Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0521040 | XP_003603314.1 | 97.902 | 143 | 3 | 0 | 1 | 143 | 1 | 143 | 1.34e-100 | 297 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0521040 | sp|Q93VG8|PPDEX_ARATH | 57.576 | 132 | 56 | 0 | 13 | 144 | 22 | 153 | 1.88e-61 | 191 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0521040 | G7J9W5 | 97.902 | 143 | 3 | 0 | 1 | 143 | 1 | 143 | 6.41e-101 | 297 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0074140 | Msa0521040 | 0.803631 | 3.179852e-49 | -8.615850e-47 |
Msa0074180 | Msa0521040 | 0.806102 | 9.684028e-50 | -8.615850e-47 |
Msa0372290 | Msa0521040 | 0.815520 | 8.865139e-52 | -8.615850e-47 |
Msa0382340 | Msa0521040 | 0.903654 | 2.773979e-79 | -8.615850e-47 |
Msa0420530 | Msa0521040 | 0.804093 | 2.549073e-49 | -8.615850e-47 |
Msa0432190 | Msa0521040 | 0.924378 | 7.628081e-90 | -8.615850e-47 |
Msa0444170 | Msa0521040 | 0.802336 | 5.888769e-49 | -8.615850e-47 |
Msa0466780 | Msa0521040 | 0.812759 | 3.606622e-51 | -8.615850e-47 |
Msa0476710 | Msa0521040 | 0.925973 | 8.864844e-91 | -8.615850e-47 |
Msa0350070 | Msa0521040 | 0.806005 | 1.014987e-49 | -8.615850e-47 |
Msa0491730 | Msa0521040 | 0.810613 | 1.056596e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0521040 | MtrunA17_Chr3g0137121 | 97.902 | 143 | 3 | 0 | 1 | 143 | 1 | 143 | 1.23e-104 | 297 |
Msa0521040 | MtrunA17_Chr1g0149791 | 81.119 | 143 | 27 | 0 | 1 | 143 | 1 | 143 | 1.69e-89 | 259 |
Msa0521040 | MtrunA17_Chr1g0154681 | 70.769 | 130 | 38 | 0 | 14 | 143 | 39 | 168 | 1.37e-69 | 210 |
Msa0521040 | MtrunA17_Chr4g0002531 | 71.318 | 129 | 37 | 0 | 15 | 143 | 25 | 153 | 2.08e-67 | 204 |
Msa0521040 | MtrunA17_Chr1g0162711 | 65.909 | 132 | 45 | 0 | 12 | 143 | 36 | 167 | 3.58e-66 | 201 |
Msa0521040 | MtrunA17_Chr4g0055821 | 58.088 | 136 | 57 | 0 | 9 | 144 | 14 | 149 | 1.55e-61 | 188 |
Msa0521040 | MtrunA17_Chr5g0399541 | 61.905 | 126 | 48 | 0 | 19 | 144 | 25 | 150 | 6.97e-61 | 187 |
Msa0521040 | MtrunA17_Chr4g0063261 | 61.600 | 125 | 48 | 0 | 19 | 143 | 31 | 155 | 1.97e-56 | 176 |
Msa0521040 | MtrunA17_Chr2g0306871 | 57.851 | 121 | 51 | 0 | 24 | 144 | 33 | 153 | 1.29e-53 | 168 |
Msa0521040 | MtrunA17_Chr1g0202701 | 38.298 | 141 | 68 | 5 | 19 | 143 | 4 | 141 | 2.75e-23 | 90.9 |
Msa0521040 | MtrunA17_Chr6g0468771 | 40.000 | 110 | 63 | 3 | 36 | 143 | 34 | 142 | 1.39e-21 | 87.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0521040 | AT5G25170.1 | 80.435 | 138 | 26 | 1 | 6 | 143 | 8 | 144 | 3.14e-82 | 241 |
Msa0521040 | AT2G25190.1 | 75.373 | 134 | 33 | 0 | 10 | 143 | 10 | 143 | 1.47e-78 | 233 |
Msa0521040 | AT1G80690.2 | 70.504 | 139 | 37 | 1 | 10 | 144 | 4 | 142 | 5.26e-70 | 211 |
Msa0521040 | AT1G80690.1 | 70.290 | 138 | 37 | 1 | 10 | 143 | 4 | 141 | 2.50e-69 | 209 |
Msa0521040 | AT1G47740.1 | 70.769 | 130 | 38 | 0 | 14 | 143 | 66 | 195 | 4.14e-69 | 210 |
Msa0521040 | AT1G47740.2 | 70.769 | 130 | 38 | 0 | 14 | 143 | 66 | 195 | 4.14e-69 | 210 |
Msa0521040 | AT1G47740.3 | 70.769 | 130 | 38 | 0 | 14 | 143 | 66 | 195 | 4.14e-69 | 210 |
Msa0521040 | AT4G31980.1 | 67.133 | 143 | 47 | 0 | 1 | 143 | 1 | 143 | 4.44e-68 | 218 |
Msa0521040 | AT4G17486.1 | 57.576 | 132 | 56 | 0 | 13 | 144 | 22 | 153 | 1.91e-62 | 191 |
Msa0521040 | AT5G47310.1 | 59.375 | 128 | 52 | 0 | 17 | 144 | 28 | 155 | 6.84e-62 | 190 |
Msa0521040 | AT4G17486.2 | 57.692 | 130 | 55 | 0 | 13 | 142 | 22 | 151 | 7.46e-62 | 189 |
Msa0521040 | AT5G25170.2 | 76.768 | 99 | 23 | 0 | 45 | 143 | 2 | 100 | 1.25e-54 | 169 |
Msa0521040 | AT4G25660.1 | 39.623 | 106 | 62 | 2 | 39 | 143 | 38 | 142 | 1.27e-20 | 84.7 |
Msa0521040 | AT4G25680.1 | 39.623 | 106 | 62 | 2 | 39 | 143 | 38 | 142 | 2.72e-20 | 84.0 |
