AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1403890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1403890 MtrunA17_Chr3g0127511 98.367 245 4 0 1 245 1 245 0.0 496
Msa1403890 MtrunA17_Chr8g0346251 43.750 208 109 4 42 245 45 248 4.59e-48 159
Msa1403890 MtrunA17_Chr6g0450991 45.185 135 63 2 7 130 25 159 3.06e-30 114
Msa1403890 MtrunA17_Chr4g0060031 56.122 98 43 0 37 134 94 191 3.69e-29 112
Msa1403890 MtrunA17_Chr6g0453021 56.383 94 41 0 37 130 95 188 6.52e-29 110
Msa1403890 MtrunA17_Chr8g0362151 54.255 94 43 0 37 130 76 169 3.51e-28 108
Msa1403890 MtrunA17_Chr5g0415941 55.435 92 41 0 39 130 88 179 1.59e-26 104
Msa1403890 MtrunA17_Chr8g0381741 55.435 92 41 0 39 130 55 146 1.94e-26 104
Msa1403890 MtrunA17_Chr5g0416391 54.255 94 43 0 37 130 76 169 2.40e-26 103
Msa1403890 MtrunA17_Chr1g0179581 51.648 91 37 1 37 127 27 110 4.49e-26 98.2
Msa1403890 MtrunA17_Chr3g0123691 51.064 94 46 0 37 130 59 152 5.10e-26 103
Msa1403890 MtrunA17_Chr7g0265521 40.690 145 58 4 37 160 62 199 2.62e-25 99.8
Msa1403890 MtrunA17_Chr8g0362751 54.348 92 42 0 39 130 90 181 4.10e-25 100
Msa1403890 MtrunA17_Chr3g0119291 49.474 95 48 0 36 130 57 151 7.50e-25 99.0
Msa1403890 MtrunA17_Chr7g0217111 47.826 92 48 0 39 130 81 172 2.52e-21 89.7
Msa1403890 MtrunA17_Chr5g0403701 47.368 114 46 2 31 130 39 152 4.47e-21 87.8
Msa1403890 MtrunA17_Chr5g0403691 52.577 97 38 2 31 120 39 134 1.39e-19 84.3
Msa1403890 MtrunA17_Chr4g0055851 44.211 95 46 1 39 133 121 208 7.53e-14 69.3
Msa1403890 MtrunA17_Chr7g0258831 41.584 101 52 1 33 133 155 248 7.30e-13 66.6
Msa1403890 MtrunA17_Chr4g0071411 42.857 84 48 0 41 124 91 174 1.38e-12 65.1
Msa1403890 MtrunA17_Chr4g0054421 43.158 95 47 1 39 133 128 215 2.25e-12 65.1
Msa1403890 MtrunA17_Chr5g0400781 43.750 96 53 1 39 133 124 219 3.99e-12 64.3
Msa1403890 MtrunA17_Chr1g0151971 43.158 95 47 1 39 133 131 218 6.66e-12 63.9
Msa1403890 MtrunA17_Chr1g0175651 39.423 104 56 1 33 136 149 245 1.10e-11 63.5
Msa1403890 MtrunA17_Chr3g0135331 45.333 75 41 0 36 110 143 217 1.23e-11 63.2
Msa1403890 MtrunA17_Chr8g0335131 42.105 95 48 1 39 133 147 234 1.57e-11 63.2
Msa1403890 MtrunA17_Chr2g0308611 40.000 95 50 1 39 133 201 288 5.74e-11 61.6
Msa1403890 MtrunA17_Chr5g0399491 41.053 95 49 1 39 133 137 224 6.81e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1403890 AT2G46680.1 42.324 241 118 5 25 245 19 258 2.05e-45 152
Msa1403890 AT2G46680.2 43.162 234 114 5 30 245 24 256 2.21e-44 150
Msa1403890 AT3G61890.1 68.132 91 29 0 41 131 33 123 2.06e-38 134
Msa1403890 AT3G01470.1 43.382 136 77 0 37 172 67 202 1.17e-29 112
Msa1403890 AT2G22430.1 56.383 94 41 0 37 130 61 154 5.01e-29 111
Msa1403890 AT4G40060.1 52.041 98 47 0 37 134 58 155 2.19e-28 109
Msa1403890 AT1G69780.1 54.255 94 43 0 37 130 84 177 9.16e-28 107
Msa1403890 AT5G15150.1 53.191 94 44 0 37 130 114 207 3.58e-26 103
Msa1403890 AT2G18550.1 50.943 106 45 1 39 137 62 167 8.47e-26 100
Msa1403890 AT5G65310.2 51.064 94 46 0 37 130 53 146 2.96e-25 101
Msa1403890 AT5G65310.1 51.064 94 46 0 37 130 71 164 3.79e-25 101
Msa1403890 AT4G36740.2 42.647 136 61 2 17 135 25 160 9.48e-25 98.2
