AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0521040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0521040 MtrunA17_Chr3g0137121 97.902 143 3 0 1 143 1 143 1.23e-104 297
Msa0521040 MtrunA17_Chr1g0149791 81.119 143 27 0 1 143 1 143 1.69e-89 259
Msa0521040 MtrunA17_Chr1g0154681 70.769 130 38 0 14 143 39 168 1.37e-69 210
Msa0521040 MtrunA17_Chr4g0002531 71.318 129 37 0 15 143 25 153 2.08e-67 204
Msa0521040 MtrunA17_Chr1g0162711 65.909 132 45 0 12 143 36 167 3.58e-66 201
Msa0521040 MtrunA17_Chr4g0055821 58.088 136 57 0 9 144 14 149 1.55e-61 188
Msa0521040 MtrunA17_Chr5g0399541 61.905 126 48 0 19 144 25 150 6.97e-61 187
Msa0521040 MtrunA17_Chr4g0063261 61.600 125 48 0 19 143 31 155 1.97e-56 176
Msa0521040 MtrunA17_Chr2g0306871 57.851 121 51 0 24 144 33 153 1.29e-53 168
Msa0521040 MtrunA17_Chr1g0202701 38.298 141 68 5 19 143 4 141 2.75e-23 90.9
Msa0521040 MtrunA17_Chr6g0468771 40.000 110 63 3 36 143 34 142 1.39e-21 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0521040 AT5G25170.1 80.435 138 26 1 6 143 8 144 3.14e-82 241
Msa0521040 AT2G25190.1 75.373 134 33 0 10 143 10 143 1.47e-78 233
Msa0521040 AT1G80690.2 70.504 139 37 1 10 144 4 142 5.26e-70 211
Msa0521040 AT1G80690.1 70.290 138 37 1 10 143 4 141 2.50e-69 209
Msa0521040 AT1G47740.1 70.769 130 38 0 14 143 66 195 4.14e-69 210
Msa0521040 AT1G47740.2 70.769 130 38 0 14 143 66 195 4.14e-69 210
Msa0521040 AT1G47740.3 70.769 130 38 0 14 143 66 195 4.14e-69 210
Msa0521040 AT4G31980.1 67.133 143 47 0 1 143 1 143 4.44e-68 218
Msa0521040 AT4G17486.1 57.576 132 56 0 13 144 22 153 1.91e-62 191
Msa0521040 AT5G47310.1 59.375 128 52 0 17 144 28 155 6.84e-62 190
Msa0521040 AT4G17486.2 57.692 130 55 0 13 142 22 151 7.46e-62 189
Msa0521040 AT5G25170.2 76.768 99 23 0 45 143 2 100 1.25e-54 169
Msa0521040 AT4G25660.1 39.623 106 62 2 39 143 38 142 1.27e-20 84.7
Msa0521040 AT4G25680.1 39.623 106 62 2 39 143 38 142 2.72e-20 84.0
Msa0521040 AT3G07090.2 31.783 129 72 3 19 139 8 128 1.46e-12 63.5
Msa0521040 AT3G07090.1 31.783 129 72 3 19 139 8 128 1.46e-12 63.5

Find 128 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTCGTGCTTTAAGATTT+TGG 0.032210 3_4:-73648348 None:intergenic
CCATTAACGGTTATGCTTAT+TGG 0.129676 3_4:+73647337 Msa0521040:CDS
TTTCTTTGTTTCTCCATTCT+TGG 0.134095 3_4:+73649231 Msa0521040:three_prime_UTR
ATCTTAAAGCACGAAGTTTA+TGG 0.169552 3_4:+73648353 Msa0521040:three_prime_UTR
CCAATAAGCATAACCGTTAA+TGG 0.223848 3_4:-73647337 None:intergenic
AATTGCTGTATTTGTGTCTT+TGG 0.240461 3_4:+73647869 Msa0521040:three_prime_UTR
GGTCTTGGTGTCTACCATTC+AGG 0.255831 3_4:+73647363 Msa0521040:CDS
CACATTCATTAGTCTATCTA+AGG 0.259391 3_4:-73648090 None:intergenic
CATTAGTCTATCTAAGGTTT+GGG 0.279007 3_4:-73648084 None:intergenic
GATGTTTGTTACAAATTAAC+TGG 0.283670 3_4:+73647706 Msa0521040:CDS
GCAGTTCATGATGTTGAATA+TGG 0.287319 3_4:+73647478 Msa0521040:intron
CATGATGTTGAATATGGTTT+TGG 0.298326 3_4:+73647484 Msa0521040:CDS
TAAGCAACATAAGATGATTC+AGG 0.309185 3_4:+73649066 Msa0521040:three_prime_UTR
GTAGAGCAGTGTACCTTTAC+TGG 0.318469 3_4:+73649319 Msa0521040:three_prime_UTR
GTAGTATTTGTGGTCAATTA+AGG 0.319018 3_4:-73647107 None:intergenic