Msa0521040 | AT3G07090.2 | 31.783 | 129 | 72 | 3 | 19 | 139 | 8 | 128 | 1.46e-12 | 63.5 |
Msa0521040 | AT3G07090.1 | 31.783 | 129 | 72 | 3 | 19 | 139 | 8 | 128 | 1.46e-12 | 63.5 |
Find 128 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACTTCGTGCTTTAAGATTT+TGG | 0.032210 | 3_4:-73648348 | None:intergenic |
CCATTAACGGTTATGCTTAT+TGG | 0.129676 | 3_4:+73647337 | Msa0521040:CDS |
TTTCTTTGTTTCTCCATTCT+TGG | 0.134095 | 3_4:+73649231 | Msa0521040:three_prime_UTR |
ATCTTAAAGCACGAAGTTTA+TGG | 0.169552 | 3_4:+73648353 | Msa0521040:three_prime_UTR |
CCAATAAGCATAACCGTTAA+TGG | 0.223848 | 3_4:-73647337 | None:intergenic |
AATTGCTGTATTTGTGTCTT+TGG | 0.240461 | 3_4:+73647869 | Msa0521040:three_prime_UTR |
GGTCTTGGTGTCTACCATTC+AGG | 0.255831 | 3_4:+73647363 | Msa0521040:CDS |
CACATTCATTAGTCTATCTA+AGG | 0.259391 | 3_4:-73648090 | None:intergenic |
CATTAGTCTATCTAAGGTTT+GGG | 0.279007 | 3_4:-73648084 | None:intergenic |
GATGTTTGTTACAAATTAAC+TGG | 0.283670 | 3_4:+73647706 | Msa0521040:CDS |
GCAGTTCATGATGTTGAATA+TGG | 0.287319 | 3_4:+73647478 | Msa0521040:intron |
CATGATGTTGAATATGGTTT+TGG | 0.298326 | 3_4:+73647484 | Msa0521040:CDS |
TAAGCAACATAAGATGATTC+AGG | 0.309185 | 3_4:+73649066 | Msa0521040:three_prime_UTR |
GTAGAGCAGTGTACCTTTAC+TGG | 0.318469 | 3_4:+73649319 | Msa0521040:three_prime_UTR |
GTAGTATTTGTGGTCAATTA+AGG | 0.319018 | 3_4:-73647107 | None:intergenic |
ATTACAAAAGTGAAGAAAAT+TGG | 0.319499 | 3_4:-73647978 | None:intergenic |
TAGAATTGCAATAGCTACTA+TGG | 0.320408 | 3_4:+73649140 | Msa0521040:three_prime_UTR |
TAAACCTTCAAATATAATTA+AGG | 0.323261 | 3_4:-73648788 | None:intergenic |
TCATTAGTCTATCTAAGGTT+TGG | 0.332284 | 3_4:-73648085 | None:intergenic |
ATGTTGTTTAAATTTGTAAC+AGG | 0.349757 | 3_4:+73647255 | Msa0521040:CDS |
ATATTATGAGTTGATGAAAA+TGG | 0.355546 | 3_4:+73649360 | Msa0521040:three_prime_UTR |
GTGAGTAAAGATTACTCTCT+TGG | 0.364391 | 3_4:+73648190 | Msa0521040:three_prime_UTR |
AACGGTTATGCTTATTGGCT+TGG | 0.365043 | 3_4:+73647342 | Msa0521040:CDS |
TTCTCCTTAATTATATTTGA+AGG | 0.366946 | 3_4:+73648784 | Msa0521040:three_prime_UTR |
TGTAAACCCAGGACAGTTCT+TGG | 0.374934 | 3_4:-73647548 | None:intergenic |
TGATGAACCTTGAGGATTAG+AGG | 0.385937 | 3_4:-73648932 | None:intergenic |
TGAAGCAAAGTAGGCACTTT+CGG | 0.387010 | 3_4:+73646993 | Msa0521040:five_prime_UTR |
TGAGTAAAGATTACTCTCTT+GGG | 0.392173 | 3_4:+73648191 | Msa0521040:three_prime_UTR |
GAATTCTTAAGATGGTCCTT+AGG | 0.393767 | 3_4:-73647920 | None:intergenic |
TATGCTTATTGGCTTGGTCT+TGG | 0.396983 | 3_4:+73647348 | Msa0521040:CDS |
TTGGTTCATAGTGTCGGCCT+TGG | 0.398271 | 3_4:-73648472 | None:intergenic |
GGTGGAGATAGTAGATTTCA+TGG | 0.399069 | 3_4:-73647897 | None:intergenic |
GAGCTAATATTACTCTCTGT+TGG | 0.402321 | 3_4:+73648251 | Msa0521040:three_prime_UTR |
AATTCTTAAGATGGTCCTTA+GGG | 0.403949 | 3_4:-73647919 | None:intergenic |
AAAAGATATTCGAGTATTCA+TGG | 0.405447 | 3_4:+73647612 | Msa0521040:CDS |
GTGTGTGAAATGAAATTAGA+AGG | 0.410923 | 3_4:-73647178 | None:intergenic |
AAGGAGAAATTGAATTATGA+AGG | 0.411151 | 3_4:-73647159 | None:intergenic |
ACTAATGAATGTGGCTTAGT+TGG | 0.411811 | 3_4:+73648100 | Msa0521040:three_prime_UTR |
TCATAGACATTAAGATAAAC+AGG | 0.419830 | 3_4:-73647306 | None:intergenic |
TGGTTCATAGTGTCGGCCTT+GGG | 0.426986 | 3_4:-73648471 | None:intergenic |
TTCAAGCATGTGTTTGTTGA+GGG | 0.429493 | 3_4:-73648639 | None:intergenic |
ATTGGATTGGATCATCAATT+CGG | 0.432407 | 3_4:+73648292 | Msa0521040:three_prime_UTR |
CTACGTCTATTTCTAAATAT+AGG | 0.436459 | 3_4:-73648016 | None:intergenic |
TATGATCTCACACCCATTAA+CGG | 0.439304 | 3_4:+73647324 | Msa0521040:CDS |
ACCTTTGTTTCATTTAAGCC+AGG | 0.453538 | 3_4:-73648832 | None:intergenic |
CAATAAGCATAACCGTTAAT+GGG | 0.454345 | 3_4:-73647336 | None:intergenic |