Msa1403890 AT5G66700.1 51.000 100 42 1 39 131 72 171 1.35e-24 98.2
Msa1403890 AT4G36740.1 50.962 104 44 1 39 135 56 159 1.37e-24 97.8
Msa1403890 AT3G01220.1 48.936 94 48 0 37 130 86 179 9.14e-24 97.1
Msa1403890 AT5G03790.1 43.478 115 54 2 20 134 63 166 1.89e-23 95.1
Msa1403890 AT1G26960.1 42.969 128 65 2 11 130 36 163 1.74e-22 93.2
Msa1403890 AT5G03790.2 46.000 100 50 1 20 119 63 158 7.86e-22 89.7
Msa1403890 AT1G27045.4 40.299 134 74 2 9 138 35 166 4.64e-21 89.4
Msa1403890 AT1G27045.1 39.683 126 72 1 9 130 35 160 5.61e-20 85.9
Msa1403890 AT1G27045.5 45.361 97 53 0 34 130 21 117 6.12e-20 84.7
Msa1403890 AT1G27045.3 45.361 97 53 0 34 130 21 117 6.12e-20 84.7
Msa1403890 AT1G27045.2 45.361 97 53 0 34 130 13 109 8.34e-20 84.0
Msa1403890 AT2G36610.1 42.308 104 45 2 39 134 72 168 2.64e-19 82.8
Msa1403890 AT5G53980.1 39.604 101 57 1 29 129 6 102 1.44e-15 72.0
Msa1403890 AT2G44910.1 42.000 100 51 1 39 138 164 256 1.48e-12 66.6
Msa1403890 AT3G60390.1 42.000 100 51 1 39 138 163 255 3.56e-12 65.5
Msa1403890 AT2G22800.1 42.105 95 48 1 39 133 114 201 1.11e-11 63.5
Msa1403890 AT5G06710.1 41.837 98 50 1 33 130 185 275 1.39e-11 63.9
Msa1403890 AT4G16780.1 42.105 95 48 1 39 133 130 217 5.94e-11 61.6
Msa1403890 AT4G37790.1 41.053 95 49 1 39 133 127 214 8.45e-11 61.2
Msa1403890 AT2G01430.1 42.105 95 48 1 39 133 140 227 8.84e-11 60.8

Find 64 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGGTGTTTCCTTGAAAA+AGG 0.186239 tig0022984:+35301 Msa1403890:three_prime_UTR
GGTTATTTGTATCACGTTAT+TGG 0.199319 tig0022984:-34120 None:intergenic
TTCCTCCATCATATTATATA+TGG 0.262604 tig0022984:-34267 None:intergenic
AATTCATTTGTTTAGAGATT+TGG 0.291509 tig0022984:+35432 Msa1403890:three_prime_UTR
TTCTTCTATGTTGCAATGTT+TGG 0.317476 tig0022984:+35284 Msa1403890:three_prime_UTR
AGCCTAGACAAGTTGCTATA+TGG 0.329458 tig0022984:+34501 Msa1403890:CDS
GCAAGTTGCATCTTCTTCCT+TGG 0.339735 tig0022984:-34461 None:intergenic
TGAGGGTTTGGAGGATAAAA+TGG 0.360194 tig0022984:+35048 Msa1403890:CDS
AGCACAGAAGATGGTGGTTC+AGG 0.365057 tig0022984:+34974 Msa1403890:CDS
GGTTCAGAAGCTAAGTTATA+TGG 0.367405 tig0022984:+34910 Msa1403890:intron
GAAGATGGTGGTTCAGGAAA+TGG 0.372815 tig0022984:+34980 Msa1403890:CDS
GAAATGGATACAACAATTGC+AGG 0.379643 tig0022984:+34996 Msa1403890:CDS
ATGCAACTTGCAAGAGATCT+TGG 0.385707 tig0022984:+34473 Msa1403890:CDS
TTTAGAGATTTGGAAGAAGA+AGG 0.390617 tig0022984:+35442 Msa1403890:three_prime_UTR
TTCTAAGTTTCAGTGCCTTA+AGG 0.396105 tig0022984:+34607 Msa1403890:CDS
AAGACTCTTTCTCTTCCTTA+AGG 0.407960 tig0022984:-34622 None:intergenic
TAAAGTTATAAAACTAGAAA+TGG 0.413285 tig0022984:-35553 None:intergenic
CACGTTATTGGAACTTGTAA+AGG 0.438226 tig0022984:-34108 None:intergenic
GGAAGGATCATAGTGACTTA+TGG 0.449172 tig0022984:-34087 None:intergenic
TGATGAACAGATAAGATCAT+TGG 0.455417 tig0022984:+34406 Msa1403890:CDS
AAAATTCAAAACTTAGGCCT+TGG 0.467576 tig0022984:+34244 Msa1403890:five_prime_UTR
GTTCAAAACATGCAAGTTCA+AGG 0.470409 tig0022984:+35335 Msa1403890:three_prime_UTR
ATGCAATAGTTCTCAATGGT+TGG 0.475551 tig0022984:+35234 Msa1403890:CDS
AATATTCATGAAGGGTTCAA+AGG 0.493550 tig0022984:+34296 Msa1403890:CDS
ATCACACTGACACAAGCAAA+TGG 0.497713 tig0022984:-35522 None:intergenic
GAAGAAGAGAATATTCATGA+AGG 0.503417 tig0022984:+34287 Msa1403890:CDS
CACAAGCAAATGGATGGAAA+AGG 0.514463 tig0022984:-35512 None:intergenic
CAGAATCAAAGTTGGAGCCA+AGG 0.518559 tig0022984:+34444 Msa1403890:CDS
ATTTGAGTCAGAATCAAAGT+TGG 0.518777 tig0022984:+34436 Msa1403890:CDS
AAAAGATTAAAATTTGGTGA+GGG 0.520087 tig0022984:-34189 None:intergenic
AAGGAAAATAGCACAGAAGA+TGG 0.540540 tig0022984:+34965 Msa1403890:CDS
GAAAGAGTCTTTGCAATCAG+AGG 0.541327 tig0022984:+34634 Msa1403890:CDS
CACTGACACAAGCAAATGGA+TGG 0.547485 tig0022984:-35518 None:intergenic
AAGATTAAAATTTGGTGAGG+GGG 0.552758 tig0022984:-34187 None:intergenic
AATCATGCAATAGTTCTCAA+TGG 0.553811 tig0022984:+35230 Msa1403890:CDS
CTTGGCCATATATAATATGA+TGG 0.568051 tig0022984:+34262 Msa1403890:exon
GATCATTGTAACATATGACT+TGG 0.568054 tig0022984:+35599 Msa1403890:three_prime_UTR
AGAAGATAGAAAACAAGAGA+AGG 0.569555 tig0022984:+34378 Msa1403890:CDS
AAACATCGCATGATGGAGGA+AGG 0.574577 tig0022984:+34936 Msa1403890:CDS
AACCATATAGCAACTTGTCT+AGG 0.580258 tig0022984:-34503 None:intergenic
CATCATATTATATATGGCCA+AGG 0.582674 tig0022984:-34261 None:intergenic
AAAGATTAAAATTTGGTGAG+GGG 0.584079 tig0022984:-34188 None:intergenic
AAGAAGAGAATATTCATGAA+GGG 0.590509 tig0022984:+34288 Msa1403890:CDS
TTCAGAACAGAAGAGCAAGA+TGG 0.602218 tig0022984:+34525 Msa1403890:CDS
CTAAACAAATGAATTAAGAG+AGG 0.605271 tig0022984:-35424 None:intergenic
TGATGGAGGAAGGGAAGCTA+AGG 0.606332 tig0022984:+34946 Msa1403890:CDS
TTATTGGAACTTGTAAAGGA+AGG 0.615756 tig0022984:-34104 None:intergenic
TCAGAAGCTAAGTTATATGG+TGG 0.615960 tig0022984:+34913 Msa1403890:CDS
ATGGTGGAAACATCGCATGA+TGG 0.617224 tig0022984:+34929 Msa1403890:CDS
CATTGCAACATAGAAGAACA+TGG 0.626691 tig0022984:-35279 None:intergenic
AACATCGCATGATGGAGGAA+GGG 0.628539 tig0022984:+34937 Msa1403890:CDS
GTGGAAACATCGCATGATGG+AGG 0.645127 tig0022984:+34932 Msa1403890:CDS
GGCCATATATAATATGATGG+AGG 0.645919 tig0022984:+34265 Msa1403890:exon
GAGCAAGATGGAAATCAAAG+AGG 0.650346 tig0022984:+34537 Msa1403890:CDS
GACTTGGACTCACATAACAT+AGG 0.662360 tig0022984:+35615 Msa1403890:three_prime_UTR
GATTGATCTAACATACCACA+TGG 0.663576 tig0022984:-35211 None:intergenic
GAAAATAGCACAGAAGATGG+TGG 0.663671 tig0022984:+34968 Msa1403890:CDS
AAAATGAAAGAAGCACAACA+TGG 0.668449 tig0022984:+35089 Msa1403890:CDS
ACAGAGAAAATTGAGGACAG+AGG 0.671559 tig0022984:+35112 Msa1403890:CDS
AATGATCATACAAATAAACA+AGG 0.699783 tig0022984:-35583 None:intergenic
GATCATACAAATAAACAAGG+TGG 0.701047 tig0022984:-35580 None:intergenic
AACATGGACAGAGAAAATTG+AGG 0.710156 tig0022984:+35105 Msa1403890:CDS
TGGTACAATGTTGATCCATG+TGG 0.723453 tig0022984:+35196 Msa1403890:CDS
TTATGGTACTAGAAAACGTG+TGG 0.745063 tig0022984:-34070 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGTTATAAAACTAGAAA+TGG - tig0022984:35556-35575 None:intergenic 15.0%
!! TAAAGTTATAAAACTAGAAA+TGG - tig0022984:35556-35575 None:intergenic 15.0%
!!! AAAAGATTAAAATTTGGTGA+GGG - tig0022984:34192-34211 None:intergenic 20.0%
!!! AAAAAGATTAAAATTTGGTG+AGG - tig0022984:34193-34212 None:intergenic 20.0%
!!! TTTGAATTTTTGGAATTTGA+AGG - tig0022984:34234-34253 None:intergenic 20.0%
!! ATTCCAAAAATTCAAAACTT+AGG + tig0022984:34238-34257 Msa1403890:five_prime_UTR 20.0%
!! TTAGGAAAAAAAAATTCACA+GGG - tig0022984:34888-34907 None:intergenic 20.0%
!!! TCAAAAAAATGAAGTTTTGT+AGG + tig0022984:35371-35390 Msa1403890:three_prime_UTR 20.0%
!! AATTCATTTGTTTAGAGATT+TGG + tig0022984:35432-35451 Msa1403890:three_prime_UTR 20.0%
!! AATGATCATACAAATAAACA+AGG - tig0022984:35586-35605 None:intergenic 20.0%
!!! AAAAGATTAAAATTTGGTGA+GGG - tig0022984:34192-34211 None:intergenic 20.0%
!!! AAAAAGATTAAAATTTGGTG+AGG - tig0022984:34193-34212 None:intergenic 20.0%
!!! TTTGAATTTTTGGAATTTGA+AGG - tig0022984:34234-34253 None:intergenic 20.0%
!! ATTCCAAAAATTCAAAACTT+AGG + tig0022984:34238-34257 Msa1403890:five_prime_UTR 20.0%
!! TTAGGAAAAAAAAATTCACA+GGG - tig0022984:34888-34907 None:intergenic 20.0%
!!! TCAAAAAAATGAAGTTTTGT+AGG + tig0022984:35371-35390 Msa1403890:three_prime_UTR 20.0%
!! AATTCATTTGTTTAGAGATT+TGG + tig0022984:35432-35451 Msa1403890:three_prime_UTR 20.0%
!! AATGATCATACAAATAAACA+AGG - tig0022984:35586-35605 None:intergenic 20.0%
! CTAAAAAAGAATGTATGTCA+AGG - tig0022984:34144-34163 None:intergenic 25.0%
!! AAAGATTAAAATTTGGTGAG+GGG - tig0022984:34191-34210 None:intergenic 25.0%
! TTCCTCCATCATATTATATA+TGG - tig0022984:34270-34289 None:intergenic 25.0%
! AAGAAGAGAATATTCATGAA+GGG + tig0022984:34288-34307 Msa1403890:CDS 25.0%
!! TTTTTCTTCTTTGAATTCTG+AGG - tig0022984:34356-34375 None:intergenic 25.0%
! GTTAGGAAAAAAAAATTCAC+AGG - tig0022984:34889-34908 None:intergenic 25.0%
!!! GTGAATTTTTTTTTCCTAAC+AGG + tig0022984:34889-34908 Msa1403890:intron 25.0%
!! AAAGCAAAGATTTTCAAATG+AGG + tig0022984:35030-35049 Msa1403890:CDS 25.0%
!! AAGCAAAGATTTTCAAATGA+GGG + tig0022984:35031-35050 Msa1403890:CDS 25.0%
!!! AAACTTCATTTTTTTGAGCT+TGG - tig0022984:35368-35387 None:intergenic 25.0%
! CTAAACAAATGAATTAAGAG+AGG - tig0022984:35427-35446 None:intergenic 25.0%
! CTAAAAAAGAATGTATGTCA+AGG - tig0022984:34144-34163 None:intergenic 25.0%
!! AAAGATTAAAATTTGGTGAG+GGG - tig0022984:34191-34210 None:intergenic 25.0%
! TTCCTCCATCATATTATATA+TGG - tig0022984:34270-34289 None:intergenic 25.0%
! AAGAAGAGAATATTCATGAA+GGG + tig0022984:34288-34307 Msa1403890:CDS 25.0%
!! TTTTTCTTCTTTGAATTCTG+AGG - tig0022984:34356-34375 None:intergenic 25.0%
! GTTAGGAAAAAAAAATTCAC+AGG - tig0022984:34889-34908 None:intergenic 25.0%
!!! GTGAATTTTTTTTTCCTAAC+AGG + tig0022984:34889-34908 Msa1403890:intron 25.0%
!! AAAGCAAAGATTTTCAAATG+AGG + tig0022984:35030-35049 Msa1403890:CDS 25.0%
!! AAGCAAAGATTTTCAAATGA+GGG + tig0022984:35031-35050 Msa1403890:CDS 25.0%
!!! AAACTTCATTTTTTTGAGCT+TGG - tig0022984:35368-35387 None:intergenic 25.0%
! CTAAACAAATGAATTAAGAG+AGG - tig0022984:35427-35446 None:intergenic 25.0%
TTATTGGAACTTGTAAAGGA+AGG - tig0022984:34107-34126 None:intergenic 30.0%
GGTTATTTGTATCACGTTAT+TGG - tig0022984:34123-34142 None:intergenic 30.0%
! AAGATTAAAATTTGGTGAGG+GGG - tig0022984:34190-34209 None:intergenic 30.0%
!!! AGGCCTAAGTTTTGAATTTT+TGG - tig0022984:34244-34263 None:intergenic 30.0%
AAAATTCAAAACTTAGGCCT+TGG + tig0022984:34244-34263 Msa1403890:five_prime_UTR 30.0%
CATCATATTATATATGGCCA+AGG - tig0022984:34264-34283 None:intergenic 30.0%
CTTGGCCATATATAATATGA+TGG + tig0022984:34262-34281 Msa1403890:exon 30.0%
GAAGAAGAGAATATTCATGA+AGG + tig0022984:34287-34306 Msa1403890:CDS 30.0%
AATATTCATGAAGGGTTCAA+AGG + tig0022984:34296-34315 Msa1403890:CDS 30.0%
AGAAGATAGAAAACAAGAGA+AGG + tig0022984:34378-34397 Msa1403890:CDS 30.0%
TGATGAACAGATAAGATCAT+TGG + tig0022984:34406-34425 Msa1403890:CDS 30.0%
ATTTGAGTCAGAATCAAAGT+TGG + tig0022984:34436-34455 Msa1403890:CDS 30.0%
! AAGATTTTCAAATGAGGGTT+TGG + tig0022984:35036-35055 Msa1403890:CDS 30.0%
! AAAATGAAAGAAGCACAACA+TGG + tig0022984:35089-35108 Msa1403890:CDS 30.0%
!!! TTTTCAAGTGTTGTTGTCAA+GGG - tig0022984:35175-35194 None:intergenic 30.0%
!!! TTTTTCAAGTGTTGTTGTCA+AGG - tig0022984:35176-35195 None:intergenic 30.0%
TGACAACAACACTTGAAAAA+TGG + tig0022984:35176-35195 Msa1403890:CDS 30.0%
AATCATGCAATAGTTCTCAA+TGG + tig0022984:35230-35249 Msa1403890:CDS 30.0%
TTCTTCTATGTTGCAATGTT+TGG + tig0022984:35284-35303 Msa1403890:three_prime_UTR 30.0%
!! CATTCTTTGTTCCTTTTTCA+AGG - tig0022984:35315-35334 None:intergenic 30.0%
CTTGAAAAAGGAACAAAGAA+TGG + tig0022984:35313-35332 Msa1403890:three_prime_UTR 30.0%
!! TTTTGTAGGCTTGATTTGAT+AGG + tig0022984:35385-35404 Msa1403890:three_prime_UTR 30.0%
TTTAGAGATTTGGAAGAAGA+AGG + tig0022984:35442-35461 Msa1403890:three_prime_UTR 30.0%
GATCATACAAATAAACAAGG+TGG - tig0022984:35583-35602 None:intergenic 30.0%
GATCATTGTAACATATGACT+TGG + tig0022984:35599-35618 Msa1403890:three_prime_UTR 30.0%
TTATTGGAACTTGTAAAGGA+AGG - tig0022984:34107-34126 None:intergenic 30.0%
GGTTATTTGTATCACGTTAT+TGG - tig0022984:34123-34142 None:intergenic 30.0%
! AAGATTAAAATTTGGTGAGG+GGG - tig0022984:34190-34209 None:intergenic 30.0%
!!! AGGCCTAAGTTTTGAATTTT+TGG - tig0022984:34244-34263 None:intergenic 30.0%
AAAATTCAAAACTTAGGCCT+TGG + tig0022984:34244-34263 Msa1403890:five_prime_UTR 30.0%
CATCATATTATATATGGCCA+AGG - tig0022984:34264-34283 None:intergenic 30.0%
CTTGGCCATATATAATATGA+TGG + tig0022984:34262-34281 Msa1403890:exon 30.0%
GAAGAAGAGAATATTCATGA+AGG + tig0022984:34287-34306 Msa1403890:CDS 30.0%
AATATTCATGAAGGGTTCAA+AGG + tig0022984:34296-34315 Msa1403890:CDS 30.0%
AGAAGATAGAAAACAAGAGA+AGG + tig0022984:34378-34397 Msa1403890:CDS 30.0%
TGATGAACAGATAAGATCAT+TGG + tig0022984:34406-34425 Msa1403890:CDS 30.0%
ATTTGAGTCAGAATCAAAGT+TGG + tig0022984:34436-34455 Msa1403890:CDS 30.0%
! AAGATTTTCAAATGAGGGTT+TGG + tig0022984:35036-35055 Msa1403890:CDS 30.0%
! AAAATGAAAGAAGCACAACA+TGG + tig0022984:35089-35108 Msa1403890:CDS 30.0%
!!! TTTTCAAGTGTTGTTGTCAA+GGG - tig0022984:35175-35194 None:intergenic 30.0%
!!! TTTTTCAAGTGTTGTTGTCA+AGG - tig0022984:35176-35195 None:intergenic 30.0%
TGACAACAACACTTGAAAAA+TGG + tig0022984:35176-35195 Msa1403890:CDS 30.0%
AATCATGCAATAGTTCTCAA+TGG + tig0022984:35230-35249 Msa1403890:CDS 30.0%
TTCTTCTATGTTGCAATGTT+TGG + tig0022984:35284-35303 Msa1403890:three_prime_UTR 30.0%
!! CATTCTTTGTTCCTTTTTCA+AGG - tig0022984:35315-35334 None:intergenic 30.0%
CTTGAAAAAGGAACAAAGAA+TGG + tig0022984:35313-35332 Msa1403890:three_prime_UTR 30.0%
!! TTTTGTAGGCTTGATTTGAT+AGG + tig0022984:35385-35404 Msa1403890:three_prime_UTR 30.0%
TTTAGAGATTTGGAAGAAGA+AGG + tig0022984:35442-35461 Msa1403890:three_prime_UTR 30.0%
GATCATACAAATAAACAAGG+TGG - tig0022984:35583-35602 None:intergenic 30.0%
GATCATTGTAACATATGACT+TGG + tig0022984:35599-35618 Msa1403890:three_prime_UTR 30.0%
TTATGGTACTAGAAAACGTG+TGG - tig0022984:34073-34092 None:intergenic 35.0%
CACGTTATTGGAACTTGTAA+AGG - tig0022984:34111-34130 None:intergenic 35.0%
GGCCATATATAATATGATGG+AGG + tig0022984:34265-34284 Msa1403890:exon 35.0%
AACCATATAGCAACTTGTCT+AGG - tig0022984:34506-34525 None:intergenic 35.0%
TTCTAAGTTTCAGTGCCTTA+AGG + tig0022984:34607-34626 Msa1403890:CDS 35.0%
AAGACTCTTTCTCTTCCTTA+AGG - tig0022984:34625-34644 None:intergenic 35.0%
TCAGAGGTAAGTTAGTAGTT+TGG + tig0022984:34650-34669 Msa1403890:intron 35.0%
ACATGCTCAAGCTTAGTATT+AGG + tig0022984:34808-34827 Msa1403890:intron 35.0%
AAGTTAATGTCGAGTCTGTA+AGG - tig0022984:34863-34882 None:intergenic 35.0%
GGTTCAGAAGCTAAGTTATA+TGG + tig0022984:34910-34929 Msa1403890:intron 35.0%
TCAGAAGCTAAGTTATATGG+TGG + tig0022984:34913-34932 Msa1403890:CDS 35.0%
AAGGAAAATAGCACAGAAGA+TGG + tig0022984:34965-34984 Msa1403890:CDS 35.0%
GAAATGGATACAACAATTGC+AGG + tig0022984:34996-35015 Msa1403890:CDS 35.0%
! ATTTTCAAATGAGGGTTTGG+AGG + tig0022984:35039-35058 Msa1403890:CDS 35.0%
AACATGGACAGAGAAAATTG+AGG + tig0022984:35105-35124 Msa1403890:CDS 35.0%
GATTGATCTAACATACCACA+TGG - tig0022984:35214-35233 None:intergenic 35.0%
ATGCAATAGTTCTCAATGGT+TGG + tig0022984:35234-35253 Msa1403890:CDS 35.0%
! GTTCTCAATGGTTGGATTTT+TGG + tig0022984:35242-35261 Msa1403890:CDS 35.0%
CATTGCAACATAGAAGAACA+TGG - tig0022984:35282-35301 None:intergenic 35.0%
!! GTTTGGTGTTTCCTTGAAAA+AGG + tig0022984:35301-35320 Msa1403890:three_prime_UTR 35.0%
GTTCAAAACATGCAAGTTCA+AGG + tig0022984:35335-35354 Msa1403890:three_prime_UTR 35.0%
TTATGGTACTAGAAAACGTG+TGG - tig0022984:34073-34092 None:intergenic 35.0%
CACGTTATTGGAACTTGTAA+AGG - tig0022984:34111-34130 None:intergenic 35.0%
GGCCATATATAATATGATGG+AGG + tig0022984:34265-34284 Msa1403890:exon 35.0%
AACCATATAGCAACTTGTCT+AGG - tig0022984:34506-34525 None:intergenic 35.0%
TTCTAAGTTTCAGTGCCTTA+AGG + tig0022984:34607-34626 Msa1403890:CDS 35.0%
AAGACTCTTTCTCTTCCTTA+AGG - tig0022984:34625-34644 None:intergenic 35.0%
TCAGAGGTAAGTTAGTAGTT+TGG + tig0022984:34650-34669 Msa1403890:intron 35.0%
ACATGCTCAAGCTTAGTATT+AGG + tig0022984:34808-34827 Msa1403890:intron 35.0%
AAGTTAATGTCGAGTCTGTA+AGG - tig0022984:34863-34882 None:intergenic 35.0%
GGTTCAGAAGCTAAGTTATA+TGG + tig0022984:34910-34929 Msa1403890:intron 35.0%
TCAGAAGCTAAGTTATATGG+TGG + tig0022984:34913-34932 Msa1403890:CDS 35.0%
AAGGAAAATAGCACAGAAGA+TGG + tig0022984:34965-34984 Msa1403890:CDS 35.0%
GAAATGGATACAACAATTGC+AGG + tig0022984:34996-35015 Msa1403890:CDS 35.0%
! ATTTTCAAATGAGGGTTTGG+AGG + tig0022984:35039-35058 Msa1403890:CDS 35.0%
AACATGGACAGAGAAAATTG+AGG + tig0022984:35105-35124 Msa1403890:CDS 35.0%
GATTGATCTAACATACCACA+TGG - tig0022984:35214-35233 None:intergenic 35.0%
ATGCAATAGTTCTCAATGGT+TGG + tig0022984:35234-35253 Msa1403890:CDS 35.0%
! GTTCTCAATGGTTGGATTTT+TGG + tig0022984:35242-35261 Msa1403890:CDS 35.0%
CATTGCAACATAGAAGAACA+TGG - tig0022984:35282-35301 None:intergenic 35.0%
!! GTTTGGTGTTTCCTTGAAAA+AGG + tig0022984:35301-35320 Msa1403890:three_prime_UTR 35.0%
GTTCAAAACATGCAAGTTCA+AGG + tig0022984:35335-35354 Msa1403890:three_prime_UTR 35.0%
GGAAGGATCATAGTGACTTA+TGG - tig0022984:34090-34109 None:intergenic 40.0%
! AAATTTGGTGAGGGGGAATA+GGG - tig0022984:34183-34202 None:intergenic 40.0%
! AAAATTTGGTGAGGGGGAAT+AGG - tig0022984:34184-34203 None:intergenic 40.0%
ATGCAACTTGCAAGAGATCT+TGG + tig0022984:34473-34492 Msa1403890:CDS 40.0%
AGCCTAGACAAGTTGCTATA+TGG + tig0022984:34501-34520 Msa1403890:CDS 40.0%
TTCAGAACAGAAGAGCAAGA+TGG + tig0022984:34525-34544 Msa1403890:CDS 40.0%
GAGCAAGATGGAAATCAAAG+AGG + tig0022984:34537-34556 Msa1403890:CDS 40.0%
GAAAGAGTCTTTGCAATCAG+AGG + tig0022984:34634-34653 Msa1403890:CDS 40.0%
GACTCAGCTCGTTAAATACT+CGG + tig0022984:34760-34779 Msa1403890:intron 40.0%
ACTTAGCTTCTGAACCTGTT+AGG - tig0022984:34906-34925 None:intergenic 40.0%
GAAAATAGCACAGAAGATGG+TGG + tig0022984:34968-34987 Msa1403890:CDS 40.0%
TGAGGGTTTGGAGGATAAAA+TGG + tig0022984:35048-35067 Msa1403890:CDS 40.0%
ACAGAGAAAATTGAGGACAG+AGG + tig0022984:35112-35131 Msa1403890:CDS 40.0%
TGGTACAATGTTGATCCATG+TGG + tig0022984:35196-35215 Msa1403890:CDS 40.0%
CACAAGCAAATGGATGGAAA+AGG - tig0022984:35515-35534 None:intergenic 40.0%
ATCACACTGACACAAGCAAA+TGG - tig0022984:35525-35544 None:intergenic 40.0%
GACTTGGACTCACATAACAT+AGG + tig0022984:35615-35634 Msa1403890:three_prime_UTR 40.0%
GGAAGGATCATAGTGACTTA+TGG - tig0022984:34090-34109 None:intergenic 40.0%
! AAATTTGGTGAGGGGGAATA+GGG - tig0022984:34183-34202 None:intergenic 40.0%
! AAAATTTGGTGAGGGGGAAT+AGG - tig0022984:34184-34203 None:intergenic 40.0%
ATGCAACTTGCAAGAGATCT+TGG + tig0022984:34473-34492 Msa1403890:CDS 40.0%
AGCCTAGACAAGTTGCTATA+TGG + tig0022984:34501-34520 Msa1403890:CDS 40.0%
TTCAGAACAGAAGAGCAAGA+TGG + tig0022984:34525-34544 Msa1403890:CDS 40.0%
GAGCAAGATGGAAATCAAAG+AGG + tig0022984:34537-34556 Msa1403890:CDS 40.0%
GAAAGAGTCTTTGCAATCAG+AGG + tig0022984:34634-34653 Msa1403890:CDS 40.0%
GACTCAGCTCGTTAAATACT+CGG + tig0022984:34760-34779 Msa1403890:intron 40.0%
ACTTAGCTTCTGAACCTGTT+AGG - tig0022984:34906-34925 None:intergenic 40.0%
GAAAATAGCACAGAAGATGG+TGG + tig0022984:34968-34987 Msa1403890:CDS 40.0%
TGAGGGTTTGGAGGATAAAA+TGG + tig0022984:35048-35067 Msa1403890:CDS 40.0%
ACAGAGAAAATTGAGGACAG+AGG + tig0022984:35112-35131 Msa1403890:CDS 40.0%
TGGTACAATGTTGATCCATG+TGG + tig0022984:35196-35215 Msa1403890:CDS 40.0%
CACAAGCAAATGGATGGAAA+AGG - tig0022984:35515-35534 None:intergenic 40.0%
ATCACACTGACACAAGCAAA+TGG - tig0022984:35525-35544 None:intergenic 40.0%
GACTTGGACTCACATAACAT+AGG + tig0022984:35615-35634 Msa1403890:three_prime_UTR 40.0%
CAGAATCAAAGTTGGAGCCA+AGG + tig0022984:34444-34463 Msa1403890:CDS 45.0%
GCAAGTTGCATCTTCTTCCT+TGG - tig0022984:34464-34483 None:intergenic 45.0%
! ATGGTGGAAACATCGCATGA+TGG + tig0022984:34929-34948 Msa1403890:CDS 45.0%
! AAACATCGCATGATGGAGGA+AGG + tig0022984:34936-34955 Msa1403890:CDS 45.0%
! AACATCGCATGATGGAGGAA+GGG + tig0022984:34937-34956 Msa1403890:CDS 45.0%
! GAAGATGGTGGTTCAGGAAA+TGG + tig0022984:34980-34999 Msa1403890:CDS 45.0%
CACTGACACAAGCAAATGGA+TGG - tig0022984:35521-35540 None:intergenic 45.0%
CAGAATCAAAGTTGGAGCCA+AGG + tig0022984:34444-34463 Msa1403890:CDS 45.0%
GCAAGTTGCATCTTCTTCCT+TGG - tig0022984:34464-34483 None:intergenic 45.0%
! ATGGTGGAAACATCGCATGA+TGG + tig0022984:34929-34948 Msa1403890:CDS 45.0%
! AAACATCGCATGATGGAGGA+AGG + tig0022984:34936-34955 Msa1403890:CDS 45.0%
! AACATCGCATGATGGAGGAA+GGG + tig0022984:34937-34956 Msa1403890:CDS 45.0%
! GAAGATGGTGGTTCAGGAAA+TGG + tig0022984:34980-34999 Msa1403890:CDS 45.0%
CACTGACACAAGCAAATGGA+TGG - tig0022984:35521-35540 None:intergenic 45.0%
!! TAATAAAAAAGATTAAAATT+TGG - tig0022984:34198-34217 None:intergenic 5.0%
!! TAATAAAAAAGATTAAAATT+TGG - tig0022984:34198-34217 None:intergenic 5.0%
GTGGAAACATCGCATGATGG+AGG + tig0022984:34932-34951 Msa1403890:CDS 50.0%
TGATGGAGGAAGGGAAGCTA+AGG + tig0022984:34946-34965 Msa1403890:CDS 50.0%
! AGCACAGAAGATGGTGGTTC+AGG + tig0022984:34974-34993 Msa1403890:CDS 50.0%
GTGGAAACATCGCATGATGG+AGG + tig0022984:34932-34951 Msa1403890:CDS 50.0%
TGATGGAGGAAGGGAAGCTA+AGG + tig0022984:34946-34965 Msa1403890:CDS 50.0%
! AGCACAGAAGATGGTGGTTC+AGG + tig0022984:34974-34993 Msa1403890:CDS 50.0%
Chromosome Type Strat End Strand Name
tig0022984 gene 34048 35662 34048 ID=Msa1403890;Name=Msa1403890
tig0022984 mRNA 34048 35662 34048 ID=Msa1403890-mRNA-1;Parent=Msa1403890;Name=Msa1403890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=230|1|1|1|1|1|2|392|245
tig0022984 exon 34048 34655 34048 ID=Msa1403890-mRNA-1:exon:19500;Parent=Msa1403890-mRNA-1
tig0022984 exon 34911 35662 34911 ID=Msa1403890-mRNA-1:exon:19501;Parent=Msa1403890-mRNA-1
tig0022984 five_prime_UTR 34048 34277 34048 ID=Msa1403890-mRNA-1:five_prime_utr;Parent=Msa1403890-mRNA-1
tig0022984 CDS 34278 34655 34278 ID=Msa1403890-mRNA-1:cds;Parent=Msa1403890-mRNA-1
tig0022984 CDS 34911 35270 34911 ID=Msa1403890-mRNA-1:cds;Parent=Msa1403890-mRNA-1
tig0022984 three_prime_UTR 35271 35662 35271 ID=Msa1403890-mRNA-1:three_prime_utr;Parent=Msa1403890-mRNA-1
Gene Sequence

>Msa1403890

ATGATGGAGGAAGAAGAGAATATTCATGAAGGGTTCAAAGGAAAAAATGTTGAAAGCATGAGTTGCTTAGAGACACCTCAGAATTCAAAGAAGAAAAACAAGAAGATAGAAAACAAGAGAAGGTTTAGTGATGAACAGATAAGATCATTGGAATGCATATTTGAGTCAGAATCAAAGTTGGAGCCAAGGAAGAAGATGCAACTTGCAAGAGATCTTGGTTTGCAGCCTAGACAAGTTGCTATATGGTTTCAGAACAGAAGAGCAAGATGGAAATCAAAGAGGATAGAACAAGAATACAGAAAACTCAAAGATGAATATGATAATTTAGCTTCTAAGTTTCAGTGCCTTAAGGAAGAGAAAGAGTCTTTGCAATCAGAGGTTCAGAAGCTAAGTTATATGGTGGAAACATCGCATGATGGAGGAAGGGAAGCTAAGGAAAATAGCACAGAAGATGGTGGTTCAGGAAATGGATACAACAATTGCAGGTTTGAAGAAACAAAGCAAAGATTTTCAAATGAGGGTTTGGAGGATAAAATGGTCATTTACTCAGATGATCAAAATGAAAGAAGCACAACATGGACAGAGAAAATTGAGGACAGAGGAAATCAACTTTTAAGAAATGATGATCATGCAGAAATTCCCTTGACAACAACACTTGAAAAATGGTACAATGTTGATCCATGTGGTATGTTAGATCAATCATGCAATAGTTCTCAATGGTTGGATTTTTGGACTTGA

Protein sequence

>Msa1403890

MMEEEENIHEGFKGKNVESMSCLETPQNSKKKNKKIENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASKFQCLKEEKESLQSEVQKLSYMVETSHDGGREAKENSTEDGGSGNGYNNCRFEETKQRFSNEGLEDKMVIYSDDQNERSTTWTEKIEDRGNQLLRNDDHAEIPLTTTLEKWYNVDPCGMLDQSCNSSQWLDFWT*