Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517220 | XP_013461478.2 | 82.873 | 362 | 33 | 3 | 1 | 342 | 1 | 353 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517220 | sp|Q96EX2|RNFT2_HUMAN | 28.000 | 325 | 208 | 9 | 32 | 340 | 128 | 442 | 2.48e-28 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517220 | A0A396IZB5 | 82.873 | 362 | 33 | 3 | 1 | 342 | 1 | 353 | 0.0 | 578 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0426510 | Msa0517220 | 0.848966 | 4.375599e-60 | -8.615850e-47 |
| Msa0472980 | Msa0517220 | 0.935913 | 4.008356e-97 | -8.615850e-47 |
| Msa0517220 | Msa1306960 | 0.802837 | 4.641829e-49 | -8.615850e-47 |
| Msa0517220 | Msa1393750 | 0.975306 | 1.035366e-139 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517220 | MtrunA17_Chr3g0128531 | 82.873 | 362 | 33 | 3 | 1 | 342 | 1 | 353 | 0.0 | 578 |
| Msa0517220 | MtrunA17_Chr5g0428621 | 69.580 | 286 | 81 | 2 | 61 | 341 | 196 | 480 | 4.78e-144 | 416 |
| Msa0517220 | MtrunA17_Chr7g0245321 | 62.807 | 285 | 101 | 1 | 62 | 341 | 141 | 425 | 4.48e-123 | 360 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517220 | AT5G01960.1 | 63.732 | 284 | 98 | 1 | 62 | 340 | 141 | 424 | 8.00e-135 | 390 |
Find 67 sgRNAs with CRISPR-Local
Find 393 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGAAGACGAAATTCTTTA+TGG | 0.134162 | 3_4:-68700163 | Msa0517220:CDS |
| TTCTATGAATTTGAGATTAA+AGG | 0.185855 | 3_4:-68697467 | Msa0517220:three_prime_UTR |
| GAACGCAATATTCATCATTT+TGG | 0.200530 | 3_4:-68701618 | Msa0517220:CDS |
| CCAAAAGATGGTGTTGCTTT+TGG | 0.234388 | 3_4:+68701641 | None:intergenic |
| GTCCAAATGTTTAGTAATAA+TGG | 0.237018 | 3_4:-68697495 | Msa0517220:three_prime_UTR |
| ATCAACAACAAGAGCGAAAA+AGG | 0.256421 | 3_4:+68703030 | None:intergenic |
| AACAATTGTGATAAACATTA+AGG | 0.268620 | 3_4:-68697227 | None:intergenic |
| ATCCATTATTACTAAACATT+TGG | 0.291163 | 3_4:+68697493 | None:intergenic |
| CCACCGACAACATCAGTTAA+AGG | 0.319245 | 3_4:+68703126 | None:intergenic |
| CCAAAAGCAACACCATCTTT+TGG | 0.327744 | 3_4:-68701641 | Msa0517220:CDS |
| GTTTATCACAATTGTTATCA+TGG | 0.359540 | 3_4:+68697234 | None:intergenic |
| GCAGATTTCTTTGTCACAAT+TGG | 0.363731 | 3_4:-68701979 | Msa0517220:intron |
| CTATGCATTTACGAGTGTTA+TGG | 0.387657 | 3_4:-68701701 | Msa0517220:CDS |
| CCTGCTCATCTGCGGACCTT+TGG | 0.398301 | 3_4:-68697589 | Msa0517220:CDS |
| GTGTATCAGCTGTAATGTTC+AGG | 0.404247 | 3_4:-68701957 | Msa0517220:CDS |
| TAACCTGTCGACGGAAGTTA+TGG | 0.418408 | 3_4:+68700581 | None:intergenic |
| GTCCCTTTAACTGATGTTGT+CGG | 0.452080 | 3_4:-68703129 | Msa0517220:CDS |
| CTTTCTTGCCAGCACCAGTT+TGG | 0.452560 | 3_4:-68700420 | Msa0517220:CDS |
| AATGTACTTGCCCGGTGTGC+AGG | 0.460660 | 3_4:-68697624 | Msa0517220:CDS |
| CTACCAATGTCCTGCACACC+GGG | 0.467233 | 3_4:+68697614 | None:intergenic |
| CACCGACAACATCAGTTAAA+GGG | 0.474359 | 3_4:+68703127 | None:intergenic |
| CCAAAGGTCCGCAGATGAGC+AGG | 0.477758 | 3_4:+68697589 | None:intergenic |
| CTCTTCTCATCAATTATCAC+AGG | 0.485206 | 3_4:-68700364 | Msa0517220:CDS |
| AATCGGTACCAAACTGGTGC+TGG | 0.486207 | 3_4:+68700412 | None:intergenic |
| CAAGGGTCAAATCTTAACTC+TGG | 0.491542 | 3_4:-68700470 | Msa0517220:intron |
| GAAGATGCATGTTCCTATCC+TGG | 0.496904 | 3_4:-68698448 | Msa0517220:CDS |
| TAGGAACATGCATCTTCTCT+TGG | 0.500016 | 3_4:+68698454 | None:intergenic |
| CTTCTTCTTCTTCATCATCA+CGG | 0.500594 | 3_4:-68703209 | Msa0517220:CDS |
| ACGCCATAACTTCCGTCGAC+AGG | 0.500970 | 3_4:-68700584 | Msa0517220:intron |
| TGTTTATGCTACATCAGAAC+AGG | 0.501816 | 3_4:-68700140 | Msa0517220:intron |
| TAAATGCAGGTACGTGCTGC+TGG | 0.508684 | 3_4:-68698495 | Msa0517220:intron |
| AATATTGCGTTCCCAAAAGA+TGG | 0.512320 | 3_4:+68701629 | None:intergenic |
| TGTCCACAGCGAACCAGGAT+AGG | 0.526498 | 3_4:+68698435 | None:intergenic |
| TGAGAGAGAATGTACTTGCC+CGG | 0.526955 | 3_4:-68697632 | Msa0517220:CDS |
| CATCTGCGGACCTTTGGAGA+TGG | 0.534634 | 3_4:-68697583 | Msa0517220:CDS |
| CTCTGTCCGCCGCAATAGCA+CGG | 0.540543 | 3_4:+68703160 | None:intergenic |
| AAATGTTTAGTAATAATGGA+TGG | 0.543167 | 3_4:-68697491 | Msa0517220:three_prime_UTR |
| ACATGTGTCCACAGCGAACC+AGG | 0.543274 | 3_4:+68698430 | None:intergenic |
| GCTGCTTCTCAACAAGAGGC+TGG | 0.544863 | 3_4:-68703249 | Msa0517220:CDS |
| ATTATTACTAAACATTTGGA+CGG | 0.545707 | 3_4:+68697497 | None:intergenic |
| AATGGTGCGGCAAGTGGCAA+TGG | 0.548641 | 3_4:-68700647 | Msa0517220:CDS |
| TGATTCCTCGCACGTGGCAA+CGG | 0.549343 | 3_4:-68703281 | Msa0517220:CDS |
| AGCTGCTGCTTCTCAACAAG+AGG | 0.550089 | 3_4:-68703253 | Msa0517220:CDS |
| CAAGAAACATACTGCGCTGA+AGG | 0.554124 | 3_4:-68701920 | Msa0517220:intron |
| TTGCCCGGTGTGCAGGACAT+TGG | 0.557576 | 3_4:-68697617 | Msa0517220:CDS |
| GTTAACATCTGCAGTTGAGA+AGG | 0.561594 | 3_4:-68700323 | Msa0517220:intron |
| AGATACAATGGTGCGGCAAG+TGG | 0.567277 | 3_4:-68700653 | Msa0517220:CDS |
| CCTTTAACTGATGTTGTCGG+TGG | 0.583319 | 3_4:-68703126 | Msa0517220:CDS |
| GAATGTGATGTTCTCTGAAG+AGG | 0.584677 | 3_4:-68703187 | Msa0517220:CDS |
| TCATTGGCTTTCAGATACAA+TGG | 0.588648 | 3_4:-68700665 | Msa0517220:intron |
| CATTAATCATTATCATCATG+AGG | 0.600969 | 3_4:+68697297 | None:intergenic |
| ACATCAGTTAAAGGGACTAA+CGG | 0.601383 | 3_4:+68703135 | None:intergenic |
| AGAGGCTCACCGTGCTATTG+CGG | 0.605547 | 3_4:-68703169 | Msa0517220:CDS |
| AAAAGAGAGAGCAAGAAGAG+CGG | 0.612995 | 3_4:+68701742 | None:intergenic |
| GGCTCACCGTGCTATTGCGG+CGG | 0.614817 | 3_4:-68703166 | Msa0517220:CDS |
| CGAAACCGTTGCCACGTGCG+AGG | 0.614851 | 3_4:+68703276 | None:intergenic |
| ACTACCAATGTCCTGCACAC+CGG | 0.615463 | 3_4:+68697613 | None:intergenic |
