Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472980 | XP_013461478.2 | 83.102 | 361 | 33 | 3 | 1 | 341 | 1 | 353 | 0.0 | 579 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472980 | sp|Q96EX2|RNFT2_HUMAN | 28.000 | 325 | 208 | 9 | 31 | 339 | 128 | 442 | 2.63e-28 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472980 | A0A396IZB5 | 83.102 | 361 | 33 | 3 | 1 | 341 | 1 | 353 | 0.0 | 579 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0426510 | Msa0472980 | 0.835714 | 1.428835e-56 | -8.615850e-47 |
| Msa0472980 | Msa0517220 | 0.935913 | 4.008356e-97 | -8.615850e-47 |
| Msa0472980 | Msa1393750 | 0.947025 | 1.497654e-105 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472980 | MtrunA17_Chr3g0128531 | 83.102 | 361 | 33 | 3 | 1 | 341 | 1 | 353 | 0.0 | 579 |
| Msa0472980 | MtrunA17_Chr5g0428621 | 69.580 | 286 | 81 | 2 | 60 | 340 | 196 | 480 | 1.04e-143 | 415 |
| Msa0472980 | MtrunA17_Chr7g0245321 | 62.807 | 285 | 101 | 1 | 61 | 340 | 141 | 425 | 7.61e-123 | 360 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472980 | AT5G01960.1 | 63.732 | 284 | 98 | 1 | 61 | 339 | 141 | 424 | 9.58e-135 | 390 |
Find 66 sgRNAs with CRISPR-Local
Find 393 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGAAGACGAAATTCTTTA+TGG | 0.134162 | 3_3:+75470173 | Msa0472980:CDS |
| TTCTATGAATTTGAGATTAA+AGG | 0.185855 | 3_3:+75472869 | Msa0472980:three_prime_UTR |
| GAACGCAATATTCATCATTT+TGG | 0.200530 | 3_3:+75468718 | Msa0472980:CDS |
| CCAAAAGATGGTGTTGCTTT+TGG | 0.234388 | 3_3:-75468695 | None:intergenic |
| GTCCAAATGTTTAGTAATAA+TGG | 0.237018 | 3_3:+75472841 | Msa0472980:three_prime_UTR |
| ATCAACAACAAGAGCGAAAA+AGG | 0.256421 | 3_3:-75467305 | None:intergenic |
| AACAATTGTGATAAACATTA+AGG | 0.268620 | 3_3:+75473109 | Msa0472980:three_prime_UTR |
| ATCCATTATTACTAAACATT+TGG | 0.291163 | 3_3:-75472843 | None:intergenic |
| CCACCGACAACATCAGTTAA+AGG | 0.319245 | 3_3:-75467209 | None:intergenic |
| CCAAAAGCAACACCATCTTT+TGG | 0.327744 | 3_3:+75468695 | Msa0472980:CDS |
| GTTTATCACAATTGTTATCA+TGG | 0.359540 | 3_3:-75473102 | None:intergenic |
| GCAGATTTCTTTGTCACAAT+TGG | 0.363731 | 3_3:+75468357 | Msa0472980:intron |
| CTATGCATTTACGAGTGTTA+TGG | 0.387657 | 3_3:+75468635 | Msa0472980:CDS |
| CCTGCTCATCTGCGGACCTT+TGG | 0.398301 | 3_3:+75472747 | Msa0472980:CDS |
| GTGTATCAGCTGTAATGTTC+AGG | 0.404247 | 3_3:+75468379 | Msa0472980:CDS |
| TAACCTGTCGACGGAAGTTA+TGG | 0.418408 | 3_3:-75469755 | None:intergenic |
| GTCCCTTTAACTGATGTTGT+CGG | 0.452080 | 3_3:+75467206 | Msa0472980:CDS |
| CTTTCTTGCCAGCACCAGTT+TGG | 0.452560 | 3_3:+75469916 | Msa0472980:CDS |
| AATGTACTTGCCCGGTGTGC+AGG | 0.460660 | 3_3:+75472712 | Msa0472980:CDS |
| CTACCAATGTCCTGCACACC+GGG | 0.467233 | 3_3:-75472722 | None:intergenic |
| CACCGACAACATCAGTTAAA+GGG | 0.474359 | 3_3:-75467208 | None:intergenic |
| CCAAAGGTCCGCAGATGAGC+AGG | 0.477758 | 3_3:-75472747 | None:intergenic |
| CTCTTCTCATCAATTATCAC+AGG | 0.485206 | 3_3:+75469972 | Msa0472980:CDS |
| AATCGGTACCAAACTGGTGC+TGG | 0.486207 | 3_3:-75469924 | None:intergenic |
| CAAGGGTCAAATCTTAACTC+TGG | 0.491542 | 3_3:+75469866 | Msa0472980:intron |
| GAAGATGCATGTTCCTATCC+TGG | 0.496904 | 3_3:+75471888 | Msa0472980:CDS |
| TAGGAACATGCATCTTCTCT+TGG | 0.500016 | 3_3:-75471882 | None:intergenic |
| ACGCCATAACTTCCGTCGAC+AGG | 0.500970 | 3_3:+75469752 | Msa0472980:CDS |
| TGTTTATGCTACATCAGAAC+AGG | 0.501816 | 3_3:+75470196 | Msa0472980:CDS |
| TAAATGCAGGTACGTGCTGC+TGG | 0.508684 | 3_3:+75471841 | Msa0472980:intron |
| AATATTGCGTTCCCAAAAGA+TGG | 0.512320 | 3_3:-75468707 | None:intergenic |
| TGTCCACAGCGAACCAGGAT+AGG | 0.526498 | 3_3:-75471901 | None:intergenic |
| TGAGAGAGAATGTACTTGCC+CGG | 0.526955 | 3_3:+75472704 | Msa0472980:CDS |
| CATCTGCGGACCTTTGGAGA+TGG | 0.534634 | 3_3:+75472753 | Msa0472980:CDS |
| CTCTGTCCGCCGCAATAGCA+CGG | 0.540543 | 3_3:-75467175 | None:intergenic |
| AAATGTTTAGTAATAATGGA+TGG | 0.543167 | 3_3:+75472845 | Msa0472980:three_prime_UTR |
| ACATGTGTCCACAGCGAACC+AGG | 0.543274 | 3_3:-75471906 | None:intergenic |
| GCTGCTTCTCAACAAGAGGC+TGG | 0.544863 | 3_3:+75467089 | Msa0472980:CDS |
| ATTATTACTAAACATTTGGA+CGG | 0.545707 | 3_3:-75472839 | None:intergenic |
| AATGGTGCGGCAAGTGGCAA+TGG | 0.548641 | 3_3:+75469689 | Msa0472980:CDS |
| TGATTCCTCGCACGTGGCAA+CGG | 0.549343 | 3_3:+75467057 | Msa0472980:CDS |
| AGCTGCTGCTTCTCAACAAG+AGG | 0.550089 | 3_3:+75467085 | Msa0472980:CDS |
| CAAGAAACATACTGCGCTGA+AGG | 0.554124 | 3_3:+75468416 | Msa0472980:CDS |
| TTGCCCGGTGTGCAGGACAT+TGG | 0.557576 | 3_3:+75472719 | Msa0472980:CDS |
| GTTAACATCTGCAGTTGAGA+AGG | 0.561594 | 3_3:+75470013 | Msa0472980:CDS |
| AGATACAATGGTGCGGCAAG+TGG | 0.567277 | 3_3:+75469683 | Msa0472980:intron |
| CCTTTAACTGATGTTGTCGG+TGG | 0.583319 | 3_3:+75467209 | Msa0472980:CDS |
| GAATGTGATGTTCTCTGAAG+AGG | 0.584677 | 3_3:+75467148 | Msa0472980:CDS |
| TCATTGGCTTTCAGATACAA+TGG | 0.588648 | 3_3:+75469671 | Msa0472980:intron |
| CATTAATCATTATCATCATG+AGG | 0.600969 | 3_3:-75473039 | None:intergenic |
| ACATCAGTTAAAGGGACTAA+CGG | 0.601383 | 3_3:-75467200 | None:intergenic |
| AGAGGCTCACCGTGCTATTG+CGG | 0.605547 | 3_3:+75467166 | Msa0472980:CDS |
| AAAAGAGAGAGCAAGAAGAG+CGG | 0.612995 | 3_3:-75468594 | None:intergenic |
| GGCTCACCGTGCTATTGCGG+CGG | 0.614817 | 3_3:+75467169 | Msa0472980:CDS |
| CGAAACCGTTGCCACGTGCG+AGG | 0.614851 | 3_3:-75467062 | None:intergenic |
| ACTACCAATGTCCTGCACAC+CGG | 0.615463 | 3_3:-75472723 | None:intergenic |
| AACTACTCCTAACCTGTCGA+CGG | 0.623342 | 3_3:-75469764 | None:intergenic |
| AAATCATACATTCCATGTGA+CGG | 0.624468 | 3_3:-75467340 | None:intergenic |