ATTACAAAAGTGAAGAAAAT+TGG 0.319499 3_4:-73647978 None:intergenic
TAGAATTGCAATAGCTACTA+TGG 0.320408 3_4:+73649140 Msa0521040:three_prime_UTR
TAAACCTTCAAATATAATTA+AGG 0.323261 3_4:-73648788 None:intergenic
TCATTAGTCTATCTAAGGTT+TGG 0.332284 3_4:-73648085 None:intergenic
ATGTTGTTTAAATTTGTAAC+AGG 0.349757 3_4:+73647255 Msa0521040:CDS
ATATTATGAGTTGATGAAAA+TGG 0.355546 3_4:+73649360 Msa0521040:three_prime_UTR
GTGAGTAAAGATTACTCTCT+TGG 0.364391 3_4:+73648190 Msa0521040:three_prime_UTR
AACGGTTATGCTTATTGGCT+TGG 0.365043 3_4:+73647342 Msa0521040:CDS
TTCTCCTTAATTATATTTGA+AGG 0.366946 3_4:+73648784 Msa0521040:three_prime_UTR
TGTAAACCCAGGACAGTTCT+TGG 0.374934 3_4:-73647548 None:intergenic
TGATGAACCTTGAGGATTAG+AGG 0.385937 3_4:-73648932 None:intergenic
TGAAGCAAAGTAGGCACTTT+CGG 0.387010 3_4:+73646993 Msa0521040:five_prime_UTR
TGAGTAAAGATTACTCTCTT+GGG 0.392173 3_4:+73648191 Msa0521040:three_prime_UTR
GAATTCTTAAGATGGTCCTT+AGG 0.393767 3_4:-73647920 None:intergenic
TATGCTTATTGGCTTGGTCT+TGG 0.396983 3_4:+73647348 Msa0521040:CDS
TTGGTTCATAGTGTCGGCCT+TGG 0.398271 3_4:-73648472 None:intergenic
GGTGGAGATAGTAGATTTCA+TGG 0.399069 3_4:-73647897 None:intergenic
GAGCTAATATTACTCTCTGT+TGG 0.402321 3_4:+73648251 Msa0521040:three_prime_UTR
AATTCTTAAGATGGTCCTTA+GGG 0.403949 3_4:-73647919 None:intergenic
AAAAGATATTCGAGTATTCA+TGG 0.405447 3_4:+73647612 Msa0521040:CDS
GTGTGTGAAATGAAATTAGA+AGG 0.410923 3_4:-73647178 None:intergenic
AAGGAGAAATTGAATTATGA+AGG 0.411151 3_4:-73647159 None:intergenic
ACTAATGAATGTGGCTTAGT+TGG 0.411811 3_4:+73648100 Msa0521040:three_prime_UTR
TCATAGACATTAAGATAAAC+AGG 0.419830 3_4:-73647306 None:intergenic
TGGTTCATAGTGTCGGCCTT+GGG 0.426986 3_4:-73648471 None:intergenic
TTCAAGCATGTGTTTGTTGA+GGG 0.429493 3_4:-73648639 None:intergenic
ATTGGATTGGATCATCAATT+CGG 0.432407 3_4:+73648292 Msa0521040:three_prime_UTR
CTACGTCTATTTCTAAATAT+AGG 0.436459 3_4:-73648016 None:intergenic
TATGATCTCACACCCATTAA+CGG 0.439304 3_4:+73647324 Msa0521040:CDS
ACCTTTGTTTCATTTAAGCC+AGG 0.453538 3_4:-73648832 None:intergenic
CAATAAGCATAACCGTTAAT+GGG 0.454345 3_4:-73647336 None:intergenic
AGCTAATATTACTCTCTGTT+GGG 0.455868 3_4:+73648252 Msa0521040:three_prime_UTR
TAATATTAGCTCATGTGCTT+AGG 0.457062 3_4:-73648240 None:intergenic
TTAAATTTGTAACAGGTCCT+AGG 0.459653 3_4:+73647262 Msa0521040:CDS
AGATAAACAGGAACGGTGCC+TGG 0.463481 3_4:-73647294 None:intergenic
GTGCAACCCAAGAACTGTCC+TGG 0.468233 3_4:+73647541 Msa0521040:CDS
GTATTTCCATTTCCCAGTAA+AGG 0.468868 3_4:-73649332 None:intergenic
TACTCTCTGTTGGGCCATGA+GGG 0.470256 3_4:+73648261 Msa0521040:three_prime_UTR
AGTTGTTTCACTTGTTTACA+AGG 0.473534 3_4:-73648729 None:intergenic
AGTGTACCTTTACTGGGAAA+TGG 0.474787 3_4:+73649326 Msa0521040:three_prime_UTR
GTAAACCCAGGACAGTTCTT+GGG 0.475359 3_4:-73647547 None:intergenic
TAATCTTTACTCACATGCTT+AGG 0.481361 3_4:-73648181 None:intergenic
TTTATTGGTACAACGGATCT+GGG 0.492318 3_4:+73647586 Msa0521040:CDS
GTGCCTGGTTTATTCTTCCT+AGG 0.495057 3_4:-73647279 None:intergenic
TGGACAAAGAATTCTTAAGA+TGG 0.496798 3_4:-73647928 None:intergenic
TTCGGTTAAGACAAGTGAGT+TGG 0.501060 3_4:+73648310 Msa0521040:three_prime_UTR
AAATCAGAAGTCAGTCGAGC+AGG 0.509704 3_4:+73648899 Msa0521040:three_prime_UTR
GCACATGAGAATGACACAAC+GGG 0.512307 3_4:+73647508 Msa0521040:CDS
TTACTTTACTGTTAATGTTG+TGG 0.518105 3_4:-73648998 None:intergenic
AAGTAGGCACTTTCGGCCGC+CGG 0.520024 3_4:+73647000 Msa0521040:five_prime_UTR
CTCTCTGTTGGGCCATGAGG+GGG 0.521409 3_4:+73648263 Msa0521040:three_prime_UTR
ATAGTATATGTGACTGTGGA+TGG 0.524162 3_4:-73647045 None:intergenic
TGTTACCTTGAACTCCTGAA+TGG 0.525614 3_4:-73647377 None:intergenic
GCTTAAATGAAACAAAGGTT+CGG 0.527769 3_4:+73648836 Msa0521040:three_prime_UTR
GTCTACCATTCAGGAGTTCA+AGG 0.527892 3_4:+73647372 Msa0521040:CDS
GAAGGTGGGTGAAGCAAAGT+AGG 0.527980 3_4:+73646984 Msa0521040:five_prime_UTR
GTGAATCGACTTGCAAGACT+TGG 0.529761 3_4:+73647748 Msa0521040:CDS
ATTCAAGCATGTGTTTGTTG+AGG 0.530309 3_4:-73648640 None:intergenic
AAAGAAAAGGAGTGGAAGGT+GGG 0.540527 3_4:+73646970 Msa0521040:five_prime_UTR
AAAAGAAAAGGAGTGGAAGG+TGG 0.542628 3_4:+73646969 Msa0521040:five_prime_UTR
CTGGAAAGTCTATTCCTCGA+TGG 0.545239 3_4:+73647725 Msa0521040:CDS
AAACTAGCTCAAGAGTACTC+TGG 0.546204 3_4:+73647637 Msa0521040:CDS
AAGCAACATAAGATGATTCA+GGG 0.554705 3_4:+73649067 Msa0521040:three_prime_UTR
ACTCTCTGTTGGGCCATGAG+GGG 0.556912 3_4:+73648262 Msa0521040:three_prime_UTR
TTACTCTCTGTTGGGCCATG+AGG 0.562674 3_4:+73648260 Msa0521040:three_prime_UTR
AGGAGAAATTGAATTATGAA+GGG 0.566240 3_4:-73647158 None:intergenic
TGGAAAGTCTATTCCTCGAT+GGG 0.567577 3_4:+73647726 Msa0521040:CDS
ATTAGTCTATCTAAGGTTTG+GGG 0.569126 3_4:-73648083 None:intergenic
TGCAACCCAAGAACTGTCCT+GGG 0.570444 3_4:+73647542 Msa0521040:CDS
TTGCAATAGCTACTATGGAA+TGG 0.572548 3_4:+73649145 Msa0521040:three_prime_UTR
CCCTGGCTTAAATGAAACAA+AGG 0.575438 3_4:+73648831 Msa0521040:three_prime_UTR
AGTTAAAGTCTCATGTAGGA+TGG 0.575494 3_4:-73648412 None:intergenic
CCTTTGTTTCATTTAAGCCA+GGG 0.576422 3_4:-73648831 None:intergenic
GCACTCCATAGAGTAAAGAC+AGG 0.578640 3_4:+73646896 None:intergenic
TAAAGTTCTTTGTCACTACC+CGG 0.578729 3_4:-73648150 None:intergenic
CACGAGAGGAACAATTATCA+TGG 0.579884 3_4:+73646921 Msa0521040:five_prime_UTR
ATCTACTATCTCCACCCCTA+AGG 0.581500 3_4:+73647904 Msa0521040:three_prime_UTR
TAGGCACTTTCGGCCGCCGG+TGG 0.583249 3_4:+73647003 Msa0521040:five_prime_UTR
GATGCTTCCTCTAATCCTCA+AGG 0.583321 3_4:+73648925 Msa0521040:three_prime_UTR
GTATTTGTGGTCAATTAAGG+AGG 0.583459 3_4:-73647104 None:intergenic
TAAGAAGCAGAACACATTCG+TGG 0.583815 3_4:+73648124 Msa0521040:three_prime_UTR
ATTTCTAAATATAGGAACCC+TGG 0.588924 3_4:-73648008 None:intergenic
CTTAAGATGGTCCTTAGGGG+TGG 0.589054 3_4:-73647915 None:intergenic
AAGAAGCAGAACACATTCGT+GGG 0.591034 3_4:+73648125 Msa0521040:three_prime_UTR
CAATGTCTTGATGAACCTTG+AGG 0.603172 3_4:-73648940 None:intergenic
TAGAGCAGTGTACCTTTACT+GGG 0.604888 3_4:+73649320 Msa0521040:three_prime_UTR
CTTTGTTTCATTTAAGCCAG+GGG 0.610009 3_4:-73648830 None:intergenic
TTAGTCTATCTAAGGTTTGG+GGG 0.611048 3_4:-73648082 None:intergenic
GAGTAAAGATTACTCTCTTG+GGG 0.612515 3_4:+73648192 Msa0521040:three_prime_UTR
TAGTCTATCTAAGGTTTGGG+GGG 0.617053 3_4:-73648081 None:intergenic
TGTGAGTTAAAGTCTCATGT+AGG 0.621539 3_4:-73648416 None:intergenic
TGTTAACTAGGTTGTGCTGA+AGG 0.625185 3_4:-73647210 None:intergenic
CTTAGATAGACTAATGAATG+TGG 0.625748 3_4:+73648091 Msa0521040:three_prime_UTR
AGAGCTCTGCAGTCAAAATG+TGG 0.628483 3_4:+73648608 Msa0521040:three_prime_UTR
GACATTAAGATAAACAGGAA+CGG 0.631998 3_4:-73647301 None:intergenic
GGAAATAGTATATGTGACTG+TGG 0.642092 3_4:-73647049 None:intergenic
CAGCATGTATCGGTATCCAC+CGG 0.647500 3_4:-73647019 None:intergenic
AGTAAAGACAGGGACACGAG+AGG 0.649534 3_4:+73646907 None:intergenic
CAGTCTTATAGTTAGTCCCA+AGG 0.652208 3_4:+73648455 Msa0521040:three_prime_UTR
TGGATGGATGCAGCATGTAT+CGG 0.658330 3_4:-73647029 None:intergenic
ATTCTTAAGATGGTCCTTAG+GGG 0.659117 3_4:-73647918 None:intergenic
AGAAGCAGAACACATTCGTG+GGG 0.666169 3_4:+73648126 Msa0521040:three_prime_UTR
CATGTAGGATGGAAGAGTTG+AGG 0.678031 3_4:-73648401 None:intergenic
CACTCCATAGAGTAAAGACA+GGG 0.678596 3_4:+73646897 None:intergenic
AGCACATGAGAATGACACAA+CGG 0.687804 3_4:+73647507 Msa0521040:CDS
ATTGATGATCCAATCCAATG+AGG 0.688674 3_4:-73648288 None:intergenic
CATGTATCGGTATCCACCGG+CGG 0.689603 3_4:-73647016 None:intergenic
GCAAGTCGATTCACCCATCG+AGG 0.697146 3_4:-73647739 None:intergenic
GGTCCTAGGAAGAATAAACC+AGG 0.698084 3_4:+73647276 Msa0521040:CDS
TTTGTTTCATTTAAGCCAGG+GGG 0.701964 3_4:-73648829 None:intergenic
TCGGCAAGATACATCCGACA+AGG 0.712843 3_4:+73648855 Msa0521040:three_prime_UTR
GAAGCAGAACACATTCGTGG+GGG 0.722910 3_4:+73648127 Msa0521040:three_prime_UTR
GCTTTGATTAAAGATGATCG+AGG 0.732245 3_4:-73648967 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATAAAAAATAAAAAGAAA+AGG + chr3_4:73646957-73646976 Msa0521040:five_prime_UTR 10.0%
!! TATTTAAAAACTTTAAATGT+TGG + chr3_4:73647953-73647972 Msa0521040:three_prime_UTR 10.0%
!!! TAAATATTTTGATGTTAACT+AGG - chr3_4:73647225-73647244 None:intergenic 15.0%
!! TAAACCTTCAAATATAATTA+AGG - chr3_4:73648791-73648810 None:intergenic 15.0%
!! AAAAATAAAAAGAAAAGGAG+TGG + chr3_4:73646962-73646981 Msa0521040:five_prime_UTR 20.0%
!! TGAAAAAATTGTAGTATTTG+TGG - chr3_4:73647120-73647139 None:intergenic 20.0%
!!! ATGTTGTTTAAATTTGTAAC+AGG + chr3_4:73647255-73647274 Msa0521040:CDS 20.0%
!!! AATCTACATACATTAGTTTA+AGG - chr3_4:73647422-73647441 None:intergenic 20.0%
!!! TTCAGAAAATCGATTTTTAT+TGG + chr3_4:73647571-73647590 Msa0521040:CDS 20.0%
!! ATTACAAAAGTGAAGAAAAT+TGG - chr3_4:73647981-73648000 None:intergenic 20.0%
!! TTCTCCTTAATTATATTTGA+AGG + chr3_4:73648784-73648803 Msa0521040:three_prime_UTR 20.0%
! CCAAGAAAAAGAATAATAGT+GGG - chr3_4:73647073-73647092 None:intergenic 25.0%
! AGGAGAAATTGAATTATGAA+GGG - chr3_4:73647161-73647180 None:intergenic 25.0%
! AAGGAGAAATTGAATTATGA+AGG - chr3_4:73647162-73647181 None:intergenic 25.0%
! TCATAGACATTAAGATAAAC+AGG - chr3_4:73647309-73647328 None:intergenic 25.0%
!! GTTTAAGGTTAATTAAAAGC+AGG - chr3_4:73647407-73647426 None:intergenic 25.0%
!!! ATCGATTTTTATTGGTACAA+CGG + chr3_4:73647579-73647598 Msa0521040:CDS 25.0%
! AAAAGATATTCGAGTATTCA+TGG + chr3_4:73647612-73647631 Msa0521040:CDS 25.0%
!! ACAAAAATGGTTGCAATTTT+TGG - chr3_4:73647683-73647702 None:intergenic 25.0%
! AACAAACATCATCACAAAAA+TGG - chr3_4:73647696-73647715 None:intergenic 25.0%
!! GATGTTTGTTACAAATTAAC+TGG + chr3_4:73647706-73647725 Msa0521040:CDS 25.0%
!!! CTACGTCTATTTCTAAATAT+AGG - chr3_4:73648019-73648038 None:intergenic 25.0%
!!! ATGTACTTGTTTTATGTGAT+TGG + chr3_4:73648686-73648705 Msa0521040:three_prime_UTR 25.0%
! TTACTTTACTGTTAATGTTG+TGG - chr3_4:73649001-73649020 None:intergenic 25.0%
!!! AAACTCAAACACTATTTTAG+AGG - chr3_4:73649042-73649061 None:intergenic 25.0%
!! TGCTTTCTTTCTTTTATGAA+TGG + chr3_4:73649204-73649223 Msa0521040:three_prime_UTR 25.0%
!! GCTTTCTTTCTTTTATGAAT+GGG + chr3_4:73649205-73649224 Msa0521040:three_prime_UTR 25.0%
ATAAAAAGAAAAGGAGTGGA+AGG + chr3_4:73646966-73646985 Msa0521040:five_prime_UTR 30.0%
! CCCACTATTATTCTTTTTCT+TGG + chr3_4:73647070-73647089 Msa0521040:five_prime_UTR 30.0%
GCCAAGAAAAAGAATAATAG+TGG - chr3_4:73647074-73647093 None:intergenic 30.0%
GTAGTATTTGTGGTCAATTA+AGG - chr3_4:73647110-73647129 None:intergenic 30.0%
GTGTGTGAAATGAAATTAGA+AGG - chr3_4:73647181-73647200 None:intergenic 30.0%
TTAAATTTGTAACAGGTCCT+AGG + chr3_4:73647262-73647281 Msa0521040:CDS 30.0%
GACATTAAGATAAACAGGAA+CGG - chr3_4:73647304-73647323 None:intergenic 30.0%
CAATAAGCATAACCGTTAAT+GGG - chr3_4:73647339-73647358 None:intergenic 30.0%
! CATGATGTTGAATATGGTTT+TGG + chr3_4:73647484-73647503 Msa0521040:CDS 30.0%
AATTGCTGTATTTGTGTCTT+TGG + chr3_4:73647869-73647888 Msa0521040:three_prime_UTR 30.0%
AATTCTTAAGATGGTCCTTA+GGG - chr3_4:73647922-73647941 None:intergenic 30.0%
TGGACAAAGAATTCTTAAGA+TGG - chr3_4:73647931-73647950 None:intergenic 30.0%
! ACTTTTGTAATTTAGAGACC+AGG + chr3_4:73647990-73648009 Msa0521040:three_prime_UTR 30.0%
! CTTTTGTAATTTAGAGACCA+GGG + chr3_4:73647991-73648010 Msa0521040:three_prime_UTR 30.0%
ATTTCTAAATATAGGAACCC+TGG - chr3_4:73648011-73648030 None:intergenic 30.0%
! ATTAGTCTATCTAAGGTTTG+GGG - chr3_4:73648086-73648105 None:intergenic 30.0%
! CATTAGTCTATCTAAGGTTT+GGG - chr3_4:73648087-73648106 None:intergenic 30.0%
! TCATTAGTCTATCTAAGGTT+TGG - chr3_4:73648088-73648107 None:intergenic 30.0%
! CACATTCATTAGTCTATCTA+AGG - chr3_4:73648093-73648112 None:intergenic 30.0%
CTTAGATAGACTAATGAATG+TGG + chr3_4:73648091-73648110 Msa0521040:three_prime_UTR 30.0%
TAATCTTTACTCACATGCTT+AGG - chr3_4:73648184-73648203 None:intergenic 30.0%
TGAGTAAAGATTACTCTCTT+GGG + chr3_4:73648191-73648210 Msa0521040:three_prime_UTR 30.0%
TAATATTAGCTCATGTGCTT+AGG - chr3_4:73648243-73648262 None:intergenic 30.0%
AGCTAATATTACTCTCTGTT+GGG + chr3_4:73648252-73648271 Msa0521040:three_prime_UTR 30.0%
! ATTGGATTGGATCATCAATT+CGG + chr3_4:73648292-73648311 Msa0521040:three_prime_UTR 30.0%
!! TAAGATTTTGGGTGAATATG+TGG - chr3_4:73648339-73648358 None:intergenic 30.0%
!!! ACTTCGTGCTTTAAGATTTT+GGG - chr3_4:73648350-73648369 None:intergenic 30.0%
!!! AACTTCGTGCTTTAAGATTT+TGG - chr3_4:73648351-73648370 None:intergenic 30.0%
ATCTTAAAGCACGAAGTTTA+TGG + chr3_4:73648353-73648372 Msa0521040:three_prime_UTR 30.0%
!!! TCTTTTTTGGTTCATAGTGT+CGG - chr3_4:73648481-73648500 None:intergenic 30.0%
! AGTTGTTTCACTTGTTTACA+AGG - chr3_4:73648732-73648751 None:intergenic 30.0%
GCTTAAATGAAACAAAGGTT+CGG + chr3_4:73648836-73648855 Msa0521040:three_prime_UTR 30.0%
! TTCTTTTTCTTCAACCTTGT+CGG - chr3_4:73648872-73648891 None:intergenic 30.0%
AGGTTGAAGAAAAAGAAAAG+AGG + chr3_4:73648875-73648894 Msa0521040:three_prime_UTR 30.0%
TAAGCAACATAAGATGATTC+AGG + chr3_4:73649066-73649085 Msa0521040:three_prime_UTR 30.0%
AAGCAACATAAGATGATTCA+GGG + chr3_4:73649067-73649086 Msa0521040:three_prime_UTR 30.0%
TAGAATTGCAATAGCTACTA+TGG + chr3_4:73649140-73649159 Msa0521040:three_prime_UTR 30.0%
! TTTCTTTGTTTCTCCATTCT+TGG + chr3_4:73649231-73649250 Msa0521040:three_prime_UTR 30.0%
TGAAAAATACAGTCCAAGAA+TGG - chr3_4:73649247-73649266 None:intergenic 30.0%
! TTGGACTGTATTTTTCATTC+TGG + chr3_4:73649250-73649269 Msa0521040:three_prime_UTR 30.0%
ATAGTATATGTGACTGTGGA+TGG - chr3_4:73647048-73647067 None:intergenic 35.0%
GGAAATAGTATATGTGACTG+TGG - chr3_4:73647052-73647071 None:intergenic 35.0%
GTATTTGTGGTCAATTAAGG+AGG - chr3_4:73647107-73647126 None:intergenic 35.0%
TATGATCTCACACCCATTAA+CGG + chr3_4:73647324-73647343 Msa0521040:CDS 35.0%
CCAATAAGCATAACCGTTAA+TGG - chr3_4:73647340-73647359 None:intergenic 35.0%
CCATTAACGGTTATGCTTAT+TGG + chr3_4:73647337-73647356 Msa0521040:CDS 35.0%
GCAGTTCATGATGTTGAATA+TGG + chr3_4:73647478-73647497 Msa0521040:intron 35.0%
! GATTTTCTGAATGTAAACCC+AGG - chr3_4:73647562-73647581 None:intergenic 35.0%
! TTTTATTGGTACAACGGATC+TGG + chr3_4:73647585-73647604 Msa0521040:CDS 35.0%
TTTATTGGTACAACGGATCT+GGG + chr3_4:73647586-73647605 Msa0521040:CDS 35.0%
ATTCTTAAGATGGTCCTTAG+GGG - chr3_4:73647921-73647940 None:intergenic 35.0%
GAATTCTTAAGATGGTCCTT+AGG - chr3_4:73647923-73647942 None:intergenic 35.0%
! TTAGTCTATCTAAGGTTTGG+GGG - chr3_4:73648085-73648104 None:intergenic 35.0%
ACTAATGAATGTGGCTTAGT+TGG + chr3_4:73648100-73648119 Msa0521040:three_prime_UTR 35.0%
TAAAGTTCTTTGTCACTACC+CGG - chr3_4:73648153-73648172 None:intergenic 35.0%
GTGAGTAAAGATTACTCTCT+TGG + chr3_4:73648190-73648209 Msa0521040:three_prime_UTR 35.0%
GAGTAAAGATTACTCTCTTG+GGG + chr3_4:73648192-73648211 Msa0521040:three_prime_UTR 35.0%
GAGCTAATATTACTCTCTGT+TGG + chr3_4:73648251-73648270 Msa0521040:three_prime_UTR 35.0%
! ATTGATGATCCAATCCAATG+AGG - chr3_4:73648291-73648310 None:intergenic 35.0%
AGTTAAAGTCTCATGTAGGA+TGG - chr3_4:73648415-73648434 None:intergenic 35.0%
TGTGAGTTAAAGTCTCATGT+AGG - chr3_4:73648419-73648438 None:intergenic 35.0%
!!! GCACAAAAGTCTGTCTTTTT+TGG - chr3_4:73648494-73648513 None:intergenic 35.0%
! TTCAAGCATGTGTTTGTTGA+GGG - chr3_4:73648642-73648661 None:intergenic 35.0%
! ATTCAAGCATGTGTTTGTTG+AGG - chr3_4:73648643-73648662 None:intergenic 35.0%
TTTGTTTCATTTAAGCCAGG+GGG - chr3_4:73648832-73648851 None:intergenic 35.0%
! CTTTGTTTCATTTAAGCCAG+GGG - chr3_4:73648833-73648852 None:intergenic 35.0%
! CCTTTGTTTCATTTAAGCCA+GGG - chr3_4:73648834-73648853 None:intergenic 35.0%
! ACCTTTGTTTCATTTAAGCC+AGG - chr3_4:73648835-73648854 None:intergenic 35.0%
GCTTTGATTAAAGATGATCG+AGG - chr3_4:73648970-73648989 None:intergenic 35.0%
TTGCAATAGCTACTATGGAA+TGG + chr3_4:73649145-73649164 Msa0521040:three_prime_UTR 35.0%
GTATTTCCATTTCCCAGTAA+AGG - chr3_4:73649335-73649354 None:intergenic 35.0%
CACGAGAGGAACAATTATCA+TGG + chr3_4:73646921-73646940 Msa0521040:five_prime_UTR 40.0%
AAAAGAAAAGGAGTGGAAGG+TGG + chr3_4:73646969-73646988 Msa0521040:five_prime_UTR 40.0%
AAAGAAAAGGAGTGGAAGGT+GGG + chr3_4:73646970-73646989 Msa0521040:five_prime_UTR 40.0%
TGAAGCAAAGTAGGCACTTT+CGG + chr3_4:73646993-73647012 Msa0521040:five_prime_UTR 40.0%
TGTTAACTAGGTTGTGCTGA+AGG - chr3_4:73647213-73647232 None:intergenic 40.0%
! AACGGTTATGCTTATTGGCT+TGG + chr3_4:73647342-73647361 Msa0521040:CDS 40.0%
!! TATGCTTATTGGCTTGGTCT+TGG + chr3_4:73647348-73647367 Msa0521040:CDS 40.0%
TGTTACCTTGAACTCCTGAA+TGG - chr3_4:73647380-73647399 None:intergenic 40.0%
AGCACATGAGAATGACACAA+CGG + chr3_4:73647507-73647526 Msa0521040:CDS 40.0%
!! AAACTAGCTCAAGAGTACTC+TGG + chr3_4:73647637-73647656 Msa0521040:CDS 40.0%
TGGAAAGTCTATTCCTCGAT+GGG + chr3_4:73647726-73647745 Msa0521040:CDS 40.0%
GGTGGAGATAGTAGATTTCA+TGG - chr3_4:73647900-73647919 None:intergenic 40.0%
! TAGTCTATCTAAGGTTTGGG+GGG - chr3_4:73648084-73648103 None:intergenic 40.0%
TAAGAAGCAGAACACATTCG+TGG + chr3_4:73648124-73648143 Msa0521040:three_prime_UTR 40.0%
AAGAAGCAGAACACATTCGT+GGG + chr3_4:73648125-73648144 Msa0521040:three_prime_UTR 40.0%
TTCGGTTAAGACAAGTGAGT+TGG + chr3_4:73648310-73648329 Msa0521040:three_prime_UTR 40.0%
! CAGTCTTATAGTTAGTCCCA+AGG + chr3_4:73648455-73648474 Msa0521040:three_prime_UTR 40.0%
CCCTGGCTTAAATGAAACAA+AGG + chr3_4:73648831-73648850 Msa0521040:three_prime_UTR 40.0%
TGATGAACCTTGAGGATTAG+AGG - chr3_4:73648935-73648954 None:intergenic 40.0%
CAATGTCTTGATGAACCTTG+AGG - chr3_4:73648943-73648962 None:intergenic 40.0%
TAGAGCAGTGTACCTTTACT+GGG + chr3_4:73649320-73649339 Msa0521040:three_prime_UTR 40.0%
AGTGTACCTTTACTGGGAAA+TGG + chr3_4:73649326-73649345 Msa0521040:three_prime_UTR 40.0%
TGGATGGATGCAGCATGTAT+CGG - chr3_4:73647032-73647051 None:intergenic 45.0%
GGTCCTAGGAAGAATAAACC+AGG + chr3_4:73647276-73647295 Msa0521040:CDS 45.0%
GTGCCTGGTTTATTCTTCCT+AGG - chr3_4:73647282-73647301 None:intergenic 45.0%
GTCTACCATTCAGGAGTTCA+AGG + chr3_4:73647372-73647391 Msa0521040:CDS 45.0%
GCACATGAGAATGACACAAC+GGG + chr3_4:73647508-73647527 Msa0521040:CDS 45.0%
GTAAACCCAGGACAGTTCTT+GGG - chr3_4:73647550-73647569 None:intergenic 45.0%
TGTAAACCCAGGACAGTTCT+TGG - chr3_4:73647551-73647570 None:intergenic 45.0%
CTGGAAAGTCTATTCCTCGA+TGG + chr3_4:73647725-73647744 Msa0521040:CDS 45.0%
!! GTGAATCGACTTGCAAGACT+TGG + chr3_4:73647748-73647767 Msa0521040:CDS 45.0%
ATCTACTATCTCCACCCCTA+AGG + chr3_4:73647904-73647923 Msa0521040:three_prime_UTR 45.0%
AGAAGCAGAACACATTCGTG+GGG + chr3_4:73648126-73648145 Msa0521040:three_prime_UTR 45.0%
CATGTAGGATGGAAGAGTTG+AGG - chr3_4:73648404-73648423 None:intergenic 45.0%
AGAGCTCTGCAGTCAAAATG+TGG + chr3_4:73648608-73648627 Msa0521040:three_prime_UTR 45.0%
AAATCAGAAGTCAGTCGAGC+AGG + chr3_4:73648899-73648918 Msa0521040:three_prime_UTR 45.0%
GATGCTTCCTCTAATCCTCA+AGG + chr3_4:73648925-73648944 Msa0521040:three_prime_UTR 45.0%
GTAGAGCAGTGTACCTTTAC+TGG + chr3_4:73649319-73649338 Msa0521040:three_prime_UTR 45.0%
!!! ATTTAAAGTTTTTAAATAAT+TGG - chr3_4:73647951-73647970 None:intergenic 5.0%
GAAGGTGGGTGAAGCAAAGT+AGG + chr3_4:73646984-73647003 Msa0521040:five_prime_UTR 50.0%
! CAGCATGTATCGGTATCCAC+CGG - chr3_4:73647022-73647041 None:intergenic 50.0%
AGATAAACAGGAACGGTGCC+TGG - chr3_4:73647297-73647316 None:intergenic 50.0%
!! GGTCTTGGTGTCTACCATTC+AGG + chr3_4:73647363-73647382 Msa0521040:CDS 50.0%
TGCAACCCAAGAACTGTCCT+GGG + chr3_4:73647542-73647561 Msa0521040:CDS 50.0%
CTTAAGATGGTCCTTAGGGG+TGG - chr3_4:73647918-73647937 None:intergenic 50.0%
GAAGCAGAACACATTCGTGG+GGG + chr3_4:73648127-73648146 Msa0521040:three_prime_UTR 50.0%
TTACTCTCTGTTGGGCCATG+AGG + chr3_4:73648260-73648279 Msa0521040:three_prime_UTR 50.0%
TACTCTCTGTTGGGCCATGA+GGG + chr3_4:73648261-73648280 Msa0521040:three_prime_UTR 50.0%
!! TGGTTCATAGTGTCGGCCTT+GGG - chr3_4:73648474-73648493 None:intergenic 50.0%
!! TTGGTTCATAGTGTCGGCCT+TGG - chr3_4:73648475-73648494 None:intergenic 50.0%
TCGGCAAGATACATCCGACA+AGG + chr3_4:73648855-73648874 Msa0521040:three_prime_UTR 50.0%
! CATGTATCGGTATCCACCGG+CGG - chr3_4:73647019-73647038 None:intergenic 55.0%
GTGCAACCCAAGAACTGTCC+TGG + chr3_4:73647541-73647560 Msa0521040:CDS 55.0%
! GCAAGTCGATTCACCCATCG+AGG - chr3_4:73647742-73647761 None:intergenic 55.0%
ACTCTCTGTTGGGCCATGAG+GGG + chr3_4:73648262-73648281 Msa0521040:three_prime_UTR 55.0%
AAGTAGGCACTTTCGGCCGC+CGG + chr3_4:73647000-73647019 Msa0521040:five_prime_UTR 60.0%
CAGAACACATTCGTGGGGGC+CGG + chr3_4:73648131-73648150 Msa0521040:three_prime_UTR 60.0%
AGAACACATTCGTGGGGGCC+GGG + chr3_4:73648132-73648151 Msa0521040:three_prime_UTR 60.0%
CTCTCTGTTGGGCCATGAGG+GGG + chr3_4:73648263-73648282 Msa0521040:three_prime_UTR 60.0%
TCCAATGAGGCTCCCCCTCA+TGG - chr3_4:73648278-73648297 None:intergenic 60.0%
GAGGGGGAGCCTCATTGGAT+TGG + chr3_4:73648279-73648298 Msa0521040:three_prime_UTR 60.0%
TGCAACTGCGTTCTTCCCCC+TGG + chr3_4:73648814-73648833 Msa0521040:three_prime_UTR 60.0%
GCCATGAGGGGGAGCCTCAT+TGG + chr3_4:73648274-73648293 Msa0521040:three_prime_UTR 65.0%
TAGGCACTTTCGGCCGCCGG+TGG + chr3_4:73647003-73647022 Msa0521040:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 73646908 73649379 73646908 ID=Msa0521040;Name=Msa0521040
chr3_4 mRNA 73646908 73649379 73646908 ID=Msa0521040-mRNA-1;Parent=Msa0521040;Name=Msa0521040-mRNA-1;_AED=0.00;_eAED=0.00;_QI=347|1|1|1|1|1|2|1602|144
chr3_4 exon 73646908 73647393 73646908 ID=Msa0521040-mRNA-1:exon:20682;Parent=Msa0521040-mRNA-1
chr3_4 exon 73647482 73649379 73647482 ID=Msa0521040-mRNA-1:exon:20683;Parent=Msa0521040-mRNA-1
chr3_4 five_prime_UTR 73646908 73647254 73646908 ID=Msa0521040-mRNA-1:five_prime_utr;Parent=Msa0521040-mRNA-1
chr3_4 CDS 73647255 73647393 73647255 ID=Msa0521040-mRNA-1:cds;Parent=Msa0521040-mRNA-1
chr3_4 CDS 73647482 73647777 73647482 ID=Msa0521040-mRNA-1:cds;Parent=Msa0521040-mRNA-1
chr3_4 three_prime_UTR 73647778 73649379 73647778 ID=Msa0521040-mRNA-1:three_prime_utr;Parent=Msa0521040-mRNA-1
Gene Sequence

>Msa0521040

ATGTTGTTTAAATTTGTAACAGGTCCTAGGAAGAATAAACCAGGCACCGTTCCTGTTTATCTTAATGTCTATGATCTCACACCCATTAACGGTTATGCTTATTGGCTTGGTCTTGGTGTCTACCATTCAGGAGTTCAAGTTCATGATGTTGAATATGGTTTTGGAGCACATGAGAATGACACAACGGGAATTTTTGAAGTGCAACCCAAGAACTGTCCTGGGTTTACATTCAGAAAATCGATTTTTATTGGTACAACGGATCTGGGTACAAAAGATATTCGAGTATTCATGGAGAAACTAGCTCAAGAGTACTCTGGAAATTCGTATCATCTTATTTCCAAAAATTGCAACCATTTTTGTGATGATGTTTGTTACAAATTAACTGGAAAGTCTATTCCTCGATGGGTGAATCGACTTGCAAGACTTGGTAAGTAA

Protein sequence

>Msa0521040

MLFKFVTGPRKNKPGTVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHDVEYGFGAHENDTTGIFEVQPKNCPGFTFRKSIFIGTTDLGTKDIRVFMEKLAQEYSGNSYHLISKNCNHFCDDVCYKLTGKSIPRWVNRLARLGK*