| AACTACTCCTAACCTGTCGA+CGG | 0.623342 | 3_4:+68700572 | None:intergenic |
| AAATCATACATTCCATGTGA+CGG | 0.624468 | 3_4:+68702995 | None:intergenic |
| GTTCCTATCCTGGTTCGCTG+TGG | 0.632151 | 3_4:-68698438 | Msa0517220:CDS |
| TGATCATGATTCCTCGCACG+TGG | 0.632911 | 3_4:-68703287 | None:intergenic |
| TTGGCGGAAACATGGCCAGA+GGG | 0.641387 | 3_4:+68701660 | None:intergenic |
| ACTTGTTGATCCATCTCCAA+AGG | 0.643362 | 3_4:+68697573 | None:intergenic |
| GGCTTTCAGATACAATGGTG+CGG | 0.644614 | 3_4:-68700660 | Msa0517220:intron |
| TGGTAGTACCTGCTCATCTG+CGG | 0.645210 | 3_4:-68697597 | Msa0517220:CDS |
| TTTGGCGGAAACATGGCCAG+AGG | 0.658754 | 3_4:+68701659 | None:intergenic |
| CTGTGGACACATGTTCTGCG+AGG | 0.696401 | 3_4:-68698421 | Msa0517220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTGTAATAAGTTTATT+TGG | + | chr3_4:68699428-68699447 | None:intergenic | 10.0% |
| !!! | ATCATATTCTTTTTTTTTTA+AGG | + | chr3_4:68700872-68700891 | None:intergenic | 10.0% |
| !! | ATATACTAATATTTGTATAA+TGG | - | chr3_4:68701944-68701963 | Msa0517220:CDS | 10.0% |
| !! | TTATTCTATAATATAAAAGA+AGG | + | chr3_4:68702795-68702814 | None:intergenic | 10.0% |
| !! | TAGTATAATCTTTAATCATA+TGG | - | chr3_4:68697618-68697637 | Msa0517220:CDS | 15.0% |
| !!! | TTTTATGTTCAAAACAAAAA+TGG | + | chr3_4:68698376-68698395 | None:intergenic | 15.0% |
| !! | TTTCAAAATGAAAATTCTAA+AGG | + | chr3_4:68698640-68698659 | None:intergenic | 15.0% |
| !! | TAAACAAAGTTATTCAAATT+TGG | + | chr3_4:68699147-68699166 | None:intergenic | 15.0% |
| !!! | AAATTTGAATAACTTTGTTT+AGG | - | chr3_4:68699146-68699165 | Msa0517220:intron | 15.0% |
| !!! | AATTTGAATAACTTTGTTTA+GGG | - | chr3_4:68699147-68699166 | Msa0517220:intron | 15.0% |
| !!! | AAATGTTTTAAATTGTTTCA+AGG | - | chr3_4:68700022-68700041 | Msa0517220:intron | 15.0% |
| !!! | AATGTTTTAAATTGTTTCAA+GGG | - | chr3_4:68700023-68700042 | Msa0517220:intron | 15.0% |
| !!! | AAAGAAAATGGAATAATTTT+GGG | + | chr3_4:68700273-68700292 | None:intergenic | 15.0% |
| !!! | TAAAGAAAATGGAATAATTT+TGG | + | chr3_4:68700274-68700293 | None:intergenic | 15.0% |
| !! | CTATAAAAGTTATTGAAAAT+TGG | - | chr3_4:68700523-68700542 | Msa0517220:intron | 15.0% |
| !! | AAAGGAATTATATACTTAAA+TGG | - | chr3_4:68700618-68700637 | Msa0517220:CDS | 15.0% |
| !! | TCTAAAAATGTGTTTATAAA+TGG | + | chr3_4:68701537-68701556 | None:intergenic | 15.0% |
| !!! | ATTTAAGACAAATAAACTAT+AGG | - | chr3_4:68702184-68702203 | Msa0517220:intron | 15.0% |
| !!! | TTGTTTTTATTACCTTATCA+AGG | + | chr3_4:68698218-68698237 | None:intergenic | 20.0% |
| !! | ATAAGGTAATAAAAACAACA+TGG | - | chr3_4:68698220-68698239 | Msa0517220:intron | 20.0% |
| !! | ATATCATACAGTTAAATTGA+TGG | + | chr3_4:68698495-68698514 | None:intergenic | 20.0% |
| !!! | ATATTCATCATTTTGGTTAA+TGG | - | chr3_4:68698899-68698918 | Msa0517220:intron | 20.0% |
| !! | TTAAAGACTAAAGTATATCA+AGG | - | chr3_4:68699067-68699086 | Msa0517220:intron | 20.0% |
| !! | TGATATTATCACATAAATTG+TGG | - | chr3_4:68699290-68699309 | Msa0517220:intron | 20.0% |
| !! | AAATTGTGGAATATATCAAT+TGG | - | chr3_4:68699304-68699323 | Msa0517220:intron | 20.0% |
| !!! | ATGTTTCTTTTAGAATTTTC+AGG | - | chr3_4:68699358-68699377 | Msa0517220:intron | 20.0% |
| !!! | TGTTTCTTTTAGAATTTTCA+GGG | - | chr3_4:68699359-68699378 | Msa0517220:intron | 20.0% |
| !!! | CAATTATTCTAATTCTTTTG+TGG | - | chr3_4:68699783-68699802 | Msa0517220:intron | 20.0% |
| !!! | AAGCTTTCATTCTTTAAAAT+TGG | - | chr3_4:68700211-68700230 | Msa0517220:intron | 20.0% |
| !! | AAAAATGATCTGATTAAATC+TGG | - | chr3_4:68700404-68700423 | Msa0517220:CDS | 20.0% |
| !!! | AATTTTAGAGGTTTAAGATA+AGG | - | chr3_4:68700553-68700572 | Msa0517220:intron | 20.0% |
| !!! | ATTTTAGAGGTTTAAGATAA+GGG | - | chr3_4:68700554-68700573 | Msa0517220:intron | 20.0% |
| !! | TCATTTATGCAATCAAATAA+AGG | - | chr3_4:68700600-68700619 | Msa0517220:CDS | 20.0% |
| !!! | ATAATAGAACAGCATTTTTA+TGG | - | chr3_4:68700822-68700841 | Msa0517220:intron | 20.0% |
| !!! | GTTTTTGTATACTTTTTTTG+TGG | - | chr3_4:68700971-68700990 | Msa0517220:intron | 20.0% |
| !! | TAATCTACATATACAAACAA+GGG | + | chr3_4:68701096-68701115 | None:intergenic | 20.0% |
| !! | TTAATCTACATATACAAACA+AGG | + | chr3_4:68701097-68701116 | None:intergenic | 20.0% |
| !! | AAAATGTGTTTATAAATGGT+GGG | + | chr3_4:68701533-68701552 | None:intergenic | 20.0% |
| !! | AAAAATGTGTTTATAAATGG+TGG | + | chr3_4:68701534-68701553 | None:intergenic | 20.0% |
| !! | GTAAACCTAAAATAATTATG+TGG | + | chr3_4:68702302-68702321 | None:intergenic | 20.0% |
| !! | ATAAATTCAGAAGATGAAAA+TGG | - | chr3_4:68702379-68702398 | Msa0517220:intron | 20.0% |
| !!! | AAAAGCATACATAAAGAAAT+CGG | + | chr3_4:68702510-68702529 | None:intergenic | 20.0% |
| !!! | ATTTCTTTATGTATGCTTTT+CGG | - | chr3_4:68702510-68702529 | Msa0517220:intron | 20.0% |
| !! | TAACCAATTTAATACAGATA+GGG | + | chr3_4:68702630-68702649 | None:intergenic | 20.0% |
| !! | ATAACCAATTTAATACAGAT+AGG | + | chr3_4:68702631-68702650 | None:intergenic | 20.0% |
| !! | TATCTGTATTAAATTGGTTA+TGG | - | chr3_4:68702630-68702649 | Msa0517220:intron | 20.0% |
| !! | TAATGTATCAATTATGGAAA+TGG | - | chr3_4:68702657-68702676 | Msa0517220:intron | 20.0% |
| !! | ATTATTACTAAACATTTGGA+CGG | + | chr3_4:68703016-68703035 | None:intergenic | 20.0% |
| !! | ATCCATTATTACTAAACATT+TGG | + | chr3_4:68703020-68703039 | None:intergenic | 20.0% |
| !!! | AAATGTTTAGTAATAATGGA+TGG | - | chr3_4:68703019-68703038 | Msa0517220:CDS | 20.0% |
| !!! | TTCTATGAATTTGAGATTAA+AGG | - | chr3_4:68703043-68703062 | Msa0517220:CDS | 20.0% |
| !! | TGAAAAAGAAAGAAAAGAAA+GGG | + | chr3_4:68703130-68703149 | None:intergenic | 20.0% |
| !! | ATGAAAAAGAAAGAAAAGAA+AGG | + | chr3_4:68703131-68703150 | None:intergenic | 20.0% |
| ! | TAAGGATCATTACAAAAACA+CGG | + | chr3_4:68697942-68697961 | None:intergenic | 25.0% |
| !! | TTTTATTACCTTATCAAGGA+GGG | + | chr3_4:68698214-68698233 | None:intergenic | 25.0% |
| !! | TTTTTATTACCTTATCAAGG+AGG | + | chr3_4:68698215-68698234 | None:intergenic | 25.0% |
| ! | TATGTTCAAAACAAAAATGG+TGG | + | chr3_4:68698373-68698392 | None:intergenic | 25.0% |
| ! | AGTTAGTGTGTTATGTTAAT+AGG | - | chr3_4:68698410-68698429 | Msa0517220:intron | 25.0% |
| ! | GTTAGTGTGTTATGTTAATA+GGG | - | chr3_4:68698411-68698430 | Msa0517220:intron | 25.0% |
| ! | TTAGTGTGTTATGTTAATAG+GGG | - | chr3_4:68698412-68698431 | Msa0517220:intron | 25.0% |
| !! | ATACAGTTAAATTGATGGAT+TGG | + | chr3_4:68698490-68698509 | None:intergenic | 25.0% |
| ! | GATAAAGCAAATAAATTGTC+TGG | + | chr3_4:68698975-68698994 | None:intergenic | 25.0% |
| ! | GACAATTTATTTGCTTTATC+AGG | - | chr3_4:68698975-68698994 | Msa0517220:intron | 25.0% |
| !! | AGTCTTTTGTATTTAATCAG+TGG | - | chr3_4:68699114-68699133 | Msa0517220:intron | 25.0% |
| !! | GTCTTTTGTATTTAATCAGT+GGG | - | chr3_4:68699115-68699134 | Msa0517220:intron | 25.0% |
| ! | ATCAATTAAAATGAGAAGTG+CGG | + | chr3_4:68699274-68699293 | None:intergenic | 25.0% |
| !!! | AAGTTTTGATCCAAAATTTG+CGG | - | chr3_4:68699459-68699478 | Msa0517220:intron | 25.0% |
| ! | GCATGAAAAATACTTCAAAT+TGG | + | chr3_4:68699500-68699519 | None:intergenic | 25.0% |
| ! | AAACTATACTTGAAAACTAC+AGG | + | chr3_4:68699984-68700003 | None:intergenic | 25.0% |
| ! | AGTCCATGTAAAAGAAAAAT+CGG | + | chr3_4:68700118-68700137 | None:intergenic | 25.0% |
| !! | TTTTTCTTTTACATGGACTT+TGG | - | chr3_4:68700119-68700138 | Msa0517220:intron | 25.0% |
| ! | TCACCTAATAAACATATAGA+CGG | + | chr3_4:68700298-68700317 | None:intergenic | 25.0% |
| !! | ATTGGATATGCAAATTTTAG+AGG | - | chr3_4:68700541-68700560 | Msa0517220:intron | 25.0% |
| ! | ATAAATGAAGATTTGAAGGA+GGG | + | chr3_4:68700588-68700607 | None:intergenic | 25.0% |
| ! | TTGCATAAATGAAGATTTGA+AGG | + | chr3_4:68700592-68700611 | None:intergenic | 25.0% |
| ! | AGATTAACAAAGTATGTTGT+GGG | + | chr3_4:68700663-68700682 | None:intergenic | 25.0% |
| ! | TAAATTAATGCAACAGTCTT+CGG | - | chr3_4:68700698-68700717 | Msa0517220:intron | 25.0% |
| !! | AATTTGTTTAGTTGTATGCT+TGG | - | chr3_4:68700787-68700806 | Msa0517220:intron | 25.0% |
| ! | AAAGTTTCAAATGCTTATCA+AGG | - | chr3_4:68700932-68700951 | Msa0517220:intron | 25.0% |
| ! | AAGTTTCAAATGCTTATCAA+GGG | - | chr3_4:68700933-68700952 | Msa0517220:intron | 25.0% |
| ! | CAAGTAAAAACTATGAAGAT+TGG | + | chr3_4:68701026-68701045 | None:intergenic | 25.0% |
| !! | TCTTCATAGTTTTTACTTGT+TGG | - | chr3_4:68701027-68701046 | Msa0517220:intron | 25.0% |
| !!! | TTATAGAGGTTTTAGAAGTA+AGG | - | chr3_4:68701184-68701203 | Msa0517220:intron | 25.0% |
| ! | AAATGTTAAGAGTTTCACAA+TGG | + | chr3_4:68701571-68701590 | None:intergenic | 25.0% |
| !!! | AGTGGTTACATTAGTTTTTA+AGG | - | chr3_4:68701621-68701640 | Msa0517220:CDS | 25.0% |
| ! | GGATAATGTATACTTTCATA+AGG | - | chr3_4:68701807-68701826 | Msa0517220:intron | 25.0% |
| ! | GGATTCTTTATATGATTATG+TGG | - | chr3_4:68701828-68701847 | Msa0517220:intron | 25.0% |
| ! | AGCAGCATTAAATAACAAAA+GGG | + | chr3_4:68701917-68701936 | None:intergenic | 25.0% |
| ! | TAGCAGCATTAAATAACAAA+AGG | + | chr3_4:68701918-68701937 | None:intergenic | 25.0% |
| !!! | TTTTTCTCTAGTCTTTTTAC+CGG | - | chr3_4:68701973-68701992 | Msa0517220:CDS | 25.0% |
| ! | TAATCAATTGAGGCAATTTA+GGG | + | chr3_4:68702266-68702285 | None:intergenic | 25.0% |
| ! | ATAATCAATTGAGGCAATTT+AGG | + | chr3_4:68702267-68702286 | None:intergenic | 25.0% |
| ! | ACAATTCTGATAATCAATTG+AGG | + | chr3_4:68702276-68702295 | None:intergenic | 25.0% |
| !! | GTTGTCCACATAATTATTTT+AGG | - | chr3_4:68702294-68702313 | Msa0517220:intron | 25.0% |
| !!! | ATGCCAAATTTTAAGTGTAA+CGG | + | chr3_4:68702329-68702348 | None:intergenic | 25.0% |
| ! | AACCAATTTAATACAGATAG+GGG | + | chr3_4:68702629-68702648 | None:intergenic | 25.0% |
| ! | GGAAGATAATGTATCAATTA+TGG | - | chr3_4:68702651-68702670 | Msa0517220:intron | 25.0% |
| ! | GTCCAAATGTTTAGTAATAA+TGG | - | chr3_4:68703015-68703034 | Msa0517220:CDS | 25.0% |
| !!! | TCTTTTTCATTAAAACTGCA+AGG | - | chr3_4:68703141-68703160 | Msa0517220:CDS | 25.0% |
| ! | CATTAATCATTATCATCATG+AGG | + | chr3_4:68703216-68703235 | None:intergenic | 25.0% |
| ! | GTTTATCACAATTGTTATCA+TGG | + | chr3_4:68703279-68703298 | None:intergenic | 25.0% |
| AAAATCAAACCAGGAAAAAG+TGG | + | chr3_4:68697427-68697446 | None:intergenic | 30.0% | |
| AAATCATACATTCCATGTGA+CGG | + | chr3_4:68697518-68697537 | None:intergenic | 30.0% | |
| ! | TTCTTTTGTCCTTCAAATGT+TGG | - | chr3_4:68697555-68697574 | Msa0517220:CDS | 30.0% |
| AGCTTAGAGATTATCAAGTA+AGG | + | chr3_4:68697960-68697979 | None:intergenic | 30.0% | |
| TTAATTGCGTAGTGATTCTA+TGG | - | chr3_4:68698272-68698291 | Msa0517220:intron | 30.0% | |
| TTTCCTCTAAGTTTCTACTT+CGG | - | chr3_4:68698341-68698360 | Msa0517220:intron | 30.0% | |
| TAAAGGACTTGCATAGTTAT+GGG | + | chr3_4:68698623-68698642 | None:intergenic | 30.0% | |
| ! | TTTTTCGTCATCTTTTTGTG+AGG | + | chr3_4:68698697-68698716 | None:intergenic | 30.0% |
| GATGACGAAAAAAATTAGAG+AGG | - | chr3_4:68698705-68698724 | Msa0517220:intron | 30.0% | |
| ! | AATTCGATTTCTGTTTTGCA+GGG | - | chr3_4:68698731-68698750 | Msa0517220:intron | 30.0% |
| ! | GAACGCAATATTCATCATTT+TGG | - | chr3_4:68698892-68698911 | Msa0517220:intron | 30.0% |
| !!! | CATCATTTTGGTTAATGGTA+TGG | - | chr3_4:68698904-68698923 | Msa0517220:intron | 30.0% |