AGCTAATATTACTCTCTGTT+GGG | 0.455868 | 3_4:+73648252 | Msa0521040:three_prime_UTR |
TAATATTAGCTCATGTGCTT+AGG | 0.457062 | 3_4:-73648240 | None:intergenic |
TTAAATTTGTAACAGGTCCT+AGG | 0.459653 | 3_4:+73647262 | Msa0521040:CDS |
AGATAAACAGGAACGGTGCC+TGG | 0.463481 | 3_4:-73647294 | None:intergenic |
GTGCAACCCAAGAACTGTCC+TGG | 0.468233 | 3_4:+73647541 | Msa0521040:CDS |
GTATTTCCATTTCCCAGTAA+AGG | 0.468868 | 3_4:-73649332 | None:intergenic |
TACTCTCTGTTGGGCCATGA+GGG | 0.470256 | 3_4:+73648261 | Msa0521040:three_prime_UTR |
AGTTGTTTCACTTGTTTACA+AGG | 0.473534 | 3_4:-73648729 | None:intergenic |
AGTGTACCTTTACTGGGAAA+TGG | 0.474787 | 3_4:+73649326 | Msa0521040:three_prime_UTR |
GTAAACCCAGGACAGTTCTT+GGG | 0.475359 | 3_4:-73647547 | None:intergenic |
TAATCTTTACTCACATGCTT+AGG | 0.481361 | 3_4:-73648181 | None:intergenic |
TTTATTGGTACAACGGATCT+GGG | 0.492318 | 3_4:+73647586 | Msa0521040:CDS |
GTGCCTGGTTTATTCTTCCT+AGG | 0.495057 | 3_4:-73647279 | None:intergenic |
TGGACAAAGAATTCTTAAGA+TGG | 0.496798 | 3_4:-73647928 | None:intergenic |
TTCGGTTAAGACAAGTGAGT+TGG | 0.501060 | 3_4:+73648310 | Msa0521040:three_prime_UTR |
AAATCAGAAGTCAGTCGAGC+AGG | 0.509704 | 3_4:+73648899 | Msa0521040:three_prime_UTR |
GCACATGAGAATGACACAAC+GGG | 0.512307 | 3_4:+73647508 | Msa0521040:CDS |
TTACTTTACTGTTAATGTTG+TGG | 0.518105 | 3_4:-73648998 | None:intergenic |
AAGTAGGCACTTTCGGCCGC+CGG | 0.520024 | 3_4:+73647000 | Msa0521040:five_prime_UTR |
CTCTCTGTTGGGCCATGAGG+GGG | 0.521409 | 3_4:+73648263 | Msa0521040:three_prime_UTR |
ATAGTATATGTGACTGTGGA+TGG | 0.524162 | 3_4:-73647045 | None:intergenic |
TGTTACCTTGAACTCCTGAA+TGG | 0.525614 | 3_4:-73647377 | None:intergenic |
GCTTAAATGAAACAAAGGTT+CGG | 0.527769 | 3_4:+73648836 | Msa0521040:three_prime_UTR |
GTCTACCATTCAGGAGTTCA+AGG | 0.527892 | 3_4:+73647372 | Msa0521040:CDS |
GAAGGTGGGTGAAGCAAAGT+AGG | 0.527980 | 3_4:+73646984 | Msa0521040:five_prime_UTR |
GTGAATCGACTTGCAAGACT+TGG | 0.529761 | 3_4:+73647748 | Msa0521040:CDS |
ATTCAAGCATGTGTTTGTTG+AGG | 0.530309 | 3_4:-73648640 | None:intergenic |
AAAGAAAAGGAGTGGAAGGT+GGG | 0.540527 | 3_4:+73646970 | Msa0521040:five_prime_UTR |
AAAAGAAAAGGAGTGGAAGG+TGG | 0.542628 | 3_4:+73646969 | Msa0521040:five_prime_UTR |
CTGGAAAGTCTATTCCTCGA+TGG | 0.545239 | 3_4:+73647725 | Msa0521040:CDS |
AAACTAGCTCAAGAGTACTC+TGG | 0.546204 | 3_4:+73647637 | Msa0521040:CDS |
AAGCAACATAAGATGATTCA+GGG | 0.554705 | 3_4:+73649067 | Msa0521040:three_prime_UTR |
ACTCTCTGTTGGGCCATGAG+GGG | 0.556912 | 3_4:+73648262 | Msa0521040:three_prime_UTR |
TTACTCTCTGTTGGGCCATG+AGG | 0.562674 | 3_4:+73648260 | Msa0521040:three_prime_UTR |
AGGAGAAATTGAATTATGAA+GGG | 0.566240 | 3_4:-73647158 | None:intergenic |
TGGAAAGTCTATTCCTCGAT+GGG | 0.567577 | 3_4:+73647726 | Msa0521040:CDS |
ATTAGTCTATCTAAGGTTTG+GGG | 0.569126 | 3_4:-73648083 | None:intergenic |
TGCAACCCAAGAACTGTCCT+GGG | 0.570444 | 3_4:+73647542 | Msa0521040:CDS |
TTGCAATAGCTACTATGGAA+TGG | 0.572548 | 3_4:+73649145 | Msa0521040:three_prime_UTR |
CCCTGGCTTAAATGAAACAA+AGG | 0.575438 | 3_4:+73648831 | Msa0521040:three_prime_UTR |
AGTTAAAGTCTCATGTAGGA+TGG | 0.575494 | 3_4:-73648412 | None:intergenic |
CCTTTGTTTCATTTAAGCCA+GGG | 0.576422 | 3_4:-73648831 | None:intergenic |
GCACTCCATAGAGTAAAGAC+AGG | 0.578640 | 3_4:+73646896 | None:intergenic |
TAAAGTTCTTTGTCACTACC+CGG | 0.578729 | 3_4:-73648150 | None:intergenic |
CACGAGAGGAACAATTATCA+TGG | 0.579884 | 3_4:+73646921 | Msa0521040:five_prime_UTR |
ATCTACTATCTCCACCCCTA+AGG | 0.581500 | 3_4:+73647904 | Msa0521040:three_prime_UTR |
TAGGCACTTTCGGCCGCCGG+TGG | 0.583249 | 3_4:+73647003 | Msa0521040:five_prime_UTR |
GATGCTTCCTCTAATCCTCA+AGG | 0.583321 | 3_4:+73648925 | Msa0521040:three_prime_UTR |
