AlfalfaGEDB | Msa0376910

M. sativa cultivar zhongmu-4 / Msa0376910

KEGG: K09338
GO: -
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376910	QNO30513.1	99.184	245	2	0	1	245	1	245	2.39e-179	502

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376910	sp\|P46897\|ATHB7_ARATH	42.324	241	118	5	25	245	19	258	2.02e-44	152

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376910	A0A7G9X583	99.184	245	2	0	1	245	1	245	1.14e-179	502

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TFs/TRs:

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Gene ID	Type	Classification
Msa0376910	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001790	Msa0376910	0.802963	4.371393e-49	-8.615850e-47
Msa0003890	Msa0376910	0.848211	7.083349e-60	-8.615850e-47
Msa0004840	Msa0376910	0.828179	1.038218e-54	-8.615850e-47
Msa0005270	Msa0376910	0.841509	4.550141e-58	-8.615850e-47
Msa0006110	Msa0376910	0.850551	1.578729e-60	-8.615850e-47
Msa0007440	Msa0376910	0.827190	1.794166e-54	-8.615850e-47
Msa0010110	Msa0376910	0.813691	2.251908e-51	-8.615850e-47
Msa0010490	Msa0376910	0.801722	7.872391e-49	-8.615850e-47
Msa0010770	Msa0376910	0.803457	3.455273e-49	-8.615850e-47
Msa0011170	Msa0376910	0.815566	8.656646e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376910	MtrunA17_Chr3g0127511	98.367	245	4	0	1	245	1	245	0.0	496
Msa0376910	MtrunA17_Chr8g0346251	43.750	208	109	4	42	245	45	248	4.59e-48	159
Msa0376910	MtrunA17_Chr6g0450991	45.185	135	63	2	7	130	25	159	3.06e-30	114
Msa0376910	MtrunA17_Chr4g0060031	56.122	98	43	0	37	134	94	191	3.69e-29	112
Msa0376910	MtrunA17_Chr6g0453021	56.383	94	41	0	37	130	95	188	6.52e-29	110
Msa0376910	MtrunA17_Chr8g0362151	54.255	94	43	0	37	130	76	169	3.51e-28	108
Msa0376910	MtrunA17_Chr5g0415941	55.435	92	41	0	39	130	88	179	1.59e-26	104
Msa0376910	MtrunA17_Chr8g0381741	55.435	92	41	0	39	130	55	146	1.94e-26	104
Msa0376910	MtrunA17_Chr5g0416391	54.255	94	43	0	37	130	76	169	2.40e-26	103
Msa0376910	MtrunA17_Chr1g0179581	51.648	91	37	1	37	127	27	110	4.49e-26	98.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0376910	AT2G46680.1	42.324	241	118	5	25	245	19	258	2.05e-45	152
Msa0376910	AT2G46680.2	43.162	234	114	5	30	245	24	256	2.21e-44	150
Msa0376910	AT3G61890.1	68.132	91	29	0	41	131	33	123	2.06e-38	134
Msa0376910	AT3G01470.1	43.382	136	77	0	37	172	67	202	1.17e-29	112
Msa0376910	AT2G22430.1	56.383	94	41	0	37	130	61	154	5.01e-29	111
Msa0376910	AT4G40060.1	52.041	98	47	0	37	134	58	155	2.19e-28	109
Msa0376910	AT1G69780.1	54.255	94	43	0	37	130	84	177	9.16e-28	107
Msa0376910	AT5G15150.1	53.191	94	44	0	37	130	114	207	3.58e-26	103
Msa0376910	AT2G18550.1	50.943	106	45	1	39	137	62	167	8.47e-26	100
Msa0376910	AT5G65310.2	51.064	94	46	0	37	130	53	146	2.96e-25	101

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Find 64 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTAAAATTTGGTGA+GGG	0.520087	3_1:+77234913	None:intergenic
AAAATGAAAGAAGCACAACA+TGG	0.668449	3_1:-77234018	Msa0376910:CDS
AAAATTCAAAACTTAGGCCT+TGG	0.467576	3_1:-77234858	Msa0376910:five_prime_UTR
AAACATCGCATGATGGAGGA+AGG	0.574577	3_1:-77234171	Msa0376910:CDS
AAAGATTAAAATTTGGTGAG+GGG	0.584079	3_1:+77234914	None:intergenic
AACATCGCATGATGGAGGAA+GGG	0.628539	3_1:-77234170	Msa0376910:CDS
AACATGGACAGAGAAAATTG+AGG	0.710156	3_1:-77234002	Msa0376910:CDS
AACCATATAGCAACTTGTCT+AGG	0.580258	3_1:+77234599	None:intergenic
AAGAAGAGAATATTCATGAA+GGG	0.519573	3_1:-77234814	Msa0376910:CDS
AAGACTCTTTCTCTTCCTTA+AGG	0.407960	3_1:+77234480	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CACGTTATTGGAATTTGTAA+AGG	+	chr3_1:77233530-77233549	None:intergenic	30.0%
GGTTATTTGTATCACGTTAT+TGG	+	chr3_1:77233542-77233561	None:intergenic	30.0%
AAAATTCAAAACTTAGGCCT+TGG	-	chr3_1:77233663-77233682	Msa0376910:three_prime_UTR	30.0%
CATCATATTATATATGGCCA+AGG	+	chr3_1:77233683-77233702	None:intergenic	30.0%
CTTGGCCATATATAATATGA+TGG	-	chr3_1:77233681-77233700	Msa0376910:three_prime_UTR	30.0%
GAAGAAGAGAATATTCATGA+AGG	-	chr3_1:77233706-77233725	Msa0376910:three_prime_UTR	30.0%
AGAAGATAGAAAACAAGAGA+AGG	-	chr3_1:77233797-77233816	Msa0376910:three_prime_UTR	30.0%
TGATGAACAGATAAGATCAT+TGG	-	chr3_1:77233825-77233844	Msa0376910:three_prime_UTR	30.0%
ATTTGAGTCAGAATCAAAGT+TGG	-	chr3_1:77233855-77233874	Msa0376910:exon	30.0%
AAGTTAATGTCGAGTCTATA+AGG	+	chr3_1:77234277-77234296	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	77233467	77235076	77233467	ID=Msa0376910;Name=Msa0376910
chr3_1	mRNA	77233467	77235076	77233467	ID=Msa0376910-mRNA-1;Parent=Msa0376910;Name=Msa0376910-mRNA-1;_AED=0.00;_eAED=0.00;_QI=230\|1\|1\|1\|1\|1\|2\|392\|245
chr3_1	exon	77233467	77234218	77233467	ID=Msa0376910-mRNA-1:exon:18431;Parent=Msa0376910-mRNA-1
chr3_1	exon	77234469	77235076	77234469	ID=Msa0376910-mRNA-1:exon:18430;Parent=Msa0376910-mRNA-1
chr3_1	five_prime_UTR	77234847	77235076	77234847	ID=Msa0376910-mRNA-1:five_prime_utr;Parent=Msa0376910-mRNA-1
chr3_1	CDS	77234469	77234846	77234469	ID=Msa0376910-mRNA-1:cds;Parent=Msa0376910-mRNA-1
chr3_1	CDS	77233859	77234218	77233859	ID=Msa0376910-mRNA-1:cds;Parent=Msa0376910-mRNA-1
chr3_1	three_prime_UTR	77233467	77233858	77233467	ID=Msa0376910-mRNA-1:three_prime_utr;Parent=Msa0376910-mRNA-1

Gene Sequence

>Msa0376910

ATGATGGAGGAAGAAGAGAATATTCATGAAGGGTTTAAAGGAAAAAATGTTGAAAGCATGAGTTGCTTAGAGACACCTCAGAATTCAAAGAAGAAAAACAAGAAGATAGAAAACAAGAGAAGGTTTAGTGATGAACAGATAAGATCATTGGAATGCATATTTGAGTCAGAATCAAAGTTGGAGCCAAGGAAGAAGATGCAACTTGCAAGAGATCTTGGTTTGCAGCCTAGACAAGTTGCTATATGGTTTCAGAACAGAAGAGCAAGATGGAAATCAAAGAGGATAGAACAAGAATACAGAAAACTCAAAGATGAATATGATAATTTAGCTTCTAAGTTTCAGTGCCTTAAGGAAGAGAAAGAGTCTTTGCAATCAGAGGTTCAGAAGCTAAGTTATATGGTGGAAACATCGCATGATGGAGGAAGGGAAGCTAAGGAAAATAGCACAGAAGATGGTGGTTCAGGAAATGGATACAACAATTGCAGGTTTGAAGAAACAAAGCAAAGATTTTCAAATGAGGGTTTGGAGGATAAAATGGTCATTTATTCAGATGATCAAAATGAAAGAAGCACAACATGGACAGAGAAAATTGAGGACAGAGGAAATCAACTTTTAAGAAATGATGATCATGCAGAAATTCCCTTGACAACAACACTTGAAAAATGGTACAATGTTGATCCATGTGGTATGTTAGATCAATCATGCAATAGTTCTCAATGGTTGGATTTTTGGACTTGA

Protein sequence

>Msa0376910

MMEEEENIHEGFKGKNVESMSCLETPQNSKKKNKKIENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASKFQCLKEEKESLQSEVQKLSYMVETSHDGGREAKENSTEDGGSGNGYNNCRFEETKQRFSNEGLEDKMVIYSDDQNERSTTWTEKIEDRGNQLLRNDDHAEIPLTTTLEKWYNVDPCGMLDQSCNSSQWLDFWT*