| ACTAAAGTATATCAAGGATG+TGG | - | chr3_4:68699073-68699092 | Msa0517220:intron | 30.0% | |
| GTTAGATAACCAACCAATAA+TGG | + | chr3_4:68699252-68699271 | None:intergenic | 30.0% | |
| !! | AGTTTTGATCCAAAATTTGC+GGG | - | chr3_4:68699460-68699479 | Msa0517220:intron | 30.0% |
| TAAATGCAAACAGGCAAATT+TGG | + | chr3_4:68699556-68699575 | None:intergenic | 30.0% | |
| AAAACTGCTTAAATGCAAAC+AGG | + | chr3_4:68699565-68699584 | None:intergenic | 30.0% | |
| ACACACAAAAATAATACACC+AGG | + | chr3_4:68699729-68699748 | None:intergenic | 30.0% | |
| !! | TTGCTGATTTACTGCAAAAA+TGG | - | chr3_4:68699900-68699919 | Msa0517220:intron | 30.0% |
| !!! | GTACCGATTTTTCTTTTACA+TGG | - | chr3_4:68700112-68700131 | Msa0517220:intron | 30.0% |
| ATATAGACGGGTAAAGAAAA+TGG | + | chr3_4:68700285-68700304 | None:intergenic | 30.0% | |
| TACCCGTCTATATGTTTATT+AGG | - | chr3_4:68700292-68700311 | Msa0517220:intron | 30.0% | |
| CACCTAATAAACATATAGAC+GGG | + | chr3_4:68700297-68700316 | None:intergenic | 30.0% | |
| !! | GTCTTCTGATAATGCTTTTA+AGG | + | chr3_4:68700336-68700355 | None:intergenic | 30.0% |
| TCAGAAGACGAAATTCTTTA+TGG | - | chr3_4:68700347-68700366 | Msa0517220:CDS | 30.0% | |
| CATAAATGAAGATTTGAAGG+AGG | + | chr3_4:68700589-68700608 | None:intergenic | 30.0% | |
| CAGATTAACAAAGTATGTTG+TGG | + | chr3_4:68700664-68700683 | None:intergenic | 30.0% | |
| TCGGTTATAGTAAAAAGATG+TGG | - | chr3_4:68700717-68700736 | Msa0517220:intron | 30.0% | |
| ! | TAGAACAGCATTTTTATGGA+TGG | - | chr3_4:68700826-68700845 | Msa0517220:intron | 30.0% |
| AAGCTTTCAGAAAAAAGATG+AGG | + | chr3_4:68700909-68700928 | None:intergenic | 30.0% | |
| !! | TTTTGTGGATGCTACTTATT+TGG | - | chr3_4:68700986-68701005 | Msa0517220:intron | 30.0% |
| GACACAATTAAATGCAAACA+AGG | + | chr3_4:68701231-68701250 | None:intergenic | 30.0% | |
| TGCAAATGTTTATAAGTGGT+GGG | + | chr3_4:68701318-68701337 | None:intergenic | 30.0% | |
| !! | CAAGTCGATTTTGTAAGAAT+GGG | + | chr3_4:68701496-68701515 | None:intergenic | 30.0% |
| !! | ACAAGTCGATTTTGTAAGAA+TGG | + | chr3_4:68701497-68701516 | None:intergenic | 30.0% |
| GTATTACTGTTTGTAAACAG+TGG | - | chr3_4:68701603-68701622 | Msa0517220:intron | 30.0% | |
| !! | TTGCTTTTACATTGCTTTGT+TGG | - | chr3_4:68701719-68701738 | Msa0517220:CDS | 30.0% |
| !!! | CTTTTATTTTCTCAAGTGCT+TGG | - | chr3_4:68701753-68701772 | Msa0517220:CDS | 30.0% |
| ! | CTTTCATTTTCTTAAGTGCT+TGG | - | chr3_4:68701786-68701805 | Msa0517220:intron | 30.0% |
| AGCATTAAATAACAAAAGGG+AGG | + | chr3_4:68701914-68701933 | None:intergenic | 30.0% | |
| ! | TAAGTTGAGTATCTAAATGC+AGG | - | chr3_4:68702002-68702021 | Msa0517220:intron | 30.0% |
| AATCAATTGAGGCAATTTAG+GGG | + | chr3_4:68702265-68702284 | None:intergenic | 30.0% | |
| TCTCCGTTACACTTAAAATT+TGG | - | chr3_4:68702323-68702342 | Msa0517220:intron | 30.0% | |
| ! | ATATTTGCTAGATATTGCAG+TGG | - | chr3_4:68702349-68702368 | Msa0517220:intron | 30.0% |
| CAAGTCTAATAAATAGTCTG+AGG | + | chr3_4:68702466-68702485 | None:intergenic | 30.0% | |
| ! | AAGTGTTGCATTGTTAAATG+TGG | - | chr3_4:68702548-68702567 | Msa0517220:intron | 30.0% |
| AAATGTGGCTAATAATTGTG+TGG | - | chr3_4:68702563-68702582 | Msa0517220:intron | 30.0% | |
| ACCAATTTAATACAGATAGG+GGG | + | chr3_4:68702628-68702647 | None:intergenic | 30.0% | |
| !! | AAATCACATTTCTGGTCATT+AGG | + | chr3_4:68702725-68702744 | None:intergenic | 30.0% |
| !!! | TAGACTCAGTTTTGAAGTTT+GGG | + | chr3_4:68702749-68702768 | None:intergenic | 30.0% |
| !!! | ATAGACTCAGTTTTGAAGTT+TGG | + | chr3_4:68702750-68702769 | None:intergenic | 30.0% |
| AAACTTCAAAACTGAGTCTA+TGG | - | chr3_4:68702749-68702768 | Msa0517220:intron | 30.0% | |
| !! | ATTTACCAATTTGTTTTCCC+AGG | - | chr3_4:68702853-68702872 | Msa0517220:intron | 30.0% |
| ! | TTTTCATTAAAACTGCAAGG+AGG | - | chr3_4:68703144-68703163 | Msa0517220:CDS | 30.0% |
| AGAAGAAGAAGAAGAAGAAG+AGG | + | chr3_4:68697292-68697311 | None:intergenic | 35.0% | |
| CTTCTTCTTCTTCATCATCA+CGG | - | chr3_4:68697301-68697320 | Msa0517220:three_prime_UTR | 35.0% | |
| ACATCAGTTAAAGGGACTAA+CGG | + | chr3_4:68697378-68697397 | None:intergenic | 35.0% | |
| AATCTGCTGAAAATCAAACC+AGG | + | chr3_4:68697436-68697455 | None:intergenic | 35.0% | |
| ! | TTTTCAGCAGATTGCTAAGA+TGG | - | chr3_4:68697443-68697462 | Msa0517220:three_prime_UTR | 35.0% |
| ATCAACAACAAGAGCGAAAA+AGG | + | chr3_4:68697483-68697502 | None:intergenic | 35.0% | |
| TTGTCCTTCAAATGTTGGAT+TGG | - | chr3_4:68697560-68697579 | Msa0517220:CDS | 35.0% | |
| CAATCCAATCCAACATTTGA+AGG | + | chr3_4:68697567-68697586 | None:intergenic | 35.0% | |
| ! | TCAAATGTTGGATTGGATTG+TGG | - | chr3_4:68697567-68697586 | Msa0517220:CDS | 35.0% |
| TGTGAGCAACAAAATGAAGT+TGG | + | chr3_4:68697649-68697668 | None:intergenic | 35.0% | |
| !! | CACCGTTACTTTGAGATATT+GGG | - | chr3_4:68697672-68697691 | Msa0517220:intron | 35.0% |
| TGCCCAATATCTCAAAGTAA+CGG | + | chr3_4:68697677-68697696 | None:intergenic | 35.0% | |
| ! | TTTGAGATATTGGGCATGTT+TGG | - | chr3_4:68697681-68697700 | Msa0517220:intron | 35.0% |
| TCAAATAAGCCAATCCAAAC+AGG | - | chr3_4:68697899-68697918 | Msa0517220:intron | 35.0% | |
| ! | CTAAACTAGCTCTCCAAAAT+TGG | + | chr3_4:68698071-68698090 | None:intergenic | 35.0% |
| GTAGTGATTCTATGGTCTAA+GGG | - | chr3_4:68698280-68698299 | Msa0517220:intron | 35.0% | |
| ATAGGGTTTGAGTGATAAAG+AGG | + | chr3_4:68698452-68698471 | None:intergenic | 35.0% | |
| ! | GGATTCGAAGGTATAACATA+GGG | + | chr3_4:68698469-68698488 | None:intergenic | 35.0% |
| ! | TGGATTCGAAGGTATAACAT+AGG | + | chr3_4:68698470-68698489 | None:intergenic | 35.0% |
