Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432400 | XP_003603346.1 | 99.526 | 211 | 0 | 1 | 1 | 211 | 1 | 210 | 3.04e-148 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432400 | sp|Q8VY97|Y4213_ARATH | 74.286 | 175 | 43 | 1 | 33 | 207 | 29 | 201 | 9.10e-84 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432400 | G7JAF8 | 99.526 | 211 | 0 | 1 | 1 | 211 | 1 | 210 | 1.45e-148 | 421 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0432400 | Msa0476830 | 0.982373 | 6.328315e-155 | -8.615850e-47 |
| Msa0432400 | Msa0521200 | 0.969625 | 2.130453e-130 | -8.615850e-47 |
| Msa0432400 | Msa0829120 | 0.981968 | 6.726830e-154 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432400 | MtrunA17_Chr3g0137401 | 99.526 | 211 | 0 | 1 | 1 | 211 | 1 | 210 | 2.80e-152 | 421 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0432400 | AT2G25310.1 | 72.637 | 201 | 51 | 2 | 10 | 210 | 13 | 209 | 4.90e-92 | 268 |
| Msa0432400 | AT4G32130.1 | 74.286 | 175 | 43 | 1 | 33 | 207 | 29 | 201 | 9.25e-85 | 249 |
Find 69 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGTATAATTTCTTTATT+TGG | 0.158836 | 3_2:-84555565 | Msa0432400:three_prime_UTR |
| TAATACTGTTCCTCCTTTAA+TGG | 0.168757 | 3_2:+84557303 | None:intergenic |
| ACCCATGTTCTCCATCAATT+TGG | 0.172914 | 3_2:+84557091 | None:intergenic |
| GTCCTCATGCCTAAATTATT+TGG | 0.186235 | 3_2:-84555543 | Msa0432400:three_prime_UTR |
| TGAGCACGTTTCATTTCTTC+TGG | 0.232081 | 3_2:+84555953 | None:intergenic |
| TCCGATGGGTACACTATTTA+TGG | 0.232266 | 3_2:-84558730 | Msa0432400:CDS |
| AATGTCAAAGTTATACTTAA+TGG | 0.264904 | 3_2:-84557814 | Msa0432400:CDS |
| ATTTGGTTTATGATCTGTTT+TGG | 0.300143 | 3_2:-84555526 | Msa0432400:three_prime_UTR |
| TTTCCTTATGCCCAAATTGA+TGG | 0.308008 | 3_2:-84557102 | Msa0432400:CDS |
| GATCATAAACCAAATAATTT+AGG | 0.315950 | 3_2:+84555534 | None:intergenic |
| CTCTGAATATTGGCAATCTA+TGG | 0.334167 | 3_2:-84558949 | Msa0432400:exon |
| AATGTGAAACATACATGAAT+AGG | 0.340448 | 3_2:-84555678 | Msa0432400:three_prime_UTR |
| CAGAAACCCTGGCAAAATTC+AGG | 0.352622 | 3_2:-84557373 | Msa0432400:CDS |
| CCCATGTTCTCCATCAATTT+GGG | 0.365935 | 3_2:+84557092 | None:intergenic |
| AGGCAGCACTGACAGAAAAT+AGG | 0.378833 | 3_2:-84557353 | Msa0432400:CDS |
| TCTCCATCAATTTGGGCATA+AGG | 0.387908 | 3_2:+84557099 | None:intergenic |
| ATGCACCACCAATATGGATA+TGG | 0.393207 | 3_2:-84555601 | Msa0432400:three_prime_UTR |
| ACAAGCAACCATATCCATAT+TGG | 0.425328 | 3_2:+84555593 | None:intergenic |
| ATAGCCATGCACCACCAATA+TGG | 0.426630 | 3_2:-84555607 | Msa0432400:three_prime_UTR |
| GAGTCCCTGCAGGCACGTTA+TGG | 0.435724 | 3_2:+84557561 | None:intergenic |
| CTAGTTGCTTCTTGCAGCAC+CGG | 0.438332 | 3_2:+84555883 | None:intergenic |
| TTCAGCCATAACGTGCCTGC+AGG | 0.459980 | 3_2:-84557566 | Msa0432400:intron |
| TTCGCTCAATCCCCTACCCC+TGG | 0.471489 | 3_2:-84558855 | Msa0432400:CDS |
| TTAATTGAAGTGGCTGCAAA+AGG | 0.475291 | 3_2:-84557536 | Msa0432400:CDS |
| TTCTTCTGCAGGTCTTCCGA+TGG | 0.484478 | 3_2:-84558745 | Msa0432400:intron |
| CAAGAAGAAATGAGAAATCA+AGG | 0.494262 | 3_2:-84555932 | Msa0432400:CDS |
| AAAGGAGGAACAGTATTATG+AGG | 0.495382 | 3_2:-84557298 | Msa0432400:intron |
| AGAAAGCAAGTGCAGTTACA+TGG | 0.495922 | 3_2:+84555652 | None:intergenic |
| TTTACAAGCATTAGCAGGCA+TGG | 0.497892 | 3_2:+84555467 | None:intergenic |
| GGTAACAAGCTTGCTAAAGA+TGG | 0.499603 | 3_2:+84555905 | None:intergenic |
| TATATCTTCAGCTTCTGCTC+AGG | 0.500434 | 3_2:+84555817 | None:intergenic |
| GAAATTGATACCCAGGGGTA+GGG | 0.501096 | 3_2:+84558844 | None:intergenic |
| GCCCAAATTGATGGAGAACA+TGG | 0.506778 | 3_2:-84557093 | Msa0432400:CDS |
| TCCATTGTGAAAAGTCCAAT+GGG | 0.507206 | 3_2:-84557155 | Msa0432400:CDS |
| TACAATGAGAAATATCCATC+AGG | 0.508843 | 3_2:+84557766 | None:intergenic |
| GGGGATTGAGCGAATGATGA+GGG | 0.521949 | 3_2:+84558864 | None:intergenic |
| TGAAAACACACTGATCTGTT+CGG | 0.526487 | 3_2:+84558975 | None:intergenic |
| AAGTCCAATGGGTCTGATGA+TGG | 0.529960 | 3_2:-84557144 | Msa0432400:CDS |
| GTCCATTGTGAAAAGTCCAA+TGG | 0.530848 | 3_2:-84557156 | Msa0432400:CDS |
| AAATTGATACCCAGGGGTAG+GGG | 0.531505 | 3_2:+84558845 | None:intergenic |
| AATCCCATCATCAGACCCAT+TGG | 0.537133 | 3_2:+84557140 | None:intergenic |
| AGTCCAATGGGTCTGATGAT+GGG | 0.541406 | 3_2:-84557143 | Msa0432400:CDS |
| ACAATGGACATAATAGAGAA+TGG | 0.546124 | 3_2:+84557170 | None:intergenic |
| GTATATTGCGTGCGCAAAAG+CGG | 0.547989 | 3_2:-84559034 | Msa0432400:five_prime_UTR |
| GATGTTAGTGCCAGAAACCC+TGG | 0.551828 | 3_2:-84557384 | Msa0432400:CDS |
| AGGGACTCATTTAATTGAAG+TGG | 0.553198 | 3_2:-84557546 | Msa0432400:CDS |
| CAGCACTGACAGAAAATAGG+AGG | 0.557041 | 3_2:-84557350 | Msa0432400:CDS |
| TCGCTCAATCCCCTACCCCT+GGG | 0.564664 | 3_2:-84558854 | Msa0432400:intron |
| TGAAATTGATACCCAGGGGT+AGG | 0.565785 | 3_2:+84558843 | None:intergenic |
| AGCAACCATATCCATATTGG+TGG | 0.567127 | 3_2:+84555596 | None:intergenic |
| TAGTTGCTTCTTGCAGCACC+GGG | 0.567421 | 3_2:+84555884 | None:intergenic |
| TCAATTAAATGAGTCCCTGC+AGG | 0.577390 | 3_2:+84557551 | None:intergenic |
| AGGGGATTGAGCGAATGATG+AGG | 0.577465 | 3_2:+84558863 | None:intergenic |
| TCTTTAGCAAGCTTGTTACC+CGG | 0.579704 | 3_2:-84555902 | Msa0432400:CDS |
| ATGAGAACCAGCGAGTACAT+TGG | 0.587034 | 3_2:-84555844 | Msa0432400:three_prime_UTR |
| AGGAAAACCAATGTACTCGC+TGG | 0.587347 | 3_2:+84555837 | None:intergenic |
| AATAACAAAATTCTCTATCA+CGG | 0.589670 | 3_2:+84555787 | None:intergenic |
| AAGAAAGAGTGATTTCGTGA+AGG | 0.590259 | 3_2:+84558923 | None:intergenic |
| AACCAAATAATTTAGGCATG+AGG | 0.590752 | 3_2:+84555541 | None:intergenic |
| TCTTCTGCAGGTCTTCCGAT+GGG | 0.594131 | 3_2:-84558744 | Msa0432400:intron |
| ATATCCATATTGGTGGTGCA+TGG | 0.596001 | 3_2:+84555603 | None:intergenic |
| CACTGACAGAAAATAGGAGG+GGG | 0.615655 | 3_2:-84557347 | Msa0432400:CDS |
| GTCAAAGTTATACTTAATGG+TGG | 0.622746 | 3_2:-84557811 | Msa0432400:CDS |
| TCAGCCATAACGTGCCTGCA+GGG | 0.625157 | 3_2:-84557565 | Msa0432400:intron |
| AGCACTGACAGAAAATAGGA+GGG | 0.637222 | 3_2:-84557349 | Msa0432400:CDS |
| ACCATAAATAGTGTACCCAT+CGG | 0.641346 | 3_2:+84558729 | None:intergenic |
| CCCAAATTGATGGAGAACAT+GGG | 0.655293 | 3_2:-84557092 | Msa0432400:intron |
| GCACTGACAGAAAATAGGAG+GGG | 0.661192 | 3_2:-84557348 | Msa0432400:CDS |
| ATCTGTGATTGTATACGCTG+TGG | 0.672240 | 3_2:-84555744 | Msa0432400:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATAAAAAAAAAAAATAG+GGG | + | chr3_2:84555864-84555883 | None:intergenic | 10.0% |
| !! | ATTAAAAATCAAATATAAAC+TGG | + | chr3_2:84556123-84556142 | None:intergenic | 10.0% |
| !!! | TATGAAATATTTAGAATTTT+AGG | - | chr3_2:84556142-84556161 | Msa0432400:intron | 10.0% |
| !! | AAGTAAATATAGAATTAAAT+AGG | + | chr3_2:84556828-84556847 | None:intergenic | 10.0% |
| !! | AAAACAAAAAAAAAAATTAG+GGG | + | chr3_2:84557042-84557061 | None:intergenic | 10.0% |
| !! | GAAAACAAAAAAAAAAATTA+GGG | + | chr3_2:84557043-84557062 | None:intergenic | 10.0% |
| !! | AAATTTAAATTCAAGAAAAT+GGG | + | chr3_2:84558042-84558061 | None:intergenic | 10.0% |
| !! | AAAATTTAAATTCAAGAAAA+TGG | + | chr3_2:84558043-84558062 | None:intergenic | 10.0% |
| !!! | TGAATTTAAATTTTAATGTT+CGG | - | chr3_2:84558049-84558068 | Msa0432400:intron | 10.0% |
| !! | ATCGAAAAATTGAAAAATTA+GGG | + | chr3_2:84555694-84555713 | None:intergenic | 15.0% |
| !! | AATCGAAAAATTGAAAAATT+AGG | + | chr3_2:84555695-84555714 | None:intergenic | 15.0% |
| !! | TATTAAATTCGTTAAAATCA+AGG | + | chr3_2:84555733-84555752 | None:intergenic | 15.0% |
| !!! | AATTACAAAAATAGCATTTT+TGG | - | chr3_2:84556313-84556332 | Msa0432400:intron | 15.0% |
| !! | GGAAAACAAAAAAAAAAATT+AGG | + | chr3_2:84557044-84557063 | None:intergenic | 15.0% |
| !!! | TGAATTTGAATTTTCTTATA+GGG | - | chr3_2:84558785-84558804 | Msa0432400:intron | 15.0% |
| !! | CATTGTATAATTTCTTTATT+TGG | - | chr3_2:84558935-84558954 | Msa0432400:exon | 15.0% |
| !! | ATTGAAAAATTAGGGTTTAA+GGG | + | chr3_2:84555686-84555705 | None:intergenic | 20.0% |
| !! | AATTGAAAAATTAGGGTTTA+AGG | + | chr3_2:84555687-84555706 | None:intergenic | 20.0% |
| !! | ATGAATCTTATAATGATGAA+AGG | + | chr3_2:84555824-84555843 | None:intergenic | 20.0% |
| !!! | TTAAACATCAAACATTGATT+GGG | + | chr3_2:84555894-84555913 | None:intergenic | 20.0% |
| !! | ATTAAACATCAAACATTGAT+TGG | + | chr3_2:84555895-84555914 | None:intergenic | 20.0% |
| !! | AATGTCAAAGTTATACTTAA+TGG | - | chr3_2:84556686-84556705 | Msa0432400:intron | 20.0% |
| !! | GAAATAAAGTTGTAAATCAA+AGG | + | chr3_2:84556761-84556780 | None:intergenic | 20.0% |
| !!! | TAATTTGCATGAAAACTTTT+TGG | - | chr3_2:84556791-84556810 | Msa0432400:intron | 20.0% |
| !!! | AATTTGCATGAAAACTTTTT+GGG | - | chr3_2:84556792-84556811 | Msa0432400:intron | 20.0% |
| !!! | TACTTATTTTGTTTTGCTTT+TGG | - | chr3_2:84556843-84556862 | Msa0432400:intron | 20.0% |
| !!! | ACTTATTTTGTTTTGCTTTT+GGG | - | chr3_2:84556844-84556863 | Msa0432400:intron | 20.0% |
| !!! | AAGTTATAGTTGATTGATTT+TGG | - | chr3_2:84556867-84556886 | Msa0432400:intron | 20.0% |
| !! | ACATTCAGATAATAATCTTA+AGG | + | chr3_2:84557272-84557291 | None:intergenic | 20.0% |
| !! | AAATGAAAGAAGTTTATAGA+TGG | + | chr3_2:84557449-84557468 | None:intergenic | 20.0% |
| !!! | TCAAAAATGTAAAAGTATAC+TGG | + | chr3_2:84558296-84558315 | None:intergenic | 20.0% |
| !! | AATAACAAAATTCTCTATCA+CGG | + | chr3_2:84558716-84558735 | None:intergenic | 20.0% |
| !!! | GAATTTTGTTATTAACAAGT+TGG | - | chr3_2:84558723-84558742 | Msa0432400:CDS | 20.0% |
| !!! | CTGAATTTGAATTTTCTTAT+AGG | - | chr3_2:84558784-84558803 | Msa0432400:intron | 20.0% |
| !! | GATCATAAACCAAATAATTT+AGG | + | chr3_2:84558969-84558988 | None:intergenic | 20.0% |
| !!! | TTTCAATTTTTCGATTGCAT+CGG | - | chr3_2:84555699-84555718 | Msa0432400:three_prime_UTR | 25.0% |
| ! | AATTTAATAACTTCTTCTGC+AGG | - | chr3_2:84555744-84555763 | Msa0432400:three_prime_UTR | 25.0% |
| ! | ATCTTATAATGATGAAAGGT+GGG | + | chr3_2:84555820-84555839 | None:intergenic | 25.0% |
| ! | AATCTTATAATGATGAAAGG+TGG | + | chr3_2:84555821-84555840 | None:intergenic | 25.0% |
| !! | TTTTAGGCTAAAACAATGTT+TGG | - | chr3_2:84556158-84556177 | Msa0432400:intron | 25.0% |
| ! | TAAAAACAAAATAGTGCACA+AGG | + | chr3_2:84556228-84556247 | None:intergenic | 25.0% |
| !!! | AAATAGCATTTTTGGTTTCA+TGG | - | chr3_2:84556321-84556340 | Msa0432400:intron | 25.0% |
| !! | CCTATATAACTCTTTGAAAA+TGG | + | chr3_2:84556352-84556371 | None:intergenic | 25.0% |
| !! | CCATTTTCAAAGAGTTATAT+AGG | - | chr3_2:84556349-84556368 | Msa0432400:intron | 25.0% |
| !! | CATGGATTTTCTATAAATGT+TGG | - | chr3_2:84556570-84556589 | Msa0432400:intron | 25.0% |
| !! | TATAAATGTTGGTTGTATGA+TGG | - | chr3_2:84556581-84556600 | Msa0432400:intron | 25.0% |
| !! | ATTTGCATGAAAACTTTTTG+GGG | - | chr3_2:84556793-84556812 | Msa0432400:intron | 25.0% |
| ! | TTTAATACATGAGCAAACAT+AGG | + | chr3_2:84557065-84557084 | None:intergenic | 25.0% |
| ! | TTATTGTGTCCATTAACAAA+AGG | - | chr3_2:84557085-84557104 | Msa0432400:intron | 25.0% |
| ! | GATAATAATCTTAAGGAATG+TGG | + | chr3_2:84557265-84557284 | None:intergenic | 25.0% |
| !!! | ATCTTGTTTTTCTACAGATT+AGG | - | chr3_2:84557304-84557323 | Msa0432400:CDS | 25.0% |
| !!! | TCTTGTTTTTCTACAGATTA+GGG | - | chr3_2:84557305-84557324 | Msa0432400:CDS | 25.0% |
| !!! | GTTTATAGATGGATTTTAGA+AGG | + | chr3_2:84557438-84557457 | None:intergenic | 25.0% |
| ! | ACAAATAAGAAAAACTCGAA+AGG | + | chr3_2:84557472-84557491 | None:intergenic | 25.0% |
| !!! | TTTCTTATTTGTTGTCTATG+TGG | - | chr3_2:84557480-84557499 | Msa0432400:intron | 25.0% |
| ! | AAATGATTACTCATTACCTT+AGG | - | chr3_2:84557525-84557544 | Msa0432400:CDS | 25.0% |
| ! | GTTTCATAAAATTCTACCTA+AGG | + | chr3_2:84557544-84557563 | None:intergenic | 25.0% |
| !!! | TTAGGGAGAGAAATTTTTTT+TGG | + | chr3_2:84557712-84557731 | None:intergenic | 25.0% |
| !! | TCATTAATAAGAGCACATTA+GGG | + | chr3_2:84557729-84557748 | None:intergenic | 25.0% |
| ! | GTTAAAAAATCACAATCATG+AGG | - | chr3_2:84557818-84557837 | Msa0432400:CDS | 25.0% |
| ! | GCAAAACATAGAAGAAAATA+CGG | + | chr3_2:84558219-84558238 | None:intergenic | 25.0% |
| ! | TATGTATTGCAAACTTCTAA+GGG | + | chr3_2:84558327-84558346 | None:intergenic | 25.0% |
| ! | AATGTGAAACATACATGAAT+AGG | - | chr3_2:84558822-84558841 | Msa0432400:intron | 25.0% |
| !!! | ATTTGGTTTATGATCTGTTT+TGG | - | chr3_2:84558974-84558993 | Msa0432400:five_prime_UTR | 25.0% |
| ! | GTTTTCACAACTCTGAATAT+TGG | - | chr3_2:84555541-84555560 | Msa0432400:three_prime_UTR | 30.0% |
| ATTGATTATTGCATCCTTGA+TGG | - | chr3_2:84556010-84556029 | Msa0432400:intron | 30.0% | |
| TTGATTATTGCATCCTTGAT+GGG | - | chr3_2:84556011-84556030 | Msa0432400:intron | 30.0% | |
| ! | ACTGATAATGCATTAAAGCA+TGG | + | chr3_2:84556204-84556223 | None:intergenic | 30.0% |
| ! | CAACAAACTAAGAGTATGTT+TGG | - | chr3_2:84556260-84556279 | Msa0432400:intron | 30.0% |
| AGTTAATGATTTAGCTATCC+AGG | - | chr3_2:84556462-84556481 | Msa0432400:intron | 30.0% | |
| ! | ATCTATTTTGTGAGGATACA+TGG | - | chr3_2:84556552-84556571 | Msa0432400:intron | 30.0% |
| !! | TTGACATTTGAAACTTTTGC+AGG | + | chr3_2:84556674-84556693 | None:intergenic | 30.0% |
| GTCAAAGTTATACTTAATGG+TGG | - | chr3_2:84556689-84556708 | Msa0432400:intron | 30.0% | |
| TACAATGAGAAATATCCATC+AGG | + | chr3_2:84556737-84556756 | None:intergenic | 30.0% | |
| ! | TTTTCATGCAAATTATGAGC+AGG | + | chr3_2:84556786-84556805 | None:intergenic | 30.0% |
| !!! | GTTTGTTTTAGAGCCATTAA+AGG | - | chr3_2:84557184-84557203 | Msa0432400:intron | 30.0% |
| TAATACTGTTCCTCCTTTAA+TGG | + | chr3_2:84557200-84557219 | None:intergenic | 30.0% | |
| TAATCTTAAGGAATGTGGAA+AGG | + | chr3_2:84557260-84557279 | None:intergenic | 30.0% | |
| ACAATGGACATAATAGAGAA+TGG | + | chr3_2:84557333-84557352 | None:intergenic | 30.0% | |
| !!! | GAGAAATTTTTTTTGGAGCA+TGG | + | chr3_2:84557705-84557724 | None:intergenic | 30.0% |
| ! | CTCATTAATAAGAGCACATT+AGG | + | chr3_2:84557730-84557749 | None:intergenic | 30.0% |
| ! | GTCCTATTTGAAATACTTTG+TGG | - | chr3_2:84557749-84557768 | Msa0432400:intron | 30.0% |
| ! | GACCACAAAGTATTTCAAAT+AGG | + | chr3_2:84557754-84557773 | None:intergenic | 30.0% |
| ATAAACAAAGCACAGCTTAT+GGG | + | chr3_2:84557778-84557797 | None:intergenic | 30.0% | |
| AATAAACAAAGCACAGCTTA+TGG | + | chr3_2:84557779-84557798 | None:intergenic | 30.0% | |
| TAAGCCTATTTAGTCAATAG+CGG | - | chr3_2:84557866-84557885 | Msa0432400:intron | 30.0% | |
| TAACAAACATGTGAGAAACA+AGG | + | chr3_2:84558166-84558185 | None:intergenic | 30.0% | |
| GTATGTATTGCAAACTTCTA+AGG | + | chr3_2:84558328-84558347 | None:intergenic | 30.0% | |
| CATTTCATCACACGAAATTA+TGG | + | chr3_2:84558399-84558418 | None:intergenic | 30.0% | |
| CATAATTTCGTGTGATGAAA+TGG | - | chr3_2:84558397-84558416 | Msa0432400:intron | 30.0% | |
| CTCATATCTTGAATGTATTG+TGG | - | chr3_2:84558514-84558533 | Msa0432400:intron | 30.0% | |
| CAAGAAGAAATGAGAAATCA+AGG | - | chr3_2:84558568-84558587 | Msa0432400:intron | 30.0% | |
| AACCAAATAATTTAGGCATG+AGG | + | chr3_2:84558962-84558981 | None:intergenic | 30.0% | |
| !!! | CATTTTTTACAAGCATTAGC+AGG | + | chr3_2:84559041-84559060 | None:intergenic | 30.0% |
| TGAAAACACACTGATCTGTT+CGG | + | chr3_2:84555528-84555547 | None:intergenic | 35.0% | |
| CTCTGAATATTGGCAATCTA+TGG | - | chr3_2:84555551-84555570 | Msa0432400:three_prime_UTR | 35.0% | |
| AAGAAAGAGTGATTTCGTGA+AGG | + | chr3_2:84555580-84555599 | None:intergenic | 35.0% | |
| GATATGAAATTGATACCCAG+GGG | + | chr3_2:84555664-84555683 | None:intergenic | 35.0% | |
| GGATATGAAATTGATACCCA+GGG | + | chr3_2:84555665-84555684 | None:intergenic | 35.0% | |
| ACCATAAATAGTGTACCCAT+CGG | + | chr3_2:84555774-84555793 | None:intergenic | 35.0% | |
| !! | TCATAGTACATGATTTGCTG+TGG | - | chr3_2:84555980-84555999 | Msa0432400:intron | 35.0% |
| CAAGGATGCAATAATCAATC+AGG | + | chr3_2:84556009-84556028 | None:intergenic | 35.0% | |
| CTTTCAAGCAAAGTCAATTC+AGG | + | chr3_2:84556079-84556098 | None:intergenic | 35.0% | |
| ACTGGCAAAAACTTTAAACC+AGG | + | chr3_2:84556105-84556124 | None:intergenic | 35.0% | |
| ! | CCTTGATCAGATTTTTCTAG+CGG | - | chr3_2:84556404-84556423 | Msa0432400:intron | 35.0% |
| !! | TAGTTTTGCCAAGTTCATCA+AGG | - | chr3_2:84556430-84556449 | Msa0432400:intron | 35.0% |
| GTAGTGTGCATTTGTGAATA+CGG | + | chr3_2:84556520-84556539 | None:intergenic | 35.0% | |
| ACAAAATAGATGCACAACGA+CGG | + | chr3_2:84556543-84556562 | None:intergenic | 35.0% | |
| ! | ATGGTATCACTGGATCTTTT+TGG | - | chr3_2:84556619-84556638 | Msa0432400:intron | 35.0% |
| ! | GTCAAAGAGTTTCTTTTCTG+AGG | - | chr3_2:84556711-84556730 | Msa0432400:intron | 35.0% |
| AGGGACTCATTTAATTGAAG+TGG | - | chr3_2:84556954-84556973 | Msa0432400:intron | 35.0% | |
| TTAATTGAAGTGGCTGCAAA+AGG | - | chr3_2:84556964-84556983 | Msa0432400:intron | 35.0% | |
| TTTCCAAATTGAGTACTCAC+TGG | + | chr3_2:84557003-84557022 | None:intergenic | 35.0% | |
| ! | CAACTCGTACCTTTTGTTAA+TGG | + | chr3_2:84557097-84557116 | None:intergenic | 35.0% |
| !!! | TGTTTTAGAGCCATTAAAGG+AGG | - | chr3_2:84557187-84557206 | Msa0432400:intron | 35.0% |
| AAAGGAGGAACAGTATTATG+AGG | - | chr3_2:84557202-84557221 | Msa0432400:intron | 35.0% | |
| TCCATTGTGAAAAGTCCAAT+GGG | - | chr3_2:84557345-84557364 | Msa0432400:CDS | 35.0% | |
| TTTCCTTATGCCCAAATTGA+TGG | - | chr3_2:84557398-84557417 | Msa0432400:intron | 35.0% | |
| AAAACAGAAACAGCTGCTAT+GGG | + | chr3_2:84557576-84557595 | None:intergenic | 35.0% | |
| TAAACAAAGCACAGCTTATG+GGG | + | chr3_2:84557777-84557796 | None:intergenic | 35.0% | |
| ! | TATGCATCTTGTGTGCTTTT+GGG | - | chr3_2:84557841-84557860 | Msa0432400:CDS | 35.0% |
| AAGCCTATTTAGTCAATAGC+GGG | - | chr3_2:84557867-84557886 | Msa0432400:intron | 35.0% | |
| ! | GACTTCTATGTTTCGAGTAT+CGG | - | chr3_2:84558250-84558269 | Msa0432400:intron | 35.0% |
| AAGTATACTGGACATