AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1397120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1397120 MtrunA17_Chr3g0127511 98.367 245 4 0 1 245 1 245 0.0 496
Msa1397120 MtrunA17_Chr8g0346251 43.750 208 109 4 42 245 45 248 4.59e-48 159
Msa1397120 MtrunA17_Chr6g0450991 45.185 135 63 2 7 130 25 159 3.06e-30 114
Msa1397120 MtrunA17_Chr4g0060031 56.122 98 43 0 37 134 94 191 3.69e-29 112
Msa1397120 MtrunA17_Chr6g0453021 56.383 94 41 0 37 130 95 188 6.52e-29 110
Msa1397120 MtrunA17_Chr8g0362151 54.255 94 43 0 37 130 76 169 3.51e-28 108
Msa1397120 MtrunA17_Chr5g0415941 55.435 92 41 0 39 130 88 179 1.59e-26 104
Msa1397120 MtrunA17_Chr8g0381741 55.435 92 41 0 39 130 55 146 1.94e-26 104
Msa1397120 MtrunA17_Chr5g0416391 54.255 94 43 0 37 130 76 169 2.40e-26 103
Msa1397120 MtrunA17_Chr1g0179581 51.648 91 37 1 37 127 27 110 4.49e-26 98.2
Msa1397120 MtrunA17_Chr3g0123691 51.064 94 46 0 37 130 59 152 5.10e-26 103
Msa1397120 MtrunA17_Chr7g0265521 40.690 145 58 4 37 160 62 199 2.62e-25 99.8
Msa1397120 MtrunA17_Chr8g0362751 54.348 92 42 0 39 130 90 181 4.10e-25 100
Msa1397120 MtrunA17_Chr3g0119291 49.474 95 48 0 36 130 57 151 7.50e-25 99.0
Msa1397120 MtrunA17_Chr7g0217111 47.826 92 48 0 39 130 81 172 2.52e-21 89.7
Msa1397120 MtrunA17_Chr5g0403701 47.368 114 46 2 31 130 39 152 4.47e-21 87.8
Msa1397120 MtrunA17_Chr5g0403691 52.577 97 38 2 31 120 39 134 1.39e-19 84.3
Msa1397120 MtrunA17_Chr4g0055851 44.211 95 46 1 39 133 121 208 7.53e-14 69.3
Msa1397120 MtrunA17_Chr7g0258831 41.584 101 52 1 33 133 155 248 7.30e-13 66.6
Msa1397120 MtrunA17_Chr4g0071411 42.857 84 48 0 41 124 91 174 1.38e-12 65.1
Msa1397120 MtrunA17_Chr4g0054421 43.158 95 47 1 39 133 128 215 2.25e-12 65.1
Msa1397120 MtrunA17_Chr5g0400781 43.750 96 53 1 39 133 124 219 3.99e-12 64.3
Msa1397120 MtrunA17_Chr1g0151971 43.158 95 47 1 39 133 131 218 6.66e-12 63.9
Msa1397120 MtrunA17_Chr1g0175651 39.423 104 56 1 33 136 149 245 1.10e-11 63.5
Msa1397120 MtrunA17_Chr3g0135331 45.333 75 41 0 36 110 143 217 1.23e-11 63.2
Msa1397120 MtrunA17_Chr8g0335131 42.105 95 48 1 39 133 147 234 1.57e-11 63.2
Msa1397120 MtrunA17_Chr2g0308611 40.000 95 50 1 39 133 201 288 5.74e-11 61.6
Msa1397120 MtrunA17_Chr5g0399491 41.053 95 49 1 39 133 137 224 6.81e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1397120 AT2G46680.1 42.324 241 118 5 25 245 19 258 2.05e-45 152
Msa1397120 AT2G46680.2 43.162 234 114 5 30 245 24 256 2.21e-44 150
Msa1397120 AT3G61890.1 68.132 91 29 0 41 131 33 123 2.06e-38 134
Msa1397120 AT3G01470.1 43.382 136 77 0 37 172 67 202 1.17e-29 112
Msa1397120 AT2G22430.1 56.383 94 41 0 37 130 61 154 5.01e-29 111
Msa1397120 AT4G40060.1 52.041 98 47 0 37 134 58 155 2.19e-28 109
Msa1397120 AT1G69780.1 54.255 94 43 0 37 130 84 177 9.16e-28 107
Msa1397120 AT5G15150.1 53.191 94 44 0 37 130 114 207 3.58e-26 103
Msa1397120 AT2G18550.1 50.943 106 45 1 39 137 62 167 8.47e-26 100
Msa1397120 AT5G65310.2 51.064 94 46 0 37 130 53 146 2.96e-25 101
Msa1397120 AT5G65310.1 51.064 94 46 0 37 130 71 164 3.79e-25 101
Msa1397120 AT4G36740.2 42.647 136 61 2 17 135 25 160 9.48e-25 98.2
Msa1397120 AT5G66700.1 51.000 100 42 1 39 131 72 171 1.35e-24 98.2
Msa1397120 AT4G36740.1 50.962 104 44 1 39 135 56 159 1.37e-24 97.8
Msa1397120 AT3G01220.1 48.936 94 48 0 37 130 86 179 9.14e-24 97.1
Msa1397120 AT5G03790.1 43.478 115 54 2 20 134 63 166 1.89e-23 95.1
Msa1397120 AT1G26960.1 42.969 128 65 2 11 130 36 163 1.74e-22 93.2
Msa1397120 AT5G03790.2 46.000 100 50 1 20 119 63 158 7.86e-22 89.7
Msa1397120 AT1G27045.4 40.299 134 74 2 9 138 35 166 4.64e-21 89.4
Msa1397120 AT1G27045.1 39.683 126 72 1 9 130 35 160 5.61e-20 85.9
Msa1397120 AT1G27045.5 45.361 97 53 0 34 130 21 117 6.12e-20 84.7
Msa1397120 AT1G27045.3 45.361 97 53 0 34 130 21 117 6.12e-20 84.7
Msa1397120 AT1G27045.2 45.361 97 53 0 34 130 13 109 8.34e-20 84.0
Msa1397120 AT2G36610.1 42.308 104 45 2 39 134 72 168 2.64e-19 82.8
Msa1397120 AT5G53980.1 39.604 101 57 1 29 129 6 102 1.44e-15 72.0
Msa1397120 AT2G44910.1 42.000 100 51 1 39 138 164 256 1.48e-12 66.6
Msa1397120 AT3G60390.1 42.000 100 51 1 39 138 163 255 3.56e-12 65.5
Msa1397120 AT2G22800.1 42.105 95 48 1 39 133 114 201 1.11e-11 63.5
Msa1397120 AT5G06710.1 41.837 98 50 1 33 130 185 275 1.39e-11 63.9
Msa1397120 AT4G16780.1 42.105 95 48 1 39 133 130 217 5.94e-11 61.6
Msa1397120 AT4G37790.1 41.053 95 49 1 39 133 127 214 8.45e-11 61.2
Msa1397120 AT2G01430.1 42.105 95 48 1 39 133 140 227 8.84e-11 60.8

Find 64 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGGTGTTTCCTTGAAAA+AGG 0.186239 tig0022126:-83696 Msa1397120:three_prime_UTR
GGTTATTTGTATCACGTTAT+TGG 0.199319 tig0022126:+84877 None:intergenic
TTCCTCCATCATATTATATA+TGG 0.262604 tig0022126:+84730 None:intergenic
AATTCATTTGTTTAGAGATT+TGG 0.291509 tig0022126:-83565 Msa1397120:three_prime_UTR
TTCTTCTATGTTGCAATGTT+TGG 0.317476 tig0022126:-83713 Msa1397120:three_prime_UTR
AGCCTAGACAAGTTGCTATA+TGG 0.329458 tig0022126:-84496 Msa1397120:CDS
GCAAGTTGCATCTTCTTCCT+TGG 0.339735 tig0022126:+84536 None:intergenic
TGAGGGTTTGGAGGATAAAA+TGG 0.360194 tig0022126:-83949 Msa1397120:CDS
AGCACAGAAGATGGTGGTTC+AGG 0.365057 tig0022126:-84023 Msa1397120:CDS
GGTTCAGAAGCTAAGTTATA+TGG 0.367405 tig0022126:-84087 Msa1397120:CDS
GAAGATGGTGGTTCAGGAAA+TGG 0.372815 tig0022126:-84017 Msa1397120:CDS
GAAATGGATACAACAATTGC+AGG 0.379643 tig0022126:-84001 Msa1397120:CDS
ATGCAACTTGCAAGAGATCT+TGG 0.385707 tig0022126:-84524 Msa1397120:CDS
TTTAGAGATTTGGAAGAAGA+AGG 0.390617 tig0022126:-83555 Msa1397120:three_prime_UTR
TTCTAAGTTTCAGTGCCTTA+AGG 0.396105 tig0022126:-84390 Msa1397120:CDS
AAGACTCTTTCTCTTCCTTA+AGG 0.407960 tig0022126:+84375 None:intergenic
TAAAGTTATAAAACTAGAAA+TGG 0.413285 tig0022126:+83444 None:intergenic
CACGTTATTGGAACTTGTAA+AGG 0.438226 tig0022126:+84889 None:intergenic
GGAAGGATCATAGTGACTTA+TGG 0.449172 tig0022126:+84910 None:intergenic
TGATGAACAGATAAGATCAT+TGG 0.455417 tig0022126:-84591 Msa1397120:CDS
AAAATTCAAAACTTAGGCCT+TGG 0.467576 tig0022126:-84753 Msa1397120:five_prime_UTR
GTTCAAAACATGCAAGTTCA+AGG 0.470409 tig0022126:-83662 Msa1397120:three_prime_UTR
ATGCAATAGTTCTCAATGGT+TGG 0.475551 tig0022126:-83763 Msa1397120:CDS
AATATTCATGAAGGGTTCAA+AGG 0.493550 tig0022126:-84701 Msa1397120:CDS
ATCACACTGACACAAGCAAA+TGG 0.497713 tig0022126:+83475 None:intergenic
GAAGAAGAGAATATTCATGA+AGG 0.503417 tig0022126:-84710 Msa1397120:CDS
CACAAGCAAATGGATGGAAA+AGG 0.514463 tig0022126:+83485 None:intergenic
CAGAATCAAAGTTGGAGCCA+AGG 0.518559 tig0022126:-84553 Msa1397120:CDS
ATTTGAGTCAGAATCAAAGT+TGG 0.518777 tig0022126:-84561 Msa1397120:CDS
AAAAGATTAAAATTTGGTGA+GGG 0.520087 tig0022126:+84808 None:intergenic
AAGGAAAATAGCACAGAAGA+TGG 0.540540 tig0022126:-84032 Msa1397120:CDS
GAAAGAGTCTTTGCAATCAG+AGG 0.541327 tig0022126:-84363 Msa1397120:intron
CACTGACACAAGCAAATGGA+TGG 0.547485 tig0022126:+83479 None:intergenic
AAGATTAAAATTTGGTGAGG+GGG 0.552758 tig0022126:+84810 None:intergenic
AATCATGCAATAGTTCTCAA+TGG 0.553811 tig0022126:-83767 Msa1397120:CDS
CTTGGCCATATATAATATGA+TGG 0.568051 tig0022126:-84735 Msa1397120:exon
GATCATTGTAACATATGACT+TGG 0.568054 tig0022126:-83398 Msa1397120:three_prime_UTR
AGAAGATAGAAAACAAGAGA+AGG 0.569555 tig0022126:-84619 Msa1397120:CDS
AAACATCGCATGATGGAGGA+AGG 0.574577 tig0022126:-84061 Msa1397120:CDS
AACCATATAGCAACTTGTCT+AGG 0.580258 tig0022126:+84494 None:intergenic
CATCATATTATATATGGCCA+AGG 0.582674 tig0022126:+84736 None:intergenic
AAAGATTAAAATTTGGTGAG+GGG 0.584079 tig0022126:+84809 None:intergenic
AAGAAGAGAATATTCATGAA+GGG 0.590509 tig0022126:-84709 Msa1397120:CDS
TTCAGAACAGAAGAGCAAGA+TGG 0.602218 tig0022126:-84472 Msa1397120:CDS
CTAAACAAATGAATTAAGAG+AGG 0.605271 tig0022126:+83573 None:intergenic
TGATGGAGGAAGGGAAGCTA+AGG 0.606332 tig0022126:-84051 Msa1397120:CDS
TTATTGGAACTTGTAAAGGA+AGG 0.615756 tig0022126:+84893 None:intergenic
TCAGAAGCTAAGTTATATGG+TGG 0.615960 tig0022126:-84084 Msa1397120:CDS
ATGGTGGAAACATCGCATGA+TGG 0.617224 tig0022126:-84068 Msa1397120:CDS
CATTGCAACATAGAAGAACA+TGG 0.626691 tig0022126:+83718 None:intergenic
AACATCGCATGATGGAGGAA+GGG 0.628539 tig0022126:-84060 Msa1397120:CDS
GTGGAAACATCGCATGATGG+AGG 0.645127 tig0022126:-84065 Msa1397120:CDS
GGCCATATATAATATGATGG+AGG 0.645919 tig0022126:-84732 Msa1397120:exon
GAGCAAGATGGAAATCAAAG+AGG 0.650346 tig0022126:-84460 Msa1397120:CDS
GACTTGGACTCACATAACAT+AGG 0.662360 tig0022126:-83382 Msa1397120:three_prime_UTR
GATTGATCTAACATACCACA+TGG 0.663576 tig0022126:+83786 None:intergenic
GAAAATAGCACAGAAGATGG+TGG 0.663671 tig0022126:-84029 Msa1397120:CDS
AAAATGAAAGAAGCACAACA+TGG 0.668449 tig0022126:-83908 Msa1397120:CDS
ACAGAGAAAATTGAGGACAG+AGG 0.671559 tig0022126:-83885 Msa1397120:CDS
AATGATCATACAAATAAACA+AGG 0.699783 tig0022126:+83414 None:intergenic
GATCATACAAATAAACAAGG+TGG 0.701047 tig0022126:+83417 None:intergenic
AACATGGACAGAGAAAATTG+AGG 0.710156 tig0022126:-83892 Msa1397120:CDS
TGGTACAATGTTGATCCATG+TGG 0.723453 tig0022126:-83801 Msa1397120:CDS
TTATGGTACTAGAAAACGTG+TGG 0.745063 tig0022126:+84927 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGTTATAAAACTAGAAA+TGG + tig0022126:84865-84884 None:intergenic 15.0%
!! TAAAGTTATAAAACTAGAAA+TGG + tig0022126:84865-84884 None:intergenic 15.0%
!!! AAAAGATTAAAATTTGGTGA+GGG + tig0022126:83501-83520 None:intergenic 20.0%
!!! AAAAAGATTAAAATTTGGTG+AGG + tig0022126:83502-83521 None:intergenic 20.0%
!!! TTTGAATTTTTGGAATTTGA+AGG + tig0022126:83543-83562 None:intergenic 20.0%
!! ATTCCAAAAATTCAAAACTT+AGG - tig0022126:83547-83566 Msa1397120:three_prime_UTR 20.0%
!! TTAGGAAAAAAAAATTCACA+GGG + tig0022126:84197-84216 None:intergenic 20.0%
!!! TCAAAAAAATGAAGTTTTGT+AGG - tig0022126:84680-84699 Msa1397120:CDS 20.0%
!! AATTCATTTGTTTAGAGATT+TGG - tig0022126:84741-84760 Msa1397120:exon 20.0%
!! AATGATCATACAAATAAACA+AGG + tig0022126:84895-84914 None:intergenic 20.0%
!!! AAAAGATTAAAATTTGGTGA+GGG + tig0022126:83501-83520 None:intergenic 20.0%
!!! AAAAAGATTAAAATTTGGTG+AGG + tig0022126:83502-83521 None:intergenic 20.0%
!!! TTTGAATTTTTGGAATTTGA+AGG + tig0022126:83543-83562 None:intergenic 20.0%
!! ATTCCAAAAATTCAAAACTT+AGG - tig0022126:83547-83566 Msa1397120:three_prime_UTR 20.0%
!! TTAGGAAAAAAAAATTCACA+GGG + tig0022126:84197-84216 None:intergenic 20.0%
!!! TCAAAAAAATGAAGTTTTGT+AGG - tig0022126:84680-84699 Msa1397120:CDS 20.0%
!! AATTCATTTGTTTAGAGATT+TGG - tig0022126:84741-84760 Msa1397120:exon 20.0%
!! AATGATCATACAAATAAACA+AGG + tig0022126:84895-84914 None:intergenic 20.0%
! CTAAAAAAGAATGTATGTCA+AGG + tig0022126:83453-83472 None:intergenic 25.0%
!! AAAGATTAAAATTTGGTGAG+GGG + tig0022126:83500-83519 None:intergenic 25.0%
! TTCCTCCATCATATTATATA+TGG + tig0022126:83579-83598 None:intergenic 25.0%
! AAGAAGAGAATATTCATGAA+GGG - tig0022126:83597-83616 Msa1397120:three_prime_UTR 25.0%
!! TTTTTCTTCTTTGAATTCTG+AGG + tig0022126:83665-83684 None:intergenic 25.0%
! GTTAGGAAAAAAAAATTCAC+AGG + tig0022126:84198-84217 None:intergenic 25.0%
!!! GTGAATTTTTTTTTCCTAAC+AGG - tig0022126:84198-84217 Msa1397120:intron 25.0%
!! AAAGCAAAGATTTTCAAATG+AGG - tig0022126:84339-84358 Msa1397120:intron 25.0%
!! AAGCAAAGATTTTCAAATGA+GGG - tig0022126:84340-84359 Msa1397120:intron 25.0%
!!! AAACTTCATTTTTTTGAGCT+TGG + tig0022126:84677-84696 None:intergenic 25.0%
! CTAAACAAATGAATTAAGAG+AGG + tig0022126:84736-84755 None:intergenic 25.0%
! CTAAAAAAGAATGTATGTCA+AGG + tig0022126:83453-83472 None:intergenic 25.0%
!! AAAGATTAAAATTTGGTGAG+GGG + tig0022126:83500-83519 None:intergenic 25.0%
! TTCCTCCATCATATTATATA+TGG + tig0022126:83579-83598 None:intergenic 25.0%
! AAGAAGAGAATATTCATGAA+GGG - tig0022126:83597-83616 Msa1397120:three_prime_UTR 25.0%
!! TTTTTCTTCTTTGAATTCTG+AGG + tig0022126:83665-83684 None:intergenic 25.0%
! GTTAGGAAAAAAAAATTCAC+AGG + tig0022126:84198-84217 None:intergenic 25.0%
!!! GTGAATTTTTTTTTCCTAAC+AGG - tig0022126:84198-84217 Msa1397120:intron 25.0%
!! AAAGCAAAGATTTTCAAATG+AGG - tig0022126:84339-84358 Msa1397120:intron 25.0%
!! AAGCAAAGATTTTCAAATGA+GGG - tig0022126:84340-84359 Msa1397120:intron 25.0%
!!! AAACTTCATTTTTTTGAGCT+TGG + tig0022126:84677-84696 None:intergenic 25.0%
! CTAAACAAATGAATTAAGAG+AGG + tig0022126:84736-84755 None:intergenic 25.0%
TTATTGGAACTTGTAAAGGA+AGG + tig0022126:83416-83435 None:intergenic 30.0%
GGTTATTTGTATCACGTTAT+TGG + tig0022126:83432-83451 None:intergenic 30.0%
! AAGATTAAAATTTGGTGAGG+GGG + tig0022126:83499-83518 None:intergenic 30.0%
!!! AGGCCTAAGTTTTGAATTTT+TGG + tig0022126:83553-83572 None:intergenic 30.0%
AAAATTCAAAACTTAGGCCT+TGG - tig0022126:83553-83572 Msa1397120:three_prime_UTR 30.0%
CATCATATTATATATGGCCA+AGG + tig0022126:83573-83592 None:intergenic 30.0%
CTTGGCCATATATAATATGA+TGG - tig0022126:83571-83590 Msa1397120:three_prime_UTR 30.0%
GAAGAAGAGAATATTCATGA+AGG - tig0022126:83596-83615 Msa1397120:three_prime_UTR 30.0%
AATATTCATGAAGGGTTCAA+AGG - tig0022126:83605-83624 Msa1397120:three_prime_UTR 30.0%
AGAAGATAGAAAACAAGAGA+AGG - tig0022126:83687-83706 Msa1397120:three_prime_UTR 30.0%
TGATGAACAGATAAGATCAT+TGG - tig0022126:83715-83734 Msa1397120:three_prime_UTR 30.0%
ATTTGAGTCAGAATCAAAGT+TGG - tig0022126:83745-83764 Msa1397120:exon 30.0%
! AAGATTTTCAAATGAGGGTT+TGG - tig0022126:84345-84364 Msa1397120:intron 30.0%
! AAAATGAAAGAAGCACAACA+TGG - tig0022126:84398-84417 Msa1397120:CDS 30.0%
!!! TTTTCAAGTGTTGTTGTCAA+GGG + tig0022126:84484-84503 None:intergenic 30.0%
!!! TTTTTCAAGTGTTGTTGTCA+AGG + tig0022126:84485-84504 None:intergenic 30.0%
TGACAACAACACTTGAAAAA+TGG - tig0022126:84485-84504 Msa1397120:CDS 30.0%
AATCATGCAATAGTTCTCAA+TGG - tig0022126:84539-84558 Msa1397120:CDS 30.0%
TTCTTCTATGTTGCAATGTT+TGG - tig0022126:84593-84612 Msa1397120:CDS 30.0%
!! CATTCTTTGTTCCTTTTTCA+AGG + tig0022126:84624-84643 None:intergenic 30.0%
CTTGAAAAAGGAACAAAGAA+TGG - tig0022126:84622-84641 Msa1397120:CDS 30.0%
!! TTTTGTAGGCTTGATTTGAT+AGG - tig0022126:84694-84713 Msa1397120:CDS 30.0%
TTTAGAGATTTGGAAGAAGA+AGG - tig0022126:84751-84770 Msa1397120:five_prime_UTR 30.0%
GATCATACAAATAAACAAGG+TGG + tig0022126:84892-84911 None:intergenic 30.0%
GATCATTGTAACATATGACT+TGG - tig0022126:84908-84927 Msa1397120:five_prime_UTR 30.0%
TTATTGGAACTTGTAAAGGA+AGG + tig0022126:83416-83435 None:intergenic 30.0%
GGTTATTTGTATCACGTTAT+TGG + tig0022126:83432-83451 None:intergenic 30.0%
! AAGATTAAAATTTGGTGAGG+GGG + tig0022126:83499-83518 None:intergenic 30.0%
!!! AGGCCTAAGTTTTGAATTTT+TGG + tig0022126:83553-83572 None:intergenic 30.0%
AAAATTCAAAACTTAGGCCT+TGG - tig0022126:83553-83572 Msa1397120:three_prime_UTR 30.0%
CATCATATTATATATGGCCA+AGG + tig0022126:83573-83592 None:intergenic 30.0%
CTTGGCCATATATAATATGA+TGG - tig0022126:83571-83590 Msa1397120:three_prime_UTR 30.0%
GAAGAAGAGAATATTCATGA+AGG - tig0022126:83596-83615 Msa1397120:three_prime_UTR 30.0%
AATATTCATGAAGGGTTCAA+AGG - tig0022126:83605-83624 Msa1397120:three_prime_UTR 30.0%
AGAAGATAGAAAACAAGAGA+AGG - tig0022126:83687-83706 Msa1397120:three_prime_UTR 30.0%
TGATGAACAGATAAGATCAT+TGG - tig0022126:83715-83734 Msa1397120:three_prime_UTR 30.0%
ATTTGAGTCAGAATCAAAGT+TGG - tig0022126:83745-83764 Msa1397120:exon 30.0%
! AAGATTTTCAAATGAGGGTT+TGG - tig0022126:84345-84364 Msa1397120:intron 30.0%
! AAAATGAAAGAAGCACAACA+TGG - tig0022126:84398-84417 Msa1397120:CDS 30.0%
!!! TTTTCAAGTGTTGTTGTCAA+GGG + tig0022126:84484-84503 None:intergenic 30.0%
!!! TTTTTCAAGTGTTGTTGTCA+AGG + tig0022126:84485-84504 None:intergenic 30.0%
TGACAACAACACTTGAAAAA+TGG - tig0022126:84485-84504 Msa1397120:CDS 30.0%
AATCATGCAATAGTTCTCAA+TGG - tig0022126:84539-84558 Msa1397120:CDS 30.0%
TTCTTCTATGTTGCAATGTT+TGG - tig0022126:84593-84612 Msa1397120:CDS 30.0%
!! CATTCTTTGTTCCTTTTTCA+AGG + tig0022126:84624-84643 None:intergenic 30.0%
CTTGAAAAAGGAACAAAGAA+TGG - tig0022126:84622-84641 Msa1397120:CDS 30.0%
!! TTTTGTAGGCTTGATTTGAT+AGG - tig0022126:84694-84713 Msa1397120:CDS 30.0%
TTTAGAGATTTGGAAGAAGA+AGG - tig0022126:84751-84770 Msa1397120:five_prime_UTR 30.0%
GATCATACAAATAAACAAGG+TGG + tig0022126:84892-84911 None:intergenic 30.0%
GATCATTGTAACATATGACT+TGG - tig0022126:84908-84927 Msa1397120:five_prime_UTR 30.0%
TTATGGTACTAGAAAACGTG+TGG + tig0022126:83382-83401 None:intergenic 35.0%
CACGTTATTGGAACTTGTAA+AGG + tig0022126:83420-83439 None:intergenic 35.0%
GGCCATATATAATATGATGG+AGG - tig0022126:83574-83593 Msa1397120:three_prime_UTR 35.0%
AACCATATAGCAACTTGTCT+AGG + tig0022126:83815-83834 None:intergenic 35.0%
TTCTAAGTTTCAGTGCCTTA+AGG - tig0022126:83916-83935 Msa1397120:CDS 35.0%
AAGACTCTTTCTCTTCCTTA+AGG + tig0022126:83934-83953 None:intergenic 35.0%
TCAGAGGTAAGTTAGTAGTT+TGG - tig0022126:83959-83978 Msa1397120:CDS 35.0%
ACATGCTCAAGCTTAGTATT+AGG - tig0022126:84117-84136 Msa1397120:intron 35.0%
AAGTTAATGTCGAGTCTGTA+AGG + tig0022126:84172-84191 None:intergenic 35.0%
GGTTCAGAAGCTAAGTTATA+TGG - tig0022126:84219-84238 Msa1397120:intron 35.0%
TCAGAAGCTAAGTTATATGG+TGG - tig0022126:84222-84241 Msa1397120:intron 35.0%
AAGGAAAATAGCACAGAAGA+TGG - tig0022126:84274-84293 Msa1397120:intron 35.0%
GAAATGGATACAACAATTGC+AGG - tig0022126:84305-84324 Msa1397120:intron 35.0%
! ATTTTCAAATGAGGGTTTGG+AGG - tig0022126:84348-84367 Msa1397120:intron 35.0%
AACATGGACAGAGAAAATTG+AGG - tig0022126:84414-84433 Msa1397120:CDS 35.0%
GATTGATCTAACATACCACA+TGG + tig0022126:84523-84542 None:intergenic 35.0%
ATGCAATAGTTCTCAATGGT+TGG - tig0022126:84543-84562 Msa1397120:CDS 35.0%
! GTTCTCAATGGTTGGATTTT+TGG - tig0022126:84551-84570 Msa1397120:CDS 35.0%
CATTGCAACATAGAAGAACA+TGG + tig0022126:84591-84610 None:intergenic 35.0%
!! GTTTGGTGTTTCCTTGAAAA+AGG - tig0022126:84610-84629 Msa1397120:CDS 35.0%
GTTCAAAACATGCAAGTTCA+AGG - tig0022126:84644-84663 Msa1397120:CDS 35.0%
TTATGGTACTAGAAAACGTG+TGG + tig0022126:83382-83401 None:intergenic 35.0%
CACGTTATTGGAACTTGTAA+AGG + tig0022126:83420-83439 None:intergenic 35.0%
GGCCATATATAATATGATGG+AGG - tig0022126:83574-83593 Msa1397120:three_prime_UTR 35.0%
AACCATATAGCAACTTGTCT+AGG + tig0022126:83815-83834 None:intergenic 35.0%
TTCTAAGTTTCAGTGCCTTA+AGG - tig0022126:83916-83935 Msa1397120:CDS 35.0%
AAGACTCTTTCTCTTCCTTA+AGG + tig0022126:83934-83953 None:intergenic 35.0%
TCAGAGGTAAGTTAGTAGTT+TGG - tig0022126:83959-83978 Msa1397120:CDS 35.0%
ACATGCTCAAGCTTAGTATT+AGG - tig0022126:84117-84136 Msa1397120:intron 35.0%
AAGTTAATGTCGAGTCTGTA+AGG + tig0022126:84172-84191 None:intergenic 35.0%
GGTTCAGAAGCTAAGTTATA+TGG - tig0022126:84219-84238 Msa1397120:intron 35.0%
TCAGAAGCTAAGTTATATGG+TGG - tig0022126:84222-84241 Msa1397120:intron 35.0%
AAGGAAAATAGCACAGAAGA+TGG - tig0022126:84274-84293 Msa1397120:intron 35.0%
GAAATGGATACAACAATTGC+AGG - tig0022126:84305-84324 Msa1397120:intron 35.0%
! ATTTTCAAATGAGGGTTTGG+AGG - tig0022126:84348-84367 Msa1397120:intron 35.0%
AACATGGACAGAGAAAATTG+AGG - tig0022126:84414-84433 Msa1397120:CDS 35.0%
GATTGATCTAACATACCACA+TGG + tig0022126:84523-84542 None:intergenic 35.0%
ATGCAATAGTTCTCAATGGT+TGG - tig0022126:84543-84562 Msa1397120:CDS 35.0%
! GTTCTCAATGGTTGGATTTT+TGG - tig0022126:84551-84570 Msa1397120:CDS 35.0%
CATTGCAACATAGAAGAACA+TGG + tig0022126:84591-84610 None:intergenic 35.0%
!! GTTTGGTGTTTCCTTGAAAA+AGG - tig0022126:84610-84629 Msa1397120:CDS 35.0%
GTTCAAAACATGCAAGTTCA+AGG - tig0022126:84644-84663 Msa1397120:CDS 35.0%
GGAAGGATCATAGTGACTTA+TGG + tig0022126:83399-83418 None:intergenic 40.0%
! AAATTTGGTGAGGGGGAATA+GGG + tig0022126:83492-83511 None:intergenic 40.0%
! AAAATTTGGTGAGGGGGAAT+AGG + tig0022126:83493-83512 None:intergenic 40.0%
ATGCAACTTGCAAGAGATCT+TGG - tig0022126:83782-83801 Msa1397120:CDS 40.0%
AGCCTAGACAAGTTGCTATA+TGG - tig0022126:83810-83829 Msa1397120:CDS 40.0%
TTCAGAACAGAAGAGCAAGA+TGG - tig0022126:83834-83853 Msa1397120:CDS 40.0%
GAGCAAGATGGAAATCAAAG+AGG - tig0022126:83846-83865 Msa1397120:CDS 40.0%
GAAAGAGTCTTTGCAATCAG+AGG - tig0022126:83943-83962 Msa1397120:CDS 40.0%
GACTCAGCTCGTTAAATACT+CGG - tig0022126:84069-84088 Msa1397120:CDS 40.0%
ACTTAGCTTCTGAACCTGTT+AGG + tig0022126:84215-84234 None:intergenic 40.0%
GAAAATAGCACAGAAGATGG+TGG - tig0022126:84277-84296 Msa1397120:intron 40.0%
TGAGGGTTTGGAGGATAAAA+TGG - tig0022126:84357-84376 Msa1397120:intron 40.0%
ACAGAGAAAATTGAGGACAG+AGG - tig0022126:84421-84440 Msa1397120:CDS 40.0%
TGGTACAATGTTGATCCATG+TGG - tig0022126:84505-84524 Msa1397120:CDS 40.0%
CACAAGCAAATGGATGGAAA+AGG + tig0022126:84824-84843 None:intergenic 40.0%
ATCACACTGACACAAGCAAA+TGG + tig0022126:84834-84853 None:intergenic 40.0%
GACTTGGACTCACATAACAT+AGG - tig0022126:84924-84943 Msa1397120:five_prime_UTR 40.0%
GGAAGGATCATAGTGACTTA+TGG + tig0022126:83399-83418 None:intergenic 40.0%
! AAATTTGGTGAGGGGGAATA+GGG + tig0022126:83492-83511 None:intergenic 40.0%
! AAAATTTGGTGAGGGGGAAT+AGG + tig0022126:83493-83512 None:intergenic 40.0%
ATGCAACTTGCAAGAGATCT+TGG - tig0022126:83782-83801 Msa1397120:CDS 40.0%
AGCCTAGACAAGTTGCTATA+TGG - tig0022126:83810-83829 Msa1397120:CDS 40.0%
TTCAGAACAGAAGAGCAAGA+TGG - tig0022126:83834-83853 Msa1397120:CDS 40.0%
GAGCAAGATGGAAATCAAAG+AGG - tig0022126:83846-83865 Msa1397120:CDS 40.0%
GAAAGAGTCTTTGCAATCAG+AGG - tig0022126:83943-83962 Msa1397120:CDS 40.0%
GACTCAGCTCGTTAAATACT+CGG - tig0022126:84069-84088 Msa1397120:CDS 40.0%
ACTTAGCTTCTGAACCTGTT+AGG + tig0022126:84215-84234 None:intergenic 40.0%
GAAAATAGCACAGAAGATGG+TGG - tig0022126:84277-84296 Msa1397120:intron 40.0%
TGAGGGTTTGGAGGATAAAA+TGG - tig0022126:84357-84376 Msa1397120:intron 40.0%
ACAGAGAAAATTGAGGACAG+AGG - tig0022126:84421-84440 Msa1397120:CDS 40.0%
TGGTACAATGTTGATCCATG+TGG - tig0022126:84505-84524 Msa1397120:CDS 40.0%
CACAAGCAAATGGATGGAAA+AGG + tig0022126:84824-84843 None:intergenic 40.0%
ATCACACTGACACAAGCAAA+TGG + tig0022126:84834-84853 None:intergenic 40.0%
GACTTGGACTCACATAACAT+AGG - tig0022126:84924-84943 Msa1397120:five_prime_UTR 40.0%
CAGAATCAAAGTTGGAGCCA+AGG - tig0022126:83753-83772 Msa1397120:CDS 45.0%
GCAAGTTGCATCTTCTTCCT+TGG + tig0022126:83773-83792 None:intergenic 45.0%
! ATGGTGGAAACATCGCATGA+TGG - tig0022126:84238-84257 Msa1397120:intron 45.0%
! AAACATCGCATGATGGAGGA+AGG - tig0022126:84245-84264 Msa1397120:intron 45.0%
! AACATCGCATGATGGAGGAA+GGG - tig0022126:84246-84265 Msa1397120:intron 45.0%
! GAAGATGGTGGTTCAGGAAA+TGG - tig0022126:84289-84308 Msa1397120:intron 45.0%
CACTGACACAAGCAAATGGA+TGG + tig0022126:84830-84849 None:intergenic 45.0%
CAGAATCAAAGTTGGAGCCA+AGG - tig0022126:83753-83772 Msa1397120:CDS 45.0%
GCAAGTTGCATCTTCTTCCT+TGG + tig0022126:83773-83792 None:intergenic 45.0%
! ATGGTGGAAACATCGCATGA+TGG - tig0022126:84238-84257 Msa1397120:intron 45.0%
! AAACATCGCATGATGGAGGA+AGG - tig0022126:84245-84264 Msa1397120:intron 45.0%
! AACATCGCATGATGGAGGAA+GGG - tig0022126:84246-84265 Msa1397120:intron 45.0%
! GAAGATGGTGGTTCAGGAAA+TGG - tig0022126:84289-84308 Msa1397120:intron 45.0%
CACTGACACAAGCAAATGGA+TGG + tig0022126:84830-84849 None:intergenic 45.0%
!! TAATAAAAAAGATTAAAATT+TGG + tig0022126:83507-83526 None:intergenic 5.0%
!! TAATAAAAAAGATTAAAATT+TGG + tig0022126:83507-83526 None:intergenic 5.0%
GTGGAAACATCGCATGATGG+AGG - tig0022126:84241-84260 Msa1397120:intron 50.0%
TGATGGAGGAAGGGAAGCTA+AGG - tig0022126:84255-84274 Msa1397120:intron 50.0%
! AGCACAGAAGATGGTGGTTC+AGG - tig0022126:84283-84302 Msa1397120:intron 50.0%
GTGGAAACATCGCATGATGG+AGG - tig0022126:84241-84260 Msa1397120:intron 50.0%
TGATGGAGGAAGGGAAGCTA+AGG - tig0022126:84255-84274 Msa1397120:intron 50.0%
! AGCACAGAAGATGGTGGTTC+AGG - tig0022126:84283-84302 Msa1397120:intron 50.0%
Chromosome Type Strat End Strand Name
tig0022126 gene 83357 84971 83357 ID=Msa1397120;Name=Msa1397120
tig0022126 mRNA 83357 84971 83357 ID=Msa1397120-mRNA-1;Parent=Msa1397120;Name=Msa1397120-mRNA-1;_AED=0.00;_eAED=0.00;_QI=230|1|1|1|1|1|2|392|245
tig0022126 exon 83357 84108 83357 ID=Msa1397120-mRNA-1:exon:15853;Parent=Msa1397120-mRNA-1
tig0022126 exon 84364 84971 84364 ID=Msa1397120-mRNA-1:exon:15852;Parent=Msa1397120-mRNA-1
tig0022126 five_prime_UTR 84742 84971 84742 ID=Msa1397120-mRNA-1:five_prime_utr;Parent=Msa1397120-mRNA-1
tig0022126 CDS 84364 84741 84364 ID=Msa1397120-mRNA-1:cds;Parent=Msa1397120-mRNA-1
tig0022126 CDS 83749 84108 83749 ID=Msa1397120-mRNA-1:cds;Parent=Msa1397120-mRNA-1
tig0022126 three_prime_UTR 83357 83748 83357 ID=Msa1397120-mRNA-1:three_prime_utr;Parent=Msa1397120-mRNA-1
Gene Sequence

>Msa1397120

ATGATGGAGGAAGAAGAGAATATTCATGAAGGGTTCAAAGGAAAAAATGTTGAAAGCATGAGTTGCTTAGAGACACCTCAGAATTCAAAGAAGAAAAACAAGAAGATAGAAAACAAGAGAAGGTTTAGTGATGAACAGATAAGATCATTGGAATGCATATTTGAGTCAGAATCAAAGTTGGAGCCAAGGAAGAAGATGCAACTTGCAAGAGATCTTGGTTTGCAGCCTAGACAAGTTGCTATATGGTTTCAGAACAGAAGAGCAAGATGGAAATCAAAGAGGATAGAACAAGAATACAGAAAACTCAAAGATGAATATGATAATTTAGCTTCTAAGTTTCAGTGCCTTAAGGAAGAGAAAGAGTCTTTGCAATCAGAGGTTCAGAAGCTAAGTTATATGGTGGAAACATCGCATGATGGAGGAAGGGAAGCTAAGGAAAATAGCACAGAAGATGGTGGTTCAGGAAATGGATACAACAATTGCAGGTTTGAAGAAACAAAGCAAAGATTTTCAAATGAGGGTTTGGAGGATAAAATGGTCATTTACTCAGATGATCAAAATGAAAGAAGCACAACATGGACAGAGAAAATTGAGGACAGAGGAAATCAACTTTTAAGAAATGATGATCATGCAGAAATTCCCTTGACAACAACACTTGAAAAATGGTACAATGTTGATCCATGTGGTATGTTAGATCAATCATGCAATAGTTCTCAATGGTTGGATTTTTGGACTTGA

Protein sequence

>Msa1397120

MMEEEENIHEGFKGKNVESMSCLETPQNSKKKNKKIENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASKFQCLKEEKESLQSEVQKLSYMVETSHDGGREAKENSTEDGGSGNGYNNCRFEETKQRFSNEGLEDKMVIYSDDQNERSTTWTEKIEDRGNQLLRNDDHAEIPLTTTLEKWYNVDPCGMLDQSCNSSQWLDFWT*