Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432190 | XP_003603314.1 | 97.902 | 143 | 3 | 0 | 1 | 143 | 1 | 143 | 1.34e-100 | 297 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432190 | sp|Q93VG8|PPDEX_ARATH | 57.576 | 132 | 56 | 0 | 13 | 144 | 22 | 153 | 1.88e-61 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432190 | G7J9W5 | 97.902 | 143 | 3 | 0 | 1 | 143 | 1 | 143 | 6.41e-101 | 297 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0382340 | Msa0432190 | 0.895683 | 7.592010e-76 | -8.615850e-47 |
| Msa0432190 | Msa0476710 | 0.932111 | 1.388429e-94 | -8.615850e-47 |
| Msa0432190 | Msa0521040 | 0.924378 | 7.628081e-90 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432190 | MtrunA17_Chr3g0137121 | 97.902 | 143 | 3 | 0 | 1 | 143 | 1 | 143 | 1.23e-104 | 297 |
| Msa0432190 | MtrunA17_Chr1g0149791 | 81.119 | 143 | 27 | 0 | 1 | 143 | 1 | 143 | 1.69e-89 | 259 |
| Msa0432190 | MtrunA17_Chr1g0154681 | 70.769 | 130 | 38 | 0 | 14 | 143 | 39 | 168 | 1.37e-69 | 210 |
| Msa0432190 | MtrunA17_Chr4g0002531 | 71.318 | 129 | 37 | 0 | 15 | 143 | 25 | 153 | 2.08e-67 | 204 |
| Msa0432190 | MtrunA17_Chr1g0162711 | 65.909 | 132 | 45 | 0 | 12 | 143 | 36 | 167 | 3.58e-66 | 201 |
| Msa0432190 | MtrunA17_Chr4g0055821 | 58.088 | 136 | 57 | 0 | 9 | 144 | 14 | 149 | 1.55e-61 | 188 |
| Msa0432190 | MtrunA17_Chr5g0399541 | 61.905 | 126 | 48 | 0 | 19 | 144 | 25 | 150 | 6.97e-61 | 187 |
| Msa0432190 | MtrunA17_Chr4g0063261 | 61.600 | 125 | 48 | 0 | 19 | 143 | 31 | 155 | 1.97e-56 | 176 |
| Msa0432190 | MtrunA17_Chr2g0306871 | 57.851 | 121 | 51 | 0 | 24 | 144 | 33 | 153 | 1.29e-53 | 168 |
| Msa0432190 | MtrunA17_Chr1g0202701 | 38.298 | 141 | 68 | 5 | 19 | 143 | 4 | 141 | 2.75e-23 | 90.9 |
| Msa0432190 | MtrunA17_Chr6g0468771 | 40.000 | 110 | 63 | 3 | 36 | 143 | 34 | 142 | 1.39e-21 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432190 | AT5G25170.1 | 80.435 | 138 | 26 | 1 | 6 | 143 | 8 | 144 | 3.14e-82 | 241 |
| Msa0432190 | AT2G25190.1 | 75.373 | 134 | 33 | 0 | 10 | 143 | 10 | 143 | 1.47e-78 | 233 |
| Msa0432190 | AT1G80690.2 | 70.504 | 139 | 37 | 1 | 10 | 144 | 4 | 142 | 5.26e-70 | 211 |
| Msa0432190 | AT1G80690.1 | 70.290 | 138 | 37 | 1 | 10 | 143 | 4 | 141 | 2.50e-69 | 209 |
| Msa0432190 | AT1G47740.1 | 70.769 | 130 | 38 | 0 | 14 | 143 | 66 | 195 | 4.14e-69 | 210 |
| Msa0432190 | AT1G47740.2 | 70.769 | 130 | 38 | 0 | 14 | 143 | 66 | 195 | 4.14e-69 | 210 |
| Msa0432190 | AT1G47740.3 | 70.769 | 130 | 38 | 0 | 14 | 143 | 66 | 195 | 4.14e-69 | 210 |
| Msa0432190 | AT4G31980.1 | 67.133 | 143 | 47 | 0 | 1 | 143 | 1 | 143 | 4.44e-68 | 218 |
| Msa0432190 | AT4G17486.1 | 57.576 | 132 | 56 | 0 | 13 | 144 | 22 | 153 | 1.91e-62 | 191 |
| Msa0432190 | AT5G47310.1 | 59.375 | 128 | 52 | 0 | 17 | 144 | 28 | 155 | 6.84e-62 | 190 |
| Msa0432190 | AT4G17486.2 | 57.692 | 130 | 55 | 0 | 13 | 142 | 22 | 151 | 7.46e-62 | 189 |
| Msa0432190 | AT5G25170.2 | 76.768 | 99 | 23 | 0 | 45 | 143 | 2 | 100 | 1.25e-54 | 169 |
| Msa0432190 | AT4G25660.1 | 39.623 | 106 | 62 | 2 | 39 | 143 | 38 | 142 | 1.27e-20 | 84.7 |
| Msa0432190 | AT4G25680.1 | 39.623 | 106 | 62 | 2 | 39 | 143 | 38 | 142 | 2.72e-20 | 84.0 |
| Msa0432190 | AT3G07090.2 | 31.783 | 129 | 72 | 3 | 19 | 139 | 8 | 128 | 1.46e-12 | 63.5 |
| Msa0432190 | AT3G07090.1 | 31.783 | 129 | 72 | 3 | 19 | 139 | 8 | 128 | 1.46e-12 | 63.5 |
Find 130 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCCGTGCTTTAAGATTT+TGG | 0.049402 | 3_2:-84351577 | None:intergenic |
| CCATTAACGGTTATGCTTAT+TGG | 0.129676 | 3_2:+84350566 | Msa0432190:CDS |
| TTTCTTTGTTTCTCCATTCT+TGG | 0.134095 | 3_2:+84352463 | Msa0432190:three_prime_UTR |
| ATCTTAAAGCACGGAGTTTA+TGG | 0.140003 | 3_2:+84351582 | Msa0432190:three_prime_UTR |
| CCAATAAGCATAACCGTTAA+TGG | 0.223848 | 3_2:-84350566 | None:intergenic |
| AATTGCTGTATTTGTGTCTT+TGG | 0.240461 | 3_2:+84351098 | Msa0432190:three_prime_UTR |
| ATTGGATTGGATCATCAATT+AGG | 0.250267 | 3_2:+84351521 | Msa0432190:three_prime_UTR |
| GGTCTTGGTGTCTACCATTC+AGG | 0.255831 | 3_2:+84350592 | Msa0432190:CDS |
| CACATTCATTAGTCTATCTA+AGG | 0.259391 | 3_2:-84351319 | None:intergenic |
| CATTAGTCTATCTAAGGTTT+GGG | 0.279007 | 3_2:-84351313 | None:intergenic |
| GATGTTTGTTACAAATTAAC+TGG | 0.283670 | 3_2:+84350935 | Msa0432190:CDS |
| GCAGTTCATGATGTTGAATA+TGG | 0.287319 | 3_2:+84350707 | Msa0432190:intron |
| CATGATGTTGAATATGGTTT+TGG | 0.298326 | 3_2:+84350713 | Msa0432190:CDS |
| TAAGCAACATAAGATGATTC+AGG | 0.309185 | 3_2:+84352295 | Msa0432190:three_prime_UTR |
| GTAGAGCAGTGTACCTTTAC+TGG | 0.318469 | 3_2:+84352551 | Msa0432190:three_prime_UTR |
| GTAGTATTTGTGGTCAATTA+AGG | 0.319018 | 3_2:-84350336 | None:intergenic |
| ATTACAAAAGTGAAGAAAAT+TGG | 0.319499 | 3_2:-84351207 | None:intergenic |
| TAGAATTGCAATAGCTACTA+TGG | 0.320408 | 3_2:+84352369 | Msa0432190:three_prime_UTR |
| TAAACCTTCAAATATAATTA+AGG | 0.323261 | 3_2:-84352017 | None:intergenic |
| TCATTAGTCTATCTAAGGTT+TGG | 0.332284 | 3_2:-84351314 | None:intergenic |
| ATGTTGTTTAAATTTGTAAC+AGG | 0.349757 | 3_2:+84350484 | Msa0432190:CDS |
| ATATTATGAGTTGATGAAAA+TGG | 0.358842 | 3_2:+84352592 | Msa0432190:three_prime_UTR |
| GTGAGTAAAGATTACTCTCT+TGG | 0.364391 | 3_2:+84351419 | Msa0432190:three_prime_UTR |
| AACGGTTATGCTTATTGGCT+TGG | 0.365043 | 3_2:+84350571 | Msa0432190:CDS |
| TTCTCCTTAATTATATTTGA+AGG | 0.366946 | 3_2:+84352013 | Msa0432190:three_prime_UTR |
| TGTAAACCCAGGACAGTTCT+TGG | 0.374934 | 3_2:-84350777 | None:intergenic |
| TGAAAGAATTGTAGTATTTG+TGG | 0.376510 | 3_2:-84350346 | None:intergenic |
| TGATGAACCTTGAGGATTAG+AGG | 0.385937 | 3_2:-84352161 | None:intergenic |
| TGAAGCAAAGTAGGCACTTT+CGG | 0.387010 | 3_2:+84350222 | Msa0432190:five_prime_UTR |
| AAGGAGAAATTGAGTTATGA+AGG | 0.389005 | 3_2:-84350388 | None:intergenic |
| TGAGTAAAGATTACTCTCTT+GGG | 0.392173 | 3_2:+84351420 | Msa0432190:three_prime_UTR |
| GAATTCTTAAGATGGTCCTT+AGG | 0.393767 | 3_2:-84351149 | None:intergenic |
| TATGCTTATTGGCTTGGTCT+TGG | 0.396983 | 3_2:+84350577 | Msa0432190:CDS |
| TTGGTTCATAGTGTCGGCCT+TGG | 0.398271 | 3_2:-84351701 | None:intergenic |
| GGTGGAGATAGTAGATTTCA+TGG | 0.399069 | 3_2:-84351126 | None:intergenic |
| GAGCTAATATTACTCTCTGT+TGG | 0.402321 | 3_2:+84351480 | Msa0432190:three_prime_UTR |
| AATTCTTAAGATGGTCCTTA+GGG | 0.403949 | 3_2:-84351148 | None:intergenic |
| AAAAGATATTCGAGTATTCA+TGG | 0.405447 | 3_2:+84350841 | Msa0432190:CDS |
| GTGTGTGAAATGAAATTAGA+AGG | 0.410923 | 3_2:-84350407 | None:intergenic |
| ACTAATGAATGTGGCTTAGT+TGG | 0.411811 | 3_2:+84351329 | Msa0432190:three_prime_UTR |
| TCATAGACATTAAGATAAAC+AGG | 0.419830 | 3_2:-84350535 | None:intergenic |
| TGGTTCATAGTGTCGGCCTT+GGG | 0.426986 | 3_2:-84351700 | None:intergenic |
| TTCAAGCATGTGTTTGTTGA+GGG | 0.429493 | 3_2:-84351868 | None:intergenic |
| CTACGTCTATTTCTAAATAT+AGG | 0.436459 | 3_2:-84351245 | None:intergenic |
| TATGATCTCACACCCATTAA+CGG | 0.439304 | 3_2:+84350553 | Msa0432190:CDS |
| ACCTTTGTTTCATTTAAGCC+AGG | 0.453538 | 3_2:-84352061 | None:intergenic |
| CAATAAGCATAACCGTTAAT+GGG | 0.454345 | 3_2:-84350565 | None:intergenic |
| AGCTAATATTACTCTCTGTT+GGG | 0.455868 | 3_2:+84351481 | Msa0432190:three_prime_UTR |
| TAATATTAGCTCATGTGCTT+AGG | 0.457062 | 3_2:-84351469 | None:intergenic |
| TTAAATTTGTAACAGGTCCT+AGG | 0.459653 | 3_2:+84350491 | Msa0432190:CDS |
| AGATAAACAGGAACGGTGCC+TGG | 0.463481 | 3_2:-84350523 | None:intergenic |
| GTGCAACCCAAGAACTGTCC+TGG | 0.468233 | 3_2:+84350770 | Msa0432190:CDS |