| !! | AATTGATGGATTGGATTCGA+AGG | + | chr3_4:68698481-68698500 | None:intergenic | 35.0% |
| GCAGATTTCTTTGTCACAAT+TGG | - | chr3_4:68698531-68698550 | Msa0517220:intron | 35.0% | |
| CTAAAGGACTTGCATAGTTA+TGG | + | chr3_4:68698624-68698643 | None:intergenic | 35.0% | |
| ! | CAATTCGATTTCTGTTTTGC+AGG | - | chr3_4:68698730-68698749 | Msa0517220:intron | 35.0% |
| CTATGCATTTACGAGTGTTA+TGG | - | chr3_4:68698809-68698828 | Msa0517220:intron | 35.0% | |
| !! | TGATGATGTTTTATTCCCTC+TGG | - | chr3_4:68698835-68698854 | Msa0517220:intron | 35.0% |
| ! | CAAAAGCAACACCATCTTTT+GGG | - | chr3_4:68698870-68698889 | Msa0517220:intron | 35.0% |
| AATATTGCGTTCCCAAAAGA+TGG | + | chr3_4:68698884-68698903 | None:intergenic | 35.0% | |
| AAGTATATCAAGGATGTGGA+AGG | - | chr3_4:68699077-68699096 | Msa0517220:intron | 35.0% | |
| TTAACAGTTCTTTGCCAATG+CGG | - | chr3_4:68699175-68699194 | Msa0517220:intron | 35.0% | |
| AAATAATACACCAGGACACT+GGG | + | chr3_4:68699721-68699740 | None:intergenic | 35.0% | |
| AAAATAATACACCAGGACAC+TGG | + | chr3_4:68699722-68699741 | None:intergenic | 35.0% | |
| GTGTTGTCTATTCTCGATAT+TGG | - | chr3_4:68699745-68699764 | Msa0517220:intron | 35.0% | |
| ! | TCTCGATATTGGTGTTTCTA+TGG | - | chr3_4:68699756-68699775 | Msa0517220:intron | 35.0% |
| TTGTGGTGAGAAACAATTAC+TGG | - | chr3_4:68699800-68699819 | Msa0517220:intron | 35.0% | |
| ! | CAATTACTGGTTAGTATCCA+TGG | - | chr3_4:68699813-68699832 | Msa0517220:intron | 35.0% |
| TCCATGGTCACAATATTCAT+TGG | - | chr3_4:68699829-68699848 | Msa0517220:intron | 35.0% | |
| !! | TCATTGGCTTTCAGATACAA+TGG | - | chr3_4:68699845-68699864 | Msa0517220:intron | 35.0% |
| AAGAAAAATCGGTACCAAAC+TGG | + | chr3_4:68700107-68700126 | None:intergenic | 35.0% | |
| CTCTTCTCATCAATTATCAC+AGG | - | chr3_4:68700146-68700165 | Msa0517220:CDS | 35.0% | |
| TGTTTATGCTACATCAGAAC+AGG | - | chr3_4:68700370-68700389 | Msa0517220:CDS | 35.0% | |
| CATGATGACACAATGCATTA+TGG | + | chr3_4:68700761-68700780 | None:intergenic | 35.0% | |
| ! | AGCATTTTTATGGATGGTGT+GGG | - | chr3_4:68700832-68700851 | Msa0517220:intron | 35.0% |
| ! | GGATGCTACTTATTTGGTTA+CGG | - | chr3_4:68700992-68701011 | Msa0517220:intron | 35.0% |
| AAAACCTCTATAAGCTGACT+CGG | + | chr3_4:68701177-68701196 | None:intergenic | 35.0% | |
| !!! | TAGAGGTTTTAGAAGTAAGG+AGG | - | chr3_4:68701187-68701206 | Msa0517220:intron | 35.0% |
| !!! | AGAGGTTTTAGAAGTAAGGA+GGG | - | chr3_4:68701188-68701207 | Msa0517220:intron | 35.0% |
| AATTCAAGCCCTTACAAAAC+CGG | - | chr3_4:68701272-68701291 | Msa0517220:intron | 35.0% | |
| CTGCAAATGTTTATAAGTGG+TGG | + | chr3_4:68701319-68701338 | None:intergenic | 35.0% | |
| CACCACTTATAAACATTTGC+AGG | - | chr3_4:68701317-68701336 | Msa0517220:intron | 35.0% | |
| GACCTGCAAATGTTTATAAG+TGG | + | chr3_4:68701322-68701341 | None:intergenic | 35.0% | |
| TGTGATGCCATCTTAGAATT+TGG | - | chr3_4:68701459-68701478 | Msa0517220:intron | 35.0% | |
| GTGATGCCATCTTAGAATTT+GGG | - | chr3_4:68701460-68701479 | Msa0517220:intron | 35.0% | |
| !! | CGATTTTGTAAGAATGGGTT+AGG | + | chr3_4:68701491-68701510 | None:intergenic | 35.0% |
| ! | ATGCTTGAATGGTTAGTTGA+GGG | + | chr3_4:68701682-68701701 | None:intergenic | 35.0% |
| ! | TACATTGCTTTGTTGGATTG+TGG | - | chr3_4:68701726-68701745 | Msa0517220:CDS | 35.0% |
| ATATGATTATGTGGAAGAGC+TGG | - | chr3_4:68701837-68701856 | Msa0517220:intron | 35.0% | |
| ! | AGCATGAGAATAGGGTATTA+GGG | - | chr3_4:68702586-68702605 | Msa0517220:intron | 35.0% |
| ATAAATAGCACTCTCTGCTT+TGG | - | chr3_4:68702698-68702717 | Msa0517220:intron | 35.0% | |
| !!! | AGACTCAGTTTTGAAGTTTG+GGG | + | chr3_4:68702748-68702767 | None:intergenic | 35.0% |
| TCAAACCTGGGAAAACAAAT+TGG | + | chr3_4:68702861-68702880 | None:intergenic | 35.0% | |
| ! | GAATGTGATGTTCTCTGAAG+AGG | - | chr3_4:68697323-68697342 | Msa0517220:three_prime_UTR | 40.0% |
| GTCCCTTTAACTGATGTTGT+CGG | - | chr3_4:68697381-68697400 | Msa0517220:three_prime_UTR | 40.0% | |
| CACCGACAACATCAGTTAAA+GGG | + | chr3_4:68697386-68697405 | None:intergenic | 40.0% | |
| !! | GCACCGTTACTTTGAGATAT+TGG | - | chr3_4:68697671-68697690 | Msa0517220:intron | 40.0% |
| !! | ATTAACATGATGGGCCTGTT+TGG | + | chr3_4:68697916-68697935 | None:intergenic | 40.0% |
| ! | ACACGGAGCATTAACATGAT+GGG | + | chr3_4:68697925-68697944 | None:intergenic | 40.0% |
| ! | AACACGGAGCATTAACATGA+TGG | + | chr3_4:68697926-68697945 | None:intergenic | 40.0% |
| TCTAAGCTTTACTCCCACTT+GGG | - | chr3_4:68697972-68697991 | Msa0517220:intron | 40.0% | |
| CTTCTTCACTGAGTAAAGCT+TGG | + | chr3_4:68698125-68698144 | None:intergenic | 40.0% | |
| CGTAGTGATTCTATGGTCTA+AGG | - | chr3_4:68698279-68698298 | Msa0517220:intron | 40.0% | |
| GTGTATCAGCTGTAATGTTC+AGG | - | chr3_4:68698553-68698572 | Msa0517220:intron | 40.0% | |
| ! | CATCTTTTTGTGAGGAGGAT+GGG | + | chr3_4:68698689-68698708 | None:intergenic | 40.0% |
| ! | TCATCTTTTTGTGAGGAGGA+TGG | + | chr3_4:68698690-68698709 | None:intergenic | 40.0% |
| ! | TTCGTCATCTTTTTGTGAGG+AGG | + | chr3_4:68698694-68698713 | None:intergenic | 40.0% |
| AAAAGAGAGAGCAAGAAGAG+CGG | + | chr3_4:68698771-68698790 | None:intergenic | 40.0% | |
| !!! | AAAGATGGTGTTGCTTTTGG+CGG | + | chr3_4:68698869-68698888 | None:intergenic | 40.0% |
| !!! | CCAAAAGATGGTGTTGCTTT+TGG | + | chr3_4:68698872-68698891 | None:intergenic | 40.0% |
| ! | CCAAAAGCAACACCATCTTT+TGG | - | chr3_4:68698869-68698888 | Msa0517220:intron | 40.0% |
| TAACAGTTCTTTGCCAATGC+GGG | - | chr3_4:68699176-68699195 | Msa0517220:intron | 40.0% | |
| ! | AATGCAAGACCCGCAAATTT+TGG | + | chr3_4:68699472-68699491 | None:intergenic | 40.0% |
| ! | CTTAGCTGCTGCAATGTTTT+AGG | - | chr3_4:68699627-68699646 | Msa0517220:intron | 40.0% |
| AATAATACACCAGGACACTG+GGG | + | chr3_4:68699720-68699739 | None:intergenic | 40.0% | |
| GCCAATGAATATTGTGACCA+TGG | + | chr3_4:68699833-68699852 | None:intergenic | 40.0% | |
| ! | CAGGCTTTTTGTGAAAAGCA+AGG | + | chr3_4:68699965-68699984 | None:intergenic | 40.0% |
| CAAGGGTCAAATCTTAACTC+TGG | - | chr3_4:68700040-68700059 | Msa0517220:intron | 40.0% | |
| GTTAACATCTGCAGTTGAGA+AGG | - | chr3_4:68700187-68700206 | Msa0517220:CDS | 40.0% | |
| AAAGTATGTTGTGGGCAAAG+AGG | + | chr3_4:68700655-68700674 | None:intergenic | 40.0% | |
| ! | CAGCATTTTTATGGATGGTG+TGG | - | chr3_4:68700831-68700850 | Msa0517220:intron | 40.0% |
| ! | GCATTTTTATGGATGGTGTG+GGG | - | chr3_4:68700833-68700852 | Msa0517220:intron | 40.0% |
| TCAAATGCTTATCAAGGGAC+AGG | - | chr3_4:68700938-68700957 | Msa0517220:intron | 40.0% | |
| CAAATGCTTATCAAGGGACA+GGG | - | chr3_4:68700939-68700958 | Msa0517220:intron | 40.0% | |
| ! | CCAAATTTGAAGCAAGAGTC+AGG | + | chr3_4:68701143-68701162 | None:intergenic | 40.0% |
| CCTGACTCTTGCTTCAAATT+TGG | - | chr3_4:68701140-68701159 | Msa0517220:intron | 40.0% | |
| !! | CTTACAAGCCGGTTTTGTAA+GGG | + | chr3_4:68701283-68701302 | None:intergenic | 40.0% |
| AGTTTCATCACCTTACAAGC+CGG | + | chr3_4:68701294-68701313 | None:intergenic | 40.0% | |
| TGTGTTAAGTGTCCCACATT+GGG | + | chr3_4:68701353-68701372 | None:intergenic | 40.0% | |
| TTAACACACTTACTGACACC+TGG | - | chr3_4:68701365-68701384 | Msa0517220:intron | 40.0% | |
| TAACACACTTACTGACACCT+GGG | - | chr3_4:68701366-68701385 | Msa0517220:intron | 40.0% | |
| TGCCATCTTAGAATTTGGGA+TGG | - | chr3_4:68701464-68701483 | Msa0517220:intron | 40.0% | |
| ! | GCCATCTTAGAATTTGGGAT+GGG | - | chr3_4:68701465-68701484 | Msa0517220:intron | 40.0% |
| GGTTTGAACGACTTCCTAAT+TGG | - | chr3_4:68701642-68701661 | Msa0517220:CDS | 40.0% | |
| AGGTTGAAGGAGTTCCAATT+AGG | + | chr3_4:68701659-68701678 | None:intergenic | 40.0% | |
| ! | GATGCTTGAATGGTTAGTTG+AGG | + | chr3_4:68701683-68701702 | None:intergenic | 40.0% |
| AACCATTCAAGCATCCTACT+TGG | - | chr3_4:68701688-68701707 | Msa0517220:CDS | 40.0% | |
| ACCATTCAAGCATCCTACTT+GGG | - | chr3_4:68701689-68701708 | Msa0517220:CDS | 40.0% | |
| !! | ACGTCTTTGAAACATCGACA+CGG | - | chr3_4:68701860-68701879 | Msa0517220:intron | 40.0% |
| GATACTCAACTTAGAACTGC+CGG | + | chr3_4:68701995-68702014 | None:intergenic | 40.0% | |
| TAGGAACATGCATCTTCTCT+TGG | + | chr3_4:68702059-68702078 | None:intergenic | 40.0% | |
| TGAGGATGCATAACAAGCAA+GGG | + | chr3_4:68702448-68702467 | None:intergenic | 40.0% | |
| ATCGGAAACTATCAAGAAGC+AGG | + | chr3_4:68702492-68702511 | None:intergenic | 40.0% | |
| ATTGTGTGGAGCATGAGAAT+AGG | - | chr3_4:68702577-68702596 | Msa0517220:intron | 40.0% | |
| TTGTGTGGAGCATGAGAATA+GGG | - | chr3_4:68702578-68702597 | Msa0517220:intron | 40.0% | |
| ! | GAGCATGAGAATAGGGTATT+AGG | - | chr3_4:68702585-68702604 | Msa0517220:intron | 40.0% |
| ! | TGAGAATAGGGTATTAGGGA+AGG | - | chr3_4:68702590-68702609 | Msa0517220:intron | 40.0% |
| GCCCCCTATCTGTATTAAAT+TGG | - | chr3_4:68702624-68702643 | Msa0517220:intron | 40.0% | |
| GTTTGGGGAAATCACATTTC+TGG | + | chr3_4:68702733-68702752 | None:intergenic | 40.0% | |
| TCAAAACTGAGTCTATGGCA+TGG | - | chr3_4:68702754-68702773 | Msa0517220:intron | 40.0% | |
| GTACATTCTCTCTCAAACCT+GGG | + | chr3_4:68702873-68702892 | None:intergenic | 40.0% | |
| AGTACATTCTCTCTCAAACC+TGG | + | chr3_4:68702874-68702893 | None:intergenic | 40.0% | |
| ! | ACTTGTTGATCCATCTCCAA+AGG | + | chr3_4:68702940-68702959 | None:intergenic | 40.0% |
| CCACCGACAACATCAGTTAA+AGG | + | chr3_4:68697387-68697406 | None:intergenic | 45.0% | |
| CCTTTAACTGATGTTGTCGG+TGG | - | chr3_4:68697384-68697403 | Msa0517220:three_prime_UTR | 45.0% | |
| !!! | ACAGCTTCTCCACTTTTTCC+TGG | - | chr3_4:68697415-68697434 | Msa0517220:three_prime_UTR | 45.0% |
| !!! | TGTTTTGATACGCCGTCACA+TGG | - | chr3_4:68697503-68697522 | Msa0517220:three_prime_UTR | 45.0% |
| CTCTAAGCTTTACTCCCACT+TGG | - | chr3_4:68697971-68697990 | Msa0517220:intron | 45.0% | |
| ATCAAACCTGAGACCTTGAG+AGG | + | chr3_4:68698037-68698056 | None:intergenic | 45.0% | |
| ! | ATTCTCCCGGATGCCAATTT+TGG | - | chr3_4:68698055-68698074 | Msa0517220:intron | 45.0% |
| AGCTCTCCAAAATTGGCATC+CGG | + | chr3_4:68698064-68698083 | None:intergenic | 45.0% | |
| GTCTTCATCCCTCCTTGATA+AGG | - | chr3_4:68698203-68698222 | Msa0517220:intron | 45.0% | |
| GATTCTATGGTCTAAGGGCA+TGG | - | chr3_4:68698285-68698304 | Msa0517220:intron | 45.0% | |
| CAGCCGAAGTAGAAACTTAG+AGG | + | chr3_4:68698347-68698366 | None:intergenic | 45.0% | |
| CAAGAAACATACTGCGCTGA+AGG | - | chr3_4:68698590-68698609 | Msa0517220:intron | 45.0% | |
| !!! | TGTTGCTTTTGGCGGAAACA+TGG | + | chr3_4:68698861-68698880 | None:intergenic | 45.0% |
| ACTTGGTCAACCTTCTTCTC+CGG | - | chr3_4:68699206-68699225 | Msa0517220:intron | 45.0% | |
| ATGCAATTGTCCGGAGAAGA+AGG | + | chr3_4:68699219-68699238 | None:intergenic | 45.0% | |
| TCCGGACAATTGCATCACTT+GGG | - | chr3_4:68699224-68699243 | Msa0517220:intron | 45.0% | |
| CATCACTTGGGGTCCATTAT+TGG | - | chr3_4:68699236-68699255 | Msa0517220:intron | 45.0% | |
| ACTTGGGGTCCATTATTGGT+TGG | - | chr3_4:68699240-68699259 | Msa0517220:intron | 45.0% | |
| GTTACTCTTGTATGCCATGC+AGG | - | chr3_4:68699387-68699406 | Msa0517220:intron | 45.0% | |
| TGCCATGCAGGAAACAATGA+CGG | - | chr3_4:68699399-68699418 | Msa0517220:intron | 45.0% | |
| TTCCGTCATTGTTTCCTGCA+TGG | + | chr3_4:68699404-68699423 | None:intergenic | 45.0% | |
| GGCTTTCAGATACAATGGTG+CGG | - | chr3_4:68699850-68699869 | Msa0517220:intron | 45.0% | |
| TAACCTGTCGACGGAAGTTA+TGG | + | chr3_4:68699932-68699951 | None:intergenic | 45.0% | |
| ATAACTTCCGTCGACAGGTT+AGG | - | chr3_4:68699931-68699950 | Msa0517220:intron | 45.0% | |
| AACTACTCCTAACCTGTCGA+CGG | + | chr3_4:68699941-68699960 | None:intergenic | 45.0% | |
| AAGATTTGAAGGAGGGACAC+AGG | + | chr3_4:68700581-68700600 | None:intergenic | 45.0% | |
| GTAAGGAGGGAAGATCTTTG+TGG | - | chr3_4:68701201-68701220 | Msa0517220:intron | 45.0% | |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | + | chr3_4:68701284-68701303 | None:intergenic | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+AGG | - | chr3_4:68701281-68701300 | Msa0517220:intron | 45.0% |
| AGGTCATATCTCACCCAATG+TGG | - | chr3_4:68701337-68701356 | Msa0517220:intron | 45.0% | |
| GGTCATATCTCACCCAATGT+GGG | - | chr3_4:68701338-68701357 | Msa0517220:intron | 45.0% | |
| GTGTGTTAAGTGTCCCACAT+TGG | + | chr3_4:68701354-68701373 | None:intergenic | 45.0% | |
| CAGCCTATCCAAGATCTGTT+GGG | + | chr3_4:68701441-68701460 | None:intergenic | 45.0% | |
| ACAGCCTATCCAAGATCTGT+TGG | + | chr3_4:68701442-68701461 | None:intergenic | 45.0% | |
| ! | GCCCATCCCAAATTCTAAGA+TGG | + | chr3_4:68701469-68701488 | None:intergenic | 45.0% |
| ! | CTTGAATGGTTAGTTGAGGG+AGG | + | chr3_4:68701679-68701698 | None:intergenic | 45.0% |
| TCCCAAGTAGGATGCTTGAA+TGG | + | chr3_4:68701693-68701712 | None:intergenic | 45.0% | |
| AAGCAAGAACTGTCCCAAGT+AGG | + | chr3_4:68701705-68701724 | None:intergenic | 45.0% | |
| GAAGATGCATGTTCCTATCC+TGG | - | chr3_4:68702062-68702081 | Msa0517220:intron | 45.0% | |
| CTGAGGATGCATAACAAGCA+AGG | + | chr3_4:68702449-68702468 | None:intergenic | 45.0% | |
| ! | GAATAGGGTATTAGGGAAGG+AGG | - | chr3_4:68702593-68702612 | Msa0517220:intron | 45.0% |
| ! | ATTAGGGAAGGAGGTATGCA+TGG | - | chr3_4:68702602-68702621 | Msa0517220:intron | 45.0% |
| TGAGAGAGAATGTACTTGCC+CGG | - | chr3_4:68702878-68702897 | Msa0517220:intron | 45.0% | |
| !! | AAAAAATAAAAATAAGTTTA+TGG | - | chr3_4:68703070-68703089 | Msa0517220:intron | 5.0% |
| ! | AGCTGCTGCTTCTCAACAAG+AGG | - | chr3_4:68697257-68697276 | Msa0517220:three_prime_UTR | 50.0% |
| !! | CATGATGGGCCTGTTTGGAT+TGG | + | chr3_4:68697911-68697930 | None:intergenic | 50.0% |
| AGCTTTACTCCCACTTGGGT+TGG | - | chr3_4:68697976-68697995 | Msa0517220:intron | 50.0% | |
| GGTCTCAGGTTTGATTCTCC+CGG | - | chr3_4:68698042-68698061 | Msa0517220:intron | 50.0% | |
| GCTCTCCAAAATTGGCATCC+GGG | + | chr3_4:68698063-68698082 | None:intergenic | 50.0% | |
| AGTTCTTTGCCAATGCGGGT+TGG | - | chr3_4:68699180-68699199 | Msa0517220:intron | 50.0% | |
| CTCCGGACAATTGCATCACT+TGG | - | chr3_4:68699223-68699242 | Msa0517220:intron | 50.0% | |
| CCCCAAGTGATGCAATTGTC+CGG | + | chr3_4:68699228-68699247 | None:intergenic | 50.0% | |
| CCGGACAATTGCATCACTTG+GGG | - | chr3_4:68699225-68699244 | Msa0517220:intron | 50.0% | |
| GCTATTGTGTGCGCTGTTGA+TGG | - | chr3_4:68699330-68699349 | Msa0517220:intron | 50.0% | |
| AGATACAATGGTGCGGCAAG+TGG | - | chr3_4:68699857-68699876 | Msa0517220:intron | 50.0% | |
| CTTTCTTGCCAGCACCAGTT+TGG | - | chr3_4:68700090-68700109 | Msa0517220:intron | 50.0% | |
| AATCGGTACCAAACTGGTGC+TGG | + | chr3_4:68700101-68700120 | None:intergenic | 50.0% | |
| TTTATGGATGGTGTGGGGAC+TGG | - | chr3_4:68700838-68700857 | Msa0517220:intron | 50.0% | |
| TTATGGATGGTGTGGGGACT+GGG | - | chr3_4:68700839-68700858 | Msa0517220:intron | 50.0% | |
| TCAAGGGACAGGGAAACGTA+AGG | - | chr3_4:68700949-68700968 | Msa0517220:intron | 50.0% | |
| TCTGCCGAGTCAGCTTATAG+AGG | - | chr3_4:68701170-68701189 | Msa0517220:intron | 50.0% | |
| ACTTACTGACACCTGGGACT+GGG | - | chr3_4:68701372-68701391 | Msa0517220:intron | 50.0% | |
| AGCGATGACCTGATAGCATG+TGG | - | chr3_4:68701415-68701434 | Msa0517220:intron | 50.0% | |
| TGGCCCAACAGATCTTGGAT+AGG | - | chr3_4:68701435-68701454 | Msa0517220:intron | 50.0% | |
| ! | GGTTAGTTGAGGGAGGTTGA+AGG | + | chr3_4:68701672-68701691 | None:intergenic | 50.0% |
| TAAATGCAGGTACGTGCTGC+TGG | - | chr3_4:68702015-68702034 | Msa0517220:intron | 50.0% | |
| ! | GCGAGGAGTGTGTATCTGAA+TGG | - | chr3_4:68702106-68702125 | Msa0517220:intron | 50.0% |
| GGTTGGACGCCTTCAGTATA+GGG | - | chr3_4:68702234-68702253 | Msa0517220:intron | 50.0% | |
| GGGGATATGCCCTATACTGA+AGG | + | chr3_4:68702246-68702265 | None:intergenic | 50.0% | |
| ACTACCAATGTCCTGCACAC+CGG | + | chr3_4:68702900-68702919 | None:intergenic | 50.0% | |
| TGGTAGTACCTGCTCATCTG+CGG | - | chr3_4:68702913-68702932 | Msa0517220:intron | 50.0% | |
| TGATTCCTCGCACGTGGCAA+CGG | - | chr3_4:68697229-68697248 | Msa0517220:three_prime_UTR | 55.0% | |
| GCTGCTTCTCAACAAGAGGC+TGG | - | chr3_4:68697261-68697280 | Msa0517220:three_prime_UTR | 55.0% | |
| ! | AGAGGCTCACCGTGCTATTG+CGG | - | chr3_4:68697341-68697360 | Msa0517220:three_prime_UTR | 55.0% |
| GCGTTTGTGTAAGCTCGCAC+AGG | - | chr3_4:68697751-68697770 | Msa0517220:intron | 55.0% | |
| !! | TTGGGTTGGCCTGGTGGTAT+TGG | - | chr3_4:68697990-68698009 | Msa0517220:intron | 55.0% |
| !! | TTGGCCTGGTGGTATTGGCT+TGG | - | chr3_4:68697995-68698014 | Msa0517220:intron | 55.0% |
| !! | TGGCCTGGTGGTATTGGCTT+GGG | - | chr3_4:68697996-68698015 | Msa0517220:intron | 55.0% |
| !! | GTGGTATTGGCTTGGGACCT+TGG | - | chr3_4:68698003-68698022 | Msa0517220:intron | 55.0% |
| ! | CTTGAGAGGAGCACACTCCA+AGG | + | chr3_4:68698023-68698042 | None:intergenic | 55.0% |
| CTTGGAGTGTGCTCCTCTCA+AGG | - | chr3_4:68698021-68698040 | Msa0517220:intron | 55.0% | |
| TGTGCTCCTCTCAAGGTCTC+AGG | - | chr3_4:68698028-68698047 | Msa0517220:intron | 55.0% | |
| TTGGCGGAAACATGGCCAGA+GGG | + | chr3_4:68698853-68698872 | None:intergenic | 55.0% | |
| TTTGGCGGAAACATGGCCAG+AGG | + | chr3_4:68698854-68698873 | None:intergenic | 55.0% | |
| CCAAGTAAGCCAACCCGCAT+TGG | + | chr3_4:68699192-68699211 | None:intergenic | 55.0% | |
| !! | CCAATGCGGGTTGGCTTACT+TGG | - | chr3_4:68699189-68699208 | Msa0517220:intron | 55.0% |
| TACACCAGGACACTGGGGAT+GGG | + | chr3_4:68699715-68699734 | None:intergenic | 55.0% | |
| ATACACCAGGACACTGGGGA+TGG | + | chr3_4:68699716-68699735 | None:intergenic | 55.0% | |
| AATGGTGCGGCAAGTGGCAA+TGG | - | chr3_4:68699863-68699882 | Msa0517220:intron | 55.0% | |
| ACGCCATAACTTCCGTCGAC+AGG | - | chr3_4:68699926-68699945 | Msa0517220:intron | 55.0% | |
| CACTTACTGACACCTGGGAC+TGG | - | chr3_4:68701371-68701390 | Msa0517220:intron | 55.0% | |
| CTGTTGGGCCACATGCTATC+AGG | + | chr3_4:68701426-68701445 | None:intergenic | 55.0% | |
| GCATGTGGCCCAACAGATCT+TGG | - | chr3_4:68701430-68701449 | Msa0517220:intron | 55.0% | |
| ! | GTTCCTATCCTGGTTCGCTG+TGG | - | chr3_4:68702072-68702091 | Msa0517220:intron | 55.0% |
| TGTCCACAGCGAACCAGGAT+AGG | + | chr3_4:68702078-68702097 | None:intergenic | 55.0% | |
| ACATGTGTCCACAGCGAACC+AGG | + | chr3_4:68702083-68702102 | None:intergenic | 55.0% | |
| CTGTGGACACATGTTCTGCG+AGG | - | chr3_4:68702089-68702108 | Msa0517220:intron | 55.0% | |
| GGGTTGGACGCCTTCAGTAT+AGG | - | chr3_4:68702233-68702252 | Msa0517220:intron | 55.0% | |
| AATGTACTTGCCCGGTGTGC+AGG | - | chr3_4:68702886-68702905 | Msa0517220:intron | 55.0% | |
| CTACCAATGTCCTGCACACC+GGG | + | chr3_4:68702899-68702918 | None:intergenic | 55.0% | |
| ! | CATCTGCGGACCTTTGGAGA+TGG | - | chr3_4:68702927-68702946 | Msa0517220:intron | 55.0% |
| CTCTGTCCGCCGCAATAGCA+CGG | + | chr3_4:68697353-68697372 | None:intergenic | 60.0% | |
| !! | TACTCCCACTTGGGTTGGCC+TGG | - | chr3_4:68697981-68698000 | Msa0517220:intron | 60.0% |
| ACCACCAGGCCAACCCAAGT+GGG | + | chr3_4:68697988-68698007 | None:intergenic | 60.0% | |
| TACCACCAGGCCAACCCAAG+TGG | + | chr3_4:68697989-68698008 | None:intergenic | 60.0% | |
| GGTCCCAAGCCAATACCACC+AGG | + | chr3_4:68698002-68698021 | None:intergenic | 60.0% | |
| TCTTCCCATCCCCAGTGTCC+TGG | - | chr3_4:68699708-68699727 | Msa0517220:intron | 60.0% | |
| GATGGTGTGGGGACTGGGAA+GGG | - | chr3_4:68700844-68700863 | Msa0517220:intron | 60.0% | |
| TTGCCCGGTGTGCAGGACAT+TGG | - | chr3_4:68702893-68702912 | Msa0517220:intron | 60.0% | |
| CCAAAGGTCCGCAGATGAGC+AGG | + | chr3_4:68702924-68702943 | None:intergenic | 60.0% | |
| CCTGCTCATCTGCGGACCTT+TGG | - | chr3_4:68702921-68702940 | Msa0517220:intron | 60.0% | |
| CGAAACCGTTGCCACGTGCG+AGG | + | chr3_4:68697237-68697256 | None:intergenic | 65.0% | |
| ! | GGCTCACCGTGCTATTGCGG+CGG | - | chr3_4:68697344-68697363 | Msa0517220:three_prime_UTR | 65.0% |
| !! | TCCCACTTGGGTTGGCCTGG+TGG | - | chr3_4:68697984-68698003 | Msa0517220:intron | 65.0% |
| GGATGGTGTGGGGACTGGGA+AGG | - | chr3_4:68700843-68700862 | Msa0517220:intron | 65.0% | |
| GACACCTGGGACTGGGCATC+TGG | - | chr3_4:68701379-68701398 | Msa0517220:intron | 65.0% | |
| CGCACCAGATGCCCAGTCCC+AGG | + | chr3_4:68701386-68701405 | None:intergenic | 70.0% | |
| GGGACTGGGCATCTGGTGCG+TGG | - | chr3_4:68701386-68701405 | Msa0517220:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 68697228 | 68703304 | 68697228 | ID=Msa0517220;Name=Msa0517220 |
| chr3_4 | mRNA | 68697228 | 68703304 | 68697228 | ID=Msa0517220-mRNA-1;Parent=Msa0517220;Name=Msa0517220-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0.75|0.66|1|0.75|0.66|9|324|342 |
| chr3_4 | exon | 68697228 | 68697657 | 68697228 | ID=Msa0517220-mRNA-1:exon:18232;Parent=Msa0517220-mRNA-1 |
| chr3_4 | exon | 68698420 | 68698508 | 68698420 | ID=Msa0517220-mRNA-1:exon:18231;Parent=Msa0517220-mRNA-1 |
| chr3_4 | exon | 68700141 | 68700218 | 68700141 | ID=Msa0517220-mRNA-1:exon:18230;Parent=Msa0517220-mRNA-1 |
| chr3_4 | exon | 68700324 | 68700488 | 68700324 | ID=Msa0517220-mRNA-1:exon:18229;Parent=Msa0517220-mRNA-1 |
| chr3_4 | exon | 68700585 | 68700673 | 68700585 | ID=Msa0517220-mRNA-1:exon:18228;Parent=Msa0517220-mRNA-1 |
| chr3_4 | exon | 68701612 | 68701780 | 68701612 | ID=Msa0517220-mRNA-1:exon:18227;Parent=Msa0517220-mRNA-1 |
| chr3_4 | exon | 68701921 | 68701997 | 68701921 | ID=Msa0517220-mRNA-1:exon:18226;Parent=Msa0517220-mRNA-1 |
| chr3_4 | exon | 68703004 | 68703079 | 68703004 | ID=Msa0517220-mRNA-1:exon:18225;Parent=Msa0517220-mRNA-1 |
| chr3_4 | exon | 68703125 | 68703304 | 68703125 | ID=Msa0517220-mRNA-1:exon:18224;Parent=Msa0517220-mRNA-1 |
| chr3_4 | CDS | 68703125 | 68703304 | 68703125 | ID=Msa0517220-mRNA-1:cds;Parent=Msa0517220-mRNA-1 |
| chr3_4 | CDS | 68703004 | 68703079 | 68703004 | ID=Msa0517220-mRNA-1:cds;Parent=Msa0517220-mRNA-1 |
| chr3_4 | CDS | 68701921 | 68701997 | 68701921 | ID=Msa0517220-mRNA-1:cds;Parent=Msa0517220-mRNA-1 |
| chr3_4 | CDS | 68701612 | 68701780 | 68701612 | ID=Msa0517220-mRNA-1:cds;Parent=Msa0517220-mRNA-1 |
| chr3_4 | CDS | 68700585 | 68700673 | 68700585 | ID=Msa0517220-mRNA-1:cds;Parent=Msa0517220-mRNA-1 |
| chr3_4 | CDS | 68700324 | 68700488 | 68700324 | ID=Msa0517220-mRNA-1:cds;Parent=Msa0517220-mRNA-1 |
| chr3_4 | CDS | 68700141 | 68700218 | 68700141 | ID=Msa0517220-mRNA-1:cds;Parent=Msa0517220-mRNA-1 |
| chr3_4 | CDS | 68698420 | 68698508 | 68698420 | ID=Msa0517220-mRNA-1:cds;Parent=Msa0517220-mRNA-1 |
| chr3_4 | CDS | 68697552 | 68697657 | 68697552 | ID=Msa0517220-mRNA-1:cds;Parent=Msa0517220-mRNA-1 |
| chr3_4 | three_prime_UTR | 68697228 | 68697551 | 68697228 | ID=Msa0517220-mRNA-1:three_prime_utr;Parent=Msa0517220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
