Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1393750 | XP_013461478.2 | 82.873 | 362 | 33 | 3 | 1 | 342 | 1 | 353 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1393750 | sp|Q96EX2|RNFT2_HUMAN | 28.000 | 325 | 208 | 9 | 32 | 340 | 128 | 442 | 2.48e-28 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1393750 | A0A396IZB5 | 82.873 | 362 | 33 | 3 | 1 | 342 | 1 | 353 | 0.0 | 578 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0426510 | Msa1393750 | 0.823719 | 1.190596e-53 | -8.615850e-47 |
| Msa0472980 | Msa1393750 | 0.947025 | 1.497654e-105 | -8.615850e-47 |
| Msa0517220 | Msa1393750 | 0.975306 | 1.035366e-139 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1393750 | MtrunA17_Chr3g0128531 | 82.873 | 362 | 33 | 3 | 1 | 342 | 1 | 353 | 0.0 | 578 |
| Msa1393750 | MtrunA17_Chr5g0428621 | 69.580 | 286 | 81 | 2 | 61 | 341 | 196 | 480 | 4.78e-144 | 416 |
| Msa1393750 | MtrunA17_Chr7g0245321 | 62.807 | 285 | 101 | 1 | 62 | 341 | 141 | 425 | 4.48e-123 | 360 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1393750 | AT5G01960.1 | 63.732 | 284 | 98 | 1 | 62 | 340 | 141 | 424 | 8.00e-135 | 390 |
Find 67 sgRNAs with CRISPR-Local
Find 392 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGAAGACGAAATTCTTTA+TGG | 0.134162 | tig0021758:-49768 | Msa1393750:CDS |
| TTCTATGAATTTGAGATTAA+AGG | 0.185855 | tig0021758:-47081 | Msa1393750:three_prime_UTR |
| GAACGCAATATTCATCATTT+TGG | 0.200530 | tig0021758:-51221 | Msa1393750:CDS |
| CCAAAAGATGGTGTTGCTTT+TGG | 0.234388 | tig0021758:+51244 | None:intergenic |
| GTCCAAATGTTTAGTAATAA+TGG | 0.237018 | tig0021758:-47109 | Msa1393750:three_prime_UTR |
| ATCAACAACAAGAGCGAAAA+AGG | 0.256421 | tig0021758:+52629 | None:intergenic |
| AACAATTGTGATAAACATTA+AGG | 0.268620 | tig0021758:-46841 | None:intergenic |
| ATCCATTATTACTAAACATT+TGG | 0.291163 | tig0021758:+47107 | None:intergenic |
| CCACCGACAACATCAGTTAA+AGG | 0.319245 | tig0021758:+52725 | None:intergenic |
| CCAAAAGCAACACCATCTTT+TGG | 0.327744 | tig0021758:-51244 | Msa1393750:CDS |
| GTTTATCACAATTGTTATCA+TGG | 0.359540 | tig0021758:+46848 | None:intergenic |
| GCAGATTTCTTTGTCACAAT+TGG | 0.363731 | tig0021758:-51582 | Msa1393750:intron |
| CTATGCATTTACGAGTGTTA+TGG | 0.387657 | tig0021758:-51304 | Msa1393750:CDS |
| CCTGCTCATCTGCGGACCTT+TGG | 0.398301 | tig0021758:-47203 | Msa1393750:CDS |
| GTGTATCAGCTGTAATGTTC+AGG | 0.404247 | tig0021758:-51560 | Msa1393750:CDS |
| TAACCTGTCGACGGAAGTTA+TGG | 0.418408 | tig0021758:+50186 | None:intergenic |
| GTCCCTTTAACTGATGTTGT+CGG | 0.452080 | tig0021758:-52728 | Msa1393750:CDS |
| CTTTCTTGCCAGCACCAGTT+TGG | 0.452560 | tig0021758:-50025 | Msa1393750:CDS |
| AATGTACTTGCCCGGTGTGC+AGG | 0.460660 | tig0021758:-47238 | Msa1393750:CDS |
| CTACCAATGTCCTGCACACC+GGG | 0.467233 | tig0021758:+47228 | None:intergenic |
| CACCGACAACATCAGTTAAA+GGG | 0.474359 | tig0021758:+52726 | None:intergenic |
| CCAAAGGTCCGCAGATGAGC+AGG | 0.477758 | tig0021758:+47203 | None:intergenic |
| CTCTTCTCATCAATTATCAC+AGG | 0.485206 | tig0021758:-49969 | Msa1393750:CDS |
| AATCGGTACCAAACTGGTGC+TGG | 0.486207 | tig0021758:+50017 | None:intergenic |
| CAAGGGTCAAATCTTAACTC+TGG | 0.491542 | tig0021758:-50075 | Msa1393750:intron |
| GAAGATGCATGTTCCTATCC+TGG | 0.496904 | tig0021758:-48062 | Msa1393750:CDS |
| TAGGAACATGCATCTTCTCT+TGG | 0.500016 | tig0021758:+48068 | None:intergenic |
| CTTCTTCTTCTTCATCATCA+CGG | 0.500594 | tig0021758:-52808 | Msa1393750:CDS |
| ACGCCATAACTTCCGTCGAC+AGG | 0.500970 | tig0021758:-50189 | Msa1393750:intron |
| TGTTTATGCTACATCAGAAC+AGG | 0.501816 | tig0021758:-49745 | Msa1393750:intron |
| TAAATGCAGGTACGTGCTGC+TGG | 0.508684 | tig0021758:-48109 | Msa1393750:intron |
| AATATTGCGTTCCCAAAAGA+TGG | 0.512320 | tig0021758:+51232 | None:intergenic |
| TGTCCACAGCGAACCAGGAT+AGG | 0.526498 | tig0021758:+48049 | None:intergenic |
| TGAGAGAGAATGTACTTGCC+CGG | 0.526955 | tig0021758:-47246 | Msa1393750:CDS |
| CATCTGCGGACCTTTGGAGA+TGG | 0.534634 | tig0021758:-47197 | Msa1393750:CDS |
| CTCTGTCCGCCGCAATAGCA+CGG | 0.540543 | tig0021758:+52759 | None:intergenic |
| AAATGTTTAGTAATAATGGA+TGG | 0.543167 | tig0021758:-47105 | Msa1393750:three_prime_UTR |
| ACATGTGTCCACAGCGAACC+AGG | 0.543274 | tig0021758:+48044 | None:intergenic |
| GCTGCTTCTCAACAAGAGGC+TGG | 0.544863 | tig0021758:-52848 | Msa1393750:CDS |
| ATTATTACTAAACATTTGGA+CGG | 0.545707 | tig0021758:+47111 | None:intergenic |
| AATGGTGCGGCAAGTGGCAA+TGG | 0.548641 | tig0021758:-50252 | Msa1393750:CDS |
| TGATTCCTCGCACGTGGCAA+CGG | 0.549343 | tig0021758:-52880 | Msa1393750:CDS |
| AGCTGCTGCTTCTCAACAAG+AGG | 0.550089 | tig0021758:-52852 | Msa1393750:CDS |
| CAAGAAACATACTGCGCTGA+AGG | 0.554124 | tig0021758:-51523 | Msa1393750:intron |
| TTGCCCGGTGTGCAGGACAT+TGG | 0.557576 | tig0021758:-47231 | Msa1393750:CDS |
| TCATTGTCTTTCAGATACAA+TGG | 0.559127 | tig0021758:-50270 | Msa1393750:intron |
| GTTAACATCTGCAGTTGAGA+AGG | 0.561594 | tig0021758:-49928 | Msa1393750:intron |
| AGATACAATGGTGCGGCAAG+TGG | 0.567277 | tig0021758:-50258 | Msa1393750:CDS |
| CCTTTAACTGATGTTGTCGG+TGG | 0.583319 | tig0021758:-52725 | Msa1393750:CDS |
| GAATGTGATGTTCTCTGAAG+AGG | 0.584677 | tig0021758:-52786 | Msa1393750:CDS |
| CATTAATCATTATCATCATG+AGG | 0.600969 | tig0021758:+46911 | None:intergenic |
| ACATCAGTTAAAGGGACTAA+CGG | 0.601383 | tig0021758:+52734 | None:intergenic |
| AGAGGCTCACCGTGCTATTG+CGG | 0.605547 | tig0021758:-52768 | Msa1393750:CDS |
| AAAAGAGAGAGCAAGAAGAG+CGG | 0.612995 | tig0021758:+51345 | None:intergenic |
| GGCTCACCGTGCTATTGCGG+CGG | 0.614817 | tig0021758:-52765 | Msa1393750:CDS |
| CGAAACCGTTGCCACGTGCG+AGG | 0.614851 | tig0021758:+52875 | None:intergenic |
| ACTACCAATGTCCTGCACAC+CGG | 0.615463 | tig0021758:+47227 | None:intergenic |
| AACTACTCCTAACCTGTCGA+CGG | 0.623342 | tig0021758:+50177 | None:intergenic |
| AAATCATACATTCCATGTGA+CGG | 0.624468 | tig0021758:+52594 | None:intergenic |
| GTTCCTATCCTGGTTCGCTG+TGG | 0.632151 | tig0021758:-48052 | Msa1393750:CDS |
| TGATCATGATTCCTCGCACG+TGG | 0.632911 | tig0021758:-52886 | None:intergenic |
| TTGGCGGAAACATGGCCAGA+GGG | 0.641387 | tig0021758:+51263 | None:intergenic |
| GTCTTTCAGATACAATGGTG+CGG | 0.642317 | tig0021758:-50265 | Msa1393750:intron |
| ACTTGTTGATCCATCTCCAA+AGG | 0.643362 | tig0021758:+47187 | None:intergenic |
| TGGTAGTACCTGCTCATCTG+CGG | 0.645210 | tig0021758:-47211 | Msa1393750:CDS |
| TTTGGCGGAAACATGGCCAG+AGG | 0.658754 | tig0021758:+51262 | None:intergenic |
| CTGTGGACACATGTTCTGCG+AGG | 0.696401 | tig0021758:-48035 | Msa1393750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTGTAATAAGTTTATT+TGG | + | tig0021758:49038-49057 | None:intergenic | 10.0% |
| !!! | TATCATATTCTTTTTTTTTA+AGG | + | tig0021758:50480-50499 | None:intergenic | 10.0% |
| !! | ATATACTAATATTTGTATAA+TGG | - | tig0021758:51543-51562 | Msa1393750:CDS | 10.0% |
| !! | TTATTCTATAATATAAAAGA+AGG | + | tig0021758:52394-52413 | None:intergenic | 10.0% |
| !! | TAGTATAATCTTTAATCATA+TGG | - | tig0021758:47232-47251 | Msa1393750:CDS | 15.0% |
| !!! | TTTTATGTTCAAAACAAAAA+TGG | + | tig0021758:47986-48005 | None:intergenic | 15.0% |
| !! | TTTCAAAATGAAAATTCTAA+AGG | + | tig0021758:48250-48269 | None:intergenic | 15.0% |
| !! | TAAACAAAGTTATTCAAATT+TGG | + | tig0021758:48757-48776 | None:intergenic | 15.0% |
| !!! | AAATTTGAATAACTTTGTTT+AGG | - | tig0021758:48756-48775 | Msa1393750:intron | 15.0% |
| !!! | AATTTGAATAACTTTGTTTA+GGG | - | tig0021758:48757-48776 | Msa1393750:intron | 15.0% |
| !!! | AAATGTTTTAAATTGTTTCA+AGG | - | tig0021758:49630-49649 | Msa1393750:intron | 15.0% |
| !!! | AATGTTTTAAATTGTTTCAA+GGG | - | tig0021758:49631-49650 | Msa1393750:intron | 15.0% |
| !!! | AAAGAAAATGGAATAATTTT+GGG | + | tig0021758:49881-49900 | None:intergenic | 15.0% |
| !!! | TAAAGAAAATGGAATAATTT+TGG | + | tig0021758:49882-49901 | None:intergenic | 15.0% |
| !! | CTATAAAAGTTATTGAAAAT+TGG | - | tig0021758:50131-50150 | Msa1393750:intron | 15.0% |
| !! | AAAGGAATTATATACTTAAA+TGG | - | tig0021758:50226-50245 | Msa1393750:CDS | 15.0% |
| !! | TCTAAAAATGTGTTTATAAA+TGG | + | tig0021758:51169-51188 | None:intergenic | 15.0% |
| !!! | ATTTAAGACAAATAAACTAT+AGG | - | tig0021758:51783-51802 | Msa1393750:intron | 15.0% |
| !!! | TTGTTTTTATTACCTTATCA+AGG | + | tig0021758:47830-47849 | None:intergenic | 20.0% |
| !! | ATAAGGTAATAAAAACAACA+TGG | - | tig0021758:47832-47851 | Msa1393750:intron | 20.0% |
| !! | ATATCATACAGTTAAATTGA+TGG | + | tig0021758:48105-48124 | None:intergenic | 20.0% |
| !!! | ATATTCATCATTTTGGTTAA+TGG | - | tig0021758:48509-48528 | Msa1393750:intron | 20.0% |
| !! | TTAAAGACTAAAGTATATCA+AGG | - | tig0021758:48677-48696 | Msa1393750:intron | 20.0% |
| !! | TGATATTATCACATAAATTG+TGG | - | tig0021758:48900-48919 | Msa1393750:intron | 20.0% |
| !! | AAATTGTGGAATATATCAAT+TGG | - | tig0021758:48914-48933 | Msa1393750:intron | 20.0% |
| !!! | ATGTTTCTTTTAGAATTTTC+AGG | - | tig0021758:48968-48987 | Msa1393750:intron | 20.0% |
| !!! | TGTTTCTTTTAGAATTTTCA+GGG | - | tig0021758:48969-48988 | Msa1393750:intron | 20.0% |
| !!! | CAATTATTCTAATTCTTTTG+TGG | - | tig0021758:49391-49410 | Msa1393750:intron | 20.0% |
| !!! | AAGCTTTCATTCTTTAAAAT+TGG | - | tig0021758:49819-49838 | Msa1393750:intron | 20.0% |
| !! | AAAAATGATCTGATTAAATC+TGG | - | tig0021758:50012-50031 | Msa1393750:CDS | 20.0% |
| !!! | AATTTTAGAGGTTTAAGATA+AGG | - | tig0021758:50161-50180 | Msa1393750:intron | 20.0% |
| !!! | ATTTTAGAGGTTTAAGATAA+GGG | - | tig0021758:50162-50181 | Msa1393750:intron | 20.0% |
| !! | TCATTTATGCAATCAAATAA+AGG | - | tig0021758:50208-50227 | Msa1393750:CDS | 20.0% |
| !!! | ATAATAGAACAGCATTTTTA+TGG | - | tig0021758:50430-50449 | Msa1393750:intron | 20.0% |
| !!! | GTTTTTGTATACTTTTTTTG+TGG | - | tig0021758:50578-50597 | Msa1393750:intron | 20.0% |
| !! | TAATCTACATATACAAACAA+GGG | + | tig0021758:50727-50746 | None:intergenic | 20.0% |
| !! | TTAATCTACATATACAAACA+AGG | + | tig0021758:50728-50747 | None:intergenic | 20.0% |
| !! | CATTTAATTGTGTCAAATTA+AGG | - | tig0021758:50868-50887 | Msa1393750:intron | 20.0% |
| !! | AAAATGTGTTTATAAATGGT+GGG | + | tig0021758:51165-51184 | None:intergenic | 20.0% |
| !! | AAAAATGTGTTTATAAATGG+TGG | + | tig0021758:51166-51185 | None:intergenic | 20.0% |
| !! | AGAAGTAACAGATAATTATT+TGG | - | tig0021758:51811-51830 | Msa1393750:intron | 20.0% |
| !! | GAAGTAACAGATAATTATTT+GGG | - | tig0021758:51812-51831 | Msa1393750:intron | 20.0% |
| !! | GTAAACCTAAAATAATTATG+TGG | + | tig0021758:51901-51920 | None:intergenic | 20.0% |
| !! | ATAAATTCAGAAGATGAAAA+TGG | - | tig0021758:51978-51997 | Msa1393750:intron | 20.0% |
| !!! | AAAAGCATACATAAAGAAAT+CGG | + | tig0021758:52109-52128 | None:intergenic | 20.0% |
| !!! | ATTTCTTTATGTATGCTTTT+CGG | - | tig0021758:52109-52128 | Msa1393750:intron | 20.0% |
| !! | TAACCAATTTAATACAGATA+GGG | + | tig0021758:52229-52248 | None:intergenic | 20.0% |
| !! | ATAACCAATTTAATACAGAT+AGG | + | tig0021758:52230-52249 | None:intergenic | 20.0% |
| !! | TATCTGTATTAAATTGGTTA+TGG | - | tig0021758:52229-52248 | Msa1393750:intron | 20.0% |
| !! | TAATGTATCAATTATGGAAA+TGG | - | tig0021758:52256-52275 | Msa1393750:intron | 20.0% |
| !! | ATTATTACTAAACATTTGGA+CGG | + | tig0021758:52615-52634 | None:intergenic | 20.0% |
| !! | ATCCATTATTACTAAACATT+TGG | + | tig0021758:52619-52638 | None:intergenic | 20.0% |
| !!! | AAATGTTTAGTAATAATGGA+TGG | - | tig0021758:52618-52637 | Msa1393750:CDS | 20.0% |
| !!! | TTCTATGAATTTGAGATTAA+AGG | - | tig0021758:52642-52661 | Msa1393750:CDS | 20.0% |
| !! | TGAAAAAGAAAGAAAAGAAA+GGG | + | tig0021758:52729-52748 | None:intergenic | 20.0% |
| !! | ATGAAAAAGAAAGAAAAGAA+AGG | + | tig0021758:52730-52749 | None:intergenic | 20.0% |
| ! | TAAGGATCATTACAAAAACA+CGG | + | tig0021758:47556-47575 | None:intergenic | 25.0% |
| !! | TTTTATTACCTTATCAAGGA+GGG | + | tig0021758:47826-47845 | None:intergenic | 25.0% |
| !! | TTTTTATTACCTTATCAAGG+AGG | + | tig0021758:47827-47846 | None:intergenic | 25.0% |
| ! | TATGTTCAAAACAAAAATGG+TGG | + | tig0021758:47983-48002 | None:intergenic | 25.0% |
| ! | AGTTAGTGTGTTATGTTAAT+AGG | - | tig0021758:48020-48039 | Msa1393750:intron | 25.0% |
| ! | GTTAGTGTGTTATGTTAATA+GGG | - | tig0021758:48021-48040 | Msa1393750:intron | 25.0% |
| ! | TTAGTGTGTTATGTTAATAG+GGG | - | tig0021758:48022-48041 | Msa1393750:intron | 25.0% |
| !! | ATACAGTTAAATTGATGGAT+TGG | + | tig0021758:48100-48119 | None:intergenic | 25.0% |
| ! | GATAAAGCAAATAAATTGTC+TGG | + | tig0021758:48585-48604 | None:intergenic | 25.0% |
| ! | GACAATTTATTTGCTTTATC+AGG | - | tig0021758:48585-48604 | Msa1393750:intron | 25.0% |
| !! | AGTCTTTTGTATTTAATCAG+TGG | - | tig0021758:48724-48743 | Msa1393750:intron | 25.0% |
| !! | GTCTTTTGTATTTAATCAGT+GGG | - | tig0021758:48725-48744 | Msa1393750:intron | 25.0% |
| ! | ATCAATTAAAATGAGAAGTG+CGG | + | tig0021758:48884-48903 | None:intergenic | 25.0% |
| !!! | AAGTTTTGATCCAAAATTTG+CGG | - | tig0021758:49069-49088 | Msa1393750:intron | 25.0% |
| ! | GCATGAAAAATACTTCAAAT+TGG | + | tig0021758:49110-49129 | None:intergenic | 25.0% |
| ! | AAACTATACTTGAAAACTAC+AGG | + | tig0021758:49592-49611 | None:intergenic | 25.0% |
| ! | AGTCCATGTAAAAGAAAAAT+CGG | + | tig0021758:49726-49745 | None:intergenic | 25.0% |
| !! | TTTTTCTTTTACATGGACTT+TGG | - | tig0021758:49727-49746 | Msa1393750:intron | 25.0% |
| ! | TCACCTAATAAACATATAGA+CGG | + | tig0021758:49906-49925 | None:intergenic | 25.0% |
| !! | ATTGGATATGCAAATTTTAG+AGG | - | tig0021758:50149-50168 | Msa1393750:intron | 25.0% |
| ! | ATAAATGAAGATTTGAAGGA+GGG | + | tig0021758:50196-50215 | None:intergenic | 25.0% |
| ! | TTGCATAAATGAAGATTTGA+AGG | + | tig0021758:50200-50219 | None:intergenic | 25.0% |
| ! | AGATTAACAAAGTATGTTGT+GGG | + | tig0021758:50271-50290 | None:intergenic | 25.0% |
| ! | TAAATTAATGCAACAGTCTT+CGG | - | tig0021758:50306-50325 | Msa1393750:intron | 25.0% |
| !! | AATTTGTTTAGTTGTATGCT+TGG | - | tig0021758:50395-50414 | Msa1393750:intron | 25.0% |
| ! | AAAGTTTCAAATGCTTATCA+AGG | - | tig0021758:50539-50558 | Msa1393750:intron | 25.0% |
| ! | AAGTTTCAAATGCTTATCAA+GGG | - | tig0021758:50540-50559 | Msa1393750:intron | 25.0% |
| ! | CAAGTAAAAACTATGAAGAT+TGG | + | tig0021758:50633-50652 | None:intergenic | 25.0% |
| !! | TCTTCATAGTTTTTACTTGT+TGG | - | tig0021758:50634-50653 | Msa1393750:intron | 25.0% |
| !!! | TTATAGAGGTTTTAGAAGTA+AGG | - | tig0021758:50815-50834 | Msa1393750:intron | 25.0% |
| ! | AAATGTTAAGAGTTTCACAT+TGG | + | tig0021758:51203-51222 | None:intergenic | 25.0% |
| !!! | AGTGGTTACATTAGTTTTTA+AGG | - | tig0021758:51253-51272 | Msa1393750:CDS | 25.0% |
| !!! | CTTTTATTTTCTTAAGTGCT+TGG | - | tig0021758:51385-51404 | Msa1393750:intron | 25.0% |
| ! | GGATAATGTATACTTTCATA+AGG | - | tig0021758:51406-51425 | Msa1393750:intron | 25.0% |
| ! | GGATTCTTTATATGATTATG+TGG | - | tig0021758:51427-51446 | Msa1393750:intron | 25.0% |
| ! | AGCAGCATTAAATAACAAAA+GGG | + | tig0021758:51516-51535 | None:intergenic | 25.0% |
| ! | TAGCAGCATTAAATAACAAA+AGG | + | tig0021758:51517-51536 | None:intergenic | 25.0% |
| !!! | TTTTTCACTAGTCTTTTTAC+CGG | - | tig0021758:51572-51591 | Msa1393750:CDS | 25.0% |
| ! | TAACAGATAATTATTTGGGT+TGG | - | tig0021758:51816-51835 | Msa1393750:intron | 25.0% |
| ! | TAATCAATTGAGGCAATTTA+GGG | + | tig0021758:51865-51884 | None:intergenic | 25.0% |
| ! | ATAATCAATTGAGGCAATTT+AGG | + | tig0021758:51866-51885 | None:intergenic | 25.0% |
| ! | ACAATTCTGATAATCAATTG+AGG | + | tig0021758:51875-51894 | None:intergenic | 25.0% |
| !! | GTTGTCCACATAATTATTTT+AGG | - | tig0021758:51893-51912 | Msa1393750:intron | 25.0% |
| !!! | ATGCCAAATTTTAAGTGTAA+CGG | + | tig0021758:51928-51947 | None:intergenic | 25.0% |
| ! | AACCAATTTAATACAGATAG+GGG | + | tig0021758:52228-52247 | None:intergenic | 25.0% |
| ! | GGAAGATAATGTATCAATTA+TGG | - | tig0021758:52250-52269 | Msa1393750:intron | 25.0% |
| ! | GTCCAAATGTTTAGTAATAA+TGG | - | tig0021758:52614-52633 | Msa1393750:CDS | 25.0% |
| !!! | TCTTTTTCATTAAAACTGCA+AGG | - | tig0021758:52740-52759 | Msa1393750:CDS | 25.0% |
| ! | CATTAATCATTATCATCATG+AGG | + | tig0021758:52815-52834 | None:intergenic | 25.0% |
| ! | GTTTATCACAATTGTTATCA+TGG | + | tig0021758:52878-52897 | None:intergenic | 25.0% |
| AAAATCAAACCAGGAAAAAG+TGG | + | tig0021758:47041-47060 | None:intergenic | 30.0% | |
| AAATCATACATTCCATGTGA+CGG | + | tig0021758:47132-47151 | None:intergenic | 30.0% | |
| ! | TTCTTTTGTCCTTCAAATGT+TGG | - | tig0021758:47169-47188 | Msa1393750:CDS | 30.0% |
| AGCTTAGAGATTATCAAGTA+AGG | + | tig0021758:47574-47593 | None:intergenic | 30.0% | |
| TTAATTGCGTAGTGATTCTA+TGG | - | tig0021758:47884-47903 | Msa1393750:intron | 30.0% | |
| TTTCCTCTAAGTTTCTACTT+CGG | - | tig0021758:47951-47970 | Msa1393750:intron | 30.0% | |
| TAAAGGACTTGCATAGTTAT+GGG | + | tig0021758:48233-48252 | None:intergenic | 30.0% | |
| ! | TTTTTCGTCATCTTTTTGTG+AGG | + | tig0021758:48307-48326 | None:intergenic | 30.0% |
| GATGACGAAAAAAATTAGAG+AGG | - | tig0021758:48315-48334 | Msa1393750:intron | 30.0% | |
| ! | AATTCGATTTCTGTTTTGCA+GGG | - | tig0021758:48341-48360 | Msa1393750:intron | 30.0% |
| ! | GAACGCAATATTCATCATTT+TGG | - | tig0021758:48502-48521 | Msa1393750:intron | 30.0% |
| !!! | CATCATTTTGGTTAATGGTA+TGG | - | tig0021758:48514-48533 | Msa1393750:intron | 30.0% |
| ACTAAAGTATATCAAGGATG+TGG | - | tig0021758:48683-48702 | Msa1393750:intron | 30.0% | |
| GTTAGATAACCAACCAATAA+TGG | + | tig0021758:48862-48881 | None:intergenic | 30.0% | |
| !! | AGTTTTGATCCAAAATTTGC+GGG | - | tig0021758:49070-49089 | Msa1393750:intron | 30.0% |
| TAAATGCAAACAGGCAAATT+TGG | + | tig0021758:49164-49183 | None:intergenic | 30.0% | |
| AAAACTGCTTAAATGCAAAC+AGG | + | tig0021758:49173-49192 | None:intergenic | 30.0% | |
| ACACACAAAAATAATACACC+AGG | + | tig0021758:49337-49356 | None:intergenic | 30.0% | |
| TCATTGTCTTTCAGATACAA+TGG | - | tig0021758:49453-49472 | Msa1393750:intron | 30.0% | |
| !! | TTGCTGATTTACTGCAAAAA+TGG | - | tig0021758:49508-49527 | Msa1393750:intron | 30.0% |
| !!! | GTACCGATTTTTCTTTTACA+TGG | - | tig0021758:49720-49739 | Msa1393750:intron | 30.0% |
| ATATAGACGGGTAAAGAAAA+TGG | + | tig0021758:49893-49912 | None:intergenic | 30.0% | |
| TACCCGTCTATATGTTTATT+AGG | - | tig0021758:49900-49919 | Msa1393750:intron | 30.0% | |
| CACCTAATAAACATATAGAC+GGG | + | tig0021758:49905-49924 | None:intergenic | 30.0% | |
| !! | GTCTTCTGATAATGCTTTTA+AGG | + | tig0021758:49944-49963 | None:intergenic | 30.0% |
| TCAGAAGACGAAATTCTTTA+TGG | - | tig0021758:49955-49974 | Msa1393750:CDS | 30.0% | |
| CATAAATGAAGATTTGAAGG+AGG | + | tig0021758:50197-50216 | None:intergenic | 30.0% | |
| CAGATTAACAAAGTATGTTG+TGG | + | tig0021758:50272-50291 | None:intergenic | 30.0% | |
| TCGGTTATAGTAAAAAGATG+TGG | - | tig0021758:50325-50344 | Msa1393750:intron | 30.0% | |
| ! | TAGAACAGCATTTTTATGGA+TGG | - | tig0021758:50434-50453 | Msa1393750:intron | 30.0% |
| AAGCTTTCAGAAAAAAGATG+AGG | + | tig0021758:50516-50535 | None:intergenic | 30.0% | |
| !! | TTTTGTGGATGCTACTTATT+TGG | - | tig0021758:50593-50612 | Msa1393750:intron | 30.0% |
| GACACAATTAAATGCAAACA+AGG | + | tig0021758:50862-50881 | None:intergenic | 30.0% | |
| TGCAAATGTTTATAAGTGGT+GGG | + | tig0021758:50949-50968 | None:intergenic | 30.0% | |
| !! | CAAGTCGATTTTGTAAGAAT+GGG | + | tig0021758:51128-51147 | None:intergenic | 30.0% |
| !! | ACAAGTCGATTTTGTAAGAA+TGG | + | tig0021758:51129-51148 | None:intergenic | 30.0% |
| GTATTAGTGTTTGTAAACAG+TGG | - | tig0021758:51235-51254 | Msa1393750:CDS | 30.0% | |
| !! | TTGCTTTTACATTGCTTTGT+TGG | - | tig0021758:51351-51370 | Msa1393750:CDS | 30.0% |
| AGCATTAAATAACAAAAGGG+AGG | + | tig0021758:51513-51532 | None:intergenic | 30.0% | |
| ! | TAAGTTGAGTATCTAAATGC+AGG | - | tig0021758:51601-51620 | Msa1393750:intron | 30.0% |
| AATCAATTGAGGCAATTTAG+GGG | + | tig0021758:51864-51883 | None:intergenic | 30.0% | |
| TCTCCGTTACACTTAAAATT+TGG | - | tig0021758:51922-51941 | Msa1393750:intron | 30.0% | |
| ! | ATATTTGCTAGATATTGCAG+TGG | - | tig0021758:51948-51967 | Msa1393750:intron | 30.0% |
| CAAGTCTAATAAATAGTCTG+AGG | + | tig0021758:52065-52084 | None:intergenic | 30.0% | |
| ! | AAGTGTTGCATTGTTAAATG+TGG | - | tig0021758:52147-52166 | Msa1393750:intron | 30.0% |
| AAATGTGGCTAATAATTGTG+TGG | - | tig0021758:52162-52181 | Msa1393750:intron | 30.0% | |
| ACCAATTTAATACAGATAGG+GGG | + | tig0021758:52227-52246 | None:intergenic | 30.0% | |
| !! | AAATCACATTTCTGGTCATT+AGG | + | tig0021758:52324-52343 | None:intergenic | 30.0% |
| !!! | TAGACTCAGTTTTGAAGTTT+GGG | + | tig0021758:52348-52367 | None:intergenic | 30.0% |
| !!! | ATAGACTCAGTTTTGAAGTT+TGG | + | tig0021758:52349-52368 | None:intergenic | 30.0% |
| AAACTTCAAAACTGAGTCTA+TGG | - | tig0021758:52348-52367 | Msa1393750:intron | 30.0% | |
| !! | ATTTACCAATTTGTTTTCCC+AGG | - | tig0021758:52452-52471 | Msa1393750:intron | 30.0% |
| ! | TTTTCATTAAAACTGCAAGG+AGG | - | tig0021758:52743-52762 | Msa1393750:CDS | 30.0% |
| AGAAGAAGAAGAAGAAGAAG+AGG | + | tig0021758:46906-46925 | None:intergenic | 35.0% | |
| CTTCTTCTTCTTCATCATCA+CGG | - | tig0021758:46915-46934 | Msa1393750:three_prime_UTR | 35.0% | |
| ACATCAGTTAAAGGGACTAA+CGG | + | tig0021758:46992-47011 | None:intergenic | 35.0% | |
| AATCTGCTGAAAATCAAACC+AGG | + | tig0021758:47050-47069 | None:intergenic | 35.0% | |
| ! | TTTTCAGCAGATTGCTAAGA+TGG | - | tig0021758:47057-47076 | Msa1393750:three_prime_UTR | 35.0% |
| ATCAACAACAAGAGCGAAAA+AGG | + | tig0021758:47097-47116 | None:intergenic | 35.0% | |
| TTGTCCTTCAAATGTTGGAT+TGG | - | tig0021758:47174-47193 | Msa1393750:CDS | 35.0% | |
| CAATCCAATCCAACATTTGA+AGG | + | tig0021758:47181-47200 | None:intergenic | 35.0% | |
| ! | TCAAATGTTGGATTGGATTG+TGG | - | tig0021758:47181-47200 | Msa1393750:CDS | 35.0% |
| TGTGAGCAACAAAATGAAGT+TGG | + | tig0021758:47263-47282 | None:intergenic | 35.0% | |
| !! | CACCGTTACTTTGAGATATT+GGG | - | tig0021758:47286-47305 | Msa1393750:intron | 35.0% |
| TGCCCAATATCTCAAAGTAA+CGG | + | tig0021758:47291-47310 | None:intergenic | 35.0% | |
| ! | TTTGAGATATTGGGCATGTT+TGG | - | tig0021758:47295-47314 | Msa1393750:intron | 35.0% |
| TCAAATAAGCCAATCCAAAC+AGG | - | tig0021758:47513-47532 | Msa1393750:intron | 35.0% | |
| GTAGTGATTCTATGGTCTAA+GGG | - | tig0021758:47892-47911 | Msa1393750:intron | 35.0% | |
| ATAGGGTTTGAGTGATAAAG+AGG | + | tig0021758:48062-48081 | None:intergenic | 35.0% | |
| ! | GGATTCGAAGGTATAACATA+GGG | + | tig0021758:48079-48098 | None:intergenic | 35.0% |
| ! | TGGATTCGAAGGTATAACAT+AGG | + | tig0021758:48080-48099 | None:intergenic | 35.0% |
| !! | AATTGATGGATTGGATTCGA+AGG | + | tig0021758:48091-48110 | None:intergenic | 35.0% |
| GCAGATTTCTTTGTCACAAT+TGG | - | tig0021758:48141-48160 | Msa1393750:intron | 35.0% | |
| CTAAAGGACTTGCATAGTTA+TGG | + | tig0021758:48234-48253 | None:intergenic | 35.0% | |
| ! | CAATTCGATTTCTGTTTTGC+AGG | - | tig0021758:48340-48359 | Msa1393750:intron | 35.0% |
| CTATGCATTTACGAGTGTTA+TGG | - | tig0021758:48419-48438 | Msa1393750:intron | 35.0% | |
| !! | TGATGATGTTTTATTCCCTC+TGG | - | tig0021758:48445-48464 | Msa1393750:intron | 35.0% |
| ! | CAAAAGCAACACCATCTTTT+GGG | - | tig0021758:48480-48499 | Msa1393750:intron | 35.0% |
| AATATTGCGTTCCCAAAAGA+TGG | + | tig0021758:48494-48513 | None:intergenic | 35.0% | |
| AAGTATATCAAGGATGTGGA+AGG | - | tig0021758:48687-48706 | Msa1393750:intron | 35.0% | |
| TTAACAGTTCTTTGCCAATG+CGG | - | tig0021758:48785-48804 | Msa1393750:intron | 35.0% | |
| AAATAATACACCAGGACACT+GGG | + | tig0021758:49329-49348 | None:intergenic | 35.0% | |
| AAAATAATACACCAGGACAC+TGG | + | tig0021758:49330-49349 | None:intergenic | 35.0% | |
| GTGTTGTCTATTCTCGATAT+TGG | - | tig0021758:49353-49372 | Msa1393750:intron | 35.0% | |
| ! | TCTCGATATTGGTGTTTCTA+TGG | - | tig0021758:49364-49383 | Msa1393750:intron | 35.0% |
| TTGTGGTGAGAAACAATTAC+TGG | - | tig0021758:49408-49427 | Msa1393750:intron | 35.0% | |
| ! | CAATTACTGGTTAGTATCCA+TGG | - | tig0021758:49421-49440 | Msa1393750:intron | 35.0% |
| GACAATGAATATTGTGACCA+TGG | + | tig0021758:49441-49460 | None:intergenic | 35.0% | |
| AAGAAAAATCGGTACCAAAC+TGG | + | tig0021758:49715-49734 | None:intergenic | 35.0% | |
| CTCTTCTCATCAATTATCAC+AGG | - | tig0021758:49754-49773 | Msa1393750:CDS | 35.0% | |
| TGTTTATGCTACATCAGAAC+AGG | - | tig0021758:49978-49997 | Msa1393750:CDS | 35.0% | |
| CATGATGACACAATGCATTA+TGG | + | tig0021758:50369-50388 | None:intergenic | 35.0% | |
| ! | AGCATTTTTATGGATGGTGT+GGG | - | tig0021758:50440-50459 | Msa1393750:intron | 35.0% |
| ! | GGATGCTACTTATTTGGTTA+CGG | - | tig0021758:50599-50618 | Msa1393750:intron | 35.0% |
| AAAACCTCTATAAGCTGACT+CGG | + | tig0021758:50808-50827 | None:intergenic | 35.0% | |
| !!! | TAGAGGTTTTAGAAGTAAGG+AGG | - | tig0021758:50818-50837 | Msa1393750:intron | 35.0% |
| !!! | AGAGGTTTTAGAAGTAAGGA+GGG | - | tig0021758:50819-50838 | Msa1393750:intron | 35.0% |
| AATTCAAGCCCTTACAAAAC+CGG | - | tig0021758:50903-50922 | Msa1393750:intron | 35.0% | |
| CTGCAAATGTTTATAAGTGG+TGG | + | tig0021758:50950-50969 | None:intergenic | 35.0% | |
| CACCACTTATAAACATTTGC+AGG | - | tig0021758:50948-50967 | Msa1393750:intron | 35.0% | |
| GACCTGCAAATGTTTATAAG+TGG | + | tig0021758:50953-50972 | None:intergenic | 35.0% | |
| TGTGATGCCATCTTAGAATT+TGG | - | tig0021758:51091-51110 | Msa1393750:intron | 35.0% | |
| GTGATGCCATCTTAGAATTT+GGG | - | tig0021758:51092-51111 | Msa1393750:intron | 35.0% | |
| !! | CGATTTTGTAAGAATGGGTT+AGG | + | tig0021758:51123-51142 | None:intergenic | 35.0% |
| ! | ATGCTTGAATGGTTAGTTGA+GGG | + | tig0021758:51314-51333 | None:intergenic | 35.0% |
| ! | TACATTGCTTTGTTGGATTG+TGG | - | tig0021758:51358-51377 | Msa1393750:CDS | 35.0% |
| ATATGATTATGTGGAAGAGC+TGG | - | tig0021758:51436-51455 | Msa1393750:intron | 35.0% | |
| ! | AGCATGAGAATAGGGTATTA+GGG | - | tig0021758:52185-52204 | Msa1393750:intron | 35.0% |
| ATAAATAGCACTCTCTGCTT+TGG | - | tig0021758:52297-52316 | Msa1393750:intron | 35.0% | |
| !!! | AGACTCAGTTTTGAAGTTTG+GGG | + | tig0021758:52347-52366 | None:intergenic | 35.0% |
| TCAAACCTGGGAAAACAAAT+TGG | + | tig0021758:52460-52479 | None:intergenic | 35.0% | |
| ! | GAATGTGATGTTCTCTGAAG+AGG | - | tig0021758:46937-46956 | Msa1393750:three_prime_UTR | 40.0% |
| GTCCCTTTAACTGATGTTGT+CGG | - | tig0021758:46995-47014 | Msa1393750:three_prime_UTR | 40.0% | |
| CACCGACAACATCAGTTAAA+GGG | + | tig0021758:47000-47019 | None:intergenic | 40.0% | |
| !! | GCACCGTTACTTTGAGATAT+TGG | - | tig0021758:47285-47304 | Msa1393750:intron | 40.0% |
| !! | ATTAACATGATGGGCCTGTT+TGG | + | tig0021758:47530-47549 | None:intergenic | 40.0% |
| ! | ACACGGAGCATTAACATGAT+GGG | + | tig0021758:47539-47558 | None:intergenic | 40.0% |
| ! | AACACGGAGCATTAACATGA+TGG | + | tig0021758:47540-47559 | None:intergenic | 40.0% |
| TCTAAGCTTTACTCCCACTT+GGG | - | tig0021758:47586-47605 | Msa1393750:intron | 40.0% | |
| CTAAACTAGCTCGCCAAAAT+TGG | + | tig0021758:47685-47704 | None:intergenic | 40.0% | |
| CTTCTTCACTGAGTAAAGCT+TGG | + | tig0021758:47737-47756 | None:intergenic | 40.0% | |
| CGTAGTGATTCTATGGTCTA+AGG | - | tig0021758:47891-47910 | Msa1393750:intron | 40.0% | |
| GTGTATCAGCTGTAATGTTC+AGG | - | tig0021758:48163-48182 | Msa1393750:intron | 40.0% | |
| ! | CATCTTTTTGTGAGGAGGAT+GGG | + | tig0021758:48299-48318 | None:intergenic | 40.0% |
| ! | TCATCTTTTTGTGAGGAGGA+TGG | + | tig0021758:48300-48319 | None:intergenic | 40.0% |
| ! | TTCGTCATCTTTTTGTGAGG+AGG | + | tig0021758:48304-48323 | None:intergenic | 40.0% |
| AAAAGAGAGAGCAAGAAGAG+CGG | + | tig0021758:48381-48400 | None:intergenic | 40.0% | |
| !!! | AAAGATGGTGTTGCTTTTGG+CGG | + | tig0021758:48479-48498 | None:intergenic | 40.0% |
| !!! | CCAAAAGATGGTGTTGCTTT+TGG | + | tig0021758:48482-48501 | None:intergenic | 40.0% |
| ! | CCAAAAGCAACACCATCTTT+TGG | - | tig0021758:48479-48498 | Msa1393750:intron | 40.0% |
| TAACAGTTCTTTGCCAATGC+GGG | - | tig0021758:48786-48805 | Msa1393750:intron | 40.0% | |
| ATGCAATTGTCAGGAGAAGA+AGG | + | tig0021758:48829-48848 | None:intergenic | 40.0% | |
| TCCTGACAATTGCATCACTT+GGG | - | tig0021758:48834-48853 | Msa1393750:intron | 40.0% | |
| ! | AATGCAAGACCCGCAAATTT+TGG | + | tig0021758:49082-49101 | None:intergenic | 40.0% |
| ! | CTTAGCTGCTGCAATGTTTT+AGG | - | tig0021758:49235-49254 | Msa1393750:intron | 40.0% |
| AATAATACACCAGGACACTG+GGG | + | tig0021758:49328-49347 | None:intergenic | 40.0% | |
| GTCTTTCAGATACAATGGTG+CGG | - | tig0021758:49458-49477 | Msa1393750:intron | 40.0% | |
| ! | CAGGCTTTTTGTGAAAAGCA+AGG | + | tig0021758:49573-49592 | None:intergenic | 40.0% |
| CAAGGGTCAAATCTTAACTC+TGG | - | tig0021758:49648-49667 | Msa1393750:intron | 40.0% | |
| GTTAACATCTGCAGTTGAGA+AGG | - | tig0021758:49795-49814 | Msa1393750:CDS | 40.0% | |
| AAAGTATGTTGTGGGCAAAG+AGG | + | tig0021758:50263-50282 | None:intergenic | 40.0% | |
| ! | CAGCATTTTTATGGATGGTG+TGG | - | tig0021758:50439-50458 | Msa1393750:intron | 40.0% |
| ! | GCATTTTTATGGATGGTGTG+GGG | - | tig0021758:50441-50460 | Msa1393750:intron | 40.0% |
| TCAAATGCTTATCAAGGGAC+AGG | - | tig0021758:50545-50564 | Msa1393750:intron | 40.0% | |
| CAAATGCTTATCAAGGGACA+GGG | - | tig0021758:50546-50565 | Msa1393750:intron | 40.0% | |
| ! | CCAAATTTGAAGCAAGAGTC+AGG | + | tig0021758:50774-50793 | None:intergenic | 40.0% |
| CCTGACTCTTGCTTCAAATT+TGG | - | tig0021758:50771-50790 | Msa1393750:intron | 40.0% | |
| !! | CTTACAAGCCGGTTTTGTAA+GGG | + | tig0021758:50914-50933 | None:intergenic | 40.0% |
| AGTTTCATCACCTTACAAGC+CGG | + | tig0021758:50925-50944 | None:intergenic | 40.0% | |
| TGTGTTAAGTGTCCCACATT+GGG | + | tig0021758:50984-51003 | None:intergenic | 40.0% | |
| TAACACACTTACTGACACCT+AGG | - | tig0021758:50997-51016 | Msa1393750:intron | 40.0% | |
| AGCCTATCCAAGATCTGTTT+GGG | + | tig0021758:51072-51091 | None:intergenic | 40.0% | |
| TGCCATCTTAGAATTTGGGA+TGG | - | tig0021758:51096-51115 | Msa1393750:intron | 40.0% | |
| ! | GCCATCTTAGAATTTGGGAT+GGG | - | tig0021758:51097-51116 | Msa1393750:intron | 40.0% |
| GGTTTGAACGACTTCCTAAT+TGG | - | tig0021758:51274-51293 | Msa1393750:CDS | 40.0% | |
| AGGTTGAAGGAGTTCCAATT+AGG | + | tig0021758:51291-51310 | None:intergenic | 40.0% | |
| ! | GATGCTTGAATGGTTAGTTG+AGG | + | tig0021758:51315-51334 | None:intergenic | 40.0% |
| AACCATTCAAGCATCCTACT+TGG | - | tig0021758:51320-51339 | Msa1393750:CDS | 40.0% | |
| ACCATTCAAGCATCCTACTT+GGG | - | tig0021758:51321-51340 | Msa1393750:CDS | 40.0% | |
| !! | AGGTCTTTGAAACATCGACA+CGG | - | tig0021758:51459-51478 | Msa1393750:intron | 40.0% |
| GATACTCAACTTAGAACTGC+CGG | + | tig0021758:51594-51613 | None:intergenic | 40.0% | |
| TAGGAACATGCATCTTCTCT+TGG | + | tig0021758:51658-51677 | None:intergenic | 40.0% | |
| TGAGGATGCATAACAAGCAA+GGG | + | tig0021758:52047-52066 | None:intergenic | 40.0% | |
| ATCGGAAACTATCAAGAAGC+AGG | + | tig0021758:52091-52110 | None:intergenic | 40.0% | |
| ATTGTGTGGAGCATGAGAAT+AGG | - | tig0021758:52176-52195 | Msa1393750:intron | 40.0% | |
| TTGTGTGGAGCATGAGAATA+GGG | - | tig0021758:52177-52196 | Msa1393750:intron | 40.0% | |
| ! | GAGCATGAGAATAGGGTATT+AGG | - | tig0021758:52184-52203 | Msa1393750:intron | 40.0% |
| ! | TGAGAATAGGGTATTAGGGA+AGG | - | tig0021758:52189-52208 | Msa1393750:intron | 40.0% |
| GCCCCCTATCTGTATTAAAT+TGG | - | tig0021758:52223-52242 | Msa1393750:intron | 40.0% | |
| GTTTGGGGAAATCACATTTC+TGG | + | tig0021758:52332-52351 | None:intergenic | 40.0% | |
| TCAAAACTGAGTCTATGGCA+TGG | - | tig0021758:52353-52372 | Msa1393750:intron | 40.0% | |
| GTACATTCTCTCTCAAACCT+GGG | + | tig0021758:52472-52491 | None:intergenic | 40.0% | |
| AGTACATTCTCTCTCAAACC+TGG | + | tig0021758:52473-52492 | None:intergenic | 40.0% | |
| ! | ACTTGTTGATCCATCTCCAA+AGG | + | tig0021758:52539-52558 | None:intergenic | 40.0% |
| CCACCGACAACATCAGTTAA+AGG | + | tig0021758:47001-47020 | None:intergenic | 45.0% | |
| CCTTTAACTGATGTTGTCGG+TGG | - | tig0021758:46998-47017 | Msa1393750:three_prime_UTR | 45.0% | |
| !!! | ACAGCTTCTCCACTTTTTCC+TGG | - | tig0021758:47029-47048 | Msa1393750:three_prime_UTR | 45.0% |
| !!! | TGTTTTGATACGCCGTCACA+TGG | - | tig0021758:47117-47136 | Msa1393750:three_prime_UTR | 45.0% |
| CTCTAAGCTTTACTCCCACT+TGG | - | tig0021758:47585-47604 | Msa1393750:intron | 45.0% | |
| ATCAAACCTGAGACCTTGAG+AGG | + | tig0021758:47651-47670 | None:intergenic | 45.0% | |
| ! | ATTCTCCCGGATGCCAATTT+TGG | - | tig0021758:47669-47688 | Msa1393750:intron | 45.0% |
| GTCTTCATCCCTCCTTGATA+AGG | - | tig0021758:47815-47834 | Msa1393750:intron | 45.0% | |
| GATTCTATGGTCTAAGGGCA+TGG | - | tig0021758:47897-47916 | Msa1393750:intron | 45.0% | |
| CAGCCGAAGTAGAAACTTAG+AGG | + | tig0021758:47957-47976 | None:intergenic | 45.0% | |
| CAAGAAACATACTGCGCTGA+AGG | - | tig0021758:48200-48219 | Msa1393750:intron | 45.0% | |
| !!! | TGTTGCTTTTGGCGGAAACA+TGG | + | tig0021758:48471-48490 | None:intergenic | 45.0% |
| CTCCTGACAATTGCATCACT+TGG | - | tig0021758:48833-48852 | Msa1393750:intron | 45.0% | |
| CCTGACAATTGCATCACTTG+GGG | - | tig0021758:48835-48854 | Msa1393750:intron | 45.0% | |
| CATCACTTGGGGTCCATTAT+TGG | - | tig0021758:48846-48865 | Msa1393750:intron | 45.0% | |
| ACTTGGGGTCCATTATTGGT+TGG | - | tig0021758:48850-48869 | Msa1393750:intron | 45.0% | |
| GTTACTCTTGTATGCCATGC+AGG | - | tig0021758:48997-49016 | Msa1393750:intron | 45.0% | |
| TGCCATGCAGGAAACAATGA+CGG | - | tig0021758:49009-49028 | Msa1393750:intron | 45.0% | |
| TTCCGTCATTGTTTCCTGCA+TGG | + | tig0021758:49014-49033 | None:intergenic | 45.0% | |
| TAACCTGTCGACGGAAGTTA+TGG | + | tig0021758:49540-49559 | None:intergenic | 45.0% | |
| ATAACTTCCGTCGACAGGTT+AGG | - | tig0021758:49539-49558 | Msa1393750:intron | 45.0% | |
| AACTACTCCTAACCTGTCGA+CGG | + | tig0021758:49549-49568 | None:intergenic | 45.0% | |
| AAGATTTGAAGGAGGGACAC+AGG | + | tig0021758:50189-50208 | None:intergenic | 45.0% | |
| GTAAGGAGGGAAGATCTTTG+TGG | - | tig0021758:50832-50851 | Msa1393750:intron | 45.0% | |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | + | tig0021758:50915-50934 | None:intergenic | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+AGG | - | tig0021758:50912-50931 | Msa1393750:intron | 45.0% |
| AGGTCATATCTCACCCAATG+TGG | - | tig0021758:50968-50987 | Msa1393750:intron | 45.0% | |
| GGTCATATCTCACCCAATGT+GGG | - | tig0021758:50969-50988 | Msa1393750:intron | 45.0% | |
| GTGTGTTAAGTGTCCCACAT+TGG | + | tig0021758:50985-51004 | None:intergenic | 45.0% | |
| ACTTACTGACACCTAGGACT+GGG | - | tig0021758:51003-51022 | Msa1393750:intron | 45.0% | |
| CAGCCTATCCAAGATCTGTT+TGG | + | tig0021758:51073-51092 | None:intergenic | 45.0% | |
| ! | GCCCATCCCAAATTCTAAGA+TGG | + | tig0021758:51101-51120 | None:intergenic | 45.0% |
| ! | CTTGAATGGTTAGTTGAGGG+AGG | + | tig0021758:51311-51330 | None:intergenic | 45.0% |
| TCCCAAGTAGGATGCTTGAA+TGG | + | tig0021758:51325-51344 | None:intergenic | 45.0% | |
| AAGCAAGAACTGTCCCAAGT+AGG | + | tig0021758:51337-51356 | None:intergenic | 45.0% | |
| TGATTATGTGGAAGAGCTGG+AGG | - | tig0021758:51439-51458 | Msa1393750:intron | 45.0% | |
| GAAGATGCATGTTCCTATCC+TGG | - | tig0021758:51661-51680 | Msa1393750:intron | 45.0% | |
| CTGAGGATGCATAACAAGCA+AGG | + | tig0021758:52048-52067 | None:intergenic | 45.0% | |
| ! | GAATAGGGTATTAGGGAAGG+AGG | - | tig0021758:52192-52211 | Msa1393750:intron | 45.0% |
| ! | ATTAGGGAAGGAGGTATGCA+TGG | - | tig0021758:52201-52220 | Msa1393750:intron | 45.0% |
| TGAGAGAGAATGTACTTGCC+CGG | - | tig0021758:52477-52496 | Msa1393750:intron | 45.0% | |
| !! | AAAAAATAAAAATAAGTTTA+TGG | - | tig0021758:52669-52688 | Msa1393750:intron | 5.0% |
| ! | AGCTGCTGCTTCTCAACAAG+AGG | - | tig0021758:46871-46890 | Msa1393750:three_prime_UTR | 50.0% |
| !! | CATGATGGGCCTGTTTGGAT+TGG | + | tig0021758:47525-47544 | None:intergenic | 50.0% |
| AGCTTTACTCCCACTTGGGT+TGG | - | tig0021758:47590-47609 | Msa1393750:intron | 50.0% | |
| GGTCTCAGGTTTGATTCTCC+CGG | - | tig0021758:47656-47675 | Msa1393750:intron | 50.0% | |
| AGCTCGCCAAAATTGGCATC+CGG | + | tig0021758:47678-47697 | None:intergenic | 50.0% | |
| AGTTCTTTGCCAATGCGGGT+TGG | - | tig0021758:48790-48809 | Msa1393750:intron | 50.0% | |
| CCCCAAGTGATGCAATTGTC+AGG | + | tig0021758:48838-48857 | None:intergenic | 50.0% | |
| GCTATTGTGTGCGCTGTTGA+TGG | - | tig0021758:48940-48959 | Msa1393750:intron | 50.0% | |
| AGATACAATGGTGCGGCAAG+TGG | - | tig0021758:49465-49484 | Msa1393750:intron | 50.0% | |
| CTTTCTTGCCAGCACCAGTT+TGG | - | tig0021758:49698-49717 | Msa1393750:intron | 50.0% | |
| AATCGGTACCAAACTGGTGC+TGG | + | tig0021758:49709-49728 | None:intergenic | 50.0% | |
| TTTATGGATGGTGTGGGGAC+TGG | - | tig0021758:50446-50465 | Msa1393750:intron | 50.0% | |
| TTATGGATGGTGTGGGGACT+GGG | - | tig0021758:50447-50466 | Msa1393750:intron | 50.0% | |
| TCAAGGGACAGGGAAACGTA+AGG | - | tig0021758:50556-50575 | Msa1393750:intron | 50.0% | |
| TCTGCCGAGTCAGCTTATAG+AGG | - | tig0021758:50801-50820 | Msa1393750:intron | 50.0% | |
| CACTTACTGACACCTAGGAC+TGG | - | tig0021758:51002-51021 | Msa1393750:intron | 50.0% | |
| AGCGATGACCTGATAGCATG+TGG | - | tig0021758:51046-51065 | Msa1393750:intron | 50.0% | |
| TGTTTGGGCCACATGCTATC+AGG | + | tig0021758:51057-51076 | None:intergenic | 50.0% | |
| CATGTGGCCCAAACAGATCT+TGG | - | tig0021758:51062-51081 | Msa1393750:intron | 50.0% | |
| GGCCCAAACAGATCTTGGAT+AGG | - | tig0021758:51067-51086 | Msa1393750:intron | 50.0% | |
| ! | GGTTAGTTGAGGGAGGTTGA+AGG | + | tig0021758:51304-51323 | None:intergenic | 50.0% |
| TAAATGCAGGTACGTGCTGC+TGG | - | tig0021758:51614-51633 | Msa1393750:intron | 50.0% | |
| ! | GCGAGGAGTGTGTATCTGAA+TGG | - | tig0021758:51705-51724 | Msa1393750:intron | 50.0% |
| GGGGATATGCCCTATACTGA+AGG | + | tig0021758:51845-51864 | None:intergenic | 50.0% | |
| ACTACCAATGTCCTGCACAC+CGG | + | tig0021758:52499-52518 | None:intergenic | 50.0% | |
| TGGTAGTACCTGCTCATCTG+CGG | - | tig0021758:52512-52531 | Msa1393750:intron | 50.0% | |
| TGATTCCTCGCACGTGGCAA+CGG | - | tig0021758:46843-46862 | Msa1393750:three_prime_UTR | 55.0% | |
| GCTGCTTCTCAACAAGAGGC+TGG | - | tig0021758:46875-46894 | Msa1393750:three_prime_UTR | 55.0% | |
| ! | AGAGGCTCACCGTGCTATTG+CGG | - | tig0021758:46955-46974 | Msa1393750:three_prime_UTR | 55.0% |
| GCGTTTGTGTAAGCTCGCAC+AGG | - | tig0021758:47365-47384 | Msa1393750:intron | 55.0% | |
| !! | TTGGGTTGGCCTGGTGGTAT+TGG | - | tig0021758:47604-47623 | Msa1393750:intron | 55.0% |
| !! | TTGGCCTGGTGGTATTGGCT+TGG | - | tig0021758:47609-47628 | Msa1393750:intron | 55.0% |
| !! | TGGCCTGGTGGTATTGGCTT+GGG | - | tig0021758:47610-47629 | Msa1393750:intron | 55.0% |
| !! | GTGGTATTGGCTTGGGACCT+TGG | - | tig0021758:47617-47636 | Msa1393750:intron | 55.0% |
| ! | CTTGAGAGGAGCACACTCCA+AGG | + | tig0021758:47637-47656 | None:intergenic | 55.0% |
| CTTGGAGTGTGCTCCTCTCA+AGG | - | tig0021758:47635-47654 | Msa1393750:intron | 55.0% | |
| TGTGCTCCTCTCAAGGTCTC+AGG | - | tig0021758:47642-47661 | Msa1393750:intron | 55.0% | |
| GCTCGCCAAAATTGGCATCC+GGG | + | tig0021758:47677-47696 | None:intergenic | 55.0% | |
| TTGGCGGAAACATGGCCAGA+GGG | + | tig0021758:48463-48482 | None:intergenic | 55.0% | |
| TTTGGCGGAAACATGGCCAG+AGG | + | tig0021758:48464-48483 | None:intergenic | 55.0% | |
| CCAAGTAAGCCAACCCGCAT+TGG | + | tig0021758:48802-48821 | None:intergenic | 55.0% | |
| !! | CCAATGCGGGTTGGCTTACT+TGG | - | tig0021758:48799-48818 | Msa1393750:intron | 55.0% |
| TACACCAGGACACTGGGGAT+GGG | + | tig0021758:49323-49342 | None:intergenic | 55.0% | |
| ATACACCAGGACACTGGGGA+TGG | + | tig0021758:49324-49343 | None:intergenic | 55.0% | |
| AATGGTGCGGCAAGTGGCAA+TGG | - | tig0021758:49471-49490 | Msa1393750:intron | 55.0% | |
| ACGCCATAACTTCCGTCGAC+AGG | - | tig0021758:49534-49553 | Msa1393750:intron | 55.0% | |
| ! | GTTCCTATCCTGGTTCGCTG+TGG | - | tig0021758:51671-51690 | Msa1393750:intron | 55.0% |
| TGTCCACAGCGAACCAGGAT+AGG | + | tig0021758:51677-51696 | None:intergenic | 55.0% | |
| ACATGTGTCCACAGCGAACC+AGG | + | tig0021758:51682-51701 | None:intergenic | 55.0% | |
| CTGTGGACACATGTTCTGCG+AGG | - | tig0021758:51688-51707 | Msa1393750:intron | 55.0% | |
| AATGTACTTGCCCGGTGTGC+AGG | - | tig0021758:52485-52504 | Msa1393750:intron | 55.0% | |
| CTACCAATGTCCTGCACACC+GGG | + | tig0021758:52498-52517 | None:intergenic | 55.0% | |
| ! | CATCTGCGGACCTTTGGAGA+TGG | - | tig0021758:52526-52545 | Msa1393750:intron | 55.0% |
| CTCTGTCCGCCGCAATAGCA+CGG | + | tig0021758:46967-46986 | None:intergenic | 60.0% | |
| !! | TACTCCCACTTGGGTTGGCC+TGG | - | tig0021758:47595-47614 | Msa1393750:intron | 60.0% |
| ACCACCAGGCCAACCCAAGT+GGG | + | tig0021758:47602-47621 | None:intergenic | 60.0% | |
| TACCACCAGGCCAACCCAAG+TGG | + | tig0021758:47603-47622 | None:intergenic | 60.0% | |
| GGTCCCAAGCCAATACCACC+AGG | + | tig0021758:47616-47635 | None:intergenic | 60.0% | |
| TCTTCCCATCCCCAGTGTCC+TGG | - | tig0021758:49316-49335 | Msa1393750:intron | 60.0% | |
| GATGGTGTGGGGACTGGGAA+GGG | - | tig0021758:50452-50471 | Msa1393750:intron | 60.0% | |
| GACACCTAGGACTGGGCATC+TGG | - | tig0021758:51010-51029 | Msa1393750:intron | 60.0% | |
| TTGCCCGGTGTGCAGGACAT+TGG | - | tig0021758:52492-52511 | Msa1393750:intron | 60.0% | |
| CCAAAGGTCCGCAGATGAGC+AGG | + | tig0021758:52523-52542 | None:intergenic | 60.0% | |
| CCTGCTCATCTGCGGACCTT+TGG | - | tig0021758:52520-52539 | Msa1393750:intron | 60.0% | |
| CGAAACCGTTGCCACGTGCG+AGG | + | tig0021758:46851-46870 | None:intergenic | 65.0% | |
| ! | GGCTCACCGTGCTATTGCGG+CGG | - | tig0021758:46958-46977 | Msa1393750:three_prime_UTR | 65.0% |
| !! | TCCCACTTGGGTTGGCCTGG+TGG | - | tig0021758:47598-47617 | Msa1393750:intron | 65.0% |
| GGATGGTGTGGGGACTGGGA+AGG | - | tig0021758:50451-50470 | Msa1393750:intron | 65.0% | |
| CGCACCAGATGCCCAGTCCT+AGG | + | tig0021758:51017-51036 | None:intergenic | 65.0% | |
| AGGACTGGGCATCTGGTGCG+TGG | - | tig0021758:51017-51036 | Msa1393750:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021758 | gene | 46842 | 52903 | 46842 | ID=Msa1393750;Name=Msa1393750 |
| tig0021758 | mRNA | 46842 | 52903 | 46842 | ID=Msa1393750-mRNA-1;Parent=Msa1393750;Name=Msa1393750-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0.75|0.66|1|0.75|0.66|9|324|342 |
| tig0021758 | exon | 46842 | 47271 | 46842 | ID=Msa1393750-mRNA-1:exon:14003;Parent=Msa1393750-mRNA-1 |
| tig0021758 | exon | 48034 | 48122 | 48034 | ID=Msa1393750-mRNA-1:exon:14002;Parent=Msa1393750-mRNA-1 |
| tig0021758 | exon | 49746 | 49823 | 49746 | ID=Msa1393750-mRNA-1:exon:14001;Parent=Msa1393750-mRNA-1 |
| tig0021758 | exon | 49929 | 50093 | 49929 | ID=Msa1393750-mRNA-1:exon:14000;Parent=Msa1393750-mRNA-1 |
| tig0021758 | exon | 50190 | 50278 | 50190 | ID=Msa1393750-mRNA-1:exon:13999;Parent=Msa1393750-mRNA-1 |
| tig0021758 | exon | 51215 | 51383 | 51215 | ID=Msa1393750-mRNA-1:exon:13998;Parent=Msa1393750-mRNA-1 |
| tig0021758 | exon | 51524 | 51600 | 51524 | ID=Msa1393750-mRNA-1:exon:13997;Parent=Msa1393750-mRNA-1 |
| tig0021758 | exon | 52603 | 52678 | 52603 | ID=Msa1393750-mRNA-1:exon:13996;Parent=Msa1393750-mRNA-1 |
| tig0021758 | exon | 52724 | 52903 | 52724 | ID=Msa1393750-mRNA-1:exon:13995;Parent=Msa1393750-mRNA-1 |
| tig0021758 | CDS | 52724 | 52903 | 52724 | ID=Msa1393750-mRNA-1:cds;Parent=Msa1393750-mRNA-1 |
| tig0021758 | CDS | 52603 | 52678 | 52603 | ID=Msa1393750-mRNA-1:cds;Parent=Msa1393750-mRNA-1 |
| tig0021758 | CDS | 51524 | 51600 | 51524 | ID=Msa1393750-mRNA-1:cds;Parent=Msa1393750-mRNA-1 |
| tig0021758 | CDS | 51215 | 51383 | 51215 | ID=Msa1393750-mRNA-1:cds;Parent=Msa1393750-mRNA-1 |
| tig0021758 | CDS | 50190 | 50278 | 50190 | ID=Msa1393750-mRNA-1:cds;Parent=Msa1393750-mRNA-1 |
| tig0021758 | CDS | 49929 | 50093 | 49929 | ID=Msa1393750-mRNA-1:cds;Parent=Msa1393750-mRNA-1 |
| tig0021758 | CDS | 49746 | 49823 | 49746 | ID=Msa1393750-mRNA-1:cds;Parent=Msa1393750-mRNA-1 |
| tig0021758 | CDS | 48034 | 48122 | 48034 | ID=Msa1393750-mRNA-1:cds;Parent=Msa1393750-mRNA-1 |
| tig0021758 | CDS | 47166 | 47271 | 47166 | ID=Msa1393750-mRNA-1:cds;Parent=Msa1393750-mRNA-1 |
| tig0021758 | three_prime_UTR | 46842 | 47165 | 46842 | ID=Msa1393750-mRNA-1:three_prime_utr;Parent=Msa1393750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
