Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430650 | XP_013461747.1 | 92.133 | 661 | 33 | 2 | 1 | 660 | 1 | 643 | 0.0 | 1224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430650 | G8A2B6 | 92.133 | 661 | 33 | 2 | 1 | 660 | 1 | 643 | 0.0 | 1224 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0376910 | Msa0430650 | 0.819591 | 1.071946e-52 | -8.615850e-47 |
| Msa0430650 | Msa0471900 | 0.800864 | 1.180067e-48 | -8.615850e-47 |
| Msa0430650 | Msa1270660 | 0.804082 | 2.562675e-49 | -8.615850e-47 |
| Msa0430650 | Msa1397120 | 0.815451 | 9.183626e-52 | -8.615850e-47 |
| Msa0430650 | Msa1403890 | 0.807550 | 4.784724e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430650 | MtrunA17_Chr3g0134531 | 92.133 | 661 | 33 | 2 | 1 | 660 | 1 | 643 | 0.0 | 1224 |
| Msa0430650 | MtrunA17_Chr8g0382301 | 51.439 | 556 | 253 | 7 | 36 | 581 | 8 | 556 | 0.0 | 568 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430650 | AT5G43120.2 | 49.839 | 622 | 250 | 11 | 32 | 639 | 16 | 589 | 0.0 | 587 |
| Msa0430650 | AT5G43120.1 | 52.973 | 555 | 234 | 9 | 32 | 572 | 16 | 557 | 0.0 | 581 |
| Msa0430650 | AT5G10200.3 | 52.095 | 549 | 246 | 7 | 33 | 575 | 6 | 543 | 0.0 | 562 |
| Msa0430650 | AT5G10200.1 | 52.095 | 549 | 246 | 7 | 33 | 575 | 6 | 543 | 0.0 | 562 |
| Msa0430650 | AT5G10200.2 | 52.095 | 549 | 246 | 7 | 33 | 575 | 6 | 543 | 0.0 | 562 |
| Msa0430650 | AT3G50030.1 | 48.901 | 546 | 222 | 7 | 36 | 577 | 9 | 501 | 3.77e-172 | 501 |
Find 107 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCGAATCATATGTTTAGTT+TGG | 0.225250 | 3_2:-82563953 | Msa0430650:CDS |
| TGCAAACTCTTCTTTGTTCA+TGG | 0.227050 | 3_2:+82564866 | None:intergenic |
| TCCTAACCATCATAATTTCT+AGG | 0.236259 | 3_2:+82564049 | None:intergenic |
| CAATGTTAATATTCCACTTA+TGG | 0.243815 | 3_2:-82563533 | Msa0430650:CDS |
| ATGGATGCCACGTGGCTATT+TGG | 0.254288 | 3_2:-82563586 | Msa0430650:CDS |
| TTGCTTGCAAAGATTATAAT+AGG | 0.255145 | 3_2:-82564494 | Msa0430650:CDS |
| TTCAGGCTTGTCTACCATTA+TGG | 0.258916 | 3_2:-82562042 | Msa0430650:intron |
| ACTGGTGTTGTAAGGTGTTT+TGG | 0.288951 | 3_2:+82565226 | None:intergenic |
| ACTTATGTCAGAGGTAAAAT+TGG | 0.289376 | 3_2:-82564013 | Msa0430650:CDS |
| TATACCTTTGGTGATTAGTT+TGG | 0.292515 | 3_2:+82564965 | None:intergenic |
| TGTTAGAGCACTTGGTCATT+TGG | 0.309049 | 3_2:-82564760 | Msa0430650:CDS |
| CACACTTCACCAGGTGGGTT+TGG | 0.332768 | 3_2:-82564402 | Msa0430650:CDS |
| TGTTCTTGATTGTCTCTTTG+AGG | 0.334168 | 3_2:+82565077 | None:intergenic |
| GATCACAAGGTAGGTCTTCA+TGG | 0.336263 | 3_2:+82563461 | None:intergenic |
| GCGAATCATATGTTTAGTTT+GGG | 0.352124 | 3_2:-82563952 | Msa0430650:CDS |
| CACTTGATATTTGTCCTTTG+AGG | 0.352314 | 3_2:-82563894 | Msa0430650:CDS |
| ATGATATGAGCAGCATAATA+AGG | 0.354602 | 3_2:+82564900 | None:intergenic |
| ATACACATGGGAAAAGTCTT+TGG | 0.361121 | 3_2:-82563753 | Msa0430650:CDS |
| AACTTGCTTACAAGAGGTTT+AGG | 0.365985 | 3_2:-82564597 | Msa0430650:CDS |
| TATTATGCTGCTCATATCAT+TGG | 0.377102 | 3_2:-82564897 | Msa0430650:CDS |
| TATGATGGTTAGGAGGAATA+AGG | 0.385279 | 3_2:-82564040 | Msa0430650:CDS |
| AGGTTTAGGTGATTTAGAAA+TGG | 0.399981 | 3_2:-82564583 | Msa0430650:CDS |
| TTCTGAAAGGTAAAATAAGT+TGG | 0.407635 | 3_2:-82564800 | Msa0430650:CDS |
| GAATGATTTGTGTGATATGT+GGG | 0.409715 | 3_2:-82564439 | Msa0430650:CDS |
| CCCTAGAAATTATGATGGTT+AGG | 0.410490 | 3_2:-82564050 | Msa0430650:CDS |
| CTAGCTTCTTTAGCGTGAAA+AGG | 0.423020 | 3_2:+82562014 | None:intergenic |
| TCTCAAGATCTTGTGATGAT+TGG | 0.433372 | 3_2:-82564296 | Msa0430650:CDS |
| AAATGAGAACAAGCATGTTA+AGG | 0.434291 | 3_2:-82563644 | Msa0430650:CDS |
| AATGGCAAAAGAGAGTCTTA+TGG | 0.436401 | 3_2:-82563701 | Msa0430650:CDS |
| TGAATGATTTGTGTGATATG+TGG | 0.440051 | 3_2:-82564440 | Msa0430650:CDS |
| TTGATTATGTGGAGAGTGTT+CGG | 0.448771 | 3_2:+82565193 | None:intergenic |
| TCTGAAAGGTAAAATAAGTT+GGG | 0.449557 | 3_2:-82564799 | Msa0430650:CDS |
| GTGAAAAGGTTCTTCCATAA+TGG | 0.452456 | 3_2:+82562028 | None:intergenic |
| AGAAGCTAGTAGGAGAAAGA+TGG | 0.460748 | 3_2:-82562000 | Msa0430650:CDS |
| GCACAAATAGCTGTGAAATC+AGG | 0.464950 | 3_2:-82564846 | Msa0430650:CDS |
| AAACTCTGGATCGTTGGGTT+GGG | 0.466091 | 3_2:+82565016 | None:intergenic |
| TTTCTTCATTTGTGAATGCA+TGG | 0.471304 | 3_2:+82565274 | None:intergenic |
| TGTGATGATTGGCAATATCT+TGG | 0.472070 | 3_2:-82564285 | Msa0430650:CDS |
| ATCCTTTGCTATAATAACAT+TGG | 0.473207 | 3_2:-82564369 | Msa0430650:CDS |
| GGATTGTGAGAATGAGAATG+AGG | 0.474590 | 3_2:-82563488 | Msa0430650:CDS |
| GAAACTCTGGATCGTTGGGT+TGG | 0.484812 | 3_2:+82565015 | None:intergenic |
| TTGATTGAACTTAGAAAACT+TGG | 0.485159 | 3_2:-82564171 | Msa0430650:CDS |
| ATGCCGAGCGATGGAAACTC+TGG | 0.486251 | 3_2:+82565002 | None:intergenic |
| CGATGGAAACTCTGGATCGT+TGG | 0.487374 | 3_2:+82565010 | None:intergenic |
| GATGGAAACTCTGGATCGTT+GGG | 0.488270 | 3_2:+82565011 | None:intergenic |
| TTGTCTTCTATTGCTTCTCA+AGG | 0.491172 | 3_2:-82564256 | Msa0430650:CDS |
| TTCCAATGTTATTATAGCAA+AGG | 0.496020 | 3_2:+82564367 | None:intergenic |
| GTGTTACAAAGTTGATTATG+TGG | 0.496746 | 3_2:+82565182 | None:intergenic |
| GAATCGAAAAGCCGAGGAAT+GGG | 0.498379 | 3_2:-82564559 | Msa0430650:CDS |
| TATTTCCCTAGAAATTATGA+TGG | 0.499771 | 3_2:-82564055 | Msa0430650:CDS |
| CCTAACCATCATAATTTCTA+GGG | 0.501439 | 3_2:+82564050 | None:intergenic |
| ATATCATCACTGGTGTTGTA+AGG | 0.503056 | 3_2:+82565218 | None:intergenic |
| TGGATCGTTGGGTTGGGTCA+TGG | 0.506491 | 3_2:+82565022 | None:intergenic |
| AGAGTTGCTGTTAGAGCACT+TGG | 0.506496 | 3_2:-82564768 | Msa0430650:CDS |
| TTCACGCTAAAGAAGCTAGT+AGG | 0.506700 | 3_2:-82562010 | Msa0430650:CDS |
| GAGGTATAGAAATGAAAGAA+TGG | 0.511319 | 3_2:-82563875 | Msa0430650:CDS |
| GATTGTATAATGTTTATGAA+TGG | 0.512830 | 3_2:-82563679 | Msa0430650:CDS |
| CACAGAAACTTGCTTACAAG+AGG | 0.517598 | 3_2:-82564603 | Msa0430650:CDS |
| CTTTCATTTCTATACCTCAA+AGG | 0.530511 | 3_2:+82563880 | None:intergenic |
| GATTGTGAGAATGAGAATGA+GGG | 0.530575 | 3_2:-82563487 | Msa0430650:CDS |
| CTTGGTGATAAATCAAAGGT+TGG | 0.537751 | 3_2:-82564153 | Msa0430650:CDS |
| GGGCTAGTCAACTTCAATGT+TGG | 0.539071 | 3_2:-82564539 | Msa0430650:CDS |
| GAAGATGTTCTGCAAACAAA+TGG | 0.545926 | 3_2:-82563605 | Msa0430650:CDS |
| TAATGCTTGTTCAAAGTCAA+AGG | 0.546528 | 3_2:-82563563 | Msa0430650:CDS |
| TGATCATAAGATGATGATGA+TGG | 0.547795 | 3_2:-82563443 | Msa0430650:CDS |
| GAAAGATGGAAAGAGCAAGA+AGG | 0.549093 | 3_2:-82561986 | Msa0430650:CDS |
| AGAATCGAAAAGCCGAGGAA+TGG | 0.551577 | 3_2:-82564560 | Msa0430650:CDS |
| AAAACTTGGTGATAAATCAA+AGG | 0.553716 | 3_2:-82564157 | Msa0430650:CDS |
| CCTTTCAGAAGCTCTAACAA+TGG | 0.557086 | 3_2:+82564813 | None:intergenic |
| GAAAAGAAGAGTTTCTTGCC+AGG | 0.561773 | 3_2:-82563421 | Msa0430650:intron |
| AGCTTATGATATGAAAGGAA+TGG | 0.564044 | 3_2:-82563719 | Msa0430650:CDS |
| CAGCTGAATATGCCGAGCGA+TGG | 0.564489 | 3_2:+82564993 | None:intergenic |
| TCACAAGCTTATGATATGAA+AGG | 0.564678 | 3_2:-82563724 | Msa0430650:CDS |
| TCATATGTTTAGTTTGGGAA+AGG | 0.566935 | 3_2:-82563947 | Msa0430650:CDS |
| GCTCGGCATATTCAGCTGCA+TGG | 0.567050 | 3_2:-82564988 | Msa0430650:CDS |
| AAACACTTGCGAATTTGAAG+AGG | 0.572220 | 3_2:-82563509 | Msa0430650:CDS |
| CTAATGAGTCCAAACCCACC+TGG | 0.572281 | 3_2:+82564393 | None:intergenic |
| AGCAGAGTATGAAACAGAGT+TGG | 0.579541 | 3_2:-82564709 | Msa0430650:CDS |
| GTGTTCGGTTATATCATCAC+TGG | 0.582562 | 3_2:+82565208 | None:intergenic |
| AATGATTTGTGTGATATGTG+GGG | 0.583190 | 3_2:-82564438 | Msa0430650:CDS |
| TCATCTTATGATCACAAGGT+AGG | 0.584703 | 3_2:+82563452 | None:intergenic |
| AAGTTGACTAGCCCATTCCT+CGG | 0.587289 | 3_2:+82564548 | None:intergenic |
| GATTTGTGTGATATGTGGGG+TGG | 0.589138 | 3_2:-82564435 | Msa0430650:CDS |
| TAGAAATTATGATGGTTAGG+AGG | 0.592247 | 3_2:-82564047 | Msa0430650:CDS |
| TAGCTCTAGCACCTTTGTGA+TGG | 0.598588 | 3_2:+82564125 | None:intergenic |
| ATGGGAAAAGTCTTTGGAGA+AGG | 0.600507 | 3_2:-82563747 | Msa0430650:CDS |
| GATCCAGAGTTTCCATCGCT+CGG | 0.603856 | 3_2:-82565005 | Msa0430650:CDS |
| AATCATCACAAGATCTTGAG+AGG | 0.608909 | 3_2:+82564298 | None:intergenic |
| TAAGGAGAAACTTATGTCAG+AGG | 0.610339 | 3_2:-82564022 | Msa0430650:CDS |
| TTCTCAAGGATGAAAATACA+AGG | 0.613658 | 3_2:-82564242 | Msa0430650:CDS |
| TTGATGAATCACACTTCACC+AGG | 0.619560 | 3_2:-82564411 | Msa0430650:CDS |
| TCAAATCCAACAAATACACA+TGG | 0.625810 | 3_2:-82563766 | Msa0430650:CDS |
| CCATTGTTAGAGCTTCTGAA+AGG | 0.625813 | 3_2:-82564813 | Msa0430650:CDS |
| TCTTAGTCCTCAGTGGACTG+TGG | 0.627354 | 3_2:-82565052 | Msa0430650:CDS |
| AATGGAGAATCGAAAAGCCG+AGG | 0.634554 | 3_2:-82564565 | Msa0430650:CDS |
| ATGAATCACACTTCACCAGG+TGG | 0.638153 | 3_2:-82564408 | Msa0430650:CDS |
| TGAATCACACTTCACCAGGT+GGG | 0.644185 | 3_2:-82564407 | Msa0430650:CDS |
| ATCATCATCTTATGATCACA+AGG | 0.649283 | 3_2:+82563448 | None:intergenic |
| GAACATGTCTTAGTCCTCAG+TGG | 0.656646 | 3_2:-82565059 | Msa0430650:CDS |
| AATGCAGAAGAAACAACAAG+AGG | 0.658497 | 3_2:+82565160 | None:intergenic |
| CAAATCCAACAAATACACAT+GGG | 0.670197 | 3_2:-82563765 | Msa0430650:CDS |
| TTCAGAAGCTCTAACAATGG+CGG | 0.673207 | 3_2:+82564816 | None:intergenic |
| ATGGCCAAACTAATCACCAA+AGG | 0.679278 | 3_2:-82564969 | Msa0430650:CDS |
| GGTTGGTGATACCATCACAA+AGG | 0.705215 | 3_2:-82564136 | Msa0430650:CDS |
| GCAAACAAATGGATGCCACG+TGG | 0.733303 | 3_2:-82563594 | Msa0430650:CDS |
| CTATGTTCCACAGTCCACTG+AGG | 0.755028 | 3_2:+82565045 | None:intergenic |
| AGCATTACCAAATAGCCACG+TGG | 0.790276 | 3_2:+82563579 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAAACAATATTGTA+TGG | - | chr3_2:82564290-82564309 | Msa0430650:CDS | 10.0% |
| !! | AAAAATATAACTGAAAAATT+AGG | - | chr3_2:82564354-82564373 | Msa0430650:CDS | 10.0% |
| !!! | ATTTCATTTTTCTTTTATAA+CGG | + | chr3_2:82565038-82565057 | None:intergenic | 10.0% |
| !! | TTAAATCTAACAAAATAAAC+TGG | + | chr3_2:82563948-82563967 | None:intergenic | 15.0% |
| !! | TCTCTTTATATCTAAATTAA+TGG | + | chr3_2:82564210-82564229 | None:intergenic | 15.0% |
| !!! | AGAACATCATTTTTTTTTAA+GGG | - | chr3_2:82564227-82564246 | Msa0430650:CDS | 15.0% |
| !! | TTAAACAATGAACAATTATT+GGG | - | chr3_2:82564876-82564895 | Msa0430650:CDS | 15.0% |
| !! | CAAATATATTAATCAATAAC+AGG | + | chr3_2:82565015-82565034 | None:intergenic | 15.0% |
| !!! | GTTTTTGTTTTTTATACCTT+TGG | + | chr3_2:82562272-82562291 | None:intergenic | 20.0% |
| !! | AAGGTATAAAAAACAAAAAC+TGG | - | chr3_2:82562272-82562291 | Msa0430650:intron | 20.0% |
| !! | GATTGTATAATGTTTATGAA+TGG | - | chr3_2:82563543-82563562 | Msa0430650:CDS | 20.0% |
| !! | AATGCAAAAAAAAACATGTA+GGG | + | chr3_2:82563845-82563864 | None:intergenic | 20.0% |
| !!! | AGTAATTATTGTTTTTTGAG+AGG | - | chr3_2:82564053-82564072 | Msa0430650:CDS | 20.0% |
| !!! | GAGAACATCATTTTTTTTTA+AGG | - | chr3_2:82564226-82564245 | Msa0430650:CDS | 20.0% |
| !!! | TTTTTTTTTAAGGGATCTTT+TGG | - | chr3_2:82564236-82564255 | Msa0430650:CDS | 20.0% |
| !! | GTTAAACAATGAACAATTAT+TGG | - | chr3_2:82564875-82564894 | Msa0430650:CDS | 20.0% |
| !!! | AAGCTCATTTTAAATTTGAA+TGG | - | chr3_2:82565076-82565095 | Msa0430650:CDS | 20.0% |
| !!! | ATTTTAAATTTGAATGGCTT+TGG | - | chr3_2:82565082-82565101 | Msa0430650:CDS | 20.0% |
| !! | TTCTGAAAGGTAAAATAAGT+TGG | - | chr3_2:82562422-82562441 | Msa0430650:intron | 25.0% |
| ! | TCTGAAAGGTAAAATAAGTT+GGG | - | chr3_2:82562423-82562442 | Msa0430650:intron | 25.0% |
| ! | TTGCTTGCAAAGATTATAAT+AGG | - | chr3_2:82562728-82562747 | Msa0430650:intron | 25.0% |
| !! | ATCCTTTGCTATAATAACAT+TGG | - | chr3_2:82562853-82562872 | Msa0430650:intron | 25.0% |
| ! | TTCCAATGTTATTATAGCAA+AGG | + | chr3_2:82562858-82562877 | None:intergenic | 25.0% |
| ! | TTGATTGAACTTAGAAAACT+TGG | - | chr3_2:82563051-82563070 | Msa0430650:intron | 25.0% |
| !! | AAAACTTGGTGATAAATCAA+AGG | - | chr3_2:82563065-82563084 | Msa0430650:intron | 25.0% |
| ! | TATTTCCCTAGAAATTATGA+TGG | - | chr3_2:82563167-82563186 | Msa0430650:intron | 25.0% |
| ! | AGGTAAAATTGGAAGAAAAA+AGG | - | chr3_2:82563220-82563239 | Msa0430650:intron | 25.0% |
| ! | GGTAAAATTGGAAGAAAAAA+GGG | - | chr3_2:82563221-82563240 | Msa0430650:intron | 25.0% |
| ! | CAATGTTAATATTCCACTTA+TGG | - | chr3_2:82563689-82563708 | Msa0430650:CDS | 25.0% |
| ! | CAATGCAAAAAAAAACATGT+AGG | + | chr3_2:82563846-82563865 | None:intergenic | 25.0% |
| ! | GTTAAAACTTAAGCTAAGTT+TGG | - | chr3_2:82563922-82563941 | Msa0430650:CDS | 25.0% |
| ! | TACATTGTAGATTAGAGTAT+TGG | + | chr3_2:82564158-82564177 | None:intergenic | 25.0% |
| ! | TCTATTGTTTGAGAATTGTT+AGG | + | chr3_2:82564394-82564413 | None:intergenic | 25.0% |
| ! | AACATCCTGTCAATTATTAT+GGG | - | chr3_2:82564920-82564939 | Msa0430650:CDS | 25.0% |
| !!! | ATTATTTTGAACAACACACA+TGG | - | chr3_2:82564988-82565007 | Msa0430650:CDS | 25.0% |
| ! | GTGTTACAAAGTTGATTATG+TGG | + | chr3_2:82562043-82562062 | None:intergenic | 30.0% |
| !! | ATTTTTGCTTTTCTGAGAGA+TGG | + | chr3_2:82562103-82562122 | None:intergenic | 30.0% |
| ! | TATACCTTTGGTGATTAGTT+TGG | + | chr3_2:82562260-82562279 | None:intergenic | 30.0% |
| ATGATATGAGCAGCATAATA+AGG | + | chr3_2:82562325-82562344 | None:intergenic | 30.0% | |
| TATTATGCTGCTCATATCAT+TGG | - | chr3_2:82562325-82562344 | Msa0430650:intron | 30.0% | |
| AGGTTTAGGTGATTTAGAAA+TGG | - | chr3_2:82562639-82562658 | Msa0430650:intron | 30.0% | |
| ! | TGAATGATTTGTGTGATATG+TGG | - | chr3_2:82562782-82562801 | Msa0430650:intron | 30.0% |
| ! | GAATGATTTGTGTGATATGT+GGG | - | chr3_2:82562783-82562802 | Msa0430650:intron | 30.0% |
| ! | AATGATTTGTGTGATATGTG+GGG | - | chr3_2:82562784-82562803 | Msa0430650:intron | 30.0% |
| !! | CAAAGTGTTTTCACAACTTT+TGG | + | chr3_2:82562901-82562920 | None:intergenic | 30.0% |
| TTCTCAAGGATGAAAATACA+AGG | - | chr3_2:82562980-82562999 | Msa0430650:intron | 30.0% | |
| CCTAACCATCATAATTTCTA+GGG | + | chr3_2:82563175-82563194 | None:intergenic | 30.0% | |
| TCCTAACCATCATAATTTCT+AGG | + | chr3_2:82563176-82563195 | None:intergenic | 30.0% | |
| TAGAAATTATGATGGTTAGG+AGG | - | chr3_2:82563175-82563194 | Msa0430650:intron | 30.0% | |
| ACTTATGTCAGAGGTAAAAT+TGG | - | chr3_2:82563209-82563228 | Msa0430650:intron | 30.0% | |
| ATTGGAAGAAAAAAGGGTTA+CGG | - | chr3_2:82563227-82563246 | Msa0430650:intron | 30.0% | |
| AGCGAATCATATGTTTAGTT+TGG | - | chr3_2:82563269-82563288 | Msa0430650:intron | 30.0% | |
| ! | GCGAATCATATGTTTAGTTT+GGG | - | chr3_2:82563270-82563289 | Msa0430650:intron | 30.0% |
| !! | TCATATGTTTAGTTTGGGAA+AGG | - | chr3_2:82563275-82563294 | Msa0430650:intron | 30.0% |
| CTTTCATTTCTATACCTCAA+AGG | + | chr3_2:82563345-82563364 | None:intergenic | 30.0% | |
| GAGGTATAGAAATGAAAGAA+TGG | - | chr3_2:82563347-82563366 | Msa0430650:intron | 30.0% | |
| TCAAATCCAACAAATACACA+TGG | - | chr3_2:82563456-82563475 | Msa0430650:CDS | 30.0% | |
| CAAATCCAACAAATACACAT+GGG | - | chr3_2:82563457-82563476 | Msa0430650:CDS | 30.0% | |
| TCACAAGCTTATGATATGAA+AGG | - | chr3_2:82563498-82563517 | Msa0430650:CDS | 30.0% | |
| AGCTTATGATATGAAAGGAA+TGG | - | chr3_2:82563503-82563522 | Msa0430650:CDS | 30.0% | |
| AAATGAGAACAAGCATGTTA+AGG | - | chr3_2:82563578-82563597 | Msa0430650:CDS | 30.0% | |
| TAATGCTTGTTCAAAGTCAA+AGG | - | chr3_2:82563659-82563678 | Msa0430650:CDS | 30.0% | |
| ATCATCATCTTATGATCACA+AGG | + | chr3_2:82563777-82563796 | None:intergenic | 30.0% | |
| ! | TGATCATAAGATGATGATGA+TGG | - | chr3_2:82563779-82563798 | Msa0430650:CDS | 30.0% |
| CAAGGACTTAAATAATTACC+TGG | + | chr3_2:82563822-82563841 | None:intergenic | 30.0% | |
| AAAAAAAAACATGTAGGGCA+AGG | + | chr3_2:82563840-82563859 | None:intergenic | 30.0% | |
| AGAAATAGAGGAAAATGGAA+TGG | - | chr3_2:82564542-82564561 | Msa0430650:CDS | 30.0% | |
| GAAATAGAGGAAAATGGAAT+GGG | - | chr3_2:82564543-82564562 | Msa0430650:CDS | 30.0% | |
| ! | TGGAAAATATGATGGGAAAA+TGG | + | chr3_2:82564786-82564805 | None:intergenic | 30.0% |
| GAACATCCTGTCAATTATTA+TGG | - | chr3_2:82564919-82564938 | Msa0430650:CDS | 30.0% | |
| !! | TTGAACTTTAGAGTGTTTGT+TGG | - | chr3_2:82565116-82565135 | Msa0430650:CDS | 30.0% |
| ! | CTTTTACTGTGATCTTTTTC+AGG | - | chr3_2:82565163-82565182 | Msa0430650:CDS | 30.0% |
| !! | ATATCATCACTGGTGTTGTA+AGG | + | chr3_2:82562007-82562026 | None:intergenic | 35.0% |
| !! | TTGATTATGTGGAGAGTGTT+CGG | + | chr3_2:82562032-82562051 | None:intergenic | 35.0% |
| AATGCAGAAGAAACAACAAG+AGG | + | chr3_2:82562065-82562084 | None:intergenic | 35.0% | |
| TGTTCTTGATTGTCTCTTTG+AGG | + | chr3_2:82562148-82562167 | None:intergenic | 35.0% | |
| TGCAAACTCTTCTTTGTTCA+TGG | + | chr3_2:82562359-82562378 | None:intergenic | 35.0% | |
| ! | TAGTTACAGTAGCACTTTTG+AGG | - | chr3_2:82562486-82562505 | Msa0430650:intron | 35.0% |
| ! | AACTTGCTTACAAGAGGTTT+AGG | - | chr3_2:82562625-82562644 | Msa0430650:intron | 35.0% |
| AATCATCACAAGATCTTGAG+AGG | + | chr3_2:82562927-82562946 | None:intergenic | 35.0% | |
| TCTCAAGATCTTGTGATGAT+TGG | - | chr3_2:82562926-82562945 | Msa0430650:intron | 35.0% | |
| TGTGATGATTGGCAATATCT+TGG | - | chr3_2:82562937-82562956 | Msa0430650:intron | 35.0% | |
| TTGTCTTCTATTGCTTCTCA+AGG | - | chr3_2:82562966-82562985 | Msa0430650:intron | 35.0% | |
| ! | CTTGGTGATAAATCAAAGGT+TGG | - | chr3_2:82563069-82563088 | Msa0430650:intron | 35.0% |
| CCCTAGAAATTATGATGGTT+AGG | - | chr3_2:82563172-82563191 | Msa0430650:intron | 35.0% | |
| TATGATGGTTAGGAGGAATA+AGG | - | chr3_2:82563182-82563201 | Msa0430650:intron | 35.0% | |
| TAAGGAGAAACTTATGTCAG+AGG | - | chr3_2:82563200-82563219 | Msa0430650:intron | 35.0% | |
| CACTTGATATTTGTCCTTTG+AGG | - | chr3_2:82563328-82563347 | Msa0430650:intron | 35.0% | |
| ! | CTTTTCCCATGTGTATTTGT+TGG | + | chr3_2:82563465-82563484 | None:intergenic | 35.0% |
| ATACACATGGGAAAAGTCTT+TGG | - | chr3_2:82563469-82563488 | Msa0430650:CDS | 35.0% | |
| AATGGCAAAAGAGAGTCTTA+TGG | - | chr3_2:82563521-82563540 | Msa0430650:CDS | 35.0% | |
| GAAGATGTTCTGCAAACAAA+TGG | - | chr3_2:82563617-82563636 | Msa0430650:CDS | 35.0% | |
| AAACACTTGCGAATTTGAAG+AGG | - | chr3_2:82563713-82563732 | Msa0430650:CDS | 35.0% | |
| GATTGTGAGAATGAGAATGA+GGG | - | chr3_2:82563735-82563754 | Msa0430650:CDS | 35.0% | |
| TCATCTTATGATCACAAGGT+AGG | + | chr3_2:82563773-82563792 | None:intergenic | 35.0% | |
| !! | TAAGGGATCTTTTGGAAAAG+TGG | - | chr3_2:82564244-82564263 | Msa0430650:CDS | 35.0% |
| ACTCAGGTCTAACAACTTTA+AGG | - | chr3_2:82564454-82564473 | Msa0430650:CDS | 35.0% | |
| TTGAGAAAAAAGGAATGAGC+TGG | - | chr3_2:82564515-82564534 | Msa0430650:CDS | 35.0% | |
| GTGGAAGAAATAGAGGAAAA+TGG | - | chr3_2:82564537-82564556 | Msa0430650:CDS | 35.0% | |
| TGGGAACTAACAAAGTGTAT+TGG | - | chr3_2:82564618-82564637 | Msa0430650:CDS | 35.0% | |
| GAACTAACAAAGTGTATTGG+AGG | - | chr3_2:82564621-82564640 | Msa0430650:CDS | 35.0% | |
| ! | ACTTTGTTTGCGAGTTTGAA+GGG | + | chr3_2:82564834-82564853 | None:intergenic | 35.0% |
| AAGCACCCATAATAATTGAC+AGG | + | chr3_2:82564928-82564947 | None:intergenic | 35.0% | |
| GTGAAAAGGTTCTTCCATAA+TGG | + | chr3_2:82565197-82565216 | None:intergenic | 35.0% | |
| !!! | CTGGTGTTGTAAGGTGTTTT+GGG | + | chr3_2:82561998-82562017 | None:intergenic | 40.0% |
| !!! | ACTGGTGTTGTAAGGTGTTT+TGG | + | chr3_2:82561999-82562018 | None:intergenic | 40.0% |
| GTGTTCGGTTATATCATCAC+TGG | + | chr3_2:82562017-82562036 | None:intergenic | 40.0% | |
| ATGGCCAAACTAATCACCAA+AGG | - | chr3_2:82562253-82562272 | Msa0430650:intron | 40.0% | |
| GCACAAATAGCTGTGAAATC+AGG | - | chr3_2:82562376-82562395 | Msa0430650:intron | 40.0% | |
| ! | TTCAGAAGCTCTAACAATGG+CGG | + | chr3_2:82562409-82562428 | None:intergenic | 40.0% |
| ! | CCTTTCAGAAGCTCTAACAA+TGG | + | chr3_2:82562412-82562431 | None:intergenic | 40.0% |
| CCATTGTTAGAGCTTCTGAA+AGG | - | chr3_2:82562409-82562428 | Msa0430650:intron | 40.0% | |
| ! | TGTTAGAGCACTTGGTCATT+TGG | - | chr3_2:82562462-82562481 | Msa0430650:intron | 40.0% |
| AGCAGAGTATGAAACAGAGT+TGG | - | chr3_2:82562513-82562532 | Msa0430650:intron | 40.0% | |
| ! | CACAGAAACTTGCTTACAAG+AGG | - | chr3_2:82562619-82562638 | Msa0430650:intron | 40.0% |
| TTGATGAATCACACTTCACC+AGG | - | chr3_2:82562811-82562830 | Msa0430650:intron | 40.0% | |
| ! | ATGGGAAAAGTCTTTGGAGA+AGG | - | chr3_2:82563475-82563494 | Msa0430650:CDS | 40.0% |
| ! | TCGCAAGTGTTTTCCATAAG+TGG | + | chr3_2:82563705-82563724 | None:intergenic | 40.0% |
| GGATTGTGAGAATGAGAATG+AGG | - | chr3_2:82563734-82563753 | Msa0430650:CDS | 40.0% | |
| GAAAAGAAGAGTTTCTTGCC+AGG | - | chr3_2:82563801-82563820 | Msa0430650:CDS | 40.0% | |
| TTGTTAGACCTGAGTGCAAT+GGG | + | chr3_2:82564449-82564468 | None:intergenic | 40.0% | |
| ! | TAAGGCTTTGATTGCGAGTT+TGG | - | chr3_2:82564472-82564491 | Msa0430650:CDS | 40.0% |
| AGAAAAAAGGAATGAGCTGG+TGG | - | chr3_2:82564518-82564537 | Msa0430650:CDS | 40.0% | |
| GAAAATGGAATGGGAGAGAA+GGG | - | chr3_2:82564552-82564571 | Msa0430650:CDS | 40.0% | |
| ! | ATACTAAACCCTCCTCGTTT+TGG | - | chr3_2:82564598-82564617 | Msa0430650:CDS | 40.0% |
| ! | TACTAAACCCTCCTCGTTTT+GGG | - | chr3_2:82564599-82564618 | Msa0430650:CDS | 40.0% |
| CTTTGTTAGTTCCCAAAACG+AGG | + | chr3_2:82564613-82564632 | None:intergenic | 40.0% | |
| CTAACAAAGTGTATTGGAGG+AGG | - | chr3_2:82564624-82564643 | Msa0430650:CDS | 40.0% | |
| TGAGGGGTGGAAAATATGAT+GGG | + | chr3_2:82564793-82564812 | None:intergenic | 40.0% | |
| TTGAGGGGTGGAAAATATGA+TGG | + | chr3_2:82564794-82564813 | None:intergenic | 40.0% | |
| ! | AGGGAAAGAGAAAGCTTTGA+GGG | + | chr3_2:82564810-82564829 | None:intergenic | 40.0% |
| ! | CTTTGTTTGCGAGTTTGAAG+GGG | + | chr3_2:82564833-82564852 | None:intergenic | 40.0% |
| ! | GACTTTGTTTGCGAGTTTGA+AGG | + | chr3_2:82564835-82564854 | None:intergenic | 40.0% |
| CAAACTCGCAAACAAAGTCT+AGG | - | chr3_2:82564836-82564855 | Msa0430650:CDS | 40.0% | |
| GGTATGTATTCTTTGTTGCG+AGG | - | chr3_2:82564897-82564916 | Msa0430650:CDS | 40.0% | |
| ! | AGTGTTTGTTGGCTAAGCAA+GGG | - | chr3_2:82565127-82565146 | Msa0430650:CDS | 40.0% |
| TTCAGGCTTGTCTACCATTA+TGG | - | chr3_2:82565180-82565199 | Msa0430650:CDS | 40.0% | |
| CTAGCTTCTTTAGCGTGAAA+AGG | + | chr3_2:82565211-82565230 | None:intergenic | 40.0% | |
| TTCACGCTAAAGAAGCTAGT+AGG | - | chr3_2:82565212-82565231 | Msa0430650:CDS | 40.0% | |
| AGAAGCTAGTAGGAGAAAGA+TGG | - | chr3_2:82565222-82565241 | Msa0430650:CDS | 40.0% | |
| GAAAGATGGAAAGAGCAAGA+AGG | - | chr3_2:82565236-82565255 | Msa0430650:CDS | 40.0% | |
| GAACATGTCTTAGTCCTCAG+TGG | - | chr3_2:82562163-82562182 | Msa0430650:intron | 45.0% | |
| AAACTCTGGATCGTTGGGTT+GGG | + | chr3_2:82562209-82562228 | None:intergenic | 45.0% | |
| GATGGAAACTCTGGATCGTT+GGG | + | chr3_2:82562214-82562233 | None:intergenic | 45.0% | |
| ! | AGAGTTGCTGTTAGAGCACT+TGG | - | chr3_2:82562454-82562473 | Msa0430650:intron | 45.0% |
| AATGGAGAATCGAAAAGCCG+AGG | - | chr3_2:82562657-82562676 | Msa0430650:intron | 45.0% | |
| AGAATCGAAAAGCCGAGGAA+TGG | - | chr3_2:82562662-82562681 | Msa0430650:intron | 45.0% | |
| GAATCGAAAAGCCGAGGAAT+GGG | - | chr3_2:82562663-82562682 | Msa0430650:intron | 45.0% | |
| ! | AAGTTGACTAGCCCATTCCT+CGG | + | chr3_2:82562677-82562696 | None:intergenic | 45.0% |
| !! | GGGCTAGTCAACTTCAATGT+TGG | - | chr3_2:82562683-82562702 | Msa0430650:intron | 45.0% |
| GATTTGTGTGATATGTGGGG+TGG | - | chr3_2:82562787-82562806 | Msa0430650:intron | 45.0% | |
| ATGAATCACACTTCACCAGG+TGG | - | chr3_2:82562814-82562833 | Msa0430650:intron | 45.0% | |
| TGAATCACACTTCACCAGGT+GGG | - | chr3_2:82562815-82562834 | Msa0430650:intron | 45.0% | |
| !! | GGTTGGTGATACCATCACAA+AGG | - | chr3_2:82563086-82563105 | Msa0430650:intron | 45.0% |
| !! | TAGCTCTAGCACCTTTGTGA+TGG | + | chr3_2:82563100-82563119 | None:intergenic | 45.0% |
| AGCATTACCAAATAGCCACG+TGG | + | chr3_2:82563646-82563665 | None:intergenic | 45.0% | |
| GATCACAAGGTAGGTCTTCA+TGG | + | chr3_2:82563764-82563783 | None:intergenic | 45.0% | |
| GAGAATTGTTAGGCTCAGTC+TGG | + | chr3_2:82564384-82564403 | None:intergenic | 45.0% | |
| CAATTAGACCCATTGCACTC+AGG | - | chr3_2:82564438-82564457 | Msa0430650:CDS | 45.0% | |
| GTTGTTAGACCTGAGTGCAA+TGG | + | chr3_2:82564450-82564469 | None:intergenic | 45.0% | |
| GCTTTGATTGCGAGTTTGGA+GGG | - | chr3_2:82564476-82564495 | Msa0430650:CDS | 45.0% | |
| AGGGGAAGGCTTGAGAAAAA+AGG | - | chr3_2:82564505-82564524 | Msa0430650:CDS | 45.0% | |
| TGAGCTGGTGGAAGAAATAG+AGG | - | chr3_2:82564530-82564549 | Msa0430650:CDS | 45.0% | |
| GGAAAATGGAATGGGAGAGA+AGG | - | chr3_2:82564551-82564570 | Msa0430650:CDS | 45.0% | |
| ! | GAATGGGAGAGAAGGGTTTT+GGG | - | chr3_2:82564559-82564578 | Msa0430650:CDS | 45.0% |
| ! | AATGGGAGAGAAGGGTTTTG+GGG | - | chr3_2:82564560-82564579 | Msa0430650:CDS | 45.0% |
| GTTAGTTCCCAAAACGAGGA+GGG | + | chr3_2:82564609-82564628 | None:intergenic | 45.0% | |
| TGTTAGTTCCCAAAACGAGG+AGG | + | chr3_2:82564610-82564629 | None:intergenic | 45.0% | |
| !! | AAAGAGAAAGCTTTGAGGGG+TGG | + | chr3_2:82564806-82564825 | None:intergenic | 45.0% |
| !! | GGGAAAGAGAAAGCTTTGAG+GGG | + | chr3_2:82564809-82564828 | None:intergenic | 45.0% |
| GAGGGAAAGAGAAAGCTTTG+AGG | + | chr3_2:82564811-82564830 | None:intergenic | 45.0% | |
| CGCAAACAAAGTCTAGGCTA+AGG | - | chr3_2:82564842-82564861 | Msa0430650:CDS | 45.0% | |
| ! | GAGTGTTTGTTGGCTAAGCA+AGG | - | chr3_2:82565126-82565145 | Msa0430650:CDS | 45.0% |
| !!! | ATTGTTTTATTTTTAAAAAA+AGG | + | chr3_2:82564284-82564303 | None:intergenic | 5.0% |
| !! | TCTTAGTCCTCAGTGGACTG+TGG | - | chr3_2:82562170-82562189 | Msa0430650:intron | 50.0% |
| CTATGTTCCACAGTCCACTG+AGG | + | chr3_2:82562180-82562199 | None:intergenic | 50.0% | |
| GAAACTCTGGATCGTTGGGT+TGG | + | chr3_2:82562210-82562229 | None:intergenic | 50.0% | |
| CGATGGAAACTCTGGATCGT+TGG | + | chr3_2:82562215-82562234 | None:intergenic | 50.0% | |
| GATCCAGAGTTTCCATCGCT+CGG | - | chr3_2:82562217-82562236 | Msa0430650:intron | 50.0% | |
| CTAATGAGTCCAAACCCACC+TGG | + | chr3_2:82562832-82562851 | None:intergenic | 50.0% | |
| GCAAACAAATGGATGCCACG+TGG | - | chr3_2:82563628-82563647 | Msa0430650:CDS | 50.0% | |
| ATGGATGCCACGTGGCTATT+TGG | - | chr3_2:82563636-82563655 | Msa0430650:CDS | 50.0% | |
| ! | GGCTTTGATTGCGAGTTTGG+AGG | - | chr3_2:82564475-82564494 | Msa0430650:CDS | 50.0% |
| ATTGCGAGTTTGGAGGGCAA+TGG | - | chr3_2:82564482-82564501 | Msa0430650:CDS | 50.0% | |
| ! | GGAATGGGAGAGAAGGGTTT+TGG | - | chr3_2:82564558-82564577 | Msa0430650:CDS | 50.0% |
| !! | ATGGGAGAGAAGGGTTTTGG+GGG | - | chr3_2:82564561-82564580 | Msa0430650:CDS | 50.0% |
| GTTTGCGAGTTTGAAGGGGA+GGG | + | chr3_2:82564829-82564848 | None:intergenic | 50.0% | |
| TGTTTGCGAGTTTGAAGGGG+AGG | + | chr3_2:82564830-82564849 | None:intergenic | 50.0% | |
| !! | TGGATCGTTGGGTTGGGTCA+TGG | + | chr3_2:82562203-82562222 | None:intergenic | 55.0% |
| ATGCCGAGCGATGGAAACTC+TGG | + | chr3_2:82562223-82562242 | None:intergenic | 55.0% | |
| CAGCTGAATATGCCGAGCGA+TGG | + | chr3_2:82562232-82562251 | None:intergenic | 55.0% | |
| GCTCGGCATATTCAGCTGCA+TGG | - | chr3_2:82562234-82562253 | Msa0430650:intron | 55.0% | |
| ! | CACACTTCACCAGGTGGGTT+TGG | - | chr3_2:82562820-82562839 | Msa0430650:intron | 55.0% |
| CGAGTTTGGAGGGCAATGGA+GGG | - | chr3_2:82564486-82564505 | Msa0430650:CDS | 55.0% | |
| GAGTTTGGAGGGCAATGGAG+GGG | - | chr3_2:82564487-82564506 | Msa0430650:CDS | 55.0% | |
| !!! | TGGGAGAGAAGGGTTTTGGG+GGG | - | chr3_2:82564562-82564581 | Msa0430650:CDS | 55.0% |
| GCGAGTTTGGAGGGCAATGG+AGG | - | chr3_2:82564485-82564504 | Msa0430650:CDS | 60.0% | |
| TTGGAGGGCAATGGAGGGGA+AGG | - | chr3_2:82564491-82564510 | Msa0430650:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 82561950 | 82565294 | 82561950 | ID=Msa0430650;Name=Msa0430650 |
| chr3_2 | mRNA | 82561950 | 82565294 | 82561950 | ID=Msa0430650-mRNA-1;Parent=Msa0430650;Name=Msa0430650-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|0.5|1|1|2|0|660 |
| chr3_2 | exon | 82563422 | 82565294 | 82563422 | ID=Msa0430650-mRNA-1:exon:22939;Parent=Msa0430650-mRNA-1 |
| chr3_2 | exon | 82561950 | 82562059 | 82561950 | ID=Msa0430650-mRNA-1:exon:22938;Parent=Msa0430650-mRNA-1 |
| chr3_2 | CDS | 82563422 | 82565294 | 82563422 | ID=Msa0430650-mRNA-1:cds;Parent=Msa0430650-mRNA-1 |
| chr3_2 | CDS | 82561950 | 82562059 | 82561950 | ID=Msa0430650-mRNA-1:cds;Parent=Msa0430650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