| GTATTTCCATTTCCCAGTAA+AGG | 0.468868 | 3_2:-84352564 | None:intergenic |
| TACTCTCTGTTGGGCCATGA+GGG | 0.470256 | 3_2:+84351490 | Msa0432190:three_prime_UTR |
| AGTTGTTTCACTTGTTTACA+AGG | 0.473534 | 3_2:-84351958 | None:intergenic |
| AGTGTACCTTTACTGGGAAA+TGG | 0.474787 | 3_2:+84352558 | Msa0432190:three_prime_UTR |
| GTAAACCCAGGACAGTTCTT+GGG | 0.475359 | 3_2:-84350776 | None:intergenic |
| TAATCTTTACTCACATGCTT+AGG | 0.481361 | 3_2:-84351410 | None:intergenic |
| TTTATTGGTACAACGGATCT+GGG | 0.492318 | 3_2:+84350815 | Msa0432190:CDS |
| GTGCCTGGTTTATTCTTCCT+AGG | 0.495057 | 3_2:-84350508 | None:intergenic |
| TGGACAAAGAATTCTTAAGA+TGG | 0.496798 | 3_2:-84351157 | None:intergenic |
| AAATCAGAAGTCAGTCGAGC+AGG | 0.509704 | 3_2:+84352128 | Msa0432190:three_prime_UTR |
| GCACATGAGAATGACACAAC+GGG | 0.512307 | 3_2:+84350737 | Msa0432190:CDS |
| TTACTTTACTGTTAATGTTG+TGG | 0.518105 | 3_2:-84352227 | None:intergenic |
| AAGTAGGCACTTTCGGCCGC+CGG | 0.520024 | 3_2:+84350229 | Msa0432190:five_prime_UTR |
| CTCTCTGTTGGGCCATGAGG+GGG | 0.521409 | 3_2:+84351492 | Msa0432190:three_prime_UTR |
| ATAGTATATGTGACTGTGGA+TGG | 0.524162 | 3_2:-84350274 | None:intergenic |
| TGTTACCTTGAACTCCTGAA+TGG | 0.525614 | 3_2:-84350606 | None:intergenic |
| GCTTAAATGAAACAAAGGTT+CGG | 0.527769 | 3_2:+84352065 | Msa0432190:three_prime_UTR |
| GTCTACCATTCAGGAGTTCA+AGG | 0.527892 | 3_2:+84350601 | Msa0432190:CDS |
| GAAGGTGGGTGAAGCAAAGT+AGG | 0.527980 | 3_2:+84350213 | Msa0432190:five_prime_UTR |
| GTGAATCGACTTGCAAGACT+TGG | 0.529761 | 3_2:+84350977 | Msa0432190:CDS |
| ATTCAAGCATGTGTTTGTTG+AGG | 0.530309 | 3_2:-84351869 | None:intergenic |
| TTAGGTTAAGACAAGTGAGT+TGG | 0.531672 | 3_2:+84351539 | Msa0432190:three_prime_UTR |
| AAAGAAAAGGAGTGGAAGGT+GGG | 0.540527 | 3_2:+84350199 | Msa0432190:five_prime_UTR |
| AAAAGAAAAGGAGTGGAAGG+TGG | 0.542628 | 3_2:+84350198 | Msa0432190:five_prime_UTR |
| CTGGAAAGTCTATTCCTCGA+TGG | 0.545239 | 3_2:+84350954 | Msa0432190:CDS |
| AAACTAGCTCAAGAGTACTC+TGG | 0.546204 | 3_2:+84350866 | Msa0432190:CDS |
| AAGCAACATAAGATGATTCA+GGG | 0.554705 | 3_2:+84352296 | Msa0432190:three_prime_UTR |
| ACTCTCTGTTGGGCCATGAG+GGG | 0.556912 | 3_2:+84351491 | Msa0432190:three_prime_UTR |
| AGGAGAAATTGAGTTATGAA+GGG | 0.558235 | 3_2:-84350387 | None:intergenic |
| TTACTCTCTGTTGGGCCATG+AGG | 0.562674 | 3_2:+84351489 | Msa0432190:three_prime_UTR |
| TGGAAAGTCTATTCCTCGAT+GGG | 0.567577 | 3_2:+84350955 | Msa0432190:CDS |
| ATTAGTCTATCTAAGGTTTG+GGG | 0.569126 | 3_2:-84351312 | None:intergenic |
| TGCAACCCAAGAACTGTCCT+GGG | 0.570444 | 3_2:+84350771 | Msa0432190:CDS |
| TTGCAATAGCTACTATGGAA+TGG | 0.572548 | 3_2:+84352374 | Msa0432190:three_prime_UTR |
| CCCTGGCTTAAATGAAACAA+AGG | 0.575438 | 3_2:+84352060 | Msa0432190:three_prime_UTR |
| AGTTAAAGTCTCATGTAGGA+TGG | 0.575494 | 3_2:-84351641 | None:intergenic |
| CCTTTGTTTCATTTAAGCCA+GGG | 0.576422 | 3_2:-84352060 | None:intergenic |
| GCACTCCATAGAGTAAAGAC+AGG | 0.578640 | 3_2:+84350125 | None:intergenic |
| TAAAGTTCTTTGTCACTACC+CGG | 0.578729 | 3_2:-84351379 | None:intergenic |
| CACGAGAGGAACAATTATCA+TGG | 0.579884 | 3_2:+84350150 | Msa0432190:five_prime_UTR |
| ATCTACTATCTCCACCCCTA+AGG | 0.581500 | 3_2:+84351133 | Msa0432190:three_prime_UTR |
| TAGGCACTTTCGGCCGCCGG+TGG | 0.583249 | 3_2:+84350232 | Msa0432190:five_prime_UTR |
| GATGCTTCCTCTAATCCTCA+AGG | 0.583321 | 3_2:+84352154 | Msa0432190:three_prime_UTR |
| GTATTTGTGGTCAATTAAGG+AGG | 0.583459 | 3_2:-84350333 | None:intergenic |
| TAAGAAGCAGAACACATTCG+TGG | 0.583815 | 3_2:+84351353 | Msa0432190:three_prime_UTR |
| ATTTCTAAATATAGGAACCC+TGG | 0.588924 | 3_2:-84351237 | None:intergenic |
| CTTAAGATGGTCCTTAGGGG+TGG | 0.589054 | 3_2:-84351144 | None:intergenic |
| AAGAAGCAGAACACATTCGT+GGG | 0.591034 | 3_2:+84351354 | Msa0432190:three_prime_UTR |
| CAATGTCTTGATGAACCTTG+AGG | 0.603172 | 3_2:-84352169 | None:intergenic |
| TAGAGCAGTGTACCTTTACT+GGG | 0.604888 | 3_2:+84352552 | Msa0432190:three_prime_UTR |
| CTTTGTTTCATTTAAGCCAG+GGG | 0.610009 | 3_2:-84352059 | None:intergenic |
| TTAGTCTATCTAAGGTTTGG+GGG | 0.611048 | 3_2:-84351311 | None:intergenic |
| TCACCCAAAATCTTAAAGCA+CGG | 0.611767 | 3_2:+84351573 | Msa0432190:three_prime_UTR |
| GAGTAAAGATTACTCTCTTG+GGG | 0.612515 | 3_2:+84351421 | Msa0432190:three_prime_UTR |
| TAGTCTATCTAAGGTTTGGG+GGG | 0.617053 | 3_2:-84351310 | None:intergenic |
| TGTGAGTTAAAGTCTCATGT+AGG | 0.621539 | 3_2:-84351645 | None:intergenic |
| TGTTAACTAGGTTGTGCTGA+AGG | 0.625185 | 3_2:-84350439 | None:intergenic |
| CTTAGATAGACTAATGAATG+TGG | 0.625748 | 3_2:+84351320 | Msa0432190:three_prime_UTR |
| AGAGCTCTGCAGTCAAAATG+TGG | 0.628483 | 3_2:+84351837 | Msa0432190:three_prime_UTR |
| GACATTAAGATAAACAGGAA+CGG | 0.631998 | 3_2:-84350530 | None:intergenic |
| GGAAATAGTATATGTGACTG+TGG | 0.642092 | 3_2:-84350278 | None:intergenic |
| CAGCATGTATCGGTATCCAC+CGG | 0.647500 | 3_2:-84350248 | None:intergenic |
| AGTAAAGACAGGGACACGAG+AGG | 0.649534 | 3_2:+84350136 | None:intergenic |
| CAGTCTTATAGTTAGTCCCA+AGG | 0.652208 | 3_2:+84351684 | Msa0432190:three_prime_UTR |
| TGGATGGATGCAGCATGTAT+CGG | 0.658330 | 3_2:-84350258 | None:intergenic |
| ATTCTTAAGATGGTCCTTAG+GGG | 0.659117 | 3_2:-84351147 | None:intergenic |
| AGAAGCAGAACACATTCGTG+GGG | 0.666169 | 3_2:+84351355 | Msa0432190:three_prime_UTR |
| ATTGATGATCCAATCCAATG+AGG | 0.677365 | 3_2:-84351517 | None:intergenic |
| CATGTAGGATGGAAGAGTTG+AGG | 0.678031 | 3_2:-84351630 | None:intergenic |
| CACTCCATAGAGTAAAGACA+GGG | 0.678596 | 3_2:+84350126 | None:intergenic |
| AGCACATGAGAATGACACAA+CGG | 0.687804 | 3_2:+84350736 | Msa0432190:CDS |
| CATGTATCGGTATCCACCGG+CGG | 0.689603 | 3_2:-84350245 | None:intergenic |
| GCAAGTCGATTCACCCATCG+AGG | 0.697146 | 3_2:-84350968 | None:intergenic |
| GGTCCTAGGAAGAATAAACC+AGG | 0.698084 | 3_2:+84350505 | Msa0432190:CDS |
| TTTGTTTCATTTAAGCCAGG+GGG | 0.701964 | 3_2:-84352058 | None:intergenic |
| TCGGCAAGATACATCCGACA+AGG | 0.712843 | 3_2:+84352084 | Msa0432190:three_prime_UTR |
| GAAGCAGAACACATTCGTGG+GGG | 0.722910 | 3_2:+84351356 | Msa0432190:three_prime_UTR |
| GCTTTGATTAAAGATGATCG+AGG | 0.732245 | 3_2:-84352196 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATAAAAAATAAAAAGAAA+AGG | + | chr3_2:84350186-84350205 | Msa0432190:five_prime_UTR | 10.0% |
| !! | TATTTAAAAACTTTAAATGT+TGG | + | chr3_2:84351182-84351201 | Msa0432190:three_prime_UTR | 10.0% |
| !!! | TAAATATTTTGATGTTAACT+AGG | - | chr3_2:84350454-84350473 | None:intergenic | 15.0% |
| !! | TAAACCTTCAAATATAATTA+AGG | - | chr3_2:84352020-84352039 | None:intergenic | 15.0% |
| !! | AAAAATAAAAAGAAAAGGAG+TGG | + | chr3_2:84350191-84350210 | Msa0432190:five_prime_UTR | 20.0% |
| !! | CCAATAAAAAGAATAATAGT+GGG | - | chr3_2:84350302-84350321 | None:intergenic | 20.0% |
| !!! | ATGTTGTTTAAATTTGTAAC+AGG | + | chr3_2:84350484-84350503 | Msa0432190:CDS | 20.0% |
| !!! | AATCTACATACATTAGTTTA+AGG | - | chr3_2:84350651-84350670 | None:intergenic | 20.0% |
| !!! | TTCAGAAAATCGATTTTTAT+TGG | + | chr3_2:84350800-84350819 | Msa0432190:CDS | 20.0% |
| !! | ATTACAAAAGTGAAGAAAAT+TGG | - | chr3_2:84351210-84351229 | None:intergenic | 20.0% |
| !! | TTCTCCTTAATTATATTTGA+AGG | + | chr3_2:84352013-84352032 | Msa0432190:three_prime_UTR | 20.0% |
| !! | CCCACTATTATTCTTTTTAT+TGG | + | chr3_2:84350299-84350318 | Msa0432190:five_prime_UTR | 25.0% |
| ! | GCCAATAAAAAGAATAATAG+TGG | - | chr3_2:84350303-84350322 | None:intergenic | 25.0% |
| ! | TGAAAGAATTGTAGTATTTG+TGG | - | chr3_2:84350349-84350368 | None:intergenic | 25.0% |
| ! | TCATAGACATTAAGATAAAC+AGG | - | chr3_2:84350538-84350557 | None:intergenic | 25.0% |
| !! | GTTTAAGGTTAATTAAAAGC+AGG | - | chr3_2:84350636-84350655 | None:intergenic | 25.0% |
| !!! | ATCGATTTTTATTGGTACAA+CGG | + | chr3_2:84350808-84350827 | Msa0432190:CDS | 25.0% |
| ! | AAAAGATATTCGAGTATTCA+TGG | + | chr3_2:84350841-84350860 | Msa0432190:CDS | 25.0% |
| !! | ACAAAAATGGTTGCAATTTT+TGG | - | chr3_2:84350912-84350931 | None:intergenic | 25.0% |
| ! | AACAAACATCATCACAAAAA+TGG | - | chr3_2:84350925-84350944 | None:intergenic | 25.0% |
| !! | GATGTTTGTTACAAATTAAC+TGG | + | chr3_2:84350935-84350954 | Msa0432190:CDS | 25.0% |
| !!! | CTACGTCTATTTCTAAATAT+AGG | - | chr3_2:84351248-84351267 | None:intergenic | 25.0% |
| !!! | ATGTACTTGTTTTATGTGAT+TGG | + | chr3_2:84351915-84351934 | Msa0432190:three_prime_UTR | 25.0% |
| ! | TTACTTTACTGTTAATGTTG+TGG | - | chr3_2:84352230-84352249 | None:intergenic | 25.0% |
| !!! | AAACTCAAACACTATTTTAG+AGG | - | chr3_2:84352271-84352290 | None:intergenic | 25.0% |
| !! | TGCTTTCTTTCTTTTATGAA+TGG | + | chr3_2:84352436-84352455 | Msa0432190:three_prime_UTR | 25.0% |
| !! | GCTTTCTTTCTTTTATGAAT+GGG | + | chr3_2:84352437-84352456 | Msa0432190:three_prime_UTR | 25.0% |
| ATAAAAAGAAAAGGAGTGGA+AGG | + | chr3_2:84350195-84350214 | Msa0432190:five_prime_UTR | 30.0% | |
| GTAGTATTTGTGGTCAATTA+AGG | - | chr3_2:84350339-84350358 | None:intergenic | 30.0% | |
| AGGAGAAATTGAGTTATGAA+GGG | - | chr3_2:84350390-84350409 | None:intergenic | 30.0% | |
| AAGGAGAAATTGAGTTATGA+AGG | - | chr3_2:84350391-84350410 | None:intergenic | 30.0% | |
| GTGTGTGAAATGAAATTAGA+AGG | - | chr3_2:84350410-84350429 | None:intergenic | 30.0% | |
| TTAAATTTGTAACAGGTCCT+AGG | + | chr3_2:84350491-84350510 | Msa0432190:CDS | 30.0% | |
| GACATTAAGATAAACAGGAA+CGG | - | chr3_2:84350533-84350552 | None:intergenic | 30.0% | |
| CAATAAGCATAACCGTTAAT+GGG | - | chr3_2:84350568-84350587 | None:intergenic | 30.0% | |
| ! | CATGATGTTGAATATGGTTT+TGG | + | chr3_2:84350713-84350732 | Msa0432190:CDS | 30.0% |
| AATTGCTGTATTTGTGTCTT+TGG | + | chr3_2:84351098-84351117 | Msa0432190:three_prime_UTR | 30.0% | |
| AATTCTTAAGATGGTCCTTA+GGG | - | chr3_2:84351151-84351170 | None:intergenic | 30.0% | |
| TGGACAAAGAATTCTTAAGA+TGG | - | chr3_2:84351160-84351179 | None:intergenic | 30.0% | |
| ! | ACTTTTGTAATTTAGAGACC+AGG | + | chr3_2:84351219-84351238 | Msa0432190:three_prime_UTR | 30.0% |
| ! | CTTTTGTAATTTAGAGACCA+GGG | + | chr3_2:84351220-84351239 | Msa0432190:three_prime_UTR | 30.0% |
| ATTTCTAAATATAGGAACCC+TGG | - | chr3_2:84351240-84351259 | None:intergenic | 30.0% | |
| ! | ATTAGTCTATCTAAGGTTTG+GGG | - | chr3_2:84351315-84351334 | None:intergenic | 30.0% |
| ! | CATTAGTCTATCTAAGGTTT+GGG | - | chr3_2:84351316-84351335 | None:intergenic | 30.0% |
| ! | TCATTAGTCTATCTAAGGTT+TGG | - | chr3_2:84351317-84351336 | None:intergenic | 30.0% |
| ! | CACATTCATTAGTCTATCTA+AGG | - | chr3_2:84351322-84351341 | None:intergenic | 30.0% |
| CTTAGATAGACTAATGAATG+TGG | + | chr3_2:84351320-84351339 | Msa0432190:three_prime_UTR | 30.0% | |
| TAATCTTTACTCACATGCTT+AGG | - | chr3_2:84351413-84351432 | None:intergenic | 30.0% | |
| TGAGTAAAGATTACTCTCTT+GGG | + | chr3_2:84351420-84351439 | Msa0432190:three_prime_UTR | 30.0% | |
| TAATATTAGCTCATGTGCTT+AGG | - | chr3_2:84351472-84351491 | None:intergenic | 30.0% | |
| AGCTAATATTACTCTCTGTT+GGG | + | chr3_2:84351481-84351500 | Msa0432190:three_prime_UTR | 30.0% | |
| ! | ATTGGATTGGATCATCAATT+AGG | + | chr3_2:84351521-84351540 | Msa0432190:three_prime_UTR | 30.0% |
| !! | TAAGATTTTGGGTGAATATG+TGG | - | chr3_2:84351568-84351587 | None:intergenic | 30.0% |
| !!! | TCTTTTTTGGTTCATAGTGT+CGG | - | chr3_2:84351710-84351729 | None:intergenic | 30.0% |
| ! | AGTTGTTTCACTTGTTTACA+AGG | - | chr3_2:84351961-84351980 | None:intergenic | 30.0% |
| GCTTAAATGAAACAAAGGTT+CGG | + | chr3_2:84352065-84352084 | Msa0432190:three_prime_UTR | 30.0% | |
| ! | TTCTTTTTCTTCAACCTTGT+CGG | - | chr3_2:84352101-84352120 | None:intergenic | 30.0% |
| AGGTTGAAGAAAAAGAAAAG+AGG | + | chr3_2:84352104-84352123 | Msa0432190:three_prime_UTR | 30.0% | |
| TAAGCAACATAAGATGATTC+AGG | + | chr3_2:84352295-84352314 | Msa0432190:three_prime_UTR | 30.0% | |
| AAGCAACATAAGATGATTCA+GGG | + | chr3_2:84352296-84352315 | Msa0432190:three_prime_UTR | 30.0% | |
| TAGAATTGCAATAGCTACTA+TGG | + | chr3_2:84352369-84352388 | Msa0432190:three_prime_UTR | 30.0% | |
| ! | TTTCTTTGTTTCTCCATTCT+TGG | + | chr3_2:84352463-84352482 | Msa0432190:three_prime_UTR | 30.0% |
| TGAAAAATACAGTCCAAGAA+TGG | - | chr3_2:84352479-84352498 | None:intergenic | 30.0% | |
| ! | TTGGACTGTATTTTTCATTC+TGG | + | chr3_2:84352482-84352501 | Msa0432190:three_prime_UTR | 30.0% |
| ATAGTATATGTGACTGTGGA+TGG | - | chr3_2:84350277-84350296 | None:intergenic | 35.0% | |
| GGAAATAGTATATGTGACTG+TGG | - | chr3_2:84350281-84350300 | None:intergenic | 35.0% | |
| GTATTTGTGGTCAATTAAGG+AGG | - | chr3_2:84350336-84350355 | None:intergenic | 35.0% | |
| TATGATCTCACACCCATTAA+CGG | + | chr3_2:84350553-84350572 | Msa0432190:CDS | 35.0% | |
| CCAATAAGCATAACCGTTAA+TGG | - | chr3_2:84350569-84350588 | None:intergenic | 35.0% | |
| CCATTAACGGTTATGCTTAT+TGG | + | chr3_2:84350566-84350585 | Msa0432190:CDS | 35.0% | |
| GCAGTTCATGATGTTGAATA+TGG | + | chr3_2:84350707-84350726 | Msa0432190:intron | 35.0% | |
| ! | GATTTTCTGAATGTAAACCC+AGG | - | chr3_2:84350791-84350810 | None:intergenic | 35.0% |
| ! | TTTTATTGGTACAACGGATC+TGG | + | chr3_2:84350814-84350833 | Msa0432190:CDS | 35.0% |
| TTTATTGGTACAACGGATCT+GGG | + | chr3_2:84350815-84350834 | Msa0432190:CDS | 35.0% | |
| ATTCTTAAGATGGTCCTTAG+GGG | - | chr3_2:84351150-84351169 | None:intergenic | 35.0% | |
| GAATTCTTAAGATGGTCCTT+AGG | - | chr3_2:84351152-84351171 | None:intergenic | 35.0% | |
| ! | TTAGTCTATCTAAGGTTTGG+GGG | - | chr3_2:84351314-84351333 | None:intergenic | 35.0% |
| ACTAATGAATGTGGCTTAGT+TGG | + | chr3_2:84351329-84351348 | Msa0432190:three_prime_UTR | 35.0% | |
| TAAAGTTCTTTGTCACTACC+CGG | - | chr3_2:84351382-84351401 | None:intergenic | 35.0% | |
| GTGAGTAAAGATTACTCTCT+TGG | + | chr3_2:84351419-84351438 | Msa0432190:three_prime_UTR | 35.0% | |
| GAGTAAAGATTACTCTCTTG+GGG | + | chr3_2:84351421-84351440 | Msa0432190:three_prime_UTR | 35.0% | |
| GAGCTAATATTACTCTCTGT+TGG | + | chr3_2:84351480-84351499 | Msa0432190:three_prime_UTR | 35.0% | |
| ! | ATTGATGATCCAATCCAATG+AGG | - | chr3_2:84351520-84351539 | None:intergenic | 35.0% |
| TTAGGTTAAGACAAGTGAGT+TGG | + | chr3_2:84351539-84351558 | Msa0432190:three_prime_UTR | 35.0% | |
| TCACCCAAAATCTTAAAGCA+CGG | + | chr3_2:84351573-84351592 | Msa0432190:three_prime_UTR | 35.0% | |
| !!! | ACTCCGTGCTTTAAGATTTT+GGG | - | chr3_2:84351579-84351598 | None:intergenic | 35.0% |
| !!! | AACTCCGTGCTTTAAGATTT+TGG | - | chr3_2:84351580-84351599 | None:intergenic | 35.0% |
| ATCTTAAAGCACGGAGTTTA+TGG | + | chr3_2:84351582-84351601 | Msa0432190:three_prime_UTR | 35.0% | |
| AGTTAAAGTCTCATGTAGGA+TGG | - | chr3_2:84351644-84351663 | None:intergenic | 35.0% | |
| TGTGAGTTAAAGTCTCATGT+AGG | - | chr3_2:84351648-84351667 | None:intergenic | 35.0% | |
| !!! | GCACAAAAGTCTGTCTTTTT+TGG | - | chr3_2:84351723-84351742 | None:intergenic | 35.0% |
| ! | TTCAAGCATGTGTTTGTTGA+GGG | - | chr3_2:84351871-84351890 | None:intergenic | 35.0% |
| ! | ATTCAAGCATGTGTTTGTTG+AGG | - | chr3_2:84351872-84351891 | None:intergenic | 35.0% |
| TTTGTTTCATTTAAGCCAGG+GGG | - | chr3_2:84352061-84352080 | None:intergenic | 35.0% | |
| ! | CTTTGTTTCATTTAAGCCAG+GGG | - | chr3_2:84352062-84352081 | None:intergenic | 35.0% |
| ! | CCTTTGTTTCATTTAAGCCA+GGG | - | chr3_2:84352063-84352082 | None:intergenic | 35.0% |
| ! | ACCTTTGTTTCATTTAAGCC+AGG | - | chr3_2:84352064-84352083 | None:intergenic | 35.0% |
| GCTTTGATTAAAGATGATCG+AGG | - | chr3_2:84352199-84352218 | None:intergenic | 35.0% | |
| TTGCAATAGCTACTATGGAA+TGG | + | chr3_2:84352374-84352393 | Msa0432190:three_prime_UTR | 35.0% | |
| GTATTTCCATTTCCCAGTAA+AGG | - | chr3_2:84352567-84352586 | None:intergenic | 35.0% | |
| CACGAGAGGAACAATTATCA+TGG | + | chr3_2:84350150-84350169 | Msa0432190:five_prime_UTR | 40.0% | |
| AAAAGAAAAGGAGTGGAAGG+TGG | + | chr3_2:84350198-84350217 | Msa0432190:five_prime_UTR | 40.0% | |
| AAAGAAAAGGAGTGGAAGGT+GGG | + | chr3_2:84350199-84350218 | Msa0432190:five_prime_UTR | 40.0% | |
| TGAAGCAAAGTAGGCACTTT+CGG | + | chr3_2:84350222-84350241 | Msa0432190:five_prime_UTR | 40.0% | |
| TGTTAACTAGGTTGTGCTGA+AGG | - | chr3_2:84350442-84350461 | None:intergenic | 40.0% | |
| ! | AACGGTTATGCTTATTGGCT+TGG | + | chr3_2:84350571-84350590 | Msa0432190:CDS | 40.0% |
| !! | TATGCTTATTGGCTTGGTCT+TGG | + | chr3_2:84350577-84350596 | Msa0432190:CDS | 40.0% |
| TGTTACCTTGAACTCCTGAA+TGG | - | chr3_2:84350609-84350628 | None:intergenic | 40.0% | |
| AGCACATGAGAATGACACAA+CGG | + | chr3_2:84350736-84350755 | Msa0432190:CDS | 40.0% | |
| !! | AAACTAGCTCAAGAGTACTC+TGG | + | chr3_2:84350866-84350885 | Msa0432190:CDS | 40.0% |
| TGGAAAGTCTATTCCTCGAT+GGG | + | chr3_2:84350955-84350974 | Msa0432190:CDS | 40.0% | |
| GGTGGAGATAGTAGATTTCA+TGG | - | chr3_2:84351129-84351148 | None:intergenic | 40.0% | |
| ! | TAGTCTATCTAAGGTTTGGG+GGG | - | chr3_2:84351313-84351332 | None:intergenic | 40.0% |
| TAAGAAGCAGAACACATTCG+TGG | + | chr3_2:84351353-84351372 | Msa0432190:three_prime_UTR | 40.0% | |
| AAGAAGCAGAACACATTCGT+GGG | + | chr3_2:84351354-84351373 | Msa0432190:three_prime_UTR | 40.0% | |
| ! | CAGTCTTATAGTTAGTCCCA+AGG | + | chr3_2:84351684-84351703 | Msa0432190:three_prime_UTR | 40.0% |
| CCCTGGCTTAAATGAAACAA+AGG | + | chr3_2:84352060-84352079 | Msa0432190:three_prime_UTR | 40.0% | |
| TGATGAACCTTGAGGATTAG+AGG | - | chr3_2:84352164-84352183 | None:intergenic | 40.0% | |
| CAATGTCTTGATGAACCTTG+AGG | - | chr3_2:84352172-84352191 | None:intergenic | 40.0% | |
| TAGAGCAGTGTACCTTTACT+GGG | + | chr3_2:84352552-84352571 | Msa0432190:three_prime_UTR | 40.0% | |
| AGTGTACCTTTACTGGGAAA+TGG | + | chr3_2:84352558-84352577 | Msa0432190:three_prime_UTR | 40.0% | |
| TGGATGGATGCAGCATGTAT+CGG | - | chr3_2:84350261-84350280 | None:intergenic | 45.0% | |
| GGTCCTAGGAAGAATAAACC+AGG | + | chr3_2:84350505-84350524 | Msa0432190:CDS | 45.0% | |
| GTGCCTGGTTTATTCTTCCT+AGG | - | chr3_2:84350511-84350530 | None:intergenic | 45.0% | |
| GTCTACCATTCAGGAGTTCA+AGG | + | chr3_2:84350601-84350620 | Msa0432190:CDS | 45.0% | |
| GCACATGAGAATGACACAAC+GGG | + | chr3_2:84350737-84350756 | Msa0432190:CDS | 45.0% | |
| GTAAACCCAGGACAGTTCTT+GGG | - | chr3_2:84350779-84350798 | None:intergenic | 45.0% | |
| TGTAAACCCAGGACAGTTCT+TGG | - | chr3_2:84350780-84350799 | None:intergenic | 45.0% | |
| CTGGAAAGTCTATTCCTCGA+TGG | + | chr3_2:84350954-84350973 | Msa0432190:CDS | 45.0% | |
| !! | GTGAATCGACTTGCAAGACT+TGG | + | chr3_2:84350977-84350996 | Msa0432190:CDS | 45.0% |
| ATCTACTATCTCCACCCCTA+AGG | + | chr3_2:84351133-84351152 | Msa0432190:three_prime_UTR | 45.0% | |
| AGAAGCAGAACACATTCGTG+GGG | + | chr3_2:84351355-84351374 | Msa0432190:three_prime_UTR | 45.0% | |
| CATGTAGGATGGAAGAGTTG+AGG | - | chr3_2:84351633-84351652 | None:intergenic | 45.0% | |
| AGAGCTCTGCAGTCAAAATG+TGG | + | chr3_2:84351837-84351856 | Msa0432190:three_prime_UTR | 45.0% | |
| AAATCAGAAGTCAGTCGAGC+AGG | + | chr3_2:84352128-84352147 | Msa0432190:three_prime_UTR | 45.0% | |
| GATGCTTCCTCTAATCCTCA+AGG | + | chr3_2:84352154-84352173 | Msa0432190:three_prime_UTR | 45.0% | |
| GTAGAGCAGTGTACCTTTAC+TGG | + | chr3_2:84352551-84352570 | Msa0432190:three_prime_UTR | 45.0% | |
| !!! | ATTTAAAGTTTTTAAATAAT+TGG | - | chr3_2:84351180-84351199 | None:intergenic | 5.0% |
| GAAGGTGGGTGAAGCAAAGT+AGG | + | chr3_2:84350213-84350232 | Msa0432190:five_prime_UTR | 50.0% | |
| ! | CAGCATGTATCGGTATCCAC+CGG | - | chr3_2:84350251-84350270 | None:intergenic | 50.0% |
| AGATAAACAGGAACGGTGCC+TGG | - | chr3_2:84350526-84350545 | None:intergenic | 50.0% | |
| !! | GGTCTTGGTGTCTACCATTC+AGG | + | chr3_2:84350592-84350611 | Msa0432190:CDS | 50.0% |
| TGCAACCCAAGAACTGTCCT+GGG | + | chr3_2:84350771-84350790 | Msa0432190:CDS | 50.0% | |
| CTTAAGATGGTCCTTAGGGG+TGG | - | chr3_2:84351147-84351166 | None:intergenic | 50.0% | |
| GAAGCAGAACACATTCGTGG+GGG | + | chr3_2:84351356-84351375 | Msa0432190:three_prime_UTR | 50.0% | |
| TTACTCTCTGTTGGGCCATG+AGG | + | chr3_2:84351489-84351508 | Msa0432190:three_prime_UTR | 50.0% | |
| TACTCTCTGTTGGGCCATGA+GGG | + | chr3_2:84351490-84351509 | Msa0432190:three_prime_UTR | 50.0% | |
| !! | TGGTTCATAGTGTCGGCCTT+GGG | - | chr3_2:84351703-84351722 | None:intergenic | 50.0% |
| !! | TTGGTTCATAGTGTCGGCCT+TGG | - | chr3_2:84351704-84351723 | None:intergenic | 50.0% |
| TCGGCAAGATACATCCGACA+AGG | + | chr3_2:84352084-84352103 | Msa0432190:three_prime_UTR | 50.0% | |
| ! | CATGTATCGGTATCCACCGG+CGG | - | chr3_2:84350248-84350267 | None:intergenic | 55.0% |
| GTGCAACCCAAGAACTGTCC+TGG | + | chr3_2:84350770-84350789 | Msa0432190:CDS | 55.0% | |
| ! | GCAAGTCGATTCACCCATCG+AGG | - | chr3_2:84350971-84350990 | None:intergenic | 55.0% |
| ACTCTCTGTTGGGCCATGAG+GGG | + | chr3_2:84351491-84351510 | Msa0432190:three_prime_UTR | 55.0% | |
| AAGTAGGCACTTTCGGCCGC+CGG | + | chr3_2:84350229-84350248 | Msa0432190:five_prime_UTR | 60.0% | |
| CAGAACACATTCGTGGGGGC+CGG | + | chr3_2:84351360-84351379 | Msa0432190:three_prime_UTR | 60.0% | |
| AGAACACATTCGTGGGGGCC+GGG | + | chr3_2:84351361-84351380 | Msa0432190:three_prime_UTR | 60.0% | |
| CTCTCTGTTGGGCCATGAGG+GGG | + | chr3_2:84351492-84351511 | Msa0432190:three_prime_UTR | 60.0% | |
| TCCAATGAGGCTCCCCCTCA+TGG | - | chr3_2:84351507-84351526 | None:intergenic | 60.0% | |
| GAGGGGGAGCCTCATTGGAT+TGG | + | chr3_2:84351508-84351527 | Msa0432190:three_prime_UTR | 60.0% | |
| TGCAACTGCGTTCTTCCCCC+TGG | + | chr3_2:84352043-84352062 | Msa0432190:three_prime_UTR | 60.0% | |
| GCCATGAGGGGGAGCCTCAT+TGG | + | chr3_2:84351503-84351522 | Msa0432190:three_prime_UTR | 65.0% | |
| TAGGCACTTTCGGCCGCCGG+TGG | + | chr3_2:84350232-84350251 | Msa0432190:five_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 84350137 | 84352611 | 84350137 | ID=Msa0432190;Name=Msa0432190 |
| chr3_2 | mRNA | 84350137 | 84352611 | 84350137 | ID=Msa0432190-mRNA-1;Parent=Msa0432190;Name=Msa0432190-mRNA-1;_AED=0.00;_eAED=0.00;_QI=347|1|1|1|1|1|2|1605|144 |
| chr3_2 | exon | 84350137 | 84350622 | 84350137 | ID=Msa0432190-mRNA-1:exon:23807;Parent=Msa0432190-mRNA-1 |
| chr3_2 | exon | 84350711 | 84352611 | 84350711 | ID=Msa0432190-mRNA-1:exon:23808;Parent=Msa0432190-mRNA-1 |
| chr3_2 | five_prime_UTR | 84350137 | 84350483 | 84350137 | ID=Msa0432190-mRNA-1:five_prime_utr;Parent=Msa0432190-mRNA-1 |
| chr3_2 | CDS | 84350484 | 84350622 | 84350484 | ID=Msa0432190-mRNA-1:cds;Parent=Msa0432190-mRNA-1 |
| chr3_2 | CDS | 84350711 | 84351006 | 84350711 | ID=Msa0432190-mRNA-1:cds;Parent=Msa0432190-mRNA-1 |
| chr3_2 | three_prime_UTR | 84351007 | 84352611 | 84351007 | ID=Msa0432190-mRNA-1:three_prime_utr;Parent=Msa0432190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