GTATTTGTGGTCAATTAAGG+AGG | 0.583459 | 3_4:-73647104 | None:intergenic |
TAAGAAGCAGAACACATTCG+TGG | 0.583815 | 3_4:+73648124 | Msa0521040:three_prime_UTR |
ATTTCTAAATATAGGAACCC+TGG | 0.588924 | 3_4:-73648008 | None:intergenic |
CTTAAGATGGTCCTTAGGGG+TGG | 0.589054 | 3_4:-73647915 | None:intergenic |
AAGAAGCAGAACACATTCGT+GGG | 0.591034 | 3_4:+73648125 | Msa0521040:three_prime_UTR |
CAATGTCTTGATGAACCTTG+AGG | 0.603172 | 3_4:-73648940 | None:intergenic |
TAGAGCAGTGTACCTTTACT+GGG | 0.604888 | 3_4:+73649320 | Msa0521040:three_prime_UTR |
CTTTGTTTCATTTAAGCCAG+GGG | 0.610009 | 3_4:-73648830 | None:intergenic |
TTAGTCTATCTAAGGTTTGG+GGG | 0.611048 | 3_4:-73648082 | None:intergenic |
GAGTAAAGATTACTCTCTTG+GGG | 0.612515 | 3_4:+73648192 | Msa0521040:three_prime_UTR |
TAGTCTATCTAAGGTTTGGG+GGG | 0.617053 | 3_4:-73648081 | None:intergenic |
TGTGAGTTAAAGTCTCATGT+AGG | 0.621539 | 3_4:-73648416 | None:intergenic |
TGTTAACTAGGTTGTGCTGA+AGG | 0.625185 | 3_4:-73647210 | None:intergenic |
CTTAGATAGACTAATGAATG+TGG | 0.625748 | 3_4:+73648091 | Msa0521040:three_prime_UTR |
AGAGCTCTGCAGTCAAAATG+TGG | 0.628483 | 3_4:+73648608 | Msa0521040:three_prime_UTR |
GACATTAAGATAAACAGGAA+CGG | 0.631998 | 3_4:-73647301 | None:intergenic |
GGAAATAGTATATGTGACTG+TGG | 0.642092 | 3_4:-73647049 | None:intergenic |
CAGCATGTATCGGTATCCAC+CGG | 0.647500 | 3_4:-73647019 | None:intergenic |
AGTAAAGACAGGGACACGAG+AGG | 0.649534 | 3_4:+73646907 | None:intergenic |
CAGTCTTATAGTTAGTCCCA+AGG | 0.652208 | 3_4:+73648455 | Msa0521040:three_prime_UTR |
TGGATGGATGCAGCATGTAT+CGG | 0.658330 | 3_4:-73647029 | None:intergenic |
ATTCTTAAGATGGTCCTTAG+GGG | 0.659117 | 3_4:-73647918 | None:intergenic |
AGAAGCAGAACACATTCGTG+GGG | 0.666169 | 3_4:+73648126 | Msa0521040:three_prime_UTR |
CATGTAGGATGGAAGAGTTG+AGG | 0.678031 | 3_4:-73648401 | None:intergenic |
CACTCCATAGAGTAAAGACA+GGG | 0.678596 | 3_4:+73646897 | None:intergenic |
AGCACATGAGAATGACACAA+CGG | 0.687804 | 3_4:+73647507 | Msa0521040:CDS |
ATTGATGATCCAATCCAATG+AGG | 0.688674 | 3_4:-73648288 | None:intergenic |
CATGTATCGGTATCCACCGG+CGG | 0.689603 | 3_4:-73647016 | None:intergenic |
GCAAGTCGATTCACCCATCG+AGG | 0.697146 | 3_4:-73647739 | None:intergenic |
GGTCCTAGGAAGAATAAACC+AGG | 0.698084 | 3_4:+73647276 | Msa0521040:CDS |
TTTGTTTCATTTAAGCCAGG+GGG | 0.701964 | 3_4:-73648829 | None:intergenic |
TCGGCAAGATACATCCGACA+AGG | 0.712843 | 3_4:+73648855 | Msa0521040:three_prime_UTR |
GAAGCAGAACACATTCGTGG+GGG | 0.722910 | 3_4:+73648127 | Msa0521040:three_prime_UTR |
GCTTTGATTAAAGATGATCG+AGG | 0.732245 | 3_4:-73648967 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CAATAAAAAATAAAAAGAAA+AGG | + | chr3_4:73646957-73646976 | Msa0521040:five_prime_UTR | 10.0% |
!! | TATTTAAAAACTTTAAATGT+TGG | + | chr3_4:73647953-73647972 | Msa0521040:three_prime_UTR | 10.0% |
!!! | TAAATATTTTGATGTTAACT+AGG | - | chr3_4:73647225-73647244 | None:intergenic | 15.0% |
!! | TAAACCTTCAAATATAATTA+AGG | - | chr3_4:73648791-73648810 | None:intergenic | 15.0% |
!! | AAAAATAAAAAGAAAAGGAG+TGG | + | chr3_4:73646962-73646981 | Msa0521040:five_prime_UTR | 20.0% |
!! | TGAAAAAATTGTAGTATTTG+TGG | - | chr3_4:73647120-73647139 | None:intergenic | 20.0% |
!!! | ATGTTGTTTAAATTTGTAAC+AGG | + | chr3_4:73647255-73647274 | Msa0521040:CDS | 20.0% |
!!! | AATCTACATACATTAGTTTA+AGG | - | chr3_4:73647422-73647441 | None:intergenic | 20.0% |
!!! | TTCAGAAAATCGATTTTTAT+TGG | + | chr3_4:73647571-73647590 | Msa0521040:CDS | 20.0% |
!! | ATTACAAAAGTGAAGAAAAT+TGG | - | chr3_4:73647981-73648000 | None:intergenic | 20.0% |
!! | TTCTCCTTAATTATATTTGA+AGG | + | chr3_4:73648784-73648803 | Msa0521040:three_prime_UTR | 20.0% |
! | CCAAGAAAAAGAATAATAGT+GGG | - | chr3_4:73647073-73647092 | None:intergenic | 25.0% |
! | AGGAGAAATTGAATTATGAA+GGG | - | chr3_4:73647161-73647180 | None:intergenic | 25.0% |
! | AAGGAGAAATTGAATTATGA+AGG | - | chr3_4:73647162-73647181 | None:intergenic | 25.0% |
! | TCATAGACATTAAGATAAAC+AGG | - | chr3_4:73647309-73647328 | None:intergenic | 25.0% |
!! | GTTTAAGGTTAATTAAAAGC+AGG | - | chr3_4:73647407-73647426 | None:intergenic | 25.0% |
!!! | ATCGATTTTTATTGGTACAA+CGG | + | chr3_4:73647579-73647598 | Msa0521040:CDS | 25.0% |
! | AAAAGATATTCGAGTATTCA+TGG | + | chr3_4:73647612-73647631 | Msa0521040:CDS | 25.0% |
!! | ACAAAAATGGTTGCAATTTT+TGG | - | chr3_4:73647683-73647702 | None:intergenic | 25.0% |
! | AACAAACATCATCACAAAAA+TGG | - | chr3_4:73647696-73647715 | None:intergenic | 25.0% |
!! | GATGTTTGTTACAAATTAAC+TGG | + | chr3_4:73647706-73647725 | Msa0521040:CDS | 25.0% |
!!! | CTACGTCTATTTCTAAATAT+AGG | - | chr3_4:73648019-73648038 | None:intergenic | 25.0% |
!!! | ATGTACTTGTTTTATGTGAT+TGG | + | chr3_4:73648686-73648705 | Msa0521040:three_prime_UTR | 25.0% |
! | TTACTTTACTGTTAATGTTG+TGG | - | chr3_4:73649001-73649020 | None:intergenic | 25.0% |
!!! | AAACTCAAACACTATTTTAG+AGG | - | chr3_4:73649042-73649061 | None:intergenic | 25.0% |
!! | TGCTTTCTTTCTTTTATGAA+TGG | + | chr3_4:73649204-73649223 | Msa0521040:three_prime_UTR | 25.0% |
!! | GCTTTCTTTCTTTTATGAAT+GGG | + | chr3_4:73649205-73649224 | Msa0521040:three_prime_UTR | 25.0% |
ATAAAAAGAAAAGGAGTGGA+AGG | + | chr3_4:73646966-73646985 | Msa0521040:five_prime_UTR | 30.0% | |
! | CCCACTATTATTCTTTTTCT+TGG | + | chr3_4:73647070-73647089 | Msa0521040:five_prime_UTR | 30.0% |
GCCAAGAAAAAGAATAATAG+TGG | - | chr3_4:73647074-73647093 | None:intergenic | 30.0% | |
GTAGTATTTGTGGTCAATTA+AGG | - | chr3_4:73647110-73647129 | None:intergenic | 30.0% | |
GTGTGTGAAATGAAATTAGA+AGG | - | chr3_4:73647181-73647200 | None:intergenic | 30.0% | |
TTAAATTTGTAACAGGTCCT+AGG | + | chr3_4:73647262-73647281 | Msa0521040:CDS | 30.0% | |
GACATTAAGATAAACAGGAA+CGG | - | chr3_4:73647304-73647323 | None:intergenic | 30.0% | |
CAATAAGCATAACCGTTAAT+GGG | - | chr3_4:73647339-73647358 | None:intergenic | 30.0% | |
! | CATGATGTTGAATATGGTTT+TGG | + | chr3_4:73647484-73647503 | Msa0521040:CDS | 30.0% |
AATTGCTGTATTTGTGTCTT+TGG | + | chr3_4:73647869-73647888 | Msa0521040:three_prime_UTR | 30.0% | |
AATTCTTAAGATGGTCCTTA+GGG | - | chr3_4:73647922-73647941 | None:intergenic | 30.0% | |
TGGACAAAGAATTCTTAAGA+TGG | - | chr3_4:73647931-73647950 | None:intergenic | 30.0% | |
! | ACTTTTGTAATTTAGAGACC+AGG | + | chr3_4:73647990-73648009 | Msa0521040:three_prime_UTR | 30.0% |
! | CTTTTGTAATTTAGAGACCA+GGG | + | chr3_4:73647991-73648010 | Msa0521040:three_prime_UTR | 30.0% |
ATTTCTAAATATAGGAACCC+TGG | - | chr3_4:73648011-73648030 | None:intergenic | 30.0% | |
! | ATTAGTCTATCTAAGGTTTG+GGG | - | chr3_4:73648086-73648105 | None:intergenic | 30.0% |
! | CATTAGTCTATCTAAGGTTT+GGG | - | chr3_4:73648087-73648106 | None:intergenic | 30.0% |
! | TCATTAGTCTATCTAAGGTT+TGG | - | chr3_4:73648088-73648107 | None:intergenic | 30.0% |
! | CACATTCATTAGTCTATCTA+AGG | - | chr3_4:73648093-73648112 | None:intergenic | 30.0% |
CTTAGATAGACTAATGAATG+TGG | + | chr3_4:73648091-73648110 | Msa0521040:three_prime_UTR | 30.0% | |
TAATCTTTACTCACATGCTT+AGG | - | chr3_4:73648184-73648203 | None:intergenic | 30.0% | |
TGAGTAAAGATTACTCTCTT+GGG | + | chr3_4:73648191-73648210 | Msa0521040:three_prime_UTR | 30.0% | |
TAATATTAGCTCATGTGCTT+AGG | - | chr3_4:73648243-73648262 | None:intergenic | 30.0% | |
AGCTAATATTACTCTCTGTT+GGG | + | chr3_4:73648252-73648271 | Msa0521040:three_prime_UTR | 30.0% | |
! | ATTGGATTGGATCATCAATT+CGG | + | chr3_4:73648292-73648311 | Msa0521040:three_prime_UTR | 30.0% |
