTGAAAAGAGTGGTTGCAAA+TGG | + | chr3_3:75507107-75507126 | None:intergenic | 40.0% | |
| TGTCGGAGATATTAAGGTTG+GGG | + | chr3_3:75507135-75507154 | None:intergenic | 40.0% | |
| GTGTCGGAGATATTAAGGTT+GGG | + | chr3_3:75507136-75507155 | None:intergenic | 40.0% | |
| ! | AGTGTCGGAGATATTAAGGT+TGG | + | chr3_3:75507137-75507156 | None:intergenic | 40.0% |
| !! | CGAAGCTTGTTGATATCAAC+TGG | + | chr3_3:75507166-75507185 | None:intergenic | 40.0% |
| CGGCGTGAAAAAATCAACAA+TGG | + | chr3_3:75507278-75507297 | None:intergenic | 40.0% | |
| AAATCACGTTCAGGAGAAAC+CGG | + | chr3_3:75507298-75507317 | None:intergenic | 40.0% | |
| CCAATCAACAAATCACGTTC+AGG | + | chr3_3:75507307-75507326 | None:intergenic | 40.0% | |
| !! | CCTGAACGTGATTTGTTGAT+TGG | - | chr3_3:75507304-75507323 | Msa0473030:CDS | 40.0% |
| !! | CGTGATTTGTTGATTGGGTT+TGG | - | chr3_3:75507310-75507329 | Msa0473030:CDS | 40.0% |
| ! | TTGCGTTTTCCCATAGTTGA+CGG | - | chr3_3:75507923-75507942 | Msa0473030:intron | 40.0% |
| GAATAATGCCCGTCAACTAT+GGG | + | chr3_3:75507935-75507954 | None:intergenic | 40.0% | |
| TGAATAATGCCCGTCAACTA+TGG | + | chr3_3:75507936-75507955 | None:intergenic | 40.0% | |
| TATTCCATCCTTGAGGAGAA+TGG | - | chr3_3:75507979-75507998 | Msa0473030:intron | 40.0% | |
| ATTCCATCCTTGAGGAGAAT+GGG | - | chr3_3:75507980-75507999 | Msa0473030:intron | 40.0% | |
| CATCACAGAAGATAGGCAAA+AGG | + | chr3_3:75508050-75508069 | None:intergenic | 40.0% | |
| ! | TCTACTATGAGGCACTAACA+CGG | - | chr3_3:75508227-75508246 | Msa0473030:intron | 40.0% |
| GTCGATGTGTAAGTGTGTAT+TGG | + | chr3_3:75508256-75508275 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGATATTCC+GGG | - | chr3_3:75508572-75508591 | Msa0473030:intron | 40.0% | |
| !! | GATGTTCTCGACTTTTTCTC+AGG | - | chr3_3:75508973-75508992 | Msa0473030:intron | 40.0% |
| ! | TTTAAGGCTTGTGGATTTGG+TGG | - | chr3_3:75509002-75509021 | Msa0473030:intron | 40.0% |
| !!! | TGGATTTGGTGGTGACATTT+TGG | - | chr3_3:75509013-75509032 | Msa0473030:intron | 40.0% |
| AACAGTTCTCGTGTACATCA+TGG | + | chr3_3:75509048-75509067 | None:intergenic | 40.0% | |
| TTGAATCTGTCAATCAGAGG+CGG | + | chr3_3:75509134-75509153 | None:intergenic | 40.0% | |
| GACAGATTCAAGAATCCTCA+AGG | - | chr3_3:75509143-75509162 | Msa0473030:CDS | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | - | chr3_3:75509343-75509362 | Msa0473030:CDS | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | - | chr3_3:75509344-75509363 | Msa0473030:CDS | 40.0% | |
| ATGGTAACATTTACTCCCTC+CGG | + | chr3_3:75509362-75509381 | None:intergenic | 40.0% | |
| !! | ATTAAGGTGGTGTGGGTTAG+TGG | + | chr3_3:75507059-75507078 | None:intergenic | 45.0% |
| GTTGAGGATTAAGGTGGTGT+GGG | + | chr3_3:75507066-75507085 | None:intergenic | 45.0% | |
| TGTTGAGGATTAAGGTGGTG+TGG | + | chr3_3:75507067-75507086 | None:intergenic | 45.0% | |
| GGAGATGTTGAGGATTAAGG+TGG | + | chr3_3:75507072-75507091 | None:intergenic | 45.0% | |
| !!! | CAGAGGTTTTGGAGATGTTG+AGG | + | chr3_3:75507082-75507101 | None:intergenic | 45.0% |
| ! | TGCAAATGGAGCAGAGGTTT+TGG | + | chr3_3:75507093-75507112 | None:intergenic | 45.0% |
| TGGGGAATCTGTGAAAAGAG+TGG | + | chr3_3:75507117-75507136 | None:intergenic | 45.0% | |
| !! | CAGGAGTGTCGGAGATATTA+AGG | + | chr3_3:75507141-75507160 | None:intergenic | 45.0% |
| ! | ATCAACTGGTTCAGGAGTGT+CGG | + | chr3_3:75507152-75507171 | None:intergenic | 45.0% |
| CCATCAACATCAATGTGGTG+AGG | + | chr3_3:75507235-75507254 | None:intergenic | 45.0% | |
| CCTCACCACATTGATGTTGA+TGG | - | chr3_3:75507232-75507251 | Msa0473030:three_prime_UTR | 45.0% | |
| !!! | GGTCGTGCTGTTTCTGATTT+TGG | - | chr3_3:75507331-75507350 | Msa0473030:CDS | 45.0% |
| ! | TGCGTTTTCCCATAGTTGAC+GGG | - | chr3_3:75507924-75507943 | Msa0473030:intron | 45.0% |
| AACATGCTTCAGTGTCTTGC+AGG | - | chr3_3:75507955-75507974 | Msa0473030:intron | 45.0% | |
| TGCAGGTTATTCCATCCTTG+AGG | - | chr3_3:75507972-75507991 | Msa0473030:intron | 45.0% | |
| ATTCCCATTCTCCTCAAGGA+TGG | + | chr3_3:75507986-75508005 | None:intergenic | 45.0% | |
| TCCTTGAGGAGAATGGGAAT+TGG | - | chr3_3:75507986-75508005 | Msa0473030:intron | 45.0% | |
| TCCAATTCCCATTCTCCTCA+AGG | + | chr3_3:75507990-75508009 | None:intergenic | 45.0% | |
| TCACGTCAGTCTCTACTATG+AGG | - | chr3_3:75508216-75508235 | Msa0473030:intron | 45.0% | |
| ! | ACGCCATCAATTAGAAGCGT+TGG | - | chr3_3:75508344-75508363 | Msa0473030:intron | 45.0% |
| GCACCAACGCTTCTAATTGA+TGG | + | chr3_3:75508350-75508369 | None:intergenic | 45.0% | |
| !! | CAAACTGGCTCGGATAAAAC+GGG | + | chr3_3:75508389-75508408 | None:intergenic | 45.0% |
| !! | CCAAACTGGCTCGGATAAAA+CGG | + | chr3_3:75508390-75508409 | None:intergenic | 45.0% |
| GTGTGAAAACCAAACTGGCT+CGG | + | chr3_3:75508399-75508418 | None:intergenic | 45.0% | |
| ATAAGGGTTCTTCCCATCTC+TGG | - | chr3_3:75508787-75508806 | Msa0473030:intron | 45.0% | |
| GCGGAACCAACAATAGCTTT+CGG | + | chr3_3:75509115-75509134 | None:intergenic | 45.0% | |
| GTTGTTTAAGCAACCGGAAG+AGG | - | chr3_3:75509216-75509235 | Msa0473030:CDS | 45.0% | |
| !!! | ATTTGTTTTTTTTTTTAAAT+TGG | + | chr3_3:75508753-75508772 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAACAAATATAA+AGG | - | chr3_3:75508757-75508776 | Msa0473030:intron | 5.0% |
| !! | AAAAAAAAAACAAATATAAA+GGG | - | chr3_3:75508758-75508777 | Msa0473030:intron | 5.0% |
| CAGACAAAAATGGCGGCAAC+AGG | - | chr3_3:75506899-75506918 | Msa0473030:three_prime_UTR | 50.0% | |
| AGTGGTTGCAAATGGAGCAG+AGG | + | chr3_3:75507099-75507118 | None:intergenic | 50.0% | |
| GTAGAGACTGACGTGAGTGA+GGG | + | chr3_3:75508212-75508231 | None:intergenic | 50.0% | |
| AGTAGAGACTGACGTGAGTG+AGG | + | chr3_3:75508213-75508232 | None:intergenic | 50.0% | |
| ! | CCGTTTTATCCGAGCCAGTT+TGG | - | chr3_3:75508387-75508406 | Msa0473030:intron | 50.0% |
| ATGGGTCAGATATTCCGGGA+CGG | - | chr3_3:75508576-75508595 | Msa0473030:intron | 50.0% | |
| CCTCTCATCCTCTGAGCAAA+GGG | + | chr3_3:75508900-75508919 | None:intergenic | 50.0% | |
| ACCTCTCATCCTCTGAGCAA+AGG | + | chr3_3:75508901-75508920 | None:intergenic | 50.0% | |
| ! | TGACGGTTTGCTCACTTTCC+TGG | + | chr3_3:75509082-75509101 | None:intergenic | 50.0% |
| AACAATAGCTTTCGGCCTGC+AGG | + | chr3_3:75509107-75509126 | None:intergenic | 50.0% | |
| TGCAGGCCGAAAGCTATTGT+TGG | - | chr3_3:75509106-75509125 | Msa0473030:CDS | 50.0% | |
| CTCGGATAAAACGGGACGGA+GGG | + | chr3_3:75508381-75508400 | None:intergenic | 55.0% | |
| !! | CTGGCTCGGATAAAACGGGA+CGG | + | chr3_3:75508385-75508404 | None:intergenic | 55.0% |
| GTCAGATATTCCGGGACGGA+GGG | - | chr3_3:75508580-75508599 | Msa0473030:intron | 55.0% | |
| GACGGAGGGAGTAGTTCTCT+AGG | - | chr3_3:75508594-75508613 | Msa0473030:intron | 55.0% | |
| CATAGCAGCCCTTTGCTCAG+AGG | - | chr3_3:75508889-75508908 | Msa0473030:intron | 55.0% | |
| CCCTTTGCTCAGAGGATGAG+AGG | - | chr3_3:75508897-75508916 | Msa0473030:intron | 55.0% | |
| CCAGAGGGAGTAACCTCTTC+CGG | + | chr3_3:75509232-75509251 | None:intergenic | 55.0% | |
| GCTCGGATAAAACGGGACGG+AGG | + | chr3_3:75508382-75508401 | None:intergenic | 60.0% | |
| GGTCAGATATTCCGGGACGG+AGG | - | chr3_3:75508579-75508598 | Msa0473030:intron | 60.0% | |
| GAGAACTACTCCCTCCGTCC+CGG | + | chr3_3:75508593-75508612 | None:intergenic | 60.0% | |
| GAGCAAACCGTCACACCTGC+AGG | - | chr3_3:75509089-75509108 | Msa0473030:CDS | 60.0% | |
| CTTTCGGCCTGCAGGTGTGA+CGG | + | chr3_3:75509099-75509118 | None:intergenic | 60.0% | |
| CCGGAAGAGGTTACTCCCTC+TGG | - | chr3_3:75509229-75509248 | Msa0473030:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 75506883 | 75509570 | 75506883 | ID=Msa0473030;Name=Msa0473030 |
| chr3_3 | mRNA | 75506883 | 75509570 | 75506883 | ID=Msa0473030-mRNA-1;Parent=Msa0473030;Name=Msa0473030-mRNA-1;_AED=0.25;_eAED=0.25;_QI=25|1|1|1|1|1|4|401|254 |
| chr3_3 | exon | 75506883 | 75507458 | 75506883 | ID=Msa0473030-mRNA-1:exon:19652;Parent=Msa0473030-mRNA-1 |
| chr3_3 | exon | 75507535 | 75507591 | 75507535 | ID=Msa0473030-mRNA-1:exon:19651;Parent=Msa0473030-mRNA-1 |
| chr3_3 | exon | 75508418 | 75508476 | 75508418 | ID=Msa0473030-mRNA-1:exon:19650;Parent=Msa0473030-mRNA-1 |
| chr3_3 | exon | 75509072 | 75509570 | 75509072 | ID=Msa0473030-mRNA-1:exon:19649;Parent=Msa0473030-mRNA-1 |
| chr3_3 | five_prime_UTR | 75509546 | 75509570 | 75509546 | ID=Msa0473030-mRNA-1:five_prime_utr;Parent=Msa0473030-mRNA-1 |
| chr3_3 | CDS | 75509072 | 75509545 | 75509072 | ID=Msa0473030-mRNA-1:cds;Parent=Msa0473030-mRNA-1 |
| chr3_3 | CDS | 75508418 | 75508476 | 75508418 | ID=Msa0473030-mRNA-1:cds;Parent=Msa0473030-mRNA-1 |
| chr3_3 | CDS | 75507535 | 75507591 | 75507535 | ID=Msa0473030-mRNA-1:cds;Parent=Msa0473030-mRNA-1 |
| chr3_3 | CDS | 75507284 | 75507458 | 75507284 | ID=Msa0473030-mRNA-1:cds;Parent=Msa0473030-mRNA-1 |
| chr3_3 | three_prime_UTR | 75506883 | 75507283 | 75506883 | ID=Msa0473030-mRNA-1:three_prime_utr;Parent=Msa0473030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
