AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0376910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376910 MtrunA17_Chr3g0127511 98.367 245 4 0 1 245 1 245 0.0 496
Msa0376910 MtrunA17_Chr8g0346251 43.750 208 109 4 42 245 45 248 4.59e-48 159
Msa0376910 MtrunA17_Chr6g0450991 45.185 135 63 2 7 130 25 159 3.06e-30 114
Msa0376910 MtrunA17_Chr4g0060031 56.122 98 43 0 37 134 94 191 3.69e-29 112
Msa0376910 MtrunA17_Chr6g0453021 56.383 94 41 0 37 130 95 188 6.52e-29 110
Msa0376910 MtrunA17_Chr8g0362151 54.255 94 43 0 37 130 76 169 3.51e-28 108
Msa0376910 MtrunA17_Chr5g0415941 55.435 92 41 0 39 130 88 179 1.59e-26 104
Msa0376910 MtrunA17_Chr8g0381741 55.435 92 41 0 39 130 55 146 1.94e-26 104
Msa0376910 MtrunA17_Chr5g0416391 54.255 94 43 0 37 130 76 169 2.40e-26 103
Msa0376910 MtrunA17_Chr1g0179581 51.648 91 37 1 37 127 27 110 4.49e-26 98.2
Msa0376910 MtrunA17_Chr3g0123691 51.064 94 46 0 37 130 59 152 5.10e-26 103
Msa0376910 MtrunA17_Chr7g0265521 40.690 145 58 4 37 160 62 199 2.62e-25 99.8
Msa0376910 MtrunA17_Chr8g0362751 54.348 92 42 0 39 130 90 181 4.10e-25 100
Msa0376910 MtrunA17_Chr3g0119291 49.474 95 48 0 36 130 57 151 7.50e-25 99.0
Msa0376910 MtrunA17_Chr7g0217111 47.826 92 48 0 39 130 81 172 2.52e-21 89.7
Msa0376910 MtrunA17_Chr5g0403701 47.368 114 46 2 31 130 39 152 4.47e-21 87.8
Msa0376910 MtrunA17_Chr5g0403691 52.577 97 38 2 31 120 39 134 1.39e-19 84.3
Msa0376910 MtrunA17_Chr4g0055851 44.211 95 46 1 39 133 121 208 7.53e-14 69.3
Msa0376910 MtrunA17_Chr7g0258831 41.584 101 52 1 33 133 155 248 7.30e-13 66.6
Msa0376910 MtrunA17_Chr4g0071411 42.857 84 48 0 41 124 91 174 1.38e-12 65.1
Msa0376910 MtrunA17_Chr4g0054421 43.158 95 47 1 39 133 128 215 2.25e-12 65.1
Msa0376910 MtrunA17_Chr5g0400781 43.750 96 53 1 39 133 124 219 3.99e-12 64.3
Msa0376910 MtrunA17_Chr1g0151971 43.158 95 47 1 39 133 131 218 6.66e-12 63.9
Msa0376910 MtrunA17_Chr1g0175651 39.423 104 56 1 33 136 149 245 1.10e-11 63.5
Msa0376910 MtrunA17_Chr3g0135331 45.333 75 41 0 36 110 143 217 1.23e-11 63.2
Msa0376910 MtrunA17_Chr8g0335131 42.105 95 48 1 39 133 147 234 1.57e-11 63.2
Msa0376910 MtrunA17_Chr2g0308611 40.000 95 50 1 39 133 201 288 5.74e-11 61.6
Msa0376910 MtrunA17_Chr5g0399491 41.053 95 49 1 39 133 137 224 6.81e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376910 AT2G46680.1 42.324 241 118 5 25 245 19 258 2.05e-45 152
Msa0376910 AT2G46680.2 43.162 234 114 5 30 245 24 256 2.21e-44 150
Msa0376910 AT3G61890.1 68.132 91 29 0 41 131 33 123 2.06e-38 134
Msa0376910 AT3G01470.1 43.382 136 77 0 37 172 67 202 1.17e-29 112
Msa0376910 AT2G22430.1 56.383 94 41 0 37 130 61 154 5.01e-29 111
Msa0376910 AT4G40060.1 52.041 98 47 0 37 134 58 155 2.19e-28 109
Msa0376910 AT1G69780.1 54.255 94 43 0 37 130 84 177 9.16e-28 107
Msa0376910 AT5G15150.1 53.191 94 44 0 37 130 114 207 3.58e-26 103
Msa0376910 AT2G18550.1 50.943 106 45 1 39 137 62 167 8.47e-26 100
Msa0376910 AT5G65310.2 51.064 94 46 0 37 130 53 146 2.96e-25 101
Msa0376910 AT5G65310.1 51.064 94 46 0 37 130 71 164 3.79e-25 101
Msa0376910 AT4G36740.2 42.647 136 61 2 17 135 25 160 9.48e-25 98.2
Msa0376910 AT5G66700.1 51.000 100 42 1 39 131 72 171 1.35e-24 98.2
Msa0376910 AT4G36740.1 50.962 104 44 1 39 135 56 159 1.37e-24 97.8
Msa0376910 AT3G01220.1 48.936 94 48 0 37 130 86 179 9.14e-24 97.1
Msa0376910 AT5G03790.1 43.478 115 54 2 20 134 63 166 1.89e-23 95.1
Msa0376910 AT1G26960.1 42.969 128 65 2 11 130 36 163 1.74e-22 93.2
Msa0376910 AT5G03790.2 46.000 100 50 1 20 119 63 158 7.86e-22 89.7
Msa0376910 AT1G27045.4 40.299 134 74 2 9 138 35 166 4.64e-21 89.4
Msa0376910 AT1G27045.1 39.683 126 72 1 9 130 35 160 5.61e-20 85.9
Msa0376910 AT1G27045.5 45.361 97 53 0 34 130 21 117 6.12e-20 84.7
Msa0376910 AT1G27045.3 45.361 97 53 0 34 130 21 117 6.12e-20 84.7
Msa0376910 AT1G27045.2 45.361 97 53 0 34 130 13 109 8.34e-20 84.0
Msa0376910 AT2G36610.1 42.308 104 45 2 39 134 72 168 2.64e-19 82.8
Msa0376910 AT5G53980.1 39.604 101 57 1 29 129 6 102 1.44e-15 72.0
Msa0376910 AT2G44910.1 42.000 100 51 1 39 138 164 256 1.48e-12 66.6
Msa0376910 AT3G60390.1 42.000 100 51 1 39 138 163 255 3.56e-12 65.5
Msa0376910 AT2G22800.1 42.105 95 48 1 39 133 114 201 1.11e-11 63.5
Msa0376910 AT5G06710.1 41.837 98 50 1 33 130 185 275 1.39e-11 63.9
Msa0376910 AT4G16780.1 42.105 95 48 1 39 133 130 217 5.94e-11 61.6
Msa0376910 AT4G37790.1 41.053 95 49 1 39 133 127 214 8.45e-11 61.2
Msa0376910 AT2G01430.1 42.105 95 48 1 39 133 140 227 8.84e-11 60.8

Find 64 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGGTGTTTCCTTGAAAA+AGG 0.186239 3_1:-77233806 Msa0376910:three_prime_UTR
GGTTATTTGTATCACGTTAT+TGG 0.186281 3_1:+77234982 None:intergenic
AATATTCATGAAGGGTTTAA+AGG 0.209558 3_1:-77234806 Msa0376910:CDS
TTCCTCCATCATATTATATA+TGG 0.262604 3_1:+77234835 None:intergenic
AATTCATTTGTTTAGAGATT+TGG 0.291509 3_1:-77233675 Msa0376910:three_prime_UTR
TTCTTCTATGTTGCAATGTT+TGG 0.317476 3_1:-77233823 Msa0376910:three_prime_UTR
AGCCTAGACAAGTTGCTATA+TGG 0.329458 3_1:-77234601 Msa0376910:CDS
GCAAGTTGCATCTTCTTCCT+TGG 0.339735 3_1:+77234641 None:intergenic
TGAGGGTTTGGAGGATAAAA+TGG 0.360194 3_1:-77234059 Msa0376910:CDS
AGCACAGAAGATGGTGGTTC+AGG 0.365057 3_1:-77234133 Msa0376910:CDS
GGTTCAGAAGCTAAGTTATA+TGG 0.367405 3_1:-77234197 Msa0376910:CDS
GAAGATGGTGGTTCAGGAAA+TGG 0.372815 3_1:-77234127 Msa0376910:CDS
GAAATGGATACAACAATTGC+AGG 0.379643 3_1:-77234111 Msa0376910:CDS
ATGCAACTTGCAAGAGATCT+TGG 0.385707 3_1:-77234629 Msa0376910:CDS
TTTAGAGATTTGGAAGAAGA+AGG 0.390617 3_1:-77233665 Msa0376910:three_prime_UTR
TTCTAAGTTTCAGTGCCTTA+AGG 0.396105 3_1:-77234495 Msa0376910:CDS
AAGACTCTTTCTCTTCCTTA+AGG 0.407960 3_1:+77234480 None:intergenic
TAAAGTTATAAAACTAGAAA+TGG 0.413285 3_1:+77233554 None:intergenic
GGAAGGATCATAGTGACTTA+TGG 0.449172 3_1:+77235015 None:intergenic
TGATGAACAGATAAGATCAT+TGG 0.455417 3_1:-77234696 Msa0376910:CDS
CACGTTATTGGAATTTGTAA+AGG 0.461697 3_1:+77234994 None:intergenic
AAAATTCAAAACTTAGGCCT+TGG 0.467576 3_1:-77234858 Msa0376910:five_prime_UTR
GTTCAAAACATGCAAGTTCA+AGG 0.470409 3_1:-77233772 Msa0376910:three_prime_UTR
ATGCAATAGTTCTCAATGGT+TGG 0.475551 3_1:-77233873 Msa0376910:CDS
ATCACACTGACACAAGCAAA+TGG 0.497713 3_1:+77233585 None:intergenic
GAAGAAGAGAATATTCATGA+AGG 0.503417 3_1:-77234815 Msa0376910:CDS
CACAAGCAAATGGATGGAAA+AGG 0.514463 3_1:+77233595 None:intergenic
CAGAATCAAAGTTGGAGCCA+AGG 0.518559 3_1:-77234658 Msa0376910:CDS
ATTTGAGTCAGAATCAAAGT+TGG 0.518777 3_1:-77234666 Msa0376910:CDS
AAGAAGAGAATATTCATGAA+GGG 0.519573 3_1:-77234814 Msa0376910:CDS
AAAAGATTAAAATTTGGTGA+GGG 0.520087 3_1:+77234913 None:intergenic
AAGGAAAATAGCACAGAAGA+TGG 0.540540 3_1:-77234142 Msa0376910:CDS
GAAAGAGTCTTTGCAATCAG+AGG 0.541327 3_1:-77234468 Msa0376910:intron
CACTGACACAAGCAAATGGA+TGG 0.547485 3_1:+77233589 None:intergenic
AAGATTAAAATTTGGTGAGG+GGG 0.552758 3_1:+77234915 None:intergenic
AATCATGCAATAGTTCTCAA+TGG 0.553811 3_1:-77233877 Msa0376910:CDS
TTATTGGAATTTGTAAAGGA+AGG 0.555668 3_1:+77234998 None:intergenic
CTTGGCCATATATAATATGA+TGG 0.568051 3_1:-77234840 Msa0376910:exon
GATCATTGTAACATATGACT+TGG 0.568054 3_1:-77233508 Msa0376910:three_prime_UTR
AGAAGATAGAAAACAAGAGA+AGG 0.569555 3_1:-77234724 Msa0376910:CDS
AAACATCGCATGATGGAGGA+AGG 0.574577 3_1:-77234171 Msa0376910:CDS
AACCATATAGCAACTTGTCT+AGG 0.580258 3_1:+77234599 None:intergenic
CATCATATTATATATGGCCA+AGG 0.582674 3_1:+77234841 None:intergenic
AAAGATTAAAATTTGGTGAG+GGG 0.584079 3_1:+77234914 None:intergenic
TTCAGAACAGAAGAGCAAGA+TGG 0.602218 3_1:-77234577 Msa0376910:CDS
CTAAACAAATGAATTAAGAG+AGG 0.605271 3_1:+77233683 None:intergenic
TGATGGAGGAAGGGAAGCTA+AGG 0.606332 3_1:-77234161 Msa0376910:CDS
TCAGAAGCTAAGTTATATGG+TGG 0.615960 3_1:-77234194 Msa0376910:CDS
ATGGTGGAAACATCGCATGA+TGG 0.617224 3_1:-77234178 Msa0376910:CDS
CATTGCAACATAGAAGAACA+TGG 0.626691 3_1:+77233828 None:intergenic
AACATCGCATGATGGAGGAA+GGG 0.628539 3_1:-77234170 Msa0376910:CDS
GTGGAAACATCGCATGATGG+AGG 0.645127 3_1:-77234175 Msa0376910:CDS
GGCCATATATAATATGATGG+AGG 0.645919 3_1:-77234837 Msa0376910:exon
GAGCAAGATGGAAATCAAAG+AGG 0.650346 3_1:-77234565 Msa0376910:CDS
GACTTGGACTCACATAACAT+AGG 0.662360 3_1:-77233492 Msa0376910:three_prime_UTR
GATTGATCTAACATACCACA+TGG 0.663576 3_1:+77233896 None:intergenic
GAAAATAGCACAGAAGATGG+TGG 0.663671 3_1:-77234139 Msa0376910:CDS
AAAATGAAAGAAGCACAACA+TGG 0.668449 3_1:-77234018 Msa0376910:CDS
ACAGAGAAAATTGAGGACAG+AGG 0.671559 3_1:-77233995 Msa0376910:CDS
AATGATCATACAAATAAACA+AGG 0.699783 3_1:+77233524 None:intergenic
GATCATACAAATAAACAAGG+TGG 0.701047 3_1:+77233527 None:intergenic
AACATGGACAGAGAAAATTG+AGG 0.710156 3_1:-77234002 Msa0376910:CDS
TGGTACAATGTTGATCCATG+TGG 0.723453 3_1:-77233911 Msa0376910:CDS
TTATGGTACTAGAAAACGTG+TGG 0.745063 3_1:+77235032 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGTTATAAAACTAGAAA+TGG + chr3_1:77234970-77234989 None:intergenic 15.0%
!! TAAAGTTATAAAACTAGAAA+TGG + chr3_1:77234970-77234989 None:intergenic 15.0%
!!! AAAAGATTAAAATTTGGTGA+GGG + chr3_1:77233611-77233630 None:intergenic 20.0%
!!! AAAAAGATTAAAATTTGGTG+AGG + chr3_1:77233612-77233631 None:intergenic 20.0%
!!! TTTGAATTTTTGGAATTTGA+AGG + chr3_1:77233653-77233672 None:intergenic 20.0%
!! ATTCCAAAAATTCAAAACTT+AGG - chr3_1:77233657-77233676 Msa0376910:three_prime_UTR 20.0%
!! TTAGGAAAAAAAAATTCACA+GGG + chr3_1:77234302-77234321 None:intergenic 20.0%
!!! TCAAAAAAATGAAGTTTTGT+AGG - chr3_1:77234785-77234804 Msa0376910:CDS 20.0%
!! AATTCATTTGTTTAGAGATT+TGG - chr3_1:77234846-77234865 Msa0376910:exon 20.0%
!! AATGATCATACAAATAAACA+AGG + chr3_1:77235000-77235019 None:intergenic 20.0%
!!! AAAAGATTAAAATTTGGTGA+GGG + chr3_1:77233611-77233630 None:intergenic 20.0%
!!! AAAAAGATTAAAATTTGGTG+AGG + chr3_1:77233612-77233631 None:intergenic 20.0%
!!! TTTGAATTTTTGGAATTTGA+AGG + chr3_1:77233653-77233672 None:intergenic 20.0%
!! ATTCCAAAAATTCAAAACTT+AGG - chr3_1:77233657-77233676 Msa0376910:three_prime_UTR 20.0%
!! TTAGGAAAAAAAAATTCACA+GGG + chr3_1:77234302-77234321 None:intergenic 20.0%
!!! TCAAAAAAATGAAGTTTTGT+AGG - chr3_1:77234785-77234804 Msa0376910:CDS 20.0%
!! AATTCATTTGTTTAGAGATT+TGG - chr3_1:77234846-77234865 Msa0376910:exon 20.0%
!! AATGATCATACAAATAAACA+AGG + chr3_1:77235000-77235019 None:intergenic 20.0%
! TTATTGGAATTTGTAAAGGA+AGG + chr3_1:77233526-77233545 None:intergenic 25.0%
! CTAAAAAAGAATGTATGTCA+AGG + chr3_1:77233563-77233582 None:intergenic 25.0%
!! AAAGATTAAAATTTGGTGAG+GGG + chr3_1:77233610-77233629 None:intergenic 25.0%
! TTCCTCCATCATATTATATA+TGG + chr3_1:77233689-77233708 None:intergenic 25.0%
! AAGAAGAGAATATTCATGAA+GGG - chr3_1:77233707-77233726 Msa0376910:three_prime_UTR 25.0%
! AATATTCATGAAGGGTTTAA+AGG - chr3_1:77233715-77233734 Msa0376910:three_prime_UTR 25.0%
!! TTTTTCTTCTTTGAATTCTG+AGG + chr3_1:77233775-77233794 None:intergenic 25.0%
! GTTAGGAAAAAAAAATTCAC+AGG + chr3_1:77234303-77234322 None:intergenic 25.0%
!!! GTGAATTTTTTTTTCCTAAC+AGG - chr3_1:77234303-77234322 Msa0376910:intron 25.0%
!! AAAGCAAAGATTTTCAAATG+AGG - chr3_1:77234444-77234463 Msa0376910:intron 25.0%
!! AAGCAAAGATTTTCAAATGA+GGG - chr3_1:77234445-77234464 Msa0376910:intron 25.0%
!!! AAACTTCATTTTTTTGAGCT+TGG + chr3_1:77234782-77234801 None:intergenic 25.0%
! CTAAACAAATGAATTAAGAG+AGG + chr3_1:77234841-77234860 None:intergenic 25.0%
! TTATTGGAATTTGTAAAGGA+AGG + chr3_1:77233526-77233545 None:intergenic 25.0%
! CTAAAAAAGAATGTATGTCA+AGG + chr3_1:77233563-77233582 None:intergenic 25.0%
!! AAAGATTAAAATTTGGTGAG+GGG + chr3_1:77233610-77233629 None:intergenic 25.0%
! TTCCTCCATCATATTATATA+TGG + chr3_1:77233689-77233708 None:intergenic 25.0%
! AAGAAGAGAATATTCATGAA+GGG - chr3_1:77233707-77233726 Msa0376910:three_prime_UTR 25.0%
! AATATTCATGAAGGGTTTAA+AGG - chr3_1:77233715-77233734 Msa0376910:three_prime_UTR 25.0%
!! TTTTTCTTCTTTGAATTCTG+AGG + chr3_1:77233775-77233794 None:intergenic 25.0%
! GTTAGGAAAAAAAAATTCAC+AGG + chr3_1:77234303-77234322 None:intergenic 25.0%
!!! GTGAATTTTTTTTTCCTAAC+AGG - chr3_1:77234303-77234322 Msa0376910:intron 25.0%
!! AAAGCAAAGATTTTCAAATG+AGG - chr3_1:77234444-77234463 Msa0376910:intron 25.0%
!! AAGCAAAGATTTTCAAATGA+GGG - chr3_1:77234445-77234464 Msa0376910:intron 25.0%
!!! AAACTTCATTTTTTTGAGCT+TGG + chr3_1:77234782-77234801 None:intergenic 25.0%
! CTAAACAAATGAATTAAGAG+AGG + chr3_1:77234841-77234860 None:intergenic 25.0%
CACGTTATTGGAATTTGTAA+AGG + chr3_1:77233530-77233549 None:intergenic 30.0%
GGTTATTTGTATCACGTTAT+TGG + chr3_1:77233542-77233561 None:intergenic 30.0%
! AAGATTAAAATTTGGTGAGG+GGG + chr3_1:77233609-77233628 None:intergenic 30.0%
!!! AGGCCTAAGTTTTGAATTTT+TGG + chr3_1:77233663-77233682 None:intergenic 30.0%
AAAATTCAAAACTTAGGCCT+TGG - chr3_1:77233663-77233682 Msa0376910:three_prime_UTR 30.0%
CATCATATTATATATGGCCA+AGG + chr3_1:77233683-77233702 None:intergenic 30.0%
CTTGGCCATATATAATATGA+TGG - chr3_1:77233681-77233700 Msa0376910:three_prime_UTR 30.0%
GAAGAAGAGAATATTCATGA+AGG - chr3_1:77233706-77233725 Msa0376910:three_prime_UTR 30.0%
AGAAGATAGAAAACAAGAGA+AGG - chr3_1:77233797-77233816 Msa0376910:three_prime_UTR 30.0%
TGATGAACAGATAAGATCAT+TGG - chr3_1:77233825-77233844 Msa0376910:three_prime_UTR 30.0%
ATTTGAGTCAGAATCAAAGT+TGG - chr3_1:77233855-77233874 Msa0376910:exon 30.0%
AAGTTAATGTCGAGTCTATA+AGG + chr3_1:77234277-77234296 None:intergenic 30.0%
! AAGATTTTCAAATGAGGGTT+TGG - chr3_1:77234450-77234469 Msa0376910:intron 30.0%
! AAAATGAAAGAAGCACAACA+TGG - chr3_1:77234503-77234522 Msa0376910:CDS 30.0%
!!! TTTTCAAGTGTTGTTGTCAA+GGG + chr3_1:77234589-77234608 None:intergenic 30.0%
!!! TTTTTCAAGTGTTGTTGTCA+AGG + chr3_1:77234590-77234609 None:intergenic 30.0%
TGACAACAACACTTGAAAAA+TGG - chr3_1:77234590-77234609 Msa0376910:CDS 30.0%
AATCATGCAATAGTTCTCAA+TGG - chr3_1:77234644-77234663 Msa0376910:CDS 30.0%
TTCTTCTATGTTGCAATGTT+TGG - chr3_1:77234698-77234717 Msa0376910:CDS 30.0%
!! CATTCTTTGTTCCTTTTTCA+AGG + chr3_1:77234729-77234748 None:intergenic 30.0%
CTTGAAAAAGGAACAAAGAA+TGG - chr3_1:77234727-77234746 Msa0376910:CDS 30.0%
!! TTTTGTAGGCTTGATTTGAT+AGG - chr3_1:77234799-77234818 Msa0376910:CDS 30.0%
TTTAGAGATTTGGAAGAAGA+AGG - chr3_1:77234856-77234875 Msa0376910:five_prime_UTR 30.0%
GATCATACAAATAAACAAGG+TGG + chr3_1:77234997-77235016 None:intergenic 30.0%
GATCATTGTAACATATGACT+TGG - chr3_1:77235013-77235032 Msa0376910:five_prime_UTR 30.0%
CACGTTATTGGAATTTGTAA+AGG + chr3_1:77233530-77233549 None:intergenic 30.0%
GGTTATTTGTATCACGTTAT+TGG + chr3_1:77233542-77233561 None:intergenic 30.0%
! AAGATTAAAATTTGGTGAGG+GGG + chr3_1:77233609-77233628 None:intergenic 30.0%
!!! AGGCCTAAGTTTTGAATTTT+TGG + chr3_1:77233663-77233682 None:intergenic 30.0%
AAAATTCAAAACTTAGGCCT+TGG - chr3_1:77233663-77233682 Msa0376910:three_prime_UTR 30.0%
CATCATATTATATATGGCCA+AGG + chr3_1:77233683-77233702 None:intergenic 30.0%
CTTGGCCATATATAATATGA+TGG - chr3_1:77233681-77233700 Msa0376910:three_prime_UTR 30.0%
GAAGAAGAGAATATTCATGA+AGG - chr3_1:77233706-77233725 Msa0376910:three_prime_UTR 30.0%
AGAAGATAGAAAACAAGAGA+AGG - chr3_1:77233797-77233816 Msa0376910:three_prime_UTR 30.0%
TGATGAACAGATAAGATCAT+TGG - chr3_1:77233825-77233844 Msa0376910:three_prime_UTR 30.0%
ATTTGAGTCAGAATCAAAGT+TGG - chr3_1:77233855-77233874 Msa0376910:exon 30.0%
AAGTTAATGTCGAGTCTATA+AGG + chr3_1:77234277-77234296 None:intergenic 30.0%
! AAGATTTTCAAATGAGGGTT+TGG - chr3_1:77234450-77234469 Msa0376910:intron 30.0%
! AAAATGAAAGAAGCACAACA+TGG - chr3_1:77234503-77234522 Msa0376910:CDS 30.0%
!!! TTTTCAAGTGTTGTTGTCAA+GGG + chr3_1:77234589-77234608 None:intergenic 30.0%
!!! TTTTTCAAGTGTTGTTGTCA+AGG + chr3_1:77234590-77234609 None:intergenic 30.0%
TGACAACAACACTTGAAAAA+TGG - chr3_1:77234590-77234609 Msa0376910:CDS 30.0%
AATCATGCAATAGTTCTCAA+TGG - chr3_1:77234644-77234663 Msa0376910:CDS 30.0%
TTCTTCTATGTTGCAATGTT+TGG - chr3_1:77234698-77234717 Msa0376910:CDS 30.0%
!! CATTCTTTGTTCCTTTTTCA+AGG + chr3_1:77234729-77234748 None:intergenic 30.0%
CTTGAAAAAGGAACAAAGAA+TGG - chr3_1:77234727-77234746 Msa0376910:CDS 30.0%
!! TTTTGTAGGCTTGATTTGAT+AGG - chr3_1:77234799-77234818 Msa0376910:CDS 30.0%
TTTAGAGATTTGGAAGAAGA+AGG - chr3_1:77234856-77234875 Msa0376910:five_prime_UTR 30.0%
GATCATACAAATAAACAAGG+TGG + chr3_1:77234997-77235016 None:intergenic 30.0%
GATCATTGTAACATATGACT+TGG - chr3_1:77235013-77235032 Msa0376910:five_prime_UTR 30.0%
TTATGGTACTAGAAAACGTG+TGG + chr3_1:77233492-77233511 None:intergenic 35.0%
GGCCATATATAATATGATGG+AGG - chr3_1:77233684-77233703 Msa0376910:three_prime_UTR 35.0%
AACCATATAGCAACTTGTCT+AGG + chr3_1:77233925-77233944 None:intergenic 35.0%
TTCTAAGTTTCAGTGCCTTA+AGG - chr3_1:77234026-77234045 Msa0376910:CDS 35.0%
AAGACTCTTTCTCTTCCTTA+AGG + chr3_1:77234044-77234063 None:intergenic 35.0%
TCAGAGGTAAGTTAGTAGTT+TGG - chr3_1:77234069-77234088 Msa0376910:CDS 35.0%
ACATGCTCAAGCTTAGTATT+AGG - chr3_1:77234222-77234241 Msa0376910:intron 35.0%
GGTTCAGAAGCTAAGTTATA+TGG - chr3_1:77234324-77234343 Msa0376910:intron 35.0%
TCAGAAGCTAAGTTATATGG+TGG - chr3_1:77234327-77234346 Msa0376910:intron 35.0%
AAGGAAAATAGCACAGAAGA+TGG - chr3_1:77234379-77234398 Msa0376910:intron 35.0%
GAAATGGATACAACAATTGC+AGG - chr3_1:77234410-77234429 Msa0376910:intron 35.0%
! ATTTTCAAATGAGGGTTTGG+AGG - chr3_1:77234453-77234472 Msa0376910:intron 35.0%
AACATGGACAGAGAAAATTG+AGG - chr3_1:77234519-77234538 Msa0376910:CDS 35.0%
GATTGATCTAACATACCACA+TGG + chr3_1:77234628-77234647 None:intergenic 35.0%
ATGCAATAGTTCTCAATGGT+TGG - chr3_1:77234648-77234667 Msa0376910:CDS 35.0%
! GTTCTCAATGGTTGGATTTT+TGG - chr3_1:77234656-77234675 Msa0376910:CDS 35.0%
CATTGCAACATAGAAGAACA+TGG + chr3_1:77234696-77234715 None:intergenic 35.0%
!! GTTTGGTGTTTCCTTGAAAA+AGG - chr3_1:77234715-77234734 Msa0376910:CDS 35.0%
GTTCAAAACATGCAAGTTCA+AGG - chr3_1:77234749-77234768 Msa0376910:CDS 35.0%
TTATGGTACTAGAAAACGTG+TGG + chr3_1:77233492-77233511 None:intergenic 35.0%
GGCCATATATAATATGATGG+AGG - chr3_1:77233684-77233703 Msa0376910:three_prime_UTR 35.0%
AACCATATAGCAACTTGTCT+AGG + chr3_1:77233925-77233944 None:intergenic 35.0%
TTCTAAGTTTCAGTGCCTTA+AGG - chr3_1:77234026-77234045 Msa0376910:CDS 35.0%
AAGACTCTTTCTCTTCCTTA+AGG + chr3_1:77234044-77234063 None:intergenic 35.0%
TCAGAGGTAAGTTAGTAGTT+TGG - chr3_1:77234069-77234088 Msa0376910:CDS 35.0%
ACATGCTCAAGCTTAGTATT+AGG - chr3_1:77234222-77234241 Msa0376910:intron 35.0%
GGTTCAGAAGCTAAGTTATA+TGG - chr3_1:77234324-77234343 Msa0376910:intron 35.0%
TCAGAAGCTAAGTTATATGG+TGG - chr3_1:77234327-77234346 Msa0376910:intron 35.0%
AAGGAAAATAGCACAGAAGA+TGG - chr3_1:77234379-77234398 Msa0376910:intron 35.0%
GAAATGGATACAACAATTGC+AGG - chr3_1:77234410-77234429 Msa0376910:intron 35.0%
! ATTTTCAAATGAGGGTTTGG+AGG - chr3_1:77234453-77234472 Msa0376910:intron 35.0%
AACATGGACAGAGAAAATTG+AGG - chr3_1:77234519-77234538 Msa0376910:CDS 35.0%
GATTGATCTAACATACCACA+TGG + chr3_1:77234628-77234647 None:intergenic 35.0%
ATGCAATAGTTCTCAATGGT+TGG - chr3_1:77234648-77234667 Msa0376910:CDS 35.0%
! GTTCTCAATGGTTGGATTTT+TGG - chr3_1:77234656-77234675 Msa0376910:CDS 35.0%
CATTGCAACATAGAAGAACA+TGG + chr3_1:77234696-77234715 None:intergenic 35.0%
!! GTTTGGTGTTTCCTTGAAAA+AGG - chr3_1:77234715-77234734 Msa0376910:CDS 35.0%
GTTCAAAACATGCAAGTTCA+AGG - chr3_1:77234749-77234768 Msa0376910:CDS 35.0%
GGAAGGATCATAGTGACTTA+TGG + chr3_1:77233509-77233528 None:intergenic 40.0%
! AAATTTGGTGAGGGGGAATA+GGG + chr3_1:77233602-77233621 None:intergenic 40.0%
! AAAATTTGGTGAGGGGGAAT+AGG + chr3_1:77233603-77233622 None:intergenic 40.0%
ATGCAACTTGCAAGAGATCT+TGG - chr3_1:77233892-77233911 Msa0376910:CDS 40.0%
AGCCTAGACAAGTTGCTATA+TGG - chr3_1:77233920-77233939 Msa0376910:CDS 40.0%
TTCAGAACAGAAGAGCAAGA+TGG - chr3_1:77233944-77233963 Msa0376910:CDS 40.0%
GAGCAAGATGGAAATCAAAG+AGG - chr3_1:77233956-77233975 Msa0376910:CDS 40.0%
GAAAGAGTCTTTGCAATCAG+AGG - chr3_1:77234053-77234072 Msa0376910:CDS 40.0%
GACTCAGCTCGTTAAATACT+CGG - chr3_1:77234174-77234193 Msa0376910:CDS 40.0%
ACTTAGCTTCTGAACCTGTT+AGG + chr3_1:77234320-77234339 None:intergenic 40.0%
GAAAATAGCACAGAAGATGG+TGG - chr3_1:77234382-77234401 Msa0376910:intron 40.0%
TGAGGGTTTGGAGGATAAAA+TGG - chr3_1:77234462-77234481 Msa0376910:intron 40.0%
ACAGAGAAAATTGAGGACAG+AGG - chr3_1:77234526-77234545 Msa0376910:CDS 40.0%
TGGTACAATGTTGATCCATG+TGG - chr3_1:77234610-77234629 Msa0376910:CDS 40.0%
CACAAGCAAATGGATGGAAA+AGG + chr3_1:77234929-77234948 None:intergenic 40.0%
ATCACACTGACACAAGCAAA+TGG + chr3_1:77234939-77234958 None:intergenic 40.0%
GACTTGGACTCACATAACAT+AGG - chr3_1:77235029-77235048 Msa0376910:five_prime_UTR 40.0%
GGAAGGATCATAGTGACTTA+TGG + chr3_1:77233509-77233528 None:intergenic 40.0%
! AAATTTGGTGAGGGGGAATA+GGG + chr3_1:77233602-77233621 None:intergenic 40.0%
! AAAATTTGGTGAGGGGGAAT+AGG + chr3_1:77233603-77233622 None:intergenic 40.0%
ATGCAACTTGCAAGAGATCT+TGG - chr3_1:77233892-77233911 Msa0376910:CDS 40.0%
AGCCTAGACAAGTTGCTATA+TGG - chr3_1:77233920-77233939 Msa0376910:CDS 40.0%
TTCAGAACAGAAGAGCAAGA+TGG - chr3_1:77233944-77233963 Msa0376910:CDS 40.0%
GAGCAAGATGGAAATCAAAG+AGG - chr3_1:77233956-77233975 Msa0376910:CDS 40.0%
GAAAGAGTCTTTGCAATCAG+AGG - chr3_1:77234053-77234072 Msa0376910:CDS 40.0%
GACTCAGCTCGTTAAATACT+CGG - chr3_1:77234174-77234193 Msa0376910:CDS 40.0%
ACTTAGCTTCTGAACCTGTT+AGG + chr3_1:77234320-77234339 None:intergenic 40.0%
GAAAATAGCACAGAAGATGG+TGG - chr3_1:77234382-77234401 Msa0376910:intron 40.0%
TGAGGGTTTGGAGGATAAAA+TGG - chr3_1:77234462-77234481 Msa0376910:intron 40.0%
ACAGAGAAAATTGAGGACAG+AGG - chr3_1:77234526-77234545 Msa0376910:CDS 40.0%
TGGTACAATGTTGATCCATG+TGG - chr3_1:77234610-77234629 Msa0376910:CDS 40.0%
CACAAGCAAATGGATGGAAA+AGG + chr3_1:77234929-77234948 None:intergenic 40.0%
ATCACACTGACACAAGCAAA+TGG + chr3_1:77234939-77234958 None:intergenic 40.0%
GACTTGGACTCACATAACAT+AGG - chr3_1:77235029-77235048 Msa0376910:five_prime_UTR 40.0%
CAGAATCAAAGTTGGAGCCA+AGG - chr3_1:77233863-77233882 Msa0376910:CDS 45.0%
GCAAGTTGCATCTTCTTCCT+TGG + chr3_1:77233883-77233902 None:intergenic 45.0%
! ATGGTGGAAACATCGCATGA+TGG - chr3_1:77234343-77234362 Msa0376910:intron 45.0%
! AAACATCGCATGATGGAGGA+AGG - chr3_1:77234350-77234369 Msa0376910:intron 45.0%
! AACATCGCATGATGGAGGAA+GGG - chr3_1:77234351-77234370 Msa0376910:intron 45.0%
! GAAGATGGTGGTTCAGGAAA+TGG - chr3_1:77234394-77234413 Msa0376910:intron 45.0%
CACTGACACAAGCAAATGGA+TGG + chr3_1:77234935-77234954 None:intergenic 45.0%
CAGAATCAAAGTTGGAGCCA+AGG - chr3_1:77233863-77233882 Msa0376910:CDS 45.0%
GCAAGTTGCATCTTCTTCCT+TGG + chr3_1:77233883-77233902 None:intergenic 45.0%
! ATGGTGGAAACATCGCATGA+TGG - chr3_1:77234343-77234362 Msa0376910:intron 45.0%
! AAACATCGCATGATGGAGGA+AGG - chr3_1:77234350-77234369 Msa0376910:intron 45.0%
! AACATCGCATGATGGAGGAA+GGG - chr3_1:77234351-77234370 Msa0376910:intron 45.0%
! GAAGATGGTGGTTCAGGAAA+TGG - chr3_1:77234394-77234413 Msa0376910:intron 45.0%
CACTGACACAAGCAAATGGA+TGG + chr3_1:77234935-77234954 None:intergenic 45.0%
!! TAATAAAAAAGATTAAAATT+TGG + chr3_1:77233617-77233636 None:intergenic 5.0%
!! TAATAAAAAAGATTAAAATT+TGG + chr3_1:77233617-77233636 None:intergenic 5.0%
GTGGAAACATCGCATGATGG+AGG - chr3_1:77234346-77234365 Msa0376910:intron 50.0%
TGATGGAGGAAGGGAAGCTA+AGG - chr3_1:77234360-77234379 Msa0376910:intron 50.0%
! AGCACAGAAGATGGTGGTTC+AGG - chr3_1:77234388-77234407 Msa0376910:intron 50.0%
GTGGAAACATCGCATGATGG+AGG - chr3_1:77234346-77234365 Msa0376910:intron 50.0%
TGATGGAGGAAGGGAAGCTA+AGG - chr3_1:77234360-77234379 Msa0376910:intron 50.0%
! AGCACAGAAGATGGTGGTTC+AGG - chr3_1:77234388-77234407 Msa0376910:intron 50.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 77233467 77235076 77233467 ID=Msa0376910;Name=Msa0376910
chr3_1 mRNA 77233467 77235076 77233467 ID=Msa0376910-mRNA-1;Parent=Msa0376910;Name=Msa0376910-mRNA-1;_AED=0.00;_eAED=0.00;_QI=230|1|1|1|1|1|2|392|245
chr3_1 exon 77233467 77234218 77233467 ID=Msa0376910-mRNA-1:exon:18431;Parent=Msa0376910-mRNA-1
chr3_1 exon 77234469 77235076 77234469 ID=Msa0376910-mRNA-1:exon:18430;Parent=Msa0376910-mRNA-1
chr3_1 five_prime_UTR 77234847 77235076 77234847 ID=Msa0376910-mRNA-1:five_prime_utr;Parent=Msa0376910-mRNA-1
chr3_1 CDS 77234469 77234846 77234469 ID=Msa0376910-mRNA-1:cds;Parent=Msa0376910-mRNA-1
chr3_1 CDS 77233859 77234218 77233859 ID=Msa0376910-mRNA-1:cds;Parent=Msa0376910-mRNA-1
chr3_1 three_prime_UTR 77233467 77233858 77233467 ID=Msa0376910-mRNA-1:three_prime_utr;Parent=Msa0376910-mRNA-1
Gene Sequence

>Msa0376910

ATGATGGAGGAAGAAGAGAATATTCATGAAGGGTTTAAAGGAAAAAATGTTGAAAGCATGAGTTGCTTAGAGACACCTCAGAATTCAAAGAAGAAAAACAAGAAGATAGAAAACAAGAGAAGGTTTAGTGATGAACAGATAAGATCATTGGAATGCATATTTGAGTCAGAATCAAAGTTGGAGCCAAGGAAGAAGATGCAACTTGCAAGAGATCTTGGTTTGCAGCCTAGACAAGTTGCTATATGGTTTCAGAACAGAAGAGCAAGATGGAAATCAAAGAGGATAGAACAAGAATACAGAAAACTCAAAGATGAATATGATAATTTAGCTTCTAAGTTTCAGTGCCTTAAGGAAGAGAAAGAGTCTTTGCAATCAGAGGTTCAGAAGCTAAGTTATATGGTGGAAACATCGCATGATGGAGGAAGGGAAGCTAAGGAAAATAGCACAGAAGATGGTGGTTCAGGAAATGGATACAACAATTGCAGGTTTGAAGAAACAAAGCAAAGATTTTCAAATGAGGGTTTGGAGGATAAAATGGTCATTTATTCAGATGATCAAAATGAAAGAAGCACAACATGGACAGAGAAAATTGAGGACAGAGGAAATCAACTTTTAAGAAATGATGATCATGCAGAAATTCCCTTGACAACAACACTTGAAAAATGGTACAATGTTGATCCATGTGGTATGTTAGATCAATCATGCAATAGTTCTCAATGGTTGGATTTTTGGACTTGA

Protein sequence

>Msa0376910

MMEEEENIHEGFKGKNVESMSCLETPQNSKKKNKKIENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASKFQCLKEEKESLQSEVQKLSYMVETSHDGGREAKENSTEDGGSGNGYNNCRFEETKQRFSNEGLEDKMVIYSDDQNERSTTWTEKIEDRGNQLLRNDDHAEIPLTTTLEKWYNVDPCGMLDQSCNSSQWLDFWT*