!! | TAAGATTTTGGGTGAATATG+TGG | - | chr3_4:73648339-73648358 | None:intergenic | 30.0% |
!!! | ACTTCGTGCTTTAAGATTTT+GGG | - | chr3_4:73648350-73648369 | None:intergenic | 30.0% |
!!! | AACTTCGTGCTTTAAGATTT+TGG | - | chr3_4:73648351-73648370 | None:intergenic | 30.0% |
ATCTTAAAGCACGAAGTTTA+TGG | + | chr3_4:73648353-73648372 | Msa0521040:three_prime_UTR | 30.0% | |
!!! | TCTTTTTTGGTTCATAGTGT+CGG | - | chr3_4:73648481-73648500 | None:intergenic | 30.0% |
! | AGTTGTTTCACTTGTTTACA+AGG | - | chr3_4:73648732-73648751 | None:intergenic | 30.0% |
GCTTAAATGAAACAAAGGTT+CGG | + | chr3_4:73648836-73648855 | Msa0521040:three_prime_UTR | 30.0% | |
! | TTCTTTTTCTTCAACCTTGT+CGG | - | chr3_4:73648872-73648891 | None:intergenic | 30.0% |
AGGTTGAAGAAAAAGAAAAG+AGG | + | chr3_4:73648875-73648894 | Msa0521040:three_prime_UTR | 30.0% | |
TAAGCAACATAAGATGATTC+AGG | + | chr3_4:73649066-73649085 | Msa0521040:three_prime_UTR | 30.0% | |
AAGCAACATAAGATGATTCA+GGG | + | chr3_4:73649067-73649086 | Msa0521040:three_prime_UTR | 30.0% | |
TAGAATTGCAATAGCTACTA+TGG | + | chr3_4:73649140-73649159 | Msa0521040:three_prime_UTR | 30.0% | |
! | TTTCTTTGTTTCTCCATTCT+TGG | + | chr3_4:73649231-73649250 | Msa0521040:three_prime_UTR | 30.0% |
TGAAAAATACAGTCCAAGAA+TGG | - | chr3_4:73649247-73649266 | None:intergenic | 30.0% | |
! | TTGGACTGTATTTTTCATTC+TGG | + | chr3_4:73649250-73649269 | Msa0521040:three_prime_UTR | 30.0% |
ATAGTATATGTGACTGTGGA+TGG | - | chr3_4:73647048-73647067 | None:intergenic | 35.0% | |
GGAAATAGTATATGTGACTG+TGG | - | chr3_4:73647052-73647071 | None:intergenic | 35.0% | |
GTATTTGTGGTCAATTAAGG+AGG | - | chr3_4:73647107-73647126 | None:intergenic | 35.0% | |
TATGATCTCACACCCATTAA+CGG | + | chr3_4:73647324-73647343 | Msa0521040:CDS | 35.0% | |
CCAATAAGCATAACCGTTAA+TGG | - | chr3_4:73647340-73647359 | None:intergenic | 35.0% | |
CCATTAACGGTTATGCTTAT+TGG | + | chr3_4:73647337-73647356 | Msa0521040:CDS | 35.0% | |
GCAGTTCATGATGTTGAATA+TGG | + | chr3_4:73647478-73647497 | Msa0521040:intron | 35.0% | |
! | GATTTTCTGAATGTAAACCC+AGG | - | chr3_4:73647562-73647581 | None:intergenic | 35.0% |
! | TTTTATTGGTACAACGGATC+TGG | + | chr3_4:73647585-73647604 | Msa0521040:CDS | 35.0% |
TTTATTGGTACAACGGATCT+GGG | + | chr3_4:73647586-73647605 | Msa0521040:CDS | 35.0% | |
ATTCTTAAGATGGTCCTTAG+GGG | - | chr3_4:73647921-73647940 | None:intergenic | 35.0% | |
GAATTCTTAAGATGGTCCTT+AGG | - | chr3_4:73647923-73647942 | None:intergenic | 35.0% | |
! | TTAGTCTATCTAAGGTTTGG+GGG | - | chr3_4:73648085-73648104 | None:intergenic | 35.0% |
ACTAATGAATGTGGCTTAGT+TGG | + | chr3_4:73648100-73648119 | Msa0521040:three_prime_UTR | 35.0% | |
TAAAGTTCTTTGTCACTACC+CGG | - | chr3_4:73648153-73648172 | None:intergenic | 35.0% | |
GTGAGTAAAGATTACTCTCT+TGG | + | chr3_4:73648190-73648209 | Msa0521040:three_prime_UTR | 35.0% | |
GAGTAAAGATTACTCTCTTG+GGG | + | chr3_4:73648192-73648211 | Msa0521040:three_prime_UTR | 35.0% | |
GAGCTAATATTACTCTCTGT+TGG | + | chr3_4:73648251-73648270 | Msa0521040:three_prime_UTR | 35.0% | |
! | ATTGATGATCCAATCCAATG+AGG | - | chr3_4:73648291-73648310 | None:intergenic | 35.0% |
AGTTAAAGTCTCATGTAGGA+TGG | - | chr3_4:73648415-73648434 | None:intergenic | 35.0% | |
TGTGAGTTAAAGTCTCATGT+AGG | - | chr3_4:73648419-73648438 | None:intergenic | 35.0% | |
!!! | GCACAAAAGTCTGTCTTTTT+TGG | - | chr3_4:73648494-73648513 | None:intergenic | 35.0% |
! | TTCAAGCATGTGTTTGTTGA+GGG | - | chr3_4:73648642-73648661 | None:intergenic | 35.0% |
! | ATTCAAGCATGTGTTTGTTG+AGG | - | chr3_4:73648643-73648662 | None:intergenic | 35.0% |
TTTGTTTCATTTAAGCCAGG+GGG | - | chr3_4:73648832-73648851 | None:intergenic | 35.0% | |
