AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0426510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0426510 MtrunA17_Chr3g0128531 87.569 362 36 1 1 362 1 353 0.0 633
Msa0426510 MtrunA17_Chr5g0428621 69.000 300 92 1 62 361 182 480 1.15e-152 438
Msa0426510 MtrunA17_Chr7g0245321 62.252 302 114 0 60 361 124 425 4.63e-133 386
Msa0426510 MtrunA17_Chr5g0395481 48.214 56 29 0 289 344 280 335 6.80e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0426510 AT5G01960.1 61.812 309 118 0 52 360 116 424 3.42e-144 415
Msa0426510 AT1G65040.2 44.828 58 32 0 289 346 280 337 6.55e-11 63.9
Msa0426510 AT1G65040.4 44.828 58 32 0 289 346 257 314 6.65e-11 63.9
Msa0426510 AT1G65040.3 45.614 57 31 0 289 345 209 265 7.12e-11 63.5
Msa0426510 AT1G65040.5 45.614 57 31 0 289 345 127 183 7.45e-11 62.4
Msa0426510 AT1G65040.1 44.828 58 32 0 289 346 101 158 8.34e-11 62.4
Msa0426510 AT1G65040.6 44.828 58 32 0 289 346 139 196 8.65e-11 62.8

Find 90 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAAGACGAAATTCTTTA+TGG 0.134162 3_2:-76927729 Msa0426510:CDS
TTCTATGAATTTGAGATTAA+AGG 0.185855 3_2:-76925029 Msa0426510:three_prime_UTR
GAACGCAATATTCATCATTT+TGG 0.200530 3_2:-76929179 Msa0426510:CDS
CCAAAAGATGGTGTTGCTTT+TGG 0.234388 3_2:+76929202 None:intergenic
GTCCAAATGTTTAGTAATAA+TGG 0.237018 3_2:-76925057 Msa0426510:three_prime_UTR
ATCAACAACAAGAGCGAAAA+AGG 0.256421 3_2:+76930596 None:intergenic
AACAATTGTGATAAACATTA+AGG 0.268620 3_2:-76924788 None:intergenic
ATGCGTTTCGACGACGTATA+AGG 0.273007 3_2:+76931080 None:intergenic
ATCCATTATTACTAAACATT+TGG 0.291163 3_2:+76925055 None:intergenic
ATCCTTGGTCAAATCAATTA+AGG 0.306744 3_2:-76931014 Msa0426510:five_prime_UTR
CCACCGACAACATCAGTTAA+AGG 0.319245 3_2:+76930692 None:intergenic
TTAGTAATAACACTATAAAT+TGG 0.319706 3_2:-76930927 Msa0426510:five_prime_UTR
TTATCTTGAAGGATAAGATT+TGG 0.327031 3_2:+76931117 None:intergenic
CCAAAAGCAACACCATCTTT+TGG 0.327744 3_2:-76929202 Msa0426510:CDS
GAAGATGCATGTTCCTATCT+TGG 0.348721 3_2:-76925986 Msa0426510:CDS
TATCTTGAAGGATAAGATTT+GGG 0.357584 3_2:+76931118 None:intergenic
GTTTATCACAATTGTTATCA+TGG 0.359540 3_2:+76924795 None:intergenic
GCAGATTTCTTTGTCACAAT+TGG 0.363731 3_2:-76929540 Msa0426510:intron
AAGCGTTTGCGTTATCTTGA+AGG 0.380712 3_2:+76931106 None:intergenic
CTATGCATTTACGAGTGTTA+TGG 0.387657 3_2:-76929262 Msa0426510:CDS
CCTGCTCATCTGCGGACCTT+TGG 0.398301 3_2:-76925151 Msa0426510:CDS
GTGTATCAGCTGTAATGTTC+AGG 0.404247 3_2:-76929518 Msa0426510:CDS
TGTCCACAGCGAACCAAGAT+AGG 0.408114 3_2:+76925973 None:intergenic
AGAGAAGGATTAATGAAACT+TGG 0.432044 3_2:+76931188 None:intergenic
GAAATTAATTAAGATAAAGA+TGG 0.451298 3_2:+76931154 None:intergenic
GTCCCTTTAACTGATGTTGT+CGG 0.452080 3_2:-76930695 Msa0426510:CDS
CTTTCTTGCCAGCACCAGTT+TGG 0.452560 3_2:-76927986 Msa0426510:CDS
AATGTACTTGCCCGGTGTGC+AGG 0.460660 3_2:-76925186 Msa0426510:CDS
CTACCAATGTCCTGCACACC+GGG 0.467233 3_2:+76925176 None:intergenic
CACCGACAACATCAGTTAAA+GGG 0.474359 3_2:+76930693 None:intergenic
TAACCCGTCGACGGAAGTTA+TGG 0.475247 3_2:+76928147 None:intergenic
ATTAATGAAACTTGGGAAAG+GGG 0.475856 3_2:+76931196 None:intergenic
CCAAAGGTCCGCAGATGAGC+AGG 0.477758 3_2:+76925151 None:intergenic
GATTAATGAAACTTGGGAAA+GGG 0.482036 3_2:+76931195 None:intergenic
CTCTTCTCATCAATTATCAC+AGG 0.485206 3_2:-76927930 Msa0426510:CDS
AATCGGTACCAAACTGGTGC+TGG 0.486207 3_2:+76927978 None:intergenic
CAAGGGTCAAATCTTAACTC+TGG 0.491542 3_2:-76928036 Msa0426510:intron
TAGGAACATGCATCTTCTCT+TGG 0.491680 3_2:+76925992 None:intergenic
CTTCTTCTTCTTCATCATCA+CGG 0.500594 3_2:-76930775 Msa0426510:CDS
TGTTTATGCTACATCAGAAC+AGG 0.501816 3_2:-76927706 Msa0426510:intron
TAAATGCAGGTACGTGCTGC+TGG 0.508684 3_2:-76926033 Msa0426510:intron
GAGAAGGATTAATGAAACTT+GGG 0.508842 3_2:+76931189 None:intergenic
AATATTGCGTTCCCAAAAGA+TGG 0.512320 3_2:+76929190 None:intergenic
TGAGAGAGAATGTACTTGCC+CGG 0.526955 3_2:-76925194 Msa0426510:CDS
CATCTGCGGACCTTTGGAGA+TGG 0.534634 3_2:-76925145 Msa0426510:CDS
AAATTAATTAAGATAAAGAT+GGG 0.536742 3_2:+76931155 None:intergenic
CTCTGTCCGCCGCAATAGCA+CGG 0.540543 3_2:+76930726 None:intergenic
AAATGTTTAGTAATAATGGA+TGG 0.543167 3_2:-76925053 Msa0426510:three_prime_UTR
TTGGTCAAATCAATTAAGGT+AGG 0.543298 3_2:-76931010 Msa0426510:five_prime_UTR
GCTGCTTCTCAACAAGAGGC+TGG 0.544863 3_2:-76930815 Msa0426510:CDS
ATTATTACTAAACATTTGGA+CGG 0.545707 3_2:+76925059 None:intergenic
AATGGTGCGGCAAGTGGCAA+TGG 0.548641 3_2:-76928213 Msa0426510:CDS
TGATTCCTCGCACGTGGCAA+CGG 0.549343 3_2:-76930847 Msa0426510:CDS
AGCTGCTGCTTCTCAACAAG+AGG 0.550089 3_2:-76930819 Msa0426510:CDS
CAAGAAACATACTGCGCTGA+AGG 0.554124 3_2:-76929481 Msa0426510:intron
TTGCCCGGTGTGCAGGACAT+TGG 0.557576 3_2:-76925179 Msa0426510:CDS
ACGCCATAACTTCCGTCGAC+GGG 0.558334 3_2:-76928150 Msa0426510:intron
TCATTGTCTTTCAGATACAA+TGG 0.559127 3_2:-76928231 Msa0426510:intron
AACTACTCCTAACCCGTCGA+CGG 0.559432 3_2:+76928138 None:intergenic
ATGGGAAATAATAAAAGAGA+AGG 0.560849 3_2:+76931173 None:intergenic
GTTAACATCTGCAGTTGAGA+AGG 0.561594 3_2:-76927889 Msa0426510:intron
AGATACAATGGTGCGGCAAG+TGG 0.567277 3_2:-76928219 Msa0426510:CDS
ATTAATTCATTATCATCATG+AGG 0.574484 3_2:+76924859 None:intergenic
CCTTTAACTGATGTTGTCGG+TGG 0.583319 3_2:-76930692 Msa0426510:CDS
GAATGTGATGTTCTCTGAAG+AGG 0.584677 3_2:-76930753 Msa0426510:CDS
TACCTTAATTGATTTGACCA+AGG 0.590434 3_2:+76931012 None:intergenic
GCGAGGAGTGTGTATCTGAA+TGG 0.594730 3_2:-76925942 Msa0426510:intron
GACGCCATAACTTCCGTCGA+CGG 0.601090 3_2:-76928151 Msa0426510:CDS
ACATCAGTTAAAGGGACTAA+CGG 0.601383 3_2:+76930701 None:intergenic
GGATTAATGAAACTTGGGAA+AGG 0.602435 3_2:+76931194 None:intergenic
AGAGGCTCACCGTGCTATTG+CGG 0.605547 3_2:-76930735 Msa0426510:CDS
GTTCCTATCTTGGTTCGCTG+TGG 0.607392 3_2:-76925976 Msa0426510:CDS
AAAAGAGAGAGCAAGAAGAG+CGG 0.612995 3_2:+76929303 None:intergenic
GGCTCACCGTGCTATTGCGG+CGG 0.614817 3_2:-76930732 Msa0426510:CDS
CGAAACCGTTGCCACGTGCG+AGG 0.614851 3_2:+76930842 None:intergenic
ACTACCAATGTCCTGCACAC+CGG 0.615463 3_2:+76925175 None:intergenic
AAGGGGTTAGTTGAAGATGA+CGG 0.616061 3_2:+76931213 None:intergenic
AAATCATACATTCCATGTGA+CGG 0.624468 3_2:+76930561 None:intergenic
TGATCATGATTCCTCGCACG+TGG 0.632911 3_2:-76930853 Msa0426510:exon
TTGGCGGAAACATGGCCAGA+GGG 0.641387 3_2:+76929221 None:intergenic
GTCTTTCAGATACAATGGTG+CGG 0.642317 3_2:-76928226 Msa0426510:intron
ATTCTGATACCATCGTGTTG+AGG 0.642555 3_2:+76930968 None:intergenic
ACTTGTTGATCCATCTCCAA+AGG 0.643362 3_2:+76925135 None:intergenic
TGGTAGTACCTGCTCATCTG+CGG 0.645210 3_2:-76925159 Msa0426510:CDS
GTCGTGTTTCCTCAACACGA+TGG 0.648614 3_2:-76930977 Msa0426510:five_prime_UTR
AATCTGCTGAAAATCAAACC+AGG 0.658542 3_2:+76930643 None:intergenic
TTTGGCGGAAACATGGCCAG+AGG 0.658754 3_2:+76929220 None:intergenic
CTGTGGACACATGTTCTGCG+AGG 0.696401 3_2:-76925959 Msa0426510:CDS
GAAGTGAAGAATCAACACGA+AGG 0.726784 3_2:+76930889 None:intergenic
GGGTTAGTTGAAGATGACGG+TGG 0.733517 3_2:+76931216 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATTAAGATAAAGAT+GGG + chr3_2:76924922-76924941 None:intergenic 10.0%
!! AATATTGTAATAAGTTTATT+TGG + chr3_2:76927428-76927447 None:intergenic 10.0%
!!! ATCATATTCTTTTTTTTTTA+AGG + chr3_2:76928870-76928889 None:intergenic 10.0%
!! ATATACTAATATTTGTATAA+TGG - chr3_2:76929970-76929989 Msa0426510:intron 10.0%
!! TTATTCTATAATATAAAAGA+AGG + chr3_2:76930797-76930816 None:intergenic 10.0%
!! GAAATTAATTAAGATAAAGA+TGG + chr3_2:76924923-76924942 None:intergenic 15.0%
!! TTAGTAATAACACTATAAAT+TGG - chr3_2:76925147-76925166 Msa0426510:CDS 15.0%
!! TTTCAAAATGAAAATTCTAA+AGG + chr3_2:76926643-76926662 None:intergenic 15.0%
!! AAAACAAAGTTATTCAAATT+TGG + chr3_2:76927150-76927169 None:intergenic 15.0%
!!! AAATTTGAATAACTTTGTTT+TGG - chr3_2:76927149-76927168 Msa0426510:intron 15.0%
!!! AATTTGAATAACTTTGTTTT+GGG - chr3_2:76927150-76927169 Msa0426510:intron 15.0%
!!! AAATGTTTTAAATTGTTTCA+AGG - chr3_2:76928020-76928039 Msa0426510:CDS 15.0%
!!! AATGTTTTAAATTGTTTCAA+GGG - chr3_2:76928021-76928040 Msa0426510:CDS 15.0%
!!! AAAGAAAATGGAATAATTTT+GGG + chr3_2:76928271-76928290 None:intergenic 15.0%
!!! TAAAGAAAATGGAATAATTT+TGG + chr3_2:76928272-76928291 None:intergenic 15.0%
!! CTATAAAAGTTATTGAAAAT+TGG - chr3_2:76928521-76928540 Msa0426510:intron 15.0%
!! AAAGGAATTATATACTTAAA+TGG - chr3_2:76928616-76928635 Msa0426510:intron 15.0%
!! TCTAAAAATGTGTTTATAAA+TGG + chr3_2:76929563-76929582 None:intergenic 15.0%
!!! ATTTAAGACAAATAAACTAT+AGG - chr3_2:76930210-76930229 Msa0426510:intron 15.0%
!! TAGTATAATCTTCAATCATA+TGG - chr3_2:76925626-76925645 Msa0426510:intron 20.0%
!!! TTGTTTTTATTACCTTATCA+AGG + chr3_2:76926223-76926242 None:intergenic 20.0%
!! ATAAGGTAATAAAAACAACA+TGG - chr3_2:76926225-76926244 Msa0426510:intron 20.0%
!!! TTTTATGTTCAGAACAAAAA+TGG + chr3_2:76926379-76926398 None:intergenic 20.0%
!! ATATCATACAGTTAAATTGA+TGG + chr3_2:76926498-76926517 None:intergenic 20.0%
!!! ATATTCATCATTTTGGTTAA+TGG - chr3_2:76926902-76926921 Msa0426510:intron 20.0%
!! TTAAAGACTAAAGTATATCA+AGG - chr3_2:76927070-76927089 Msa0426510:intron 20.0%
!! TGATATTATCACATAAATTG+TGG - chr3_2:76927290-76927309 Msa0426510:intron 20.0%
!! AAATTGTGGAATATATCAAT+TGG - chr3_2:76927304-76927323 Msa0426510:intron 20.0%
!!! ATGTTTCTTTTAGAATTTTC+AGG - chr3_2:76927358-76927377 Msa0426510:intron 20.0%
!!! TGTTTCTTTTAGAATTTTCA+GGG - chr3_2:76927359-76927378 Msa0426510:intron 20.0%
!!! CAATTATTCTAATTCTTTTG+TGG - chr3_2:76927781-76927800 Msa0426510:intron 20.0%
!!! AAGCTTTCATTCTTTAAAAT+TGG - chr3_2:76928209-76928228 Msa0426510:CDS 20.0%
!! AAAAATGATCTGATTAAATC+TGG - chr3_2:76928402-76928421 Msa0426510:intron 20.0%
!!! AATTTTAGAGGTTTAAGATA+AGG - chr3_2:76928551-76928570 Msa0426510:intron 20.0%
!!! ATTTTAGAGGTTTAAGATAA+GGG - chr3_2:76928552-76928571 Msa0426510:intron 20.0%
!!! ATAATAGAACAGCATTTTTA+TGG - chr3_2:76928820-76928839 Msa0426510:intron 20.0%
!!! GTTTTTGTATACTTTTTTTG+TGG - chr3_2:76928969-76928988 Msa0426510:intron 20.0%
!! TAATCTACATATACAAACAA+GGG + chr3_2:76929121-76929140 None:intergenic 20.0%
!! TTAATCTACATATACAAACA+AGG + chr3_2:76929122-76929141 None:intergenic 20.0%
!! CATTTAATTGTGTCAAATTA+AGG - chr3_2:76929262-76929281 Msa0426510:CDS 20.0%
!! AAAATGTGTTTATAAATGGT+GGG + chr3_2:76929559-76929578 None:intergenic 20.0%
!! AAAAATGTGTTTATAAATGG+TGG + chr3_2:76929560-76929579 None:intergenic 20.0%
!! AGAAGTAACAGATAATTATT+TGG - chr3_2:76930238-76930257 Msa0426510:intron 20.0%
!! GAAGTAACAGATAATTATTT+GGG - chr3_2:76930239-76930258 Msa0426510:intron 20.0%
!! GTAAACCTAAAATAATTATG+TGG + chr3_2:76930328-76930347 None:intergenic 20.0%
!! ATAAATTCAGAAGATGAAAA+TGG - chr3_2:76930405-76930424 Msa0426510:intron 20.0%
!!! AAAAGCATACATAAAGAAAT+CGG + chr3_2:76930536-76930555 None:intergenic 20.0%
!!! ATTTCTTTATGTATGCTTTT+CGG - chr3_2:76930536-76930555 Msa0426510:intron 20.0%
!! TAATGTATCAATTATGGAAA+TGG - chr3_2:76930659-76930678 Msa0426510:CDS 20.0%
!! ATTATTACTAAACATTTGGA+CGG + chr3_2:76931018-76931037 None:intergenic 20.0%
!! ATCCATTATTACTAAACATT+TGG + chr3_2:76931022-76931041 None:intergenic 20.0%
!!! AAATGTTTAGTAATAATGGA+TGG - chr3_2:76931021-76931040 Msa0426510:five_prime_UTR 20.0%
!!! TTCTATGAATTTGAGATTAA+AGG - chr3_2:76931045-76931064 Msa0426510:five_prime_UTR 20.0%
!! TGAAAAAGAAAGAAAAGAAA+GGG + chr3_2:76931132-76931151 None:intergenic 20.0%
!! ATGAAAAAGAAAGAAAAGAA+AGG + chr3_2:76931133-76931152 None:intergenic 20.0%
!! ATTAATTCATTATCATCATG+AGG + chr3_2:76931218-76931237 None:intergenic 20.0%
! ATGGGAAATAATAAAAGAGA+AGG + chr3_2:76924904-76924923 None:intergenic 25.0%
! TATCTTGAAGGATAAGATTT+GGG + chr3_2:76924959-76924978 None:intergenic 25.0%
! TTATCTTGAAGGATAAGATT+TGG + chr3_2:76924960-76924979 None:intergenic 25.0%
! TAAGGATCATTACAAAAACA+CGG + chr3_2:76925950-76925969 None:intergenic 25.0%
!! TTTTATTACCTTATCAAGGA+GGG + chr3_2:76926219-76926238 None:intergenic 25.0%
!! TTTTTATTACCTTATCAAGG+AGG + chr3_2:76926220-76926239 None:intergenic 25.0%
! AGTTAGTGTGTTATGTTAAT+AGG - chr3_2:76926413-76926432 Msa0426510:intron 25.0%
! GTTAGTGTGTTATGTTAATA+GGG - chr3_2:76926414-76926433 Msa0426510:intron 25.0%
! TTAGTGTGTTATGTTAATAG+GGG - chr3_2:76926415-76926434 Msa0426510:intron 25.0%
!! ATACAGTTAAATTGATGGAT+TGG + chr3_2:76926493-76926512 None:intergenic 25.0%
! GATAAAGCAAATAAATTGTC+TGG + chr3_2:76926978-76926997 None:intergenic 25.0%
! GACAATTTATTTGCTTTATC+AGG - chr3_2:76926978-76926997 Msa0426510:intron 25.0%
!! AGTCTTTTGTATTTAATCAG+TGG - chr3_2:76927117-76927136 Msa0426510:intron 25.0%
!! GTCTTTTGTATTTAATCAGT+GGG - chr3_2:76927118-76927137 Msa0426510:intron 25.0%
! ATCAATTAAAATGAGAAGTG+CGG + chr3_2:76927274-76927293 None:intergenic 25.0%
!!! AAGTTTTGATCCAAAATTTG+CGG - chr3_2:76927459-76927478 Msa0426510:intron 25.0%
! GCATGAAAAATACTTCAAAT+TGG + chr3_2:76927500-76927519 None:intergenic 25.0%
! AAACTATACTTGAAAACTAC+AGG + chr3_2:76927982-76928001 None:intergenic 25.0%
! AGTCCATGTAAAAGAAAAAT+CGG + chr3_2:76928116-76928135 None:intergenic 25.0%
!! TTTTTCTTTTACATGGACTT+TGG - chr3_2:76928117-76928136 Msa0426510:intron 25.0%
! TCACCTAATAAACATATAGA+CGG + chr3_2:76928296-76928315 None:intergenic 25.0%
!! ATTGGATATGCAAATTTTAG+AGG - chr3_2:76928539-76928558 Msa0426510:intron 25.0%
! TCATCTATGCAATCAAATAA+AGG - chr3_2:76928598-76928617 Msa0426510:intron 25.0%
! AGATTAACAAAGTATGTTGT+GGG + chr3_2:76928661-76928680 None:intergenic 25.0%
! TAAATTAATGCAACAGTCTT+CGG - chr3_2:76928696-76928715 Msa0426510:intron 25.0%
! AAAGTTTCAAATGCTTATCA+AGG - chr3_2:76928930-76928949 Msa0426510:intron 25.0%
! AAGTTTCAAATGCTTATCAA+GGG - chr3_2:76928931-76928950 Msa0426510:intron 25.0%
! CAAGTAAAAACTATGAAGAT+TGG + chr3_2:76929024-76929043 None:intergenic 25.0%
!! TCTTCATAGTTTTTACTTGT+TGG - chr3_2:76929025-76929044 Msa0426510:intron 25.0%
!!! TTATAGAGGTTTTAGAAGTA+AGG - chr3_2:76929209-76929228 Msa0426510:CDS 25.0%
! TACAAATGTTTATAAGTGGT+GGG + chr3_2:76929343-76929362 None:intergenic 25.0%
! AAATGTTAAGAGTTTCACAT+TGG + chr3_2:76929597-76929616 None:intergenic 25.0%
!!! AGTGGTTACATTAGTTTTTA+AGG - chr3_2:76929647-76929666 Msa0426510:intron 25.0%
!!! CTTTTATTTTCTTAAGTGCT+TGG - chr3_2:76929779-76929798 Msa0426510:intron 25.0%
! GGATAATGTATACTTTCATA+AGG - chr3_2:76929833-76929852 Msa0426510:intron 25.0%
! GGATTCTTTATATGATTATG+TGG - chr3_2:76929854-76929873 Msa0426510:intron 25.0%
! AGCAGCATTAAATAACAAAA+GGG + chr3_2:76929943-76929962 None:intergenic 25.0%
! TAGCAGCATTAAATAACAAA+AGG + chr3_2:76929944-76929963 None:intergenic 25.0%
!!! TTTTTCACTAGTCTTTTTAC+CGG - chr3_2:76929999-76930018 Msa0426510:intron 25.0%
! TAACAGATAATTATTTGGGT+TGG - chr3_2:76930243-76930262 Msa0426510:intron 25.0%
! TAATCAATTGAGGCAATTTA+GGG + chr3_2:76930292-76930311 None:intergenic 25.0%
! ATAATCAATTGAGGCAATTT+AGG + chr3_2:76930293-76930312 None:intergenic 25.0%
! ACAATTCTGATAATCAATTG+AGG + chr3_2:76930302-76930321 None:intergenic 25.0%
!! GTTGTCCACATAATTATTTT+AGG - chr3_2:76930320-76930339 Msa0426510:intron 25.0%
!!! ATGCCAAATTTTAAGTGTAA+CGG + chr3_2:76930355-76930374 None:intergenic 25.0%
! GGAAGATAATGTATCAATTA+TGG - chr3_2:76930653-76930672 Msa0426510:CDS 25.0%
!!! TAGACTCAGTTTTAAAGTTT+GGG + chr3_2:76930751-76930770 None:intergenic 25.0%
!!! ATAGACTCAGTTTTAAAGTT+TGG + chr3_2:76930752-76930771 None:intergenic 25.0%
!!! AAACTTTAAAACTGAGTCTA+TGG - chr3_2:76930751-76930770 Msa0426510:CDS 25.0%
! GTCCAAATGTTTAGTAATAA+TGG - chr3_2:76931017-76931036 Msa0426510:five_prime_UTR 25.0%
!!! TCTTTTTCATTAAAACTGCA+AGG - chr3_2:76931143-76931162 Msa0426510:five_prime_UTR 25.0%
! GTTTATCACAATTGTTATCA+TGG + chr3_2:76931282-76931301 None:intergenic 25.0%
ATTAATGAAACTTGGGAAAG+GGG + chr3_2:76924881-76924900 None:intergenic 30.0%
GATTAATGAAACTTGGGAAA+GGG + chr3_2:76924882-76924901 None:intergenic 30.0%
GAGAAGGATTAATGAAACTT+GGG + chr3_2:76924888-76924907 None:intergenic 30.0%
AGAGAAGGATTAATGAAACT+TGG + chr3_2:76924889-76924908 None:intergenic 30.0%
AACTAAAAAACTGACGCAAA+AGG - chr3_2:76925023-76925042 Msa0426510:three_prime_UTR 30.0%
GAAAAAGAAAACAACATCCT+TGG - chr3_2:76925045-76925064 Msa0426510:three_prime_UTR 30.0%
ATCCTTGGTCAAATCAATTA+AGG - chr3_2:76925060-76925079 Msa0426510:three_prime_UTR 30.0%
!! TACCTTAATTGATTTGACCA+AGG + chr3_2:76925065-76925084 None:intergenic 30.0%
TTGGTCAAATCAATTAAGGT+AGG - chr3_2:76925064-76925083 Msa0426510:three_prime_UTR 30.0%
AAAATCAAACCAGGAAAAAG+TGG + chr3_2:76925425-76925444 None:intergenic 30.0%
AAATCATACATTCCATGTGA+CGG + chr3_2:76925516-76925535 None:intergenic 30.0%
! TTCTTTTGTCCTTCAAATGT+TGG - chr3_2:76925553-76925572 Msa0426510:intron 30.0%
TCAAATAAGCAAATCCAAAC+AGG - chr3_2:76925907-76925926 Msa0426510:intron 30.0%
AGCTTAGAGATTATCAAGTA+AGG + chr3_2:76925968-76925987 None:intergenic 30.0%
TTAATTGCGTAGTGATTCTA+TGG - chr3_2:76926277-76926296 Msa0426510:intron 30.0%
TTTCCTCTAAGTTTCTACTT+CGG - chr3_2:76926344-76926363 Msa0426510:intron 30.0%
TATGTTCAGAACAAAAATGG+TGG + chr3_2:76926376-76926395 None:intergenic 30.0%
TAAAGGACTTGCATAGTTAT+GGG + chr3_2:76926626-76926645 None:intergenic 30.0%
! TTTTTCGTCATCTTTTTGTG+AGG + chr3_2:76926700-76926719 None:intergenic 30.0%
GATGACGAAAAAAATTAGAG+AGG - chr3_2:76926708-76926727 Msa0426510:intron 30.0%
! AATTCGATTTCTGTTTTGCA+GGG - chr3_2:76926734-76926753 Msa0426510:intron 30.0%
! GAACGCAATATTCATCATTT+TGG - chr3_2:76926895-76926914 Msa0426510:intron 30.0%
!!! CATCATTTTGGTTAATGGTA+TGG - chr3_2:76926907-76926926 Msa0426510:intron 30.0%
ACTAAAGTATATCAAGGATG+TGG - chr3_2:76927076-76927095 Msa0426510:intron 30.0%
GTTAGATAACCAACCAATAA+TGG + chr3_2:76927252-76927271 None:intergenic 30.0%
!! AGTTTTGATCCAAAATTTGC+GGG - chr3_2:76927460-76927479 Msa0426510:intron 30.0%
TAAATGCAAACAGGCAAATT+TGG + chr3_2:76927554-76927573 None:intergenic 30.0%
AAAACTGCTTAAATGCAAAC+AGG + chr3_2:76927563-76927582 None:intergenic 30.0%
ACACACATAAATAATACACC+AGG + chr3_2:76927727-76927746 None:intergenic 30.0%
TCATTGTCTTTCAGATACAA+TGG - chr3_2:76927843-76927862 Msa0426510:intron 30.0%
!! TTGCTGATTTACTGCAAAAA+TGG - chr3_2:76927898-76927917 Msa0426510:CDS 30.0%
!!! GTACCGATTTTTCTTTTACA+TGG - chr3_2:76928110-76928129 Msa0426510:intron 30.0%
ATATAGACGGGTAAAGAAAA+TGG + chr3_2:76928283-76928302 None:intergenic 30.0%
TACCCGTCTATATGTTTATT+AGG - chr3_2:76928290-76928309 Msa0426510:intron 30.0%
CACCTAATAAACATATAGAC+GGG + chr3_2:76928295-76928314 None:intergenic 30.0%
!! GTCTTCTGATAATGCTTTTA+AGG + chr3_2:76928334-76928353 None:intergenic 30.0%
TCAGAAGACGAAATTCTTTA+TGG - chr3_2:76928345-76928364 Msa0426510:intron 30.0%
ATAGATGAAGATTTGAAGGA+GGG + chr3_2:76928586-76928605 None:intergenic 30.0%
TTGCATAGATGAAGATTTGA+AGG + chr3_2:76928590-76928609 None:intergenic 30.0%
CAGATTAACAAAGTATGTTG+TGG + chr3_2:76928662-76928681 None:intergenic 30.0%
TCGGTTATAGTAAAAAGATG+TGG - chr3_2:76928715-76928734 Msa0426510:intron 30.0%
! TAGAACAGCATTTTTATGGA+TGG - chr3_2:76928824-76928843 Msa0426510:intron 30.0%
AAGCTTTCAGAAAAAAGATG+AGG + chr3_2:76928907-76928926 None:intergenic 30.0%
AAAAACCGTAACCAAATAAG+TGG + chr3_2:76928998-76929017 None:intergenic 30.0%
GACACAATTAAATGCAAACA+AGG + chr3_2:76929256-76929275 None:intergenic 30.0%
CTACAAATGTTTATAAGTGG+TGG + chr3_2:76929344-76929363 None:intergenic 30.0%
CACCACTTATAAACATTTGT+AGG - chr3_2:76929342-76929361 Msa0426510:intron 30.0%
GACCTACAAATGTTTATAAG+TGG + chr3_2:76929347-76929366 None:intergenic 30.0%
!! CAAGTCGATTTTGTAAGAAT+GGG + chr3_2:76929522-76929541 None:intergenic 30.0%
!! ACAAGTCGATTTTGTAAGAA+TGG + chr3_2:76929523-76929542 None:intergenic 30.0%
GTATTAGTGTTTGTAAACAG+TGG - chr3_2:76929629-76929648 Msa0426510:intron 30.0%
!! TTGCTTTTACATTGCTTTGT+TGG - chr3_2:76929745-76929764 Msa0426510:intron 30.0%
! CTTTCATTTTCTTAAGTGCT+TGG - chr3_2:76929812-76929831 Msa0426510:intron 30.0%
AGCATTAAATAACAAAAGGG+AGG + chr3_2:76929940-76929959 None:intergenic 30.0%
! TAAGTTGAGTATCTAAATGC+AGG - chr3_2:76930028-76930047 Msa0426510:intron 30.0%
AATCAATTGAGGCAATTTAG+GGG + chr3_2:76930291-76930310 None:intergenic 30.0%
TCTCCGTTACACTTAAAATT+TGG - chr3_2:76930349-76930368 Msa0426510:intron 30.0%
! ATATTTGCTAGATATTGCAG+TGG - chr3_2:76930375-76930394 Msa0426510:intron 30.0%
CAAGTCTAATAAATAGTCTG+AGG + chr3_2:76930492-76930511 None:intergenic 30.0%
! AAGTGTTGCATTGTTAAATG+TGG - chr3_2:76930574-76930593 Msa0426510:CDS 30.0%
AAATGTGGCTAATAATTGTG+TGG - chr3_2:76930589-76930608 Msa0426510:CDS 30.0%
!! AAATCACATTTCTGGTCATT+AGG + chr3_2:76930727-76930746 None:intergenic 30.0%
!!! AGACTCAGTTTTAAAGTTTG+GGG + chr3_2:76930750-76930769 None:intergenic 30.0%
! TTTTCATTAAAACTGCAAGG+AGG - chr3_2:76931146-76931165 Msa0426510:five_prime_UTR 30.0%
GGATTAATGAAACTTGGGAA+AGG + chr3_2:76924883-76924902 None:intergenic 35.0%
AGAAGAAGAAGAAGAAGAAG+AGG + chr3_2:76925290-76925309 None:intergenic 35.0%
CTTCTTCTTCTTCATCATCA+CGG - chr3_2:76925299-76925318 Msa0426510:intron 35.0%
ACATCAGTTAAAGGGACTAA+CGG + chr3_2:76925376-76925395 None:intergenic 35.0%
AATCTGCTGAAAATCAAACC+AGG + chr3_2:76925434-76925453 None:intergenic 35.0%
! TTTTCAGCAGATTGCTAAGA+TGG - chr3_2:76925441-76925460 Msa0426510:intron 35.0%
ATCAACAACAAGAGCGAAAA+AGG + chr3_2:76925481-76925500 None:intergenic 35.0%
TTGTCCTTCAAATGTTGGAT+TGG - chr3_2:76925558-76925577 Msa0426510:intron 35.0%
CAATCCAATCCAACATTTGA+AGG + chr3_2:76925565-76925584 None:intergenic 35.0%
! TCAAATGTTGGATTGGATTG+TGG - chr3_2:76925565-76925584 Msa0426510:intron 35.0%
TGTGAGCAACAAAATGAAGT+TGG + chr3_2:76925657-76925676 None:intergenic 35.0%
!! CACCGTTACTTTGAGATATT+GGG - chr3_2:76925680-76925699 Msa0426510:intron 35.0%
TGCCCAATATCTCAAAGTAA+CGG + chr3_2:76925685-76925704 None:intergenic 35.0%
! TTTGAGATATTGGGCATGTT+TGG - chr3_2:76925689-76925708 Msa0426510:intron 35.0%
! CTAAACTAGCTTGCCAAAAT+TGG + chr3_2:76926079-76926098 None:intergenic 35.0%
GTAGTGATTCTATGGTCTAA+GGG - chr3_2:76926285-76926304 Msa0426510:intron 35.0%
ATAGGGTTTGAGTGATAAAG+TGG + chr3_2:76926455-76926474 None:intergenic 35.0%
! GGATTCGAAGGTATAACATA+GGG + chr3_2:76926472-76926491 None:intergenic 35.0%
! TGGATTCGAAGGTATAACAT+AGG + chr3_2:76926473-76926492 None:intergenic 35.0%
!! AATTGATGGATTGGATTCGA+AGG + chr3_2:76926484-76926503 None:intergenic 35.0%
GCAGATTTCTTTGTCACAAT+TGG - chr3_2:76926534-76926553 Msa0426510:intron 35.0%
CTAAAGGACTTGCATAGTTA+TGG + chr3_2:76926627-76926646 None:intergenic 35.0%
! CAATTCGATTTCTGTTTTGC+AGG - chr3_2:76926733-76926752 Msa0426510:intron 35.0%
CTATGCATTTACGAGTGTTA+TGG - chr3_2:76926812-76926831 Msa0426510:intron 35.0%
!! TGATGATGTTTTATTCCCTC+TGG - chr3_2:76926838-76926857 Msa0426510:intron 35.0%
! CAAAAGCAACACCATCTTTT+GGG - chr3_2:76926873-76926892 Msa0426510:intron 35.0%
AATATTGCGTTCCCAAAAGA+TGG + chr3_2:76926887-76926906 None:intergenic 35.0%
AAGTATATCAAGGATGTGGA+AGG - chr3_2:76927080-76927099 Msa0426510:intron 35.0%
TTAACAGTTCTTTGCCAATG+CGG - chr3_2:76927178-76927197 Msa0426510:intron 35.0%
AAATAATACACCAGGACACT+GGG + chr3_2:76927719-76927738 None:intergenic 35.0%
TAAATAATACACCAGGACAC+TGG + chr3_2:76927720-76927739 None:intergenic 35.0%
GTGTTGTCTATTCTCGATAT+TGG - chr3_2:76927743-76927762 Msa0426510:CDS 35.0%
! TCTCGATATTGGTGTTTCTA+TGG - chr3_2:76927754-76927773 Msa0426510:CDS 35.0%
TTGTGGTGAGAAACAATTAC+TGG - chr3_2:76927798-76927817 Msa0426510:intron 35.0%
! CAATTACTGGTTAGTATCCA+TGG - chr3_2:76927811-76927830 Msa0426510:intron 35.0%
GACAATGAATATTGTGACCA+TGG + chr3_2:76927831-76927850 None:intergenic 35.0%
AAGAAAAATCGGTACCAAAC+TGG + chr3_2:76928105-76928124 None:intergenic 35.0%
CTCTTCTCATCAATTATCAC+AGG - chr3_2:76928144-76928163 Msa0426510:intron 35.0%
TGTTTATGCTACATCAGAAC+AGG - chr3_2:76928368-76928387 Msa0426510:intron 35.0%
CATAGATGAAGATTTGAAGG+AGG + chr3_2:76928587-76928606 None:intergenic 35.0%
CATGATGACACAATGCATTA+TGG + chr3_2:76928759-76928778 None:intergenic 35.0%
! AGCATTTTTATGGATGGTGT+GGG - chr3_2:76928830-76928849 Msa0426510:intron 35.0%
!! TTTTGTGGATGCCACTTATT+TGG - chr3_2:76928984-76929003 Msa0426510:intron 35.0%
AAAACCTCTATAAGCTGACT+CGG + chr3_2:76929202-76929221 None:intergenic 35.0%
!!! TAGAGGTTTTAGAAGTAAGG+AGG - chr3_2:76929212-76929231 Msa0426510:CDS 35.0%
!!! AGAGGTTTTAGAAGTAAGGA+GGG - chr3_2:76929213-76929232 Msa0426510:CDS 35.0%
AATTCAAGCCCTTACAAAAC+CGG - chr3_2:76929297-76929316 Msa0426510:CDS 35.0%
TGTGATGCCATCTTAGAATT+TGG - chr3_2:76929485-76929504 Msa0426510:CDS 35.0%
GTGATGCCATCTTAGAATTT+GGG - chr3_2:76929486-76929505 Msa0426510:CDS 35.0%
!! CGATTTTGTAAGAATGGGTT+AGG + chr3_2:76929517-76929536 None:intergenic 35.0%
! ATGCTTGAATGGTTAGTTGA+GGG + chr3_2:76929708-76929727 None:intergenic 35.0%
! TACATTGCTTTGTTGGATTG+TGG - chr3_2:76929752-76929771 Msa0426510:intron 35.0%
ATATGATTATGTGGAAGAGC+TGG - chr3_2:76929863-76929882 Msa0426510:intron 35.0%
! AGCATGAGAATAGGGTATTA+GGG - chr3_2:76930612-76930631 Msa0426510:CDS 35.0%
ATAAATAGCACTCTCTGCTT+TGG - chr3_2:76930700-76930719 Msa0426510:CDS 35.0%
TTAAAACTGAGTCTATGGCA+TGG - chr3_2:76930756-76930775 Msa0426510:CDS 35.0%
!! CTTTACCAATTTGTTTTCCC+AGG - chr3_2:76930855-76930874 Msa0426510:exon 35.0%
TCAAACCTGGGAAAACAAAT+TGG + chr3_2:76930863-76930882 None:intergenic 35.0%
!! AAGGGGTTAGTTGAAGATGA+CGG + chr3_2:76924864-76924883 None:intergenic 40.0%
AAGCGTTTGCGTTATCTTGA+AGG + chr3_2:76924971-76924990 None:intergenic 40.0%
ATTCTGATACCATCGTGTTG+AGG + chr3_2:76925109-76925128 None:intergenic 40.0%
GAAGTGAAGAATCAACACGA+AGG + chr3_2:76925188-76925207 None:intergenic 40.0%
! GAATGTGATGTTCTCTGAAG+AGG - chr3_2:76925321-76925340 Msa0426510:intron 40.0%
GTCCCTTTAACTGATGTTGT+CGG - chr3_2:76925379-76925398 Msa0426510:intron 40.0%
CACCGACAACATCAGTTAAA+GGG + chr3_2:76925384-76925403 None:intergenic 40.0%
!! GCACCGTTACTTTGAGATAT+TGG - chr3_2:76925679-76925698 Msa0426510:intron 40.0%
!! ATTAACATGATGGGCCTGTT+TGG + chr3_2:76925924-76925943 None:intergenic 40.0%
! ACACGGAGCATTAACATGAT+GGG + chr3_2:76925933-76925952 None:intergenic 40.0%
! AACACGGAGCATTAACATGA+TGG + chr3_2:76925934-76925953 None:intergenic 40.0%
TCTAAGCTTTACTCCCACTT+GGG - chr3_2:76925980-76925999 Msa0426510:CDS 40.0%
CTTCTTCACTGAGTAAAGCT+TGG + chr3_2:76926130-76926149 None:intergenic 40.0%
CGTAGTGATTCTATGGTCTA+AGG - chr3_2:76926284-76926303 Msa0426510:intron 40.0%
GTGTATCAGCTGTAATGTTC+AGG - chr3_2:76926556-76926575 Msa0426510:intron 40.0%
! CATCTTTTTGTGAGGAGGAT+GGG + chr3_2:76926692-76926711 None:intergenic 40.0%
! TCATCTTTTTGTGAGGAGGA+TGG + chr3_2:76926693-76926712 None:intergenic 40.0%
! TTCGTCATCTTTTTGTGAGG+AGG + chr3_2:76926697-76926716 None:intergenic 40.0%
AAAAGAGAGAGCAAGAAGAG+CGG + chr3_2:76926774-76926793 None:intergenic 40.0%
!!! AAAGATGGTGTTGCTTTTGG+CGG + chr3_2:76926872-76926891 None:intergenic 40.0%
!!! CCAAAAGATGGTGTTGCTTT+TGG + chr3_2:76926875-76926894 None:intergenic 40.0%
! CCAAAAGCAACACCATCTTT+TGG - chr3_2:76926872-76926891 Msa0426510:intron 40.0%
TAACAGTTCTTTGCCAATGC+GGG - chr3_2:76927179-76927198 Msa0426510:intron 40.0%
TCCTGACAATTGCATCACTT+GGG - chr3_2:76927224-76927243 Msa0426510:intron 40.0%
! AATGCAAGACCCGCAAATTT+TGG + chr3_2:76927472-76927491 None:intergenic 40.0%
! CTTAGCTGCTGCAATGTTTT+AGG - chr3_2:76927625-76927644 Msa0426510:intron 40.0%
AATAATACACCAGGACACTG+GGG + chr3_2:76927718-76927737 None:intergenic 40.0%
GTCTTTCAGATACAATGGTG+CGG - chr3_2:76927848-76927867 Msa0426510:intron 40.0%
CAAGGGTCAAATCTTAACTC+TGG - chr3_2:76928038-76928057 Msa0426510:intron 40.0%
GTTAACATCTGCAGTTGAGA+AGG - chr3_2:76928185-76928204 Msa0426510:CDS 40.0%
AAAGTATGTTGTGGGCAAAG+AGG + chr3_2:76928653-76928672 None:intergenic 40.0%
! CAGCATTTTTATGGATGGTG+TGG - chr3_2:76928829-76928848 Msa0426510:intron 40.0%
! GCATTTTTATGGATGGTGTG+GGG - chr3_2:76928831-76928850 Msa0426510:intron 40.0%
TCAAATGCTTATCAAGGGAC+AGG - chr3_2:76928936-76928955 Msa0426510:intron 40.0%
CAAATGCTTATCAAGGGACA+GGG - chr3_2:76928937-76928956 Msa0426510:intron 40.0%
! GGATGCCACTTATTTGGTTA+CGG - chr3_2:76928990-76929009 Msa0426510:intron 40.0%
! CCAAATTTGAAGCAAGAGTC+AGG + chr3_2:76929168-76929187 None:intergenic 40.0%
CCTGACTCTTGCTTCAAATT+TGG - chr3_2:76929165-76929184 Msa0426510:intron 40.0%
!! CTTACAAGCCGGTTTTGTAA+GGG + chr3_2:76929308-76929327 None:intergenic 40.0%
TGTGTTAAGTGTCCCACATT+GGG + chr3_2:76929378-76929397 None:intergenic 40.0%
TAACACACTTACTGACACCT+AGG - chr3_2:76929391-76929410 Msa0426510:intron 40.0%
AGCCTATCCAAGATCTGTTT+GGG + chr3_2:76929466-76929485 None:intergenic 40.0%
TGCCATCTTAGAATTTGGGA+TGG - chr3_2:76929490-76929509 Msa0426510:CDS 40.0%
! GCCATCTTAGAATTTGGGAT+GGG - chr3_2:76929491-76929510 Msa0426510:CDS 40.0%
GGTTTGAACGACTTCCTAAT+TGG - chr3_2:76929668-76929687 Msa0426510:intron 40.0%
AGGTTGAAGGAGTTCCAATT+AGG + chr3_2:76929685-76929704 None:intergenic 40.0%
! GATGCTTGAATGGTTAGTTG+AGG + chr3_2:76929709-76929728 None:intergenic 40.0%
AACCATTCAAGCATCCTACT+TGG - chr3_2:76929714-76929733 Msa0426510:intron 40.0%
ACCATTCAAGCATCCTACTT+GGG - chr3_2:76929715-76929734 Msa0426510:intron 40.0%
!! AGGTCTTTGAAACATCGACA+CGG - chr3_2:76929886-76929905 Msa0426510:intron 40.0%
GATACTCAACTTAGAACTGC+CGG + chr3_2:76930021-76930040 None:intergenic 40.0%
TAGGAACATGCATCTTCTCT+TGG + chr3_2:76930085-76930104 None:intergenic 40.0%
GAAGATGCATGTTCCTATCT+TGG - chr3_2:76930088-76930107 Msa0426510:intron 40.0%
TGAGGATGCATAACAAGCAA+GGG + chr3_2:76930474-76930493 None:intergenic 40.0%
ATCGGAAACTATCAAGAAGC+AGG + chr3_2:76930518-76930537 None:intergenic 40.0%
ATTGTGTGGAGCATGAGAAT+AGG - chr3_2:76930603-76930622 Msa0426510:CDS 40.0%
TTGTGTGGAGCATGAGAATA+GGG - chr3_2:76930604-76930623 Msa0426510:CDS 40.0%
! GAGCATGAGAATAGGGTATT+AGG - chr3_2:76930611-76930630 Msa0426510:CDS 40.0%
! TGAGAATAGGGTATTAGGGA+AGG - chr3_2:76930616-76930635 Msa0426510:CDS 40.0%
GTATTAGGGAAGGAGGTAAT+TGG - chr3_2:76930626-76930645 Msa0426510:CDS 40.0%
GTTTGGGGAAATCACATTTC+TGG + chr3_2:76930735-76930754 None:intergenic 40.0%
GTACATTCTCTCTCAAACCT+GGG + chr3_2:76930875-76930894 None:intergenic 40.0%
AGTACATTCTCTCTCAAACC+TGG + chr3_2:76930876-76930895 None:intergenic 40.0%
! ACTTGTTGATCCATCTCCAA+AGG + chr3_2:76930942-76930961 None:intergenic 40.0%
ATGCGTTTCGACGACGTATA+AGG + chr3_2:76924997-76925016 None:intergenic 45.0%
CCACCGACAACATCAGTTAA+AGG + chr3_2:76925385-76925404 None:intergenic 45.0%
CCTTTAACTGATGTTGTCGG+TGG - chr3_2:76925382-76925401 Msa0426510:intron 45.0%
!!! ACAGCTTCTCCACTTTTTCC+TGG - chr3_2:76925413-76925432 Msa0426510:intron 45.0%
!!! TGTTTTGATACGCCGTCACA+TGG - chr3_2:76925501-76925520 Msa0426510:intron 45.0%
CTCTAAGCTTTACTCCCACT+TGG - chr3_2:76925979-76925998 Msa0426510:CDS 45.0%
ATCAAACCTGAGACCTTGAG+AGG + chr3_2:76926045-76926064 None:intergenic 45.0%
! ATTCTCCCGGATGCCAATTT+TGG - chr3_2:76926063-76926082 Msa0426510:intron 45.0%
AGCTTGCCAAAATTGGCATC+CGG + chr3_2:76926072-76926091 None:intergenic 45.0%
GTCTTCATCCCTCCTTGATA+AGG - chr3_2:76926208-76926227 Msa0426510:intron 45.0%
GATTCTATGGTCTAAGGGCA+TGG - chr3_2:76926290-76926309 Msa0426510:intron 45.0%
CAGCCGAAGTAGAAACTTAG+AGG + chr3_2:76926350-76926369 None:intergenic 45.0%
CAAGAAACATACTGCGCTGA+AGG - chr3_2:76926593-76926612 Msa0426510:intron 45.0%
!!! TGTTGCTTTTGGCGGAAACA+TGG + chr3_2:76926864-76926883 None:intergenic 45.0%
GTGATGCAATTGTCAGGAGA+AGG + chr3_2:76927222-76927241 None:intergenic 45.0%
CTCCTGACAATTGCATCACT+TGG - chr3_2:76927223-76927242 Msa0426510:intron 45.0%
CCTGACAATTGCATCACTTG+GGG - chr3_2:76927225-76927244 Msa0426510:intron 45.0%
CATCACTTGGGGTCCATTAT+TGG - chr3_2:76927236-76927255 Msa0426510:intron 45.0%
ACTTGGGGTCCATTATTGGT+TGG - chr3_2:76927240-76927259 Msa0426510:intron 45.0%
GTTACTCTTGTATGCCATGC+AGG - chr3_2:76927387-76927406 Msa0426510:intron 45.0%
TGCCATGCAGGAAACAATGA+CGG - chr3_2:76927399-76927418 Msa0426510:intron 45.0%
TTCCGTCATTGTTTCCTGCA+TGG + chr3_2:76927404-76927423 None:intergenic 45.0%
!! CAGGCTTGTTGTGAAAACCA+AGG + chr3_2:76927963-76927982 None:intergenic 45.0%
AAGATTTGAAGGAGGGACAC+AGG + chr3_2:76928579-76928598 None:intergenic 45.0%
GTAAGGAGGGAAGATCTTTG+TGG - chr3_2:76929226-76929245 Msa0426510:CDS 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG + chr3_2:76929309-76929328 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG - chr3_2:76929306-76929325 Msa0426510:CDS 45.0%
AGTCTCATCACCTTACAAGC+CGG + chr3_2:76929319-76929338 None:intergenic 45.0%
AGGTCATATCTCACCCAATG+TGG - chr3_2:76929362-76929381 Msa0426510:intron 45.0%
GGTCATATCTCACCCAATGT+GGG - chr3_2:76929363-76929382 Msa0426510:intron 45.0%
GTGTGTTAAGTGTCCCACAT+TGG + chr3_2:76929379-76929398 None:intergenic 45.0%
ACTTACTGACACCTAGGACT+GGG - chr3_2:76929397-76929416 Msa0426510:intron 45.0%
AGCGATGATCTGATAGCATG+TGG - chr3_2:76929440-76929459 Msa0426510:intron 45.0%
CAGCCTATCCAAGATCTGTT+TGG + chr3_2:76929467-76929486 None:intergenic 45.0%
! GCCCATCCCAAATTCTAAGA+TGG + chr3_2:76929495-76929514 None:intergenic 45.0%
! CTTGAATGGTTAGTTGAGGG+AGG + chr3_2:76929705-76929724 None:intergenic 45.0%
TCCCAAGTAGGATGCTTGAA+TGG + chr3_2:76929719-76929738 None:intergenic 45.0%
AAGCAAGAACTGTCCCAAGT+AGG + chr3_2:76929731-76929750 None:intergenic 45.0%
TGATTATGTGGAAGAGCTGG+AGG - chr3_2:76929866-76929885 Msa0426510:intron 45.0%
GGGGATATGCCTTATACTGA+AGG + chr3_2:76930272-76930291 None:intergenic 45.0%
CTGAGGATGCATAACAAGCA+AGG + chr3_2:76930475-76930494 None:intergenic 45.0%
! GAATAGGGTATTAGGGAAGG+AGG - chr3_2:76930619-76930638 Msa0426510:CDS 45.0%
GGGAAGGAGGTAATTGGTTA+TGG - chr3_2:76930632-76930651 Msa0426510:CDS 45.0%
TGAGAGAGAATGTACTTGCC+CGG - chr3_2:76930880-76930899 Msa0426510:five_prime_UTR 45.0%
!! AAAAAATAAAAATAAGTTTA+TGG - chr3_2:76931072-76931091 Msa0426510:five_prime_UTR 5.0%
!! GGGTTAGTTGAAGATGACGG+TGG + chr3_2:76924861-76924880 None:intergenic 50.0%
GTCGTGTTTCCTCAACACGA+TGG - chr3_2:76925097-76925116 Msa0426510:exon 50.0%
TGATCATGATTCCTCGCACG+TGG - chr3_2:76925221-76925240 Msa0426510:intron 50.0%
! AGCTGCTGCTTCTCAACAAG+AGG - chr3_2:76925255-76925274 Msa0426510:intron 50.0%
AGCTTTACTCCCACTTGGGT+TGG - chr3_2:76925984-76926003 Msa0426510:CDS 50.0%
!! TTGGGTTGGTCTGGTGGTAT+TGG - chr3_2:76925998-76926017 Msa0426510:CDS 50.0%
!! TTGGTCTGGTGGTATTGGCT+TGG - chr3_2:76926003-76926022 Msa0426510:CDS 50.0%
!! TGGTCTGGTGGTATTGGCTT+GGG - chr3_2:76926004-76926023 Msa0426510:CDS 50.0%
GGTCTCAGGTTTGATTCTCC+CGG - chr3_2:76926050-76926069 Msa0426510:intron 50.0%
GCTTGCCAAAATTGGCATCC+GGG + chr3_2:76926071-76926090 None:intergenic 50.0%
AGTTCTTTGCCAATGCGGGT+TGG - chr3_2:76927183-76927202 Msa0426510:intron 50.0%
CCCCAAGTGATGCAATTGTC+AGG + chr3_2:76927228-76927247 None:intergenic 50.0%
GCTATTGTGTGCGCTGTTGA+TGG - chr3_2:76927330-76927349 Msa0426510:intron 50.0%
AGATACAATGGTGCGGCAAG+TGG - chr3_2:76927855-76927874 Msa0426510:intron 50.0%
TAACCCGTCGACGGAAGTTA+TGG + chr3_2:76927930-76927949 None:intergenic 50.0%
! ATAACTTCCGTCGACGGGTT+AGG - chr3_2:76927929-76927948 Msa0426510:CDS 50.0%
AACTACTCCTAACCCGTCGA+CGG + chr3_2:76927939-76927958 None:intergenic 50.0%
! CGGGTTAGGAGTAGTTTCCT+TGG - chr3_2:76927943-76927962 Msa0426510:CDS 50.0%
CTTTCTTGCCAGCACCAGTT+TGG - chr3_2:76928088-76928107 Msa0426510:intron 50.0%
AATCGGTACCAAACTGGTGC+TGG + chr3_2:76928099-76928118 None:intergenic 50.0%
TTTATGGATGGTGTGGGGAC+TGG - chr3_2:76928836-76928855 Msa0426510:intron 50.0%
TTATGGATGGTGTGGGGACT+GGG - chr3_2:76928837-76928856 Msa0426510:intron 50.0%
TCAAGGGACAGGGAAACGTA+AGG - chr3_2:76928947-76928966 Msa0426510:intron 50.0%
TCTGCCGAGTCAGCTTATAG+AGG - chr3_2:76929195-76929214 Msa0426510:CDS 50.0%
CACTTACTGACACCTAGGAC+TGG - chr3_2:76929396-76929415 Msa0426510:intron 50.0%
CATGTGGCCCAAACAGATCT+TGG - chr3_2:76929456-76929475 Msa0426510:intron 50.0%
GGCCCAAACAGATCTTGGAT+AGG - chr3_2:76929461-76929480 Msa0426510:intron 50.0%
! GGTTAGTTGAGGGAGGTTGA+AGG + chr3_2:76929698-76929717 None:intergenic 50.0%
TAAATGCAGGTACGTGCTGC+TGG - chr3_2:76930041-76930060 Msa0426510:intron 50.0%
! GTTCCTATCTTGGTTCGCTG+TGG - chr3_2:76930098-76930117 Msa0426510:intron 50.0%
TGTCCACAGCGAACCAAGAT+AGG + chr3_2:76930104-76930123 None:intergenic 50.0%
! GCGAGGAGTGTGTATCTGAA+TGG - chr3_2:76930132-76930151 Msa0426510:intron 50.0%
GGTTGGACGCCTTCAGTATA+AGG - chr3_2:76930260-76930279 Msa0426510:intron 50.0%
ACTACCAATGTCCTGCACAC+CGG + chr3_2:76930902-76930921 None:intergenic 50.0%
TGGTAGTACCTGCTCATCTG+CGG - chr3_2:76930915-76930934 Msa0426510:five_prime_UTR 50.0%
TGATTCCTCGCACGTGGCAA+CGG - chr3_2:76925227-76925246 Msa0426510:intron 55.0%
GCTGCTTCTCAACAAGAGGC+TGG - chr3_2:76925259-76925278 Msa0426510:intron 55.0%
! AGAGGCTCACCGTGCTATTG+CGG - chr3_2:76925339-76925358 Msa0426510:intron 55.0%
GCGTTTGTGTAAGCTCGCAC+AGG - chr3_2:76925759-76925778 Msa0426510:intron 55.0%
!! TACTCCCACTTGGGTTGGTC+TGG - chr3_2:76925989-76926008 Msa0426510:CDS 55.0%
ACCACCAGACCAACCCAAGT+GGG + chr3_2:76925996-76926015 None:intergenic 55.0%
TACCACCAGACCAACCCAAG+TGG + chr3_2:76925997-76926016 None:intergenic 55.0%
!! GTGGTATTGGCTTGGGACCT+TGG - chr3_2:76926011-76926030 Msa0426510:CDS 55.0%
! CTTGAGAGGAGCACACTCCA+AGG + chr3_2:76926031-76926050 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG - chr3_2:76926029-76926048 Msa0426510:intron 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG - chr3_2:76926036-76926055 Msa0426510:intron 55.0%
TTGGCGGAAACATGGCCAGA+GGG + chr3_2:76926856-76926875 None:intergenic 55.0%
TTTGGCGGAAACATGGCCAG+AGG + chr3_2:76926857-76926876 None:intergenic 55.0%
CCAAGTAAGCCAACCCGCAT+TGG + chr3_2:76927195-76927214 None:intergenic 55.0%
!! CCAATGCGGGTTGGCTTACT+TGG - chr3_2:76927192-76927211 Msa0426510:intron 55.0%
TACACCAGGACACTGGGGAT+GGG + chr3_2:76927713-76927732 None:intergenic 55.0%
ATACACCAGGACACTGGGGA+TGG + chr3_2:76927714-76927733 None:intergenic 55.0%
AATGGTGCGGCAAGTGGCAA+TGG - chr3_2:76927861-76927880 Msa0426510:intron 55.0%
GACGCCATAACTTCCGTCGA+CGG - chr3_2:76927923-76927942 Msa0426510:CDS 55.0%
ACGCCATAACTTCCGTCGAC+GGG - chr3_2:76927924-76927943 Msa0426510:CDS 55.0%
CTGTGGACACATGTTCTGCG+AGG - chr3_2:76930115-76930134 Msa0426510:intron 55.0%
AATGTACTTGCCCGGTGTGC+AGG - chr3_2:76930888-76930907 Msa0426510:five_prime_UTR 55.0%
CTACCAATGTCCTGCACACC+GGG + chr3_2:76930901-76930920 None:intergenic 55.0%
! CATCTGCGGACCTTTGGAGA+TGG - chr3_2:76930929-76930948 Msa0426510:five_prime_UTR 55.0%
CTCTGTCCGCCGCAATAGCA+CGG + chr3_2:76925351-76925370 None:intergenic 60.0%
!! TCCCACTTGGGTTGGTCTGG+TGG - chr3_2:76925992-76926011 Msa0426510:CDS 60.0%
TCTTCCCATCCCCAGTGTCC+TGG - chr3_2:76927706-76927725 Msa0426510:intron 60.0%
GATGGTGTGGGGACTGGGAA+GGG - chr3_2:76928842-76928861 Msa0426510:intron 60.0%
GACACCTAGGACTGGGCATC+TGG - chr3_2:76929404-76929423 Msa0426510:intron 60.0%
TTGCCCGGTGTGCAGGACAT+TGG - chr3_2:76930895-76930914 Msa0426510:five_prime_UTR 60.0%
CCAAAGGTCCGCAGATGAGC+AGG + chr3_2:76930926-76930945 None:intergenic 60.0%
CCTGCTCATCTGCGGACCTT+TGG - chr3_2:76930923-76930942 Msa0426510:five_prime_UTR 60.0%
CGAAACCGTTGCCACGTGCG+AGG + chr3_2:76925235-76925254 None:intergenic 65.0%
! GGCTCACCGTGCTATTGCGG+CGG - chr3_2:76925342-76925361 Msa0426510:intron 65.0%
GGATGGTGTGGGGACTGGGA+AGG - chr3_2:76928841-76928860 Msa0426510:intron 65.0%
CGCACCAGATGCCCAGTCCT+AGG + chr3_2:76929411-76929430 None:intergenic 65.0%
AGGACTGGGCATCTGGTGCG+TGG - chr3_2:76929411-76929430 Msa0426510:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 76924789 76931307 76924789 ID=Msa0426510;Name=Msa0426510
chr3_2 mRNA 76924789 76931307 76924789 ID=Msa0426510-mRNA-1;Parent=Msa0426510;Name=Msa0426510-mRNA-1;_AED=0.22;_eAED=0.22;_QI=437|1|1|1|1|1|8|325|362
chr3_2 exon 76924789 76925219 76924789 ID=Msa0426510-mRNA-1:exon:20016;Parent=Msa0426510-mRNA-1
chr3_2 exon 76925943 76926046 76925943 ID=Msa0426510-mRNA-1:exon:20015;Parent=Msa0426510-mRNA-1
chr3_2 exon 76927707 76927784 76927707 ID=Msa0426510-mRNA-1:exon:20014;Parent=Msa0426510-mRNA-1
chr3_2 exon 76927890 76928054 76927890 ID=Msa0426510-mRNA-1:exon:20013;Parent=Msa0426510-mRNA-1
chr3_2 exon 76928151 76928239 76928151 ID=Msa0426510-mRNA-1:exon:20012;Parent=Msa0426510-mRNA-1
chr3_2 exon 76929173 76929341 76929173 ID=Msa0426510-mRNA-1:exon:20011;Parent=Msa0426510-mRNA-1
chr3_2 exon 76929482 76929558 76929482 ID=Msa0426510-mRNA-1:exon:20010;Parent=Msa0426510-mRNA-1
chr3_2 exon 76930570 76931307 76930570 ID=Msa0426510-mRNA-1:exon:20009;Parent=Msa0426510-mRNA-1
chr3_2 five_prime_UTR 76930871 76931307 76930871 ID=Msa0426510-mRNA-1:five_prime_utr;Parent=Msa0426510-mRNA-1
chr3_2 CDS 76930570 76930870 76930570 ID=Msa0426510-mRNA-1:cds;Parent=Msa0426510-mRNA-1
chr3_2 CDS 76929482 76929558 76929482 ID=Msa0426510-mRNA-1:cds;Parent=Msa0426510-mRNA-1
chr3_2 CDS 76929173 76929341 76929173 ID=Msa0426510-mRNA-1:cds;Parent=Msa0426510-mRNA-1
chr3_2 CDS 76928151 76928239 76928151 ID=Msa0426510-mRNA-1:cds;Parent=Msa0426510-mRNA-1
chr3_2 CDS 76927890 76928054 76927890 ID=Msa0426510-mRNA-1:cds;Parent=Msa0426510-mRNA-1
chr3_2 CDS 76927707 76927784 76927707 ID=Msa0426510-mRNA-1:cds;Parent=Msa0426510-mRNA-1
chr3_2 CDS 76925943 76926046 76925943 ID=Msa0426510-mRNA-1:cds;Parent=Msa0426510-mRNA-1
chr3_2 CDS 76925114 76925219 76925114 ID=Msa0426510-mRNA-1:cds;Parent=Msa0426510-mRNA-1
chr3_2 three_prime_UTR 76924789 76925113 76924789 ID=Msa0426510-mRNA-1:three_prime_utr;Parent=Msa0426510-mRNA-1
Gene Sequence

>Msa0426510

ATGATTCCTCGCACGTGGCAACGGTTTCGAGCTGCTGCTTCTCAACAAGAGGCTGGTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCATCATCACGGAATGTGATGTTCTCTGAAGAGGCTCACCGTGCTATTGCGGCGGACAGAGTTCCGTTAGTCCCTTTAACTGATGTTGTCGGTGGAGTTAACGACAGCTTCTCCACTTTTTCCTGGTTTGATTTTCAGCAGATTGCTAAGATGGTTGATCAAATTCTTCCTTTTTCGCTCTTGTTGTTGATTGTTTTGATACGCCGTCACATGGAATATTTCTTTGTCACAATTGGTGTATCAGCTGTAATGTTCAGGTCAAATGAGATTGTCAAGAAACATACTGCGCTGAAGGGAGATCAGAAAGTCTCCGCTCTTCTTGCTCTCTCTTTTATGTTCATGCTGTACGTGCTATGCATTTACGAGTGTTATGGAAGTGATGATGTTTTATTCCCTCTGGCCATGTTTCCGCCAAAAGCAACACCATCTTTTGGGAACGCAATATTCATCATTTTGGTTAATGATACAATGGTGCGGCAAGTGGCAATGGCTTTCAAGTGTTTGTTGCTGATTTACTGCAAAAATGGCAGACGCCATAACTTCCGTCGACGGGGTCAAATCTTAACTCTGGTTGAGTATACACTGCTGCTATATCGTGCTTTCTTGCCAGCACCAGTTTGGTACCGATTTTTCTTTTACATGGACTTTGGAAGTCTCTTCTCATCAATTATCACAGGATTGTATTTAACATTCAAGTTAACATCTGCAGTTGAGAAGGTGACATGCTTACTTTTTGCCTTAAAAGCATTATCAGAAGACGAAATTCTTTATGGTGTTTATGCTACATCAGAACAGGTACGTGCTGCTGGTGATATGTGCGCTATATGCCAAGAGAAGATGCATGTTCCTATCTTGGTTCGCTGTGGACACATGTTCTGCGAGGAGTGTGTATCTGAATGGTTTGAGAGAGAATGTACTTGCCCGGTGTGCAGGACATTGGTAGTACCTGCTCATCTGCGGACCTTTGGAGATGGATCAACAAGTTTGTTTTATCAGTTCTGTTGA

Protein sequence

>Msa0426510

MIPRTWQRFRAAASQQEAGSSSSSSSSSSSSRNVMFSEEAHRAIAADRVPLVPLTDVVGGVNDSFSTFSWFDFQQIAKMVDQILPFSLLLLIVLIRRHMEYFFVTIGVSAVMFRSNEIVKKHTALKGDQKVSALLALSFMFMLYVLCIYECYGSDDVLFPLAMFPPKATPSFGNAIFIILVNDTMVRQVAMAFKCLLLIYCKNGRRHNFRRRGQILTLVEYTLLLYRAFLPAPVWYRFFFYMDFGSLFSSIITGLYLTFKLTSAVEKVTCLLFALKALSEDEILYGVYATSEQVRAAGDMCAICQEKMHVPILVRCGHMFCEECVSEWFERECTCPVCRTLVVPAHLRTFGDGSTSLFYQFC*