AlfalfaGEDB | Msa0382340

M. sativa cultivar zhongmu-4 / Msa0382340

KEGG: -
GO: -
PFAM: PF05903.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382340	XP_003603314.1	98.592	213	3	0	1	213	1	213	2.29e-155	439

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382340	sp\|Q93VG8\|PPDEX_ARATH	50.000	182	87	2	13	194	22	199	8.61e-70	215

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382340	G7J9W5	98.592	213	3	0	1	213	1	213	1.10e-155	439

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0350070	Msa0382340	0.800620	1.322964e-48	-8.615850e-47
Msa0372290	Msa0382340	0.829946	3.873269e-55	-8.615850e-47
Msa0382340	Msa0420530	0.833404	5.437904e-56	-8.615850e-47
Msa0382340	Msa0432190	0.895683	7.592010e-76	-8.615850e-47
Msa0382340	Msa0444170	0.807294	5.422017e-50	-8.615850e-47
Msa0382340	Msa0466780	0.822432	2.376818e-53	-8.615850e-47
Msa0382340	Msa0476710	0.969847	9.956118e-131	-8.615850e-47
Msa0382340	Msa0491730	0.808549	2.933097e-50	-8.615850e-47
Msa0382340	Msa0521040	0.903654	2.773979e-79	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382340	MtrunA17_Chr3g0137121	98.592	213	3	0	1	213	1	213	2.11e-159	439
Msa0382340	MtrunA17_Chr1g0149791	72.811	217	55	2	1	213	1	217	2.02e-117	333
Msa0382340	MtrunA17_Chr1g0154681	64.024	164	59	0	14	177	39	202	1.12e-80	241
Msa0382340	MtrunA17_Chr4g0002531	67.516	157	50	1	15	171	25	180	9.64e-78	233
Msa0382340	MtrunA17_Chr1g0162711	57.386	176	75	0	14	189	38	213	1.89e-76	230
Msa0382340	MtrunA17_Chr4g0055821	57.143	154	66	0	9	162	14	167	7.91e-69	209
Msa0382340	MtrunA17_Chr5g0399541	60.140	143	57	0	19	161	25	167	3.86e-68	208
Msa0382340	MtrunA17_Chr4g0063261	57.333	150	64	0	12	161	24	173	8.60e-64	197
Msa0382340	MtrunA17_Chr2g0306871	55.797	138	61	0	24	161	33	170	2.79e-60	188
Msa0382340	MtrunA17_Chr1g0202701	33.333	195	103	8	19	192	4	192	3.03e-23	93.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382340	AT5G25170.1	77.528	178	37	2	6	181	8	184	9.90e-101	291
Msa0382340	AT2G25190.1	70.588	170	50	0	10	179	10	179	5.03e-94	275
Msa0382340	AT1G80690.1	66.279	172	52	2	15	181	13	183	5.86e-81	241
Msa0382340	AT1G80690.2	65.341	176	51	3	15	181	13	187	7.56e-79	236
Msa0382340	AT1G47740.1	55.024	209	81	2	14	209	66	274	2.27e-78	236
Msa0382340	AT1G47740.2	55.024	209	81	2	14	209	66	274	2.27e-78	236
Msa0382340	AT1G47740.3	55.024	209	81	2	14	209	66	274	2.27e-78	236
Msa0382340	AT4G31980.1	66.061	165	56	0	1	165	1	165	1.24e-77	246
Msa0382340	AT5G25170.2	74.101	139	34	1	45	181	2	140	1.58e-72	218
Msa0382340	AT4G17486.1	50.000	182	87	2	13	194	22	199	8.76e-71	215

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Find 62 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATATTCGAGTATTCA+TGG	0.405447	3_1:-84814471	Msa0382340:CDS
AAACTAGCTCAAGAGTACTC+TGG	0.546204	3_1:-84814446	Msa0382340:CDS
AAATCAGAAGTCAGTCGAGC+AGG	0.509704	3_1:-84813184	Msa0382340:CDS
AACGGTTATGCTTATTGGCT+TGG	0.365043	3_1:-84814741	Msa0382340:CDS
AAGCAACATAAGATGATTCA+GGG	0.554705	3_1:-84813016	Msa0382340:three_prime_UTR
AAGGAGAAATTGAATTATGA+AGG	0.443125	3_1:+84814924	None:intergenic
ACCTTTGTTTCATTTAAGCC+AGG	0.453538	3_1:+84813251	None:intergenic
AGATAAACAGGAACGGTGCC+TGG	0.463481	3_1:+84814789	None:intergenic
AGCACATGAGAATGACACAA+CGG	0.687804	3_1:-84814576	Msa0382340:CDS
AGGAGAAATTGAATTATGAA+GGG	0.593092	3_1:+84814925	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCCAAGAAAAAGAATAATAG+TGG	+	chr3_1:84812757-84812776	None:intergenic	30.0%
GTAGTATTTGTGGTCAATTA+AGG	+	chr3_1:84812793-84812812	None:intergenic	30.0%
TTAAATTTGTAACAGGTCCT+AGG	-	chr3_1:84812945-84812964	Msa0382340:three_prime_UTR	30.0%
GACATTAAGATAAACAGGAA+CGG	+	chr3_1:84812987-84813006	None:intergenic	30.0%
CAATAAGCATAACCGTTAAT+GGG	+	chr3_1:84813022-84813041	None:intergenic	30.0%
AATTGCTGTATTTGTGTCTT+TGG	-	chr3_1:84813552-84813571	Msa0382340:intron	30.0%
AATTCTTAAGATGGTCCTTA+GGG	+	chr3_1:84813605-84813624	None:intergenic	30.0%
TGGACAAAGAATTCTTAAGA+TGG	+	chr3_1:84813614-84813633	None:intergenic	30.0%
ATTTCTAAATATAGGAACCC+TGG	+	chr3_1:84813694-84813713	None:intergenic	30.0%
CTTAGATAGACTAATGAATG+TGG	-	chr3_1:84813774-84813793	Msa0382340:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	84812728	84815060	84812728	ID=Msa0382340;Name=Msa0382340
chr3_1	mRNA	84812728	84815060	84812728	ID=Msa0382340-mRNA-1;Parent=Msa0382340;Name=Msa0382340-mRNA-1;_AED=0.23;_eAED=0.23;_QI=210\|1\|1\|1\|1\|1\|3\|357\|213
chr3_1	exon	84812728	84813299	84812728	ID=Msa0382340-mRNA-1:exon:22193;Parent=Msa0382340-mRNA-1
chr3_1	exon	84814336	84814623	84814336	ID=Msa0382340-mRNA-1:exon:22192;Parent=Msa0382340-mRNA-1
chr3_1	exon	84814712	84815060	84814712	ID=Msa0382340-mRNA-1:exon:22191;Parent=Msa0382340-mRNA-1
chr3_1	five_prime_UTR	84814851	84815060	84814851	ID=Msa0382340-mRNA-1:five_prime_utr;Parent=Msa0382340-mRNA-1
chr3_1	CDS	84814712	84814850	84814712	ID=Msa0382340-mRNA-1:cds;Parent=Msa0382340-mRNA-1
chr3_1	CDS	84814336	84814623	84814336	ID=Msa0382340-mRNA-1:cds;Parent=Msa0382340-mRNA-1
chr3_1	CDS	84813085	84813299	84813085	ID=Msa0382340-mRNA-1:cds;Parent=Msa0382340-mRNA-1
chr3_1	three_prime_UTR	84812728	84813084	84812728	ID=Msa0382340-mRNA-1:three_prime_utr;Parent=Msa0382340-mRNA-1

Gene Sequence

>Msa0382340

ATGTTGTTTAAATTTGTAACAGGTCCTAGGAAGACAAAACCAGGCACCGTTCCTGTTTATCTTAATGTCTATGATCTCACACCCATTAACGGTTATGCTTATTGGCTTGGTCTTGGTGTCTACCATTCAGGAGTTCAAGTTCATGATGTTGAATATGGTTTTGGAGCACATGAGAATGACACAACGGGAATTTTTGAAGTGCAACCCAAGAACTGTCCTGGGTTTACATTCAGAAAATCGATTTTTATTGGTACAACGGATCTGGGTACAAAAGATATTCGAGTATTCATGGAGAAACTAGCTCAAGAGTACTCTGGAAATTCGTATCATCTTATTTCCAAAAATTGCAACCATTTTTGTGATGATGTTTGTTACAAATTAACTGGAAAGTCTATTCCTCGATGGGTGAATCGACTTGCAAGACTTGGTTTATTCTGCAACTGCGTTCTTCCCCCTGGCTTAAATGAAACAAAGGTTCGGCAAGATACATCCGACAAGGTTGAAGAAAAAGAAAAGAGGAAAATCAGAAGTCAGTCGAGCAGGTGTGATGCTTCCTCTAATCCTCAAGGTTCATCAAGACATTGCTTTCCTCGATCATCTTTAATCAAAGCTTTGTCAACCACAACATTAACAGTAAAGTAA

Protein sequence

>Msa0382340

MLFKFVTGPRKTKPGTVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHDVEYGFGAHENDTTGIFEVQPKNCPGFTFRKSIFIGTTDLGTKDIRVFMEKLAQEYSGNSYHLISKNCNHFCDDVCYKLTGKSIPRWVNRLARLGLFCNCVLPPGLNETKVRQDTSDKVEEKEKRKIRSQSSRCDASSNPQGSSRHCFPRSSLIKALSTTTLTVK*