| GTTCCTATCCTGGTTCGCTG+TGG | 0.632151 | 3_3:+75471898 | Msa0472980:CDS |
| TGATCATGATTCCTCGCACG+TGG | 0.632911 | 3_3:+75467051 | None:intergenic |
| TTGGCGGAAACATGGCCAGA+GGG | 0.641387 | 3_3:-75468676 | None:intergenic |
| ACTTGTTGATCCATCTCCAA+AGG | 0.643362 | 3_3:-75472763 | None:intergenic |
| GGCTTTCAGATACAATGGTG+CGG | 0.644614 | 3_3:+75469676 | Msa0472980:intron |
| TGGTAGTACCTGCTCATCTG+CGG | 0.645210 | 3_3:+75472739 | Msa0472980:CDS |
| TTTGGCGGAAACATGGCCAG+AGG | 0.658754 | 3_3:-75468677 | None:intergenic |
| CTGTGGACACATGTTCTGCG+AGG | 0.696401 | 3_3:+75471915 | Msa0472980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTGTAATAAGTTTATT+TGG | - | chr3_3:75469254-75469273 | None:intergenic | 10.0% |
| !!! | ATCATATTCTTTTTTTTTTA+AGG | - | chr3_3:75470698-75470717 | None:intergenic | 10.0% |
| !! | ATATACTAATATTTGTATAA+TGG | + | chr3_3:75471770-75471789 | Msa0472980:intron | 10.0% |
| !! | TTATTCTATAATATAAAAGA+AGG | - | chr3_3:75472621-75472640 | None:intergenic | 10.0% |
| !! | TAGTATAATCTTTAATCATA+TGG | + | chr3_3:75467453-75467472 | Msa0472980:intron | 15.0% |
| !!! | TTTTATGTTCAAAACAAAAA+TGG | - | chr3_3:75468202-75468221 | None:intergenic | 15.0% |
| !! | TTTCAAAATGAAAATTCTAA+AGG | - | chr3_3:75468466-75468485 | None:intergenic | 15.0% |
| !! | TAAACAAAGTTATTCAAATT+TGG | - | chr3_3:75468973-75468992 | None:intergenic | 15.0% |
| !!! | AAATTTGAATAACTTTGTTT+AGG | + | chr3_3:75468972-75468991 | Msa0472980:intron | 15.0% |
| !!! | AATTTGAATAACTTTGTTTA+GGG | + | chr3_3:75468973-75468992 | Msa0472980:intron | 15.0% |
| !!! | AAATGTTTTAAATTGTTTCA+AGG | + | chr3_3:75469848-75469867 | Msa0472980:intron | 15.0% |
| !!! | AATGTTTTAAATTGTTTCAA+GGG | + | chr3_3:75469849-75469868 | Msa0472980:intron | 15.0% |
| !!! | AAAGAAAATGGAATAATTTT+GGG | - | chr3_3:75470099-75470118 | None:intergenic | 15.0% |
| !!! | TAAAGAAAATGGAATAATTT+TGG | - | chr3_3:75470100-75470119 | None:intergenic | 15.0% |
| !! | CTATAAAAGTTATTGAAAAT+TGG | + | chr3_3:75470349-75470368 | Msa0472980:intron | 15.0% |
| !! | AAAGGAATTATATACTTAAA+TGG | + | chr3_3:75470444-75470463 | Msa0472980:intron | 15.0% |
| !! | TCTAAAAATGTGTTTATAAA+TGG | - | chr3_3:75471363-75471382 | None:intergenic | 15.0% |
| !!! | ATTTAAGACAAATAAACTAT+AGG | + | chr3_3:75472010-75472029 | Msa0472980:intron | 15.0% |
| !!! | TTGTTTTTATTACCTTATCA+AGG | - | chr3_3:75468044-75468063 | None:intergenic | 20.0% |
| !! | ATAAGGTAATAAAAACAACA+TGG | + | chr3_3:75468046-75468065 | Msa0472980:intron | 20.0% |
| !! | ATATCATACAGTTAAATTGA+TGG | - | chr3_3:75468321-75468340 | None:intergenic | 20.0% |
| !!! | ATATTCATCATTTTGGTTAA+TGG | + | chr3_3:75468725-75468744 | Msa0472980:CDS | 20.0% |
| !! | TTAAAGACTAAAGTATATCA+AGG | + | chr3_3:75468893-75468912 | Msa0472980:intron | 20.0% |
| !! | TGATATTATCACATAAATTG+TGG | + | chr3_3:75469116-75469135 | Msa0472980:intron | 20.0% |
| !! | AAATTGTGGAATATATCAAT+TGG | + | chr3_3:75469130-75469149 | Msa0472980:intron | 20.0% |
| !!! | ATGTTTCTTTTAGAATTTTC+AGG | + | chr3_3:75469184-75469203 | Msa0472980:intron | 20.0% |
| !!! | TGTTTCTTTTAGAATTTTCA+GGG | + | chr3_3:75469185-75469204 | Msa0472980:intron | 20.0% |
| !!! | CAATTATTCTAATTCTTTTG+TGG | + | chr3_3:75469609-75469628 | Msa0472980:intron | 20.0% |
| !!! | AAGCTTTCATTCTTTAAAAT+TGG | + | chr3_3:75470037-75470056 | Msa0472980:intron | 20.0% |
| !! | AAAAATGATCTGATTAAATC+TGG | + | chr3_3:75470230-75470249 | Msa0472980:intron | 20.0% |
| !!! | AATTTTAGAGGTTTAAGATA+AGG | + | chr3_3:75470379-75470398 | Msa0472980:intron | 20.0% |
| !!! | ATTTTAGAGGTTTAAGATAA+GGG | + | chr3_3:75470380-75470399 | Msa0472980:intron | 20.0% |
| !! | TCATTTATGCAATCAAATAA+AGG | + | chr3_3:75470426-75470445 | Msa0472980:intron | 20.0% |
| !!! | ATAATAGAACAGCATTTTTA+TGG | + | chr3_3:75470648-75470667 | Msa0472980:intron | 20.0% |
| !!! | GTTTTTGTATACTTTTTTTG+TGG | + | chr3_3:75470797-75470816 | Msa0472980:intron | 20.0% |
| !! | TAATCTACATATACAAACAA+GGG | - | chr3_3:75470922-75470941 | None:intergenic | 20.0% |
| !! | TTAATCTACATATACAAACA+AGG | - | chr3_3:75470923-75470942 | None:intergenic | 20.0% |
| !! | AAAATGTGTTTATAAATGGT+GGG | - | chr3_3:75471359-75471378 | None:intergenic | 20.0% |
| !! | AAAAATGTGTTTATAAATGG+TGG | - | chr3_3:75471360-75471379 | None:intergenic | 20.0% |
| !! | GTAAACCTAAAATAATTATG+TGG | - | chr3_3:75472128-75472147 | None:intergenic | 20.0% |
| !! | ATAAATTCAGAAGATGAAAA+TGG | + | chr3_3:75472205-75472224 | Msa0472980:intron | 20.0% |
| !!! | AAAAGCATACATAAAGAAAT+CGG | - | chr3_3:75472336-75472355 | None:intergenic | 20.0% |
| !!! | ATTTCTTTATGTATGCTTTT+CGG | + | chr3_3:75472336-75472355 | Msa0472980:intron | 20.0% |
| !! | TAACCAATTTAATACAGATA+GGG | - | chr3_3:75472456-75472475 | None:intergenic | 20.0% |
| !! | ATAACCAATTTAATACAGAT+AGG | - | chr3_3:75472457-75472476 | None:intergenic | 20.0% |
| !! | TATCTGTATTAAATTGGTTA+TGG | + | chr3_3:75472456-75472475 | Msa0472980:intron | 20.0% |
| !! | TAATGTATCAATTATGGAAA+TGG | + | chr3_3:75472483-75472502 | Msa0472980:intron | 20.0% |
| !! | ATTATTACTAAACATTTGGA+CGG | - | chr3_3:75472842-75472861 | None:intergenic | 20.0% |
| !! | ATCCATTATTACTAAACATT+TGG | - | chr3_3:75472846-75472865 | None:intergenic | 20.0% |
| !!! | AAATGTTTAGTAATAATGGA+TGG | + | chr3_3:75472845-75472864 | Msa0472980:three_prime_UTR | 20.0% |
| !!! | TTCTATGAATTTGAGATTAA+AGG | + | chr3_3:75472869-75472888 | Msa0472980:three_prime_UTR | 20.0% |
| !! | TGAAAAAGAAAGAAAAGAAA+GGG | - | chr3_3:75472956-75472975 | None:intergenic | 20.0% |
| !! | ATGAAAAAGAAAGAAAAGAA+AGG | - | chr3_3:75472957-75472976 | None:intergenic | 20.0% |
| ! | TAAGGATCATTACAAAAACA+CGG | - | chr3_3:75467768-75467787 | None:intergenic | 25.0% |
| !! | TTTTATTACCTTATCAAGGA+GGG | - | chr3_3:75468040-75468059 | None:intergenic | 25.0% |
| !! | TTTTTATTACCTTATCAAGG+AGG | - | chr3_3:75468041-75468060 | None:intergenic | 25.0% |
| ! | TATGTTCAAAACAAAAATGG+TGG | - | chr3_3:75468199-75468218 | None:intergenic | 25.0% |
| ! | AGTTAGTGTGTTATGTTAAT+AGG | + | chr3_3:75468236-75468255 | Msa0472980:intron | 25.0% |
| ! | GTTAGTGTGTTATGTTAATA+GGG | + | chr3_3:75468237-75468256 | Msa0472980:intron | 25.0% |
| ! | TTAGTGTGTTATGTTAATAG+GGG | + | chr3_3:75468238-75468257 | Msa0472980:intron | 25.0% |
| !! | ATACAGTTAAATTGATGGAT+TGG | - | chr3_3:75468316-75468335 | None:intergenic | 25.0% |
| ! | GATAAAGCAAATAAATTGTC+TGG | - | chr3_3:75468801-75468820 | None:intergenic | 25.0% |
| ! | GACAATTTATTTGCTTTATC+AGG | + | chr3_3:75468801-75468820 | Msa0472980:intron | 25.0% |
| !! | AGTCTTTTGTATTTAATCAG+TGG | + | chr3_3:75468940-75468959 | Msa0472980:intron | 25.0% |
| !! | GTCTTTTGTATTTAATCAGT+GGG | + | chr3_3:75468941-75468960 | Msa0472980:intron | 25.0% |
| ! | ATCAATTAAAATGAGAAGTG+CGG | - | chr3_3:75469100-75469119 | None:intergenic | 25.0% |
| !!! | AAGTTTTGATCCAAAATTTG+CGG | + | chr3_3:75469285-75469304 | Msa0472980:intron | 25.0% |
| ! | GCATGAAAAATACTTCAAAT+TGG | - | chr3_3:75469326-75469345 | None:intergenic | 25.0% |
| ! | AAACTATACTTGAAAACTAC+AGG | - | chr3_3:75469810-75469829 | None:intergenic | 25.0% |
| ! | AGTCCATGTAAAAGAAAAAT+CGG | - | chr3_3:75469944-75469963 | None:intergenic | 25.0% |
| !! | TTTTTCTTTTACATGGACTT+TGG | + | chr3_3:75469945-75469964 | Msa0472980:CDS | 25.0% |
| ! | TCACCTAATAAACATATAGA+CGG | - | chr3_3:75470124-75470143 | None:intergenic | 25.0% |
| !! | ATTGGATATGCAAATTTTAG+AGG | + | chr3_3:75470367-75470386 | Msa0472980:intron | 25.0% |
| ! | ATAAATGAAGATTTGAAGGA+GGG | - | chr3_3:75470414-75470433 | None:intergenic | 25.0% |
| ! | TTGCATAAATGAAGATTTGA+AGG | - | chr3_3:75470418-75470437 | None:intergenic | 25.0% |
| ! | AGATTAACAAAGTATGTTGT+GGG | - | chr3_3:75470489-75470508 | None:intergenic | 25.0% |
| ! | TAAATTAATGCAACAGTCTT+CGG | + | chr3_3:75470524-75470543 | Msa0472980:intron | 25.0% |
| !! | AATTTGTTTAGTTGTATGCT+TGG | + | chr3_3:75470613-75470632 | Msa0472980:intron | 25.0% |
| ! | AAAGTTTCAAATGCTTATCA+AGG | + | chr3_3:75470758-75470777 | Msa0472980:intron | 25.0% |
| ! | AAGTTTCAAATGCTTATCAA+GGG | + | chr3_3:75470759-75470778 | Msa0472980:intron | 25.0% |
| ! | CAAGTAAAAACTATGAAGAT+TGG | - | chr3_3:75470852-75470871 | None:intergenic | 25.0% |
| !! | TCTTCATAGTTTTTACTTGT+TGG | + | chr3_3:75470853-75470872 | Msa0472980:intron | 25.0% |
| !!! | TTATAGAGGTTTTAGAAGTA+AGG | + | chr3_3:75471010-75471029 | Msa0472980:intron | 25.0% |
| ! | AAATGTTAAGAGTTTCACAA+TGG | - | chr3_3:75471397-75471416 | None:intergenic | 25.0% |
| !!! | AGTGGTTACATTAGTTTTTA+AGG | + | chr3_3:75471447-75471466 | Msa0472980:intron | 25.0% |
| ! | GGATAATGTATACTTTCATA+AGG | + | chr3_3:75471633-75471652 | Msa0472980:intron | 25.0% |
| ! | GGATTCTTTATATGATTATG+TGG | + | chr3_3:75471654-75471673 | Msa0472980:intron | 25.0% |
| ! | AGCAGCATTAAATAACAAAA+GGG | - | chr3_3:75471743-75471762 | None:intergenic | 25.0% |
| ! | TAGCAGCATTAAATAACAAA+AGG | - | chr3_3:75471744-75471763 | None:intergenic | 25.0% |
| !!! | TTTTTCTCTAGTCTTTTTAC+CGG | + | chr3_3:75471799-75471818 | Msa0472980:intron | 25.0% |
| ! | TAATCAATTGAGGCAATTTA+GGG | - | chr3_3:75472092-75472111 | None:intergenic | 25.0% |
| ! | ATAATCAATTGAGGCAATTT+AGG | - | chr3_3:75472093-75472112 | None:intergenic | 25.0% |
| ! | ACAATTCTGATAATCAATTG+AGG | - | chr3_3:75472102-75472121 | None:intergenic | 25.0% |
| !! | GTTGTCCACATAATTATTTT+AGG | + | chr3_3:75472120-75472139 | Msa0472980:intron | 25.0% |
| !!! | ATGCCAAATTTTAAGTGTAA+CGG | - | chr3_3:75472155-75472174 | None:intergenic | 25.0% |
| ! | AACCAATTTAATACAGATAG+GGG | - | chr3_3:75472455-75472474 | None:intergenic | 25.0% |
| ! | GGAAGATAATGTATCAATTA+TGG | + | chr3_3:75472477-75472496 | Msa0472980:intron | 25.0% |
| ! | GTCCAAATGTTTAGTAATAA+TGG | + | chr3_3:75472841-75472860 | Msa0472980:three_prime_UTR | 25.0% |
| !!! | TCTTTTTCATTAAAACTGCA+AGG | + | chr3_3:75472967-75472986 | Msa0472980:three_prime_UTR | 25.0% |
| ! | CATTAATCATTATCATCATG+AGG | - | chr3_3:75473042-75473061 | None:intergenic | 25.0% |
| ! | GTTTATCACAATTGTTATCA+TGG | - | chr3_3:75473105-75473124 | None:intergenic | 25.0% |
| AAAATCAAACCAGGAAAAAG+TGG | - | chr3_3:75467252-75467271 | None:intergenic | 30.0% | |
| AAATCATACATTCCATGTGA+CGG | - | chr3_3:75467343-75467362 | None:intergenic | 30.0% | |
| ! | TTCTTTTGTCCTTCAAATGT+TGG | + | chr3_3:75467380-75467399 | Msa0472980:intron | 30.0% |
| AGCTTAGAGATTATCAAGTA+AGG | - | chr3_3:75467786-75467805 | None:intergenic | 30.0% | |
| TTAATTGCGTAGTGATTCTA+TGG | + | chr3_3:75468098-75468117 | Msa0472980:intron | 30.0% | |
| TTTCCTCTAAGTTTCTACTT+CGG | + | chr3_3:75468167-75468186 | Msa0472980:intron | 30.0% | |
| TAAAGGACTTGCATAGTTAT+GGG | - | chr3_3:75468449-75468468 | None:intergenic | 30.0% | |
| ! | TTTTTCGTCATCTTTTTGTG+AGG | - | chr3_3:75468523-75468542 | None:intergenic | 30.0% |
| GATGACGAAAAAAATTAGAG+AGG | + | chr3_3:75468531-75468550 | Msa0472980:intron | 30.0% | |
| ! | AATTCGATTTCTGTTTTGCA+GGG | + | chr3_3:75468557-75468576 | Msa0472980:intron | 30.0% |
| ! | GAACGCAATATTCATCATTT+TGG | + | chr3_3:75468718-75468737 | Msa0472980:CDS | 30.0% |
| !!! | CATCATTTTGGTTAATGGTA+TGG | + | chr3_3:75468730-75468749 | Msa0472980:intron | 30.0% |
| ACTAAAGTATATCAAGGATG+TGG | + | chr3_3:75468899-75468918 | Msa0472980:intron | 30.0% | |
| GTTAGATAACCAACCAATAA+TGG | - | chr3_3:75469078-75469097 | None:intergenic | 30.0% | |
| !! | AGTTTTGATCCAAAATTTGC+GGG | + | chr3_3:75469286-75469305 | Msa0472980:intron | 30.0% |
| TAAATGCAAACAGGCAAATT+TGG | - | chr3_3:75469382-75469401 | None:intergenic | 30.0% | |
| AAAACTGCTTAAATGCAAAC+AGG | - | chr3_3:75469391-75469410 | None:intergenic | 30.0% | |
| ACACACAAAAATAATACACC+AGG | - | chr3_3:75469555-75469574 | None:intergenic | 30.0% | |
| !! | TTGCTGATTTACTGCAAAAA+TGG | + | chr3_3:75469726-75469745 | Msa0472980:CDS | 30.0% |
| !!! | GTACCGATTTTTCTTTTACA+TGG | + | chr3_3:75469938-75469957 | Msa0472980:CDS | 30.0% |
| ATATAGACGGGTAAAGAAAA+TGG | - | chr3_3:75470111-75470130 | None:intergenic | 30.0% | |
| TACCCGTCTATATGTTTATT+AGG | + | chr3_3:75470118-75470137 | Msa0472980:intron | 30.0% | |
| CACCTAATAAACATATAGAC+GGG | - | chr3_3:75470123-75470142 | None:intergenic | 30.0% | |
| !! | GTCTTCTGATAATGCTTTTA+AGG | - | chr3_3:75470162-75470181 | None:intergenic | 30.0% |
| TCAGAAGACGAAATTCTTTA+TGG | + | chr3_3:75470173-75470192 | Msa0472980:CDS | 30.0% | |
| CATAAATGAAGATTTGAAGG+AGG | - | chr3_3:75470415-75470434 | None:intergenic | 30.0% | |
| CAGATTAACAAAGTATGTTG+TGG | - | chr3_3:75470490-75470509 | None:intergenic | 30.0% | |
| TCGGTTATAGTAAAAAGATG+TGG | + | chr3_3:75470543-75470562 | Msa0472980:intron | 30.0% | |
| ! | TAGAACAGCATTTTTATGGA+TGG | + | chr3_3:75470652-75470671 | Msa0472980:intron | 30.0% |
| AAGCTTTCAGAAAAAAGATG+AGG | - | chr3_3:75470735-75470754 | None:intergenic | 30.0% | |
| !! | TTTTGTGGATGCTACTTATT+TGG | + | chr3_3:75470812-75470831 | Msa0472980:intron | 30.0% |
| GACACAATTAAATGCAAACA+AGG | - | chr3_3:75471057-75471076 | None:intergenic | 30.0% | |
| TGCAAATGTTTATAAGTGGT+GGG | - | chr3_3:75471144-75471163 | None:intergenic | 30.0% | |
| !! | CAAGTCGATTTTGTAAGAAT+GGG | - | chr3_3:75471322-75471341 | None:intergenic | 30.0% |
| !! | ACAAGTCGATTTTGTAAGAA+TGG | - | chr3_3:75471323-75471342 | None:intergenic | 30.0% |
| GTATTACTGTTTGTAAACAG+TGG | + | chr3_3:75471429-75471448 | Msa0472980:intron | 30.0% | |
| !! | TTGCTTTTACATTGCTTTGT+TGG | + | chr3_3:75471545-75471564 | Msa0472980:intron | 30.0% |
| !!! | CTTTTATTTTCTCAAGTGCT+TGG | + | chr3_3:75471579-75471598 | Msa0472980:intron | 30.0% |
| ! | CTTTCATTTTCTTAAGTGCT+TGG | + | chr3_3:75471612-75471631 | Msa0472980:intron | 30.0% |
| AGCATTAAATAACAAAAGGG+AGG | - | chr3_3:75471740-75471759 | None:intergenic | 30.0% | |
| ! | TAAGTTGAGTATCTAAATGC+AGG | + | chr3_3:75471828-75471847 | Msa0472980:intron | 30.0% |
| AATCAATTGAGGCAATTTAG+GGG | - | chr3_3:75472091-75472110 | None:intergenic | 30.0% | |
| TCTCCGTTACACTTAAAATT+TGG | + | chr3_3:75472149-75472168 | Msa0472980:intron | 30.0% | |
| ! | ATATTTGCTAGATATTGCAG+TGG | + | chr3_3:75472175-75472194 | Msa0472980:intron | 30.0% |
| CAAGTCTAATAAATAGTCTG+AGG | - | chr3_3:75472292-75472311 | None:intergenic | 30.0% | |
| ! | AAGTGTTGCATTGTTAAATG+TGG | + | chr3_3:75472374-75472393 | Msa0472980:intron | 30.0% |
| AAATGTGGCTAATAATTGTG+TGG | + | chr3_3:75472389-75472408 | Msa0472980:intron | 30.0% | |
| ACCAATTTAATACAGATAGG+GGG | - | chr3_3:75472454-75472473 | None:intergenic | 30.0% | |
| !! | AAATCACATTTCTGGTCATT+AGG | - | chr3_3:75472551-75472570 | None:intergenic | 30.0% |
| !!! | TAGACTCAGTTTTGAAGTTT+GGG | - | chr3_3:75472575-75472594 | None:intergenic | 30.0% |
| !!! | ATAGACTCAGTTTTGAAGTT+TGG | - | chr3_3:75472576-75472595 | None:intergenic | 30.0% |
| AAACTTCAAAACTGAGTCTA+TGG | + | chr3_3:75472575-75472594 | Msa0472980:intron | 30.0% | |
| !! | ATTTACCAATTTGTTTTCCC+AGG | + | chr3_3:75472679-75472698 | Msa0472980:intron | 30.0% |
| ! | TTTTCATTAAAACTGCAAGG+AGG | + | chr3_3:75472970-75472989 | Msa0472980:three_prime_UTR | 30.0% |
| AGAAGAAGAAGAAGAAGAAG+AGG | - | chr3_3:75467120-75467139 | None:intergenic | 35.0% | |
| CTTCTTCTTCTTCTTCATCA+CGG | + | chr3_3:75467126-75467145 | Msa0472980:CDS | 35.0% | |
| ACATCAGTTAAAGGGACTAA+CGG | - | chr3_3:75467203-75467222 | None:intergenic | 35.0% | |
| AATCTGCTGAAAATCAAACC+AGG | - | chr3_3:75467261-75467280 | None:intergenic | 35.0% | |
| ! | TTTTCAGCAGATTGCTAAGA+TGG | + | chr3_3:75467268-75467287 | Msa0472980:intron | 35.0% |
| ATCAACAACAAGAGCGAAAA+AGG | - | chr3_3:75467308-75467327 | None:intergenic | 35.0% | |
| TTGTCCTTCAAATGTTGGAT+TGG | + | chr3_3:75467385-75467404 | Msa0472980:intron | 35.0% | |
| CAATCCAATCCAACATTTGA+AGG | - | chr3_3:75467392-75467411 | None:intergenic | 35.0% | |
| ! | TCAAATGTTGGATTGGATTG+TGG | + | chr3_3:75467392-75467411 | Msa0472980:intron | 35.0% |
| TGTGAGCAACAAAATGAAGT+TGG | - | chr3_3:75467484-75467503 | None:intergenic | 35.0% | |
| !! | CACCGTTACTTTGAGATATT+GGG | + | chr3_3:75467507-75467526 | Msa0472980:intron | 35.0% |
| TGCCCAATATCTCAAAGTAA+CGG | - | chr3_3:75467512-75467531 | None:intergenic | 35.0% | |
| ! | TTTGAGATATTGGGCATGTT+TGG | + | chr3_3:75467516-75467535 | Msa0472980:intron | 35.0% |
| TCAAATAAGCCAATCCAAAC+AGG | + | chr3_3:75467725-75467744 | Msa0472980:intron | 35.0% | |
| ! | CTAAACTAGCTCTCCAAAAT+TGG | - | chr3_3:75467897-75467916 | None:intergenic | 35.0% |
| GTAGTGATTCTATGGTCTAA+GGG | + | chr3_3:75468106-75468125 | Msa0472980:intron | 35.0% | |
| ATAGGGTTTGAGTGATAAAG+AGG | - | chr3_3:75468278-75468297 | None:intergenic | 35.0% | |
| ! | GGATTCGAAGGTATAACATA+GGG | - | chr3_3:75468295-75468314 | None:intergenic | 35.0% |
| ! | TGGATTCGAAGGTATAACAT+AGG | - | chr3_3:75468296-75468315 | None:intergenic | 35.0% |
| !! | AATTGATGGATTGGATTCGA+AGG | - | chr3_3:75468307-75468326 | None:intergenic | 35.0% |
| GCAGATTTCTTTGTCACAAT+TGG | + | chr3_3:75468357-75468376 | Msa0472980:intron | 35.0% | |
| CTAAAGGACTTGCATAGTTA+TGG | - | chr3_3:75468450-75468469 | None:intergenic | 35.0% | |
| ! | CAATTCGATTTCTGTTTTGC+AGG | + | chr3_3:75468556-75468575 | Msa0472980:intron | 35.0% |
| CTATGCATTTACGAGTGTTA+TGG | + | chr3_3:75468635-75468654 | Msa0472980:CDS | 35.0% | |
| !! | TGATGATGTTTTATTCCCTC+TGG | + | chr3_3:75468661-75468680 | Msa0472980:CDS | 35.0% |
| ! | CAAAAGCAACACCATCTTTT+GGG | + | chr3_3:75468696-75468715 | Msa0472980:CDS | 35.0% |
| AATATTGCGTTCCCAAAAGA+TGG | - | chr3_3:75468710-75468729 | None:intergenic | 35.0% | |
| AAGTATATCAAGGATGTGGA+AGG | + | chr3_3:75468903-75468922 | Msa0472980:intron | 35.0% | |
| TTAACAGTTCTTTGCCAATG+CGG | + | chr3_3:75469001-75469020 | Msa0472980:intron | 35.0% | |
| AAATAATACACCAGGACACT+GGG | - | chr3_3:75469547-75469566 | None:intergenic | 35.0% | |
| AAAATAATACACCAGGACAC+TGG | - | chr3_3:75469548-75469567 | None:intergenic | 35.0% | |
| GTGTTGTCTATTCTCGATAT+TGG | + | chr3_3:75469571-75469590 | Msa0472980:intron | 35.0% | |
| ! | TCTCGATATTGGTGTTTCTA+TGG | + | chr3_3:75469582-75469601 | Msa0472980:intron | 35.0% |
| TTGTGGTGAGAAACAATTAC+TGG | + | chr3_3:75469626-75469645 | Msa0472980:intron | 35.0% | |
| ! | CAATTACTGGTTAGTATCCA+TGG | + | chr3_3:75469639-75469658 | Msa0472980:intron | 35.0% |
| TCCATGGTCACAATATTCAT+TGG | + | chr3_3:75469655-75469674 | Msa0472980:intron | 35.0% | |
| !! | TCATTGGCTTTCAGATACAA+TGG | + | chr3_3:75469671-75469690 | Msa0472980:intron | 35.0% |
| AAGAAAAATCGGTACCAAAC+TGG | - | chr3_3:75469933-75469952 | None:intergenic | 35.0% | |
| CTCTTCTCATCAATTATCAC+AGG | + | chr3_3:75469972-75469991 | Msa0472980:CDS | 35.0% | |
| TGTTTATGCTACATCAGAAC+AGG | + | chr3_3:75470196-75470215 | Msa0472980:CDS | 35.0% | |
| CATGATGACACAATGCATTA+TGG | - | chr3_3:75470587-75470606 | None:intergenic | 35.0% | |
| ! | AGCATTTTTATGGATGGTGT+GGG | + | chr3_3:75470658-75470677 | Msa0472980:intron | 35.0% |
| ! | GGATGCTACTTATTTGGTTA+CGG | + | chr3_3:75470818-75470837 | Msa0472980:intron | 35.0% |
| AAAACCTCTATAAGCTGACT+CGG | - | chr3_3:75471003-75471022 | None:intergenic | 35.0% | |
| !!! | TAGAGGTTTTAGAAGTAAGG+AGG | + | chr3_3:75471013-75471032 | Msa0472980:intron | 35.0% |
| !!! | AGAGGTTTTAGAAGTAAGGA+GGG | + | chr3_3:75471014-75471033 | Msa0472980:intron | 35.0% |
| AATTCAAGCCCTTACAAAAC+CGG | + | chr3_3:75471098-75471117 | Msa0472980:intron | 35.0% | |
| CTGCAAATGTTTATAAGTGG+TGG | - | chr3_3:75471145-75471164 | None:intergenic | 35.0% | |
| CACCACTTATAAACATTTGC+AGG | + | chr3_3:75471143-75471162 | Msa0472980:intron | 35.0% | |
| GACCTGCAAATGTTTATAAG+TGG | - | chr3_3:75471148-75471167 | None:intergenic | 35.0% | |
| TGTGATGCCATCTTAGAATT+TGG | + | chr3_3:75471285-75471304 | Msa0472980:intron | 35.0% | |
| GTGATGCCATCTTAGAATTT+GGG | + | chr3_3:75471286-75471305 | Msa0472980:intron | 35.0% | |
| !! | CGATTTTGTAAGAATGGGTT+AGG | - | chr3_3:75471317-75471336 | None:intergenic | 35.0% |
| ! | ATGCTTGAATGGTTAGTTGA+GGG | - | chr3_3:75471508-75471527 | None:intergenic | 35.0% |
| ! | TACATTGCTTTGTTGGATTG+TGG | + | chr3_3:75471552-75471571 | Msa0472980:intron | 35.0% |
| ATATGATTATGTGGAAGAGC+TGG | + | chr3_3:75471663-75471682 | Msa0472980:intron | 35.0% | |
| ! | AGCATGAGAATAGGGTATTA+GGG | + | chr3_3:75472412-75472431 | Msa0472980:intron | 35.0% |
| ATAAATAGCACTCTCTGCTT+TGG | + | chr3_3:75472524-75472543 | Msa0472980:intron | 35.0% | |
| !!! | AGACTCAGTTTTGAAGTTTG+GGG | - | chr3_3:75472574-75472593 | None:intergenic | 35.0% |
| TCAAACCTGGGAAAACAAAT+TGG | - | chr3_3:75472687-75472706 | None:intergenic | 35.0% | |
| ! | GAATGTGATGTTCTCTGAAG+AGG | + | chr3_3:75467148-75467167 | Msa0472980:CDS | 40.0% |
| GTCCCTTTAACTGATGTTGT+CGG | + | chr3_3:75467206-75467225 | Msa0472980:CDS | 40.0% | |
| CACCGACAACATCAGTTAAA+GGG | - | chr3_3:75467211-75467230 | None:intergenic | 40.0% | |
| !! | GCACCGTTACTTTGAGATAT+TGG | + | chr3_3:75467506-75467525 | Msa0472980:intron | 40.0% |
| !! | ATTAACATGATGGGCCTGTT+TGG | - | chr3_3:75467742-75467761 | None:intergenic | 40.0% |
| ! | ACACGGAGCATTAACATGAT+GGG | - | chr3_3:75467751-75467770 | None:intergenic | 40.0% |
| ! | AACACGGAGCATTAACATGA+TGG | - | chr3_3:75467752-75467771 | None:intergenic | 40.0% |
| TCTAAGCTTTACTCCCACTT+GGG | + | chr3_3:75467798-75467817 | Msa0472980:intron | 40.0% | |
| CTTCTTCACTGAGTAAAGCT+TGG | - | chr3_3:75467951-75467970 | None:intergenic | 40.0% | |
| CGTAGTGATTCTATGGTCTA+AGG | + | chr3_3:75468105-75468124 | Msa0472980:intron | 40.0% | |
| GTGTATCAGCTGTAATGTTC+AGG | + | chr3_3:75468379-75468398 | Msa0472980:CDS | 40.0% | |
| ! | CATCTTTTTGTGAGGAGGAT+GGG | - | chr3_3:75468515-75468534 | None:intergenic | 40.0% |
| ! | TCATCTTTTTGTGAGGAGGA+TGG | - | chr3_3:75468516-75468535 | None:intergenic | 40.0% |
| ! | TTCGTCATCTTTTTGTGAGG+AGG | - | chr3_3:75468520-75468539 | None:intergenic | 40.0% |
| AAAAGAGAGAGCAAGAAGAG+CGG | - | chr3_3:75468597-75468616 | None:intergenic | 40.0% | |
| !!! | AAAGATGGTGTTGCTTTTGG+CGG | - | chr3_3:75468695-75468714 | None:intergenic | 40.0% |
| !!! | CCAAAAGATGGTGTTGCTTT+TGG | - | chr3_3:75468698-75468717 | None:intergenic | 40.0% |
| ! | CCAAAAGCAACACCATCTTT+TGG | + | chr3_3:75468695-75468714 | Msa0472980:CDS | 40.0% |
| TAACAGTTCTTTGCCAATGC+GGG | + | chr3_3:75469002-75469021 | Msa0472980:intron | 40.0% | |
| ! | AATGCAAGACCCGCAAATTT+TGG | - | chr3_3:75469298-75469317 | None:intergenic | 40.0% |
| ! | CTTAGCTGCTGCAATGTTTT+AGG | + | chr3_3:75469453-75469472 | Msa0472980:intron | 40.0% |
| AATAATACACCAGGACACTG+GGG | - | chr3_3:75469546-75469565 | None:intergenic | 40.0% | |
| GCCAATGAATATTGTGACCA+TGG | - | chr3_3:75469659-75469678 | None:intergenic | 40.0% | |
| ! | CAGGCTTTTTGTGAAAAGCA+AGG | - | chr3_3:75469791-75469810 | None:intergenic | 40.0% |
| CAAGGGTCAAATCTTAACTC+TGG | + | chr3_3:75469866-75469885 | Msa0472980:intron | 40.0% | |
| GTTAACATCTGCAGTTGAGA+AGG | + | chr3_3:75470013-75470032 | Msa0472980:CDS | 40.0% | |
| AAAGTATGTTGTGGGCAAAG+AGG | - | chr3_3:75470481-75470500 | None:intergenic | 40.0% | |
| ! | CAGCATTTTTATGGATGGTG+TGG | + | chr3_3:75470657-75470676 | Msa0472980:intron | 40.0% |
| ! | GCATTTTTATGGATGGTGTG+GGG | + | chr3_3:75470659-75470678 | Msa0472980:intron | 40.0% |
| TCAAATGCTTATCAAGGGAC+AGG | + | chr3_3:75470764-75470783 | Msa0472980:intron | 40.0% | |
| CAAATGCTTATCAAGGGACA+GGG | + | chr3_3:75470765-75470784 | Msa0472980:intron | 40.0% | |
| ! | CCAAATTTGAAGCAAGAGTC+AGG | - | chr3_3:75470969-75470988 | None:intergenic | 40.0% |
| CCTGACTCTTGCTTCAAATT+TGG | + | chr3_3:75470966-75470985 | Msa0472980:intron | 40.0% | |
| !! | CTTACAAGCCGGTTTTGTAA+GGG | - | chr3_3:75471109-75471128 | None:intergenic | 40.0% |
| AGTTTCATCACCTTACAAGC+CGG | - | chr3_3:75471120-75471139 | None:intergenic | 40.0% | |
| TGTGTTAAGTGTCCCACATT+GGG | - | chr3_3:75471179-75471198 | None:intergenic | 40.0% | |
| TTAACACACTTACTGACACC+TGG | + | chr3_3:75471191-75471210 | Msa0472980:intron | 40.0% | |
| TAACACACTTACTGACACCT+GGG | + | chr3_3:75471192-75471211 | Msa0472980:intron | 40.0% | |
| TGCCATCTTAGAATTTGGGA+TGG | + | chr3_3:75471290-75471309 | Msa0472980:intron | 40.0% | |
| ! | GCCATCTTAGAATTTGGGAT+GGG | + | chr3_3:75471291-75471310 | Msa0472980:intron | 40.0% |
| GGTTTGAACGACTTCCTAAT+TGG | + | chr3_3:75471468-75471487 | Msa0472980:intron | 40.0% | |
| AGGTTGAAGGAGTTCCAATT+AGG | - | chr3_3:75471485-75471504 | None:intergenic | 40.0% | |
| ! | GATGCTTGAATGGTTAGTTG+AGG | - | chr3_3:75471509-75471528 | None:intergenic | 40.0% |
| AACCATTCAAGCATCCTACT+TGG | + | chr3_3:75471514-75471533 | Msa0472980:intron | 40.0% | |
| ACCATTCAAGCATCCTACTT+GGG | + | chr3_3:75471515-75471534 | Msa0472980:intron | 40.0% | |
| !! | ACGTCTTTGAAACATCGACA+CGG | + | chr3_3:75471686-75471705 | Msa0472980:intron | 40.0% |
| GATACTCAACTTAGAACTGC+CGG | - | chr3_3:75471821-75471840 | None:intergenic | 40.0% | |
| TAGGAACATGCATCTTCTCT+TGG | - | chr3_3:75471885-75471904 | None:intergenic | 40.0% | |
| TGAGGATGCATAACAAGCAA+GGG | - | chr3_3:75472274-75472293 | None:intergenic | 40.0% | |
| ATCGGAAACTATCAAGAAGC+AGG | - | chr3_3:75472318-75472337 | None:intergenic | 40.0% | |
| ATTGTGTGGAGCATGAGAAT+AGG | + | chr3_3:75472403-75472422 | Msa0472980:intron | 40.0% | |
| TTGTGTGGAGCATGAGAATA+GGG | + | chr3_3:75472404-75472423 | Msa0472980:intron | 40.0% | |
| ! | GAGCATGAGAATAGGGTATT+AGG | + | chr3_3:75472411-75472430 | Msa0472980:intron | 40.0% |
| ! | TGAGAATAGGGTATTAGGGA+AGG | + | chr3_3:75472416-75472435 | Msa0472980:intron | 40.0% |
| GCCCCCTATCTGTATTAAAT+TGG | + | chr3_3:75472450-75472469 | Msa0472980:intron | 40.0% | |
| GTTTGGGGAAATCACATTTC+TGG | - | chr3_3:75472559-75472578 | None:intergenic | 40.0% | |
| TCAAAACTGAGTCTATGGCA+TGG | + | chr3_3:75472580-75472599 | Msa0472980:intron | 40.0% | |
| GTACATTCTCTCTCAAACCT+GGG | - | chr3_3:75472699-75472718 | None:intergenic | 40.0% | |
| AGTACATTCTCTCTCAAACC+TGG | - | chr3_3:75472700-75472719 | None:intergenic | 40.0% | |
| ! | ACTTGTTGATCCATCTCCAA+AGG | - | chr3_3:75472766-75472785 | None:intergenic | 40.0% |
| CCACCGACAACATCAGTTAA+AGG | - | chr3_3:75467212-75467231 | None:intergenic | 45.0% | |
| CCTTTAACTGATGTTGTCGG+TGG | + | chr3_3:75467209-75467228 | Msa0472980:CDS | 45.0% | |
| !!! | ACAGCTTCTCCACTTTTTCC+TGG | + | chr3_3:75467240-75467259 | Msa0472980:intron | 45.0% |
| !!! | TGTTTTGATACGCCGTCACA+TGG | + | chr3_3:75467328-75467347 | Msa0472980:CDS | 45.0% |
| CTCTAAGCTTTACTCCCACT+TGG | + | chr3_3:75467797-75467816 | Msa0472980:intron | 45.0% | |
| ATCAAACCTGAGACCTTGAG+AGG | - | chr3_3:75467863-75467882 | None:intergenic | 45.0% | |
| ! | ATTCTCCCGGATGCCAATTT+TGG | + | chr3_3:75467881-75467900 | Msa0472980:intron | 45.0% |
| AGCTCTCCAAAATTGGCATC+CGG | - | chr3_3:75467890-75467909 | None:intergenic | 45.0% | |
| GTCTTCATCCCTCCTTGATA+AGG | + | chr3_3:75468029-75468048 | Msa0472980:intron | 45.0% | |
| GATTCTATGGTCTAAGGGCA+TGG | + | chr3_3:75468111-75468130 | Msa0472980:intron | 45.0% | |
| CAGCCGAAGTAGAAACTTAG+AGG | - | chr3_3:75468173-75468192 | None:intergenic | 45.0% | |
| CAAGAAACATACTGCGCTGA+AGG | + | chr3_3:75468416-75468435 | Msa0472980:CDS | 45.0% | |
| !!! | TGTTGCTTTTGGCGGAAACA+TGG | - | chr3_3:75468687-75468706 | None:intergenic | 45.0% |
| ACTTGGTCAACCTTCTTCTC+CGG | + | chr3_3:75469032-75469051 | Msa0472980:intron | 45.0% | |
| ATGCAATTGTCCGGAGAAGA+AGG | - | chr3_3:75469045-75469064 | None:intergenic | 45.0% | |
| TCCGGACAATTGCATCACTT+GGG | + | chr3_3:75469050-75469069 | Msa0472980:intron | 45.0% | |
| CATCACTTGGGGTCCATTAT+TGG | + | chr3_3:75469062-75469081 | Msa0472980:intron | 45.0% | |
| ACTTGGGGTCCATTATTGGT+TGG | + | chr3_3:75469066-75469085 | Msa0472980:intron | 45.0% | |
| GTTACTCTTGTATGCCATGC+AGG | + | chr3_3:75469213-75469232 | Msa0472980:intron | 45.0% | |
| TGCCATGCAGGAAACAATGA+CGG | + | chr3_3:75469225-75469244 | Msa0472980:intron | 45.0% | |
| TTCCGTCATTGTTTCCTGCA+TGG | - | chr3_3:75469230-75469249 | None:intergenic | 45.0% | |
| GGCTTTCAGATACAATGGTG+CGG | + | chr3_3:75469676-75469695 | Msa0472980:intron | 45.0% | |
| TAACCTGTCGACGGAAGTTA+TGG | - | chr3_3:75469758-75469777 | None:intergenic | 45.0% | |
| ATAACTTCCGTCGACAGGTT+AGG | + | chr3_3:75469757-75469776 | Msa0472980:intron | 45.0% | |
| AACTACTCCTAACCTGTCGA+CGG | - | chr3_3:75469767-75469786 | None:intergenic | 45.0% | |
| AAGATTTGAAGGAGGGACAC+AGG | - | chr3_3:75470407-75470426 | None:intergenic | 45.0% | |
| GTAAGGAGGGAAGATCTTTG+TGG | + | chr3_3:75471027-75471046 | Msa0472980:intron | 45.0% | |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | - | chr3_3:75471110-75471129 | None:intergenic | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+AGG | + | chr3_3:75471107-75471126 | Msa0472980:intron | 45.0% |
| AGGTCATATCTCACCCAATG+TGG | + | chr3_3:75471163-75471182 | Msa0472980:intron | 45.0% | |
| GGTCATATCTCACCCAATGT+GGG | + | chr3_3:75471164-75471183 | Msa0472980:intron | 45.0% | |
| GTGTGTTAAGTGTCCCACAT+TGG | - | chr3_3:75471180-75471199 | None:intergenic | 45.0% | |
| CAGCCTATCCAAGATCTGTT+GGG | - | chr3_3:75471267-75471286 | None:intergenic | 45.0% | |
| ACAGCCTATCCAAGATCTGT+TGG | - | chr3_3:75471268-75471287 | None:intergenic | 45.0% | |
| ! | GCCCATCCCAAATTCTAAGA+TGG | - | chr3_3:75471295-75471314 | None:intergenic | 45.0% |
| ! | CTTGAATGGTTAGTTGAGGG+AGG | - | chr3_3:75471505-75471524 | None:intergenic | 45.0% |
| TCCCAAGTAGGATGCTTGAA+TGG | - | chr3_3:75471519-75471538 | None:intergenic | 45.0% | |
| AAGCAAGAACTGTCCCAAGT+AGG | - | chr3_3:75471531-75471550 | None:intergenic | 45.0% | |
| GAAGATGCATGTTCCTATCC+TGG | + | chr3_3:75471888-75471907 | Msa0472980:CDS | 45.0% | |
| CTGAGGATGCATAACAAGCA+AGG | - | chr3_3:75472275-75472294 | None:intergenic | 45.0% | |
| ! | GAATAGGGTATTAGGGAAGG+AGG | + | chr3_3:75472419-75472438 | Msa0472980:intron | 45.0% |
| ! | ATTAGGGAAGGAGGTATGCA+TGG | + | chr3_3:75472428-75472447 | Msa0472980:intron | 45.0% |
| TGAGAGAGAATGTACTTGCC+CGG | + | chr3_3:75472704-75472723 | Msa0472980:CDS | 45.0% | |
| !! | AAAAAATAAAAATAAGTTTA+TGG | + | chr3_3:75472896-75472915 | Msa0472980:three_prime_UTR | 5.0% |
| ! | AGCTGCTGCTTCTCAACAAG+AGG | + | chr3_3:75467085-75467104 | Msa0472980:CDS | 50.0% |
| !! | CATGATGGGCCTGTTTGGAT+TGG | - | chr3_3:75467737-75467756 | None:intergenic | 50.0% |
| AGCTTTACTCCCACTTGGGT+TGG | + | chr3_3:75467802-75467821 | Msa0472980:intron | 50.0% | |
| GGTCTCAGGTTTGATTCTCC+CGG | + | chr3_3:75467868-75467887 | Msa0472980:intron | 50.0% | |
| GCTCTCCAAAATTGGCATCC+GGG | - | chr3_3:75467889-75467908 | None:intergenic | 50.0% | |
| AGTTCTTTGCCAATGCGGGT+TGG | + | chr3_3:75469006-75469025 | Msa0472980:intron | 50.0% | |
| CTCCGGACAATTGCATCACT+TGG | + | chr3_3:75469049-75469068 | Msa0472980:intron | 50.0% | |
| CCCCAAGTGATGCAATTGTC+CGG | - | chr3_3:75469054-75469073 | None:intergenic | 50.0% | |
| CCGGACAATTGCATCACTTG+GGG | + | chr3_3:75469051-75469070 | Msa0472980:intron | 50.0% | |
| GCTATTGTGTGCGCTGTTGA+TGG | + | chr3_3:75469156-75469175 | Msa0472980:intron | 50.0% | |
| AGATACAATGGTGCGGCAAG+TGG | + | chr3_3:75469683-75469702 | Msa0472980:intron | 50.0% | |
| CTTTCTTGCCAGCACCAGTT+TGG | + | chr3_3:75469916-75469935 | Msa0472980:CDS | 50.0% | |
| AATCGGTACCAAACTGGTGC+TGG | - | chr3_3:75469927-75469946 | None:intergenic | 50.0% | |
| TTTATGGATGGTGTGGGGAC+TGG | + | chr3_3:75470664-75470683 | Msa0472980:intron | 50.0% | |
| TTATGGATGGTGTGGGGACT+GGG | + | chr3_3:75470665-75470684 | Msa0472980:intron | 50.0% | |
| TCAAGGGACAGGGAAACGTA+AGG | + | chr3_3:75470775-75470794 | Msa0472980:intron | 50.0% | |
| TCTGCCGAGTCAGCTTATAG+AGG | + | chr3_3:75470996-75471015 | Msa0472980:intron | 50.0% | |
| ACTTACTGACACCTGGGACT+GGG | + | chr3_3:75471198-75471217 | Msa0472980:intron | 50.0% | |
| AGCGATGACCTGATAGCATG+TGG | + | chr3_3:75471241-75471260 | Msa0472980:intron | 50.0% | |
| TGGCCCAACAGATCTTGGAT+AGG | + | chr3_3:75471261-75471280 | Msa0472980:intron | 50.0% | |
| ! | GGTTAGTTGAGGGAGGTTGA+AGG | - | chr3_3:75471498-75471517 | None:intergenic | 50.0% |
| TAAATGCAGGTACGTGCTGC+TGG | + | chr3_3:75471841-75471860 | Msa0472980:intron | 50.0% | |
| ! | GCGAGGAGTGTGTATCTGAA+TGG | + | chr3_3:75471932-75471951 | Msa0472980:intron | 50.0% |
| GGTTGGACGCCTTCAGTATA+GGG | + | chr3_3:75472060-75472079 | Msa0472980:intron | 50.0% | |
| GGGGATATGCCCTATACTGA+AGG | - | chr3_3:75472072-75472091 | None:intergenic | 50.0% | |
| ACTACCAATGTCCTGCACAC+CGG | - | chr3_3:75472726-75472745 | None:intergenic | 50.0% | |
| TGGTAGTACCTGCTCATCTG+CGG | + | chr3_3:75472739-75472758 | Msa0472980:CDS | 50.0% | |
| TGATTCCTCGCACGTGGCAA+CGG | + | chr3_3:75467057-75467076 | Msa0472980:CDS | 55.0% | |
| GCTGCTTCTCAACAAGAGGC+TGG | + | chr3_3:75467089-75467108 | Msa0472980:CDS | 55.0% | |
| ! | AGAGGCTCACCGTGCTATTG+CGG | + | chr3_3:75467166-75467185 | Msa0472980:CDS | 55.0% |
| GCGTTTGTGTAAGCTCGCAC+AGG | + | chr3_3:75467586-75467605 | Msa0472980:intron | 55.0% | |
| !! | TTGGGTTGGCCTGGTGGTAT+TGG | + | chr3_3:75467816-75467835 | Msa0472980:intron | 55.0% |
| !! | TTGGCCTGGTGGTATTGGCT+TGG | + | chr3_3:75467821-75467840 | Msa0472980:intron | 55.0% |
| !! | TGGCCTGGTGGTATTGGCTT+GGG | + | chr3_3:75467822-75467841 | Msa0472980:intron | 55.0% |
| !! | GTGGTATTGGCTTGGGACCT+TGG | + | chr3_3:75467829-75467848 | Msa0472980:intron | 55.0% |
| ! | CTTGAGAGGAGCACACTCCA+AGG | - | chr3_3:75467849-75467868 | None:intergenic | 55.0% |
| CTTGGAGTGTGCTCCTCTCA+AGG | + | chr3_3:75467847-75467866 | Msa0472980:intron | 55.0% | |
| TGTGCTCCTCTCAAGGTCTC+AGG | + | chr3_3:75467854-75467873 | Msa0472980:intron | 55.0% | |
| TTGGCGGAAACATGGCCAGA+GGG | - | chr3_3:75468679-75468698 | None:intergenic | 55.0% | |
| TTTGGCGGAAACATGGCCAG+AGG | - | chr3_3:75468680-75468699 | None:intergenic | 55.0% | |
| CCAAGTAAGCCAACCCGCAT+TGG | - | chr3_3:75469018-75469037 | None:intergenic | 55.0% | |
| !! | CCAATGCGGGTTGGCTTACT+TGG | + | chr3_3:75469015-75469034 | Msa0472980:intron | 55.0% |
| TACACCAGGACACTGGGGAT+GGG | - | chr3_3:75469541-75469560 | None:intergenic | 55.0% | |
| ATACACCAGGACACTGGGGA+TGG | - | chr3_3:75469542-75469561 | None:intergenic | 55.0% | |
| AATGGTGCGGCAAGTGGCAA+TGG | + | chr3_3:75469689-75469708 | Msa0472980:CDS | 55.0% | |
| ACGCCATAACTTCCGTCGAC+AGG | + | chr3_3:75469752-75469771 | Msa0472980:CDS | 55.0% | |
| CACTTACTGACACCTGGGAC+TGG | + | chr3_3:75471197-75471216 | Msa0472980:intron | 55.0% | |
| CTGTTGGGCCACATGCTATC+AGG | - | chr3_3:75471252-75471271 | None:intergenic | 55.0% | |
| GCATGTGGCCCAACAGATCT+TGG | + | chr3_3:75471256-75471275 | Msa0472980:intron | 55.0% | |
| ! | GTTCCTATCCTGGTTCGCTG+TGG | + | chr3_3:75471898-75471917 | Msa0472980:CDS | 55.0% |
| TGTCCACAGCGAACCAGGAT+AGG | - | chr3_3:75471904-75471923 | None:intergenic | 55.0% | |
| ACATGTGTCCACAGCGAACC+AGG | - | chr3_3:75471909-75471928 | None:intergenic | 55.0% | |
| CTGTGGACACATGTTCTGCG+AGG | + | chr3_3:75471915-75471934 | Msa0472980:CDS | 55.0% | |
| GGGTTGGACGCCTTCAGTAT+AGG | + | chr3_3:75472059-75472078 | Msa0472980:intron | 55.0% | |
| AATGTACTTGCCCGGTGTGC+AGG | + | chr3_3:75472712-75472731 | Msa0472980:CDS | 55.0% | |
| CTACCAATGTCCTGCACACC+GGG | - | chr3_3:75472725-75472744 | None:intergenic | 55.0% | |
| ! | CATCTGCGGACCTTTGGAGA+TGG | + | chr3_3:75472753-75472772 | Msa0472980:CDS | 55.0% |
| CTCTGTCCGCCGCAATAGCA+CGG | - | chr3_3:75467178-75467197 | None:intergenic | 60.0% | |
| !! | TACTCCCACTTGGGTTGGCC+TGG | + | chr3_3:75467807-75467826 | Msa0472980:intron | 60.0% |
| ACCACCAGGCCAACCCAAGT+GGG | - | chr3_3:75467814-75467833 | None:intergenic | 60.0% | |
| TACCACCAGGCCAACCCAAG+TGG | - | chr3_3:75467815-75467834 | None:intergenic | 60.0% | |
| GGTCCCAAGCCAATACCACC+AGG | - | chr3_3:75467828-75467847 | None:intergenic | 60.0% | |
| TCTTCCCATCCCCAGTGTCC+TGG | + | chr3_3:75469534-75469553 | Msa0472980:intron | 60.0% | |
| GATGGTGTGGGGACTGGGAA+GGG | + | chr3_3:75470670-75470689 | Msa0472980:intron | 60.0% | |
| TTGCCCGGTGTGCAGGACAT+TGG | + | chr3_3:75472719-75472738 | Msa0472980:CDS | 60.0% | |
| CCAAAGGTCCGCAGATGAGC+AGG | - | chr3_3:75472750-75472769 | None:intergenic | 60.0% | |
| CCTGCTCATCTGCGGACCTT+TGG | + | chr3_3:75472747-75472766 | Msa0472980:CDS | 60.0% | |
| CGAAACCGTTGCCACGTGCG+AGG | - | chr3_3:75467065-75467084 | None:intergenic | 65.0% | |
| ! | GGCTCACCGTGCTATTGCGG+CGG | + | chr3_3:75467169-75467188 | Msa0472980:CDS | 65.0% |
| !! | TCCCACTTGGGTTGGCCTGG+TGG | + | chr3_3:75467810-75467829 | Msa0472980:intron | 65.0% |
| GGATGGTGTGGGGACTGGGA+AGG | + | chr3_3:75470669-75470688 | Msa0472980:intron | 65.0% | |
| GACACCTGGGACTGGGCATC+TGG | + | chr3_3:75471205-75471224 | Msa0472980:intron | 65.0% | |
| CGCACCAGATGCCCAGTCCC+AGG | - | chr3_3:75471212-75471231 | None:intergenic | 70.0% | |
| GGGACTGGGCATCTGGTGCG+TGG | + | chr3_3:75471212-75471231 | Msa0472980:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 75467056 | 75473130 | 75467056 | ID=Msa0472980;Name=Msa0472980 |
| chr3_3 | mRNA | 75467056 | 75473130 | 75467056 | ID=Msa0472980-mRNA-1;Parent=Msa0472980;Name=Msa0472980-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0.75|0.66|1|0.75|0.66|9|324|341 |
| chr3_3 | exon | 75467056 | 75467232 | 75467056 | ID=Msa0472980-mRNA-1:exon:19551;Parent=Msa0472980-mRNA-1 |
| chr3_3 | exon | 75467278 | 75467353 | 75467278 | ID=Msa0472980-mRNA-1:exon:19552;Parent=Msa0472980-mRNA-1 |
| chr3_3 | exon | 75468361 | 75468437 | 75468361 | ID=Msa0472980-mRNA-1:exon:19553;Parent=Msa0472980-mRNA-1 |
| chr3_3 | exon | 75468578 | 75468746 | 75468578 | ID=Msa0472980-mRNA-1:exon:19554;Parent=Msa0472980-mRNA-1 |
| chr3_3 | exon | 75469685 | 75469773 | 75469685 | ID=Msa0472980-mRNA-1:exon:19555;Parent=Msa0472980-mRNA-1 |
| chr3_3 | exon | 75469870 | 75470034 | 75469870 | ID=Msa0472980-mRNA-1:exon:19556;Parent=Msa0472980-mRNA-1 |
| chr3_3 | exon | 75470140 | 75470217 | 75470140 | ID=Msa0472980-mRNA-1:exon:19557;Parent=Msa0472980-mRNA-1 |
| chr3_3 | exon | 75471850 | 75471938 | 75471850 | ID=Msa0472980-mRNA-1:exon:19558;Parent=Msa0472980-mRNA-1 |
| chr3_3 | exon | 75472701 | 75473130 | 75472701 | ID=Msa0472980-mRNA-1:exon:19559;Parent=Msa0472980-mRNA-1 |
| chr3_3 | CDS | 75467056 | 75467232 | 75467056 | ID=Msa0472980-mRNA-1:cds;Parent=Msa0472980-mRNA-1 |
| chr3_3 | CDS | 75467278 | 75467353 | 75467278 | ID=Msa0472980-mRNA-1:cds;Parent=Msa0472980-mRNA-1 |
| chr3_3 | CDS | 75468361 | 75468437 | 75468361 | ID=Msa0472980-mRNA-1:cds;Parent=Msa0472980-mRNA-1 |
| chr3_3 | CDS | 75468578 | 75468746 | 75468578 | ID=Msa0472980-mRNA-1:cds;Parent=Msa0472980-mRNA-1 |
| chr3_3 | CDS | 75469685 | 75469773 | 75469685 | ID=Msa0472980-mRNA-1:cds;Parent=Msa0472980-mRNA-1 |
| chr3_3 | CDS | 75469870 | 75470034 | 75469870 | ID=Msa0472980-mRNA-1:cds;Parent=Msa0472980-mRNA-1 |
| chr3_3 | CDS | 75470140 | 75470217 | 75470140 | ID=Msa0472980-mRNA-1:cds;Parent=Msa0472980-mRNA-1 |
| chr3_3 | CDS | 75471850 | 75471938 | 75471850 | ID=Msa0472980-mRNA-1:cds;Parent=Msa0472980-mRNA-1 |
| chr3_3 | CDS | 75472701 | 75472806 | 75472701 | ID=Msa0472980-mRNA-1:cds;Parent=Msa0472980-mRNA-1 |
| chr3_3 | three_prime_UTR | 75472807 | 75473130 | 75472807 | ID=Msa0472980-mRNA-1:three_prime_utr;Parent=Msa0472980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