! | CTTTGTTTCATTTAAGCCAG+GGG | - | chr3_4:73648833-73648852 | None:intergenic | 35.0% |
! | CCTTTGTTTCATTTAAGCCA+GGG | - | chr3_4:73648834-73648853 | None:intergenic | 35.0% |
! | ACCTTTGTTTCATTTAAGCC+AGG | - | chr3_4:73648835-73648854 | None:intergenic | 35.0% |
GCTTTGATTAAAGATGATCG+AGG | - | chr3_4:73648970-73648989 | None:intergenic | 35.0% | |
TTGCAATAGCTACTATGGAA+TGG | + | chr3_4:73649145-73649164 | Msa0521040:three_prime_UTR | 35.0% | |
GTATTTCCATTTCCCAGTAA+AGG | - | chr3_4:73649335-73649354 | None:intergenic | 35.0% | |
CACGAGAGGAACAATTATCA+TGG | + | chr3_4:73646921-73646940 | Msa0521040:five_prime_UTR | 40.0% | |
AAAAGAAAAGGAGTGGAAGG+TGG | + | chr3_4:73646969-73646988 | Msa0521040:five_prime_UTR | 40.0% | |
AAAGAAAAGGAGTGGAAGGT+GGG | + | chr3_4:73646970-73646989 | Msa0521040:five_prime_UTR | 40.0% | |
TGAAGCAAAGTAGGCACTTT+CGG | + | chr3_4:73646993-73647012 | Msa0521040:five_prime_UTR | 40.0% | |
TGTTAACTAGGTTGTGCTGA+AGG | - | chr3_4:73647213-73647232 | None:intergenic | 40.0% | |
! | AACGGTTATGCTTATTGGCT+TGG | + | chr3_4:73647342-73647361 | Msa0521040:CDS | 40.0% |
!! | TATGCTTATTGGCTTGGTCT+TGG | + | chr3_4:73647348-73647367 | Msa0521040:CDS | 40.0% |
TGTTACCTTGAACTCCTGAA+TGG | - | chr3_4:73647380-73647399 | None:intergenic | 40.0% | |
AGCACATGAGAATGACACAA+CGG | + | chr3_4:73647507-73647526 | Msa0521040:CDS | 40.0% | |
!! | AAACTAGCTCAAGAGTACTC+TGG | + | chr3_4:73647637-73647656 | Msa0521040:CDS | 40.0% |
TGGAAAGTCTATTCCTCGAT+GGG | + | chr3_4:73647726-73647745 | Msa0521040:CDS | 40.0% | |
GGTGGAGATAGTAGATTTCA+TGG | - | chr3_4:73647900-73647919 | None:intergenic | 40.0% | |
! | TAGTCTATCTAAGGTTTGGG+GGG | - | chr3_4:73648084-73648103 | None:intergenic | 40.0% |
TAAGAAGCAGAACACATTCG+TGG | + | chr3_4:73648124-73648143 | Msa0521040:three_prime_UTR | 40.0% | |
AAGAAGCAGAACACATTCGT+GGG | + | chr3_4:73648125-73648144 | Msa0521040:three_prime_UTR | 40.0% | |
TTCGGTTAAGACAAGTGAGT+TGG | + | chr3_4:73648310-73648329 | Msa0521040:three_prime_UTR | 40.0% | |
! | CAGTCTTATAGTTAGTCCCA+AGG | + | chr3_4:73648455-73648474 | Msa0521040:three_prime_UTR | 40.0% |
CCCTGGCTTAAATGAAACAA+AGG | + | chr3_4:73648831-73648850 | Msa0521040:three_prime_UTR | 40.0% | |
TGATGAACCTTGAGGATTAG+AGG | - | chr3_4:73648935-73648954 | None:intergenic | 40.0% | |
CAATGTCTTGATGAACCTTG+AGG | - | chr3_4:73648943-73648962 | None:intergenic | 40.0% | |
TAGAGCAGTGTACCTTTACT+GGG | + | chr3_4:73649320-73649339 | Msa0521040:three_prime_UTR | 40.0% | |
AGTGTACCTTTACTGGGAAA+TGG | + | chr3_4:73649326-73649345 | Msa0521040:three_prime_UTR | 40.0% | |
TGGATGGATGCAGCATGTAT+CGG | - | chr3_4:73647032-73647051 | None:intergenic | 45.0% | |
GGTCCTAGGAAGAATAAACC+AGG | + | chr3_4:73647276-73647295 | Msa0521040:CDS | 45.0% | |
GTGCCTGGTTTATTCTTCCT+AGG | - | chr3_4:73647282-73647301 | None:intergenic | 45.0% | |
GTCTACCATTCAGGAGTTCA+AGG | + | chr3_4:73647372-73647391 | Msa0521040:CDS | 45.0% | |
GCACATGAGAATGACACAAC+GGG | + | chr3_4:73647508-73647527 | Msa0521040:CDS | 45.0% | |
GTAAACCCAGGACAGTTCTT+GGG | - | chr3_4:73647550-73647569 | None:intergenic | 45.0% | |
TGTAAACCCAGGACAGTTCT+TGG | - | chr3_4:73647551-73647570 | None:intergenic | 45.0% | |
CTGGAAAGTCTATTCCTCGA+TGG | + | chr3_4:73647725-73647744 | Msa0521040:CDS | 45.0% | |
!! | GTGAATCGACTTGCAAGACT+TGG | + | chr3_4:73647748-73647767 | Msa0521040:CDS | 45.0% |
ATCTACTATCTCCACCCCTA+AGG | + | chr3_4:73647904-73647923 | Msa0521040:three_prime_UTR | 45.0% | |
AGAAGCAGAACACATTCGTG+GGG | + | chr3_4:73648126-73648145 | Msa0521040:three_prime_UTR | 45.0% | |
CATGTAGGATGGAAGAGTTG+AGG | - | chr3_4:73648404-73648423 | None:intergenic | 45.0% | |
AGAGCTCTGCAGTCAAAATG+TGG | + | chr3_4:73648608-73648627 | Msa0521040:three_prime_UTR | 45.0% | |
AAATCAGAAGTCAGTCGAGC+AGG | + | chr3_4:73648899-73648918 | Msa0521040:three_prime_UTR | 45.0% | |
GATGCTTCCTCTAATCCTCA+AGG | + | chr3_4:73648925-73648944 | Msa0521040:three_prime_UTR | 45.0% | |
GTAGAGCAGTGTACCTTTAC+TGG | + | chr3_4:73649319-73649338 | Msa0521040:three_prime_UTR | 45.0% | |
!!! | ATTTAAAGTTTTTAAATAAT+TGG | - | chr3_4:73647951-73647970 | None:intergenic | 5.0% |
GAAGGTGGGTGAAGCAAAGT+AGG | + | chr3_4:73646984-73647003 | Msa0521040:five_prime_UTR | 50.0% | |
! | CAGCATGTATCGGTATCCAC+CGG | - | chr3_4:73647022-73647041 | None:intergenic | 50.0% |
AGATAAACAGGAACGGTGCC+TGG | - | chr3_4:73647297-73647316 | None:intergenic | 50.0% | |
!! | GGTCTTGGTGTCTACCATTC+AGG | + | chr3_4:73647363-73647382 | Msa0521040:CDS | 50.0% |
TGCAACCCAAGAACTGTCCT+GGG | + | chr3_4:73647542-73647561 | Msa0521040:CDS | 50.0% | |
CTTAAGATGGTCCTTAGGGG+TGG | - | chr3_4:73647918-73647937 | None:intergenic | 50.0% | |
GAAGCAGAACACATTCGTGG+GGG | + | chr3_4:73648127-73648146 | Msa0521040:three_prime_UTR | 50.0% | |
TTACTCTCTGTTGGGCCATG+AGG | + | chr3_4:73648260-73648279 | Msa0521040:three_prime_UTR | 50.0% | |
TACTCTCTGTTGGGCCATGA+GGG | + | chr3_4:73648261-73648280 | Msa0521040:three_prime_UTR | 50.0% | |
!! | TGGTTCATAGTGTCGGCCTT+GGG | - | chr3_4:73648474-73648493 | None:intergenic | 50.0% |
!! | TTGGTTCATAGTGTCGGCCT+TGG | - | chr3_4:73648475-73648494 | None:intergenic | 50.0% |
TCGGCAAGATACATCCGACA+AGG | + | chr3_4:73648855-73648874 | Msa0521040:three_prime_UTR | 50.0% | |
! | CATGTATCGGTATCCACCGG+CGG | - | chr3_4:73647019-73647038 | None:intergenic | 55.0% |
GTGCAACCCAAGAACTGTCC+TGG | + | chr3_4:73647541-73647560 | Msa0521040:CDS | 55.0% | |
! | GCAAGTCGATTCACCCATCG+AGG | - | chr3_4:73647742-73647761 | None:intergenic | 55.0% |
ACTCTCTGTTGGGCCATGAG+GGG | + | chr3_4:73648262-73648281 | Msa0521040:three_prime_UTR | 55.0% | |
AAGTAGGCACTTTCGGCCGC+CGG | + | chr3_4:73647000-73647019 | Msa0521040:five_prime_UTR | 60.0% | |
CAGAACACATTCGTGGGGGC+CGG | + | chr3_4:73648131-73648150 | Msa0521040:three_prime_UTR | 60.0% | |
AGAACACATTCGTGGGGGCC+GGG | + | chr3_4:73648132-73648151 | Msa0521040:three_prime_UTR | 60.0% | |
CTCTCTGTTGGGCCATGAGG+GGG | + | chr3_4:73648263-73648282 | Msa0521040:three_prime_UTR | 60.0% | |
TCCAATGAGGCTCCCCCTCA+TGG | - | chr3_4:73648278-73648297 | None:intergenic | 60.0% | |
GAGGGGGAGCCTCATTGGAT+TGG | + | chr3_4:73648279-73648298 | Msa0521040:three_prime_UTR | 60.0% | |
TGCAACTGCGTTCTTCCCCC+TGG | + | chr3_4:73648814-73648833 | Msa0521040:three_prime_UTR | 60.0% | |
GCCATGAGGGGGAGCCTCAT+TGG | + | chr3_4:73648274-73648293 | Msa0521040:three_prime_UTR | 65.0% | |
TAGGCACTTTCGGCCGCCGG+TGG | + | chr3_4:73647003-73647022 | Msa0521040:five_prime_UTR | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 73646908 | 73649379 | 73646908 | ID=Msa0521040;Name=Msa0521040 |
chr3_4 | mRNA | 73646908 | 73649379 | 73646908 | ID=Msa0521040-mRNA-1;Parent=Msa0521040;Name=Msa0521040-mRNA-1;_AED=0.00;_eAED=0.00;_QI=347|1|1|1|1|1|2|1602|144 |
chr3_4 | exon | 73646908 | 73647393 | 73646908 | ID=Msa0521040-mRNA-1:exon:20682;Parent=Msa0521040-mRNA-1 |
chr3_4 | exon | 73647482 | 73649379 | 73647482 | ID=Msa0521040-mRNA-1:exon:20683;Parent=Msa0521040-mRNA-1 |
chr3_4 | five_prime_UTR | 73646908 | 73647254 | 73646908 | ID=Msa0521040-mRNA-1:five_prime_utr;Parent=Msa0521040-mRNA-1 |
chr3_4 | CDS | 73647255 | 73647393 | 73647255 | ID=Msa0521040-mRNA-1:cds;Parent=Msa0521040-mRNA-1 |
chr3_4 | CDS | 73647482 | 73647777 | 73647482 | ID=Msa0521040-mRNA-1:cds;Parent=Msa0521040-mRNA-1 |
chr3_4 | three_prime_UTR | 73647778 | 73649379 | 73647778 | ID=Msa0521040-mRNA-1:three_prime_utr;Parent=Msa0521040-mRNA-1 |
Gene Sequence |
Protein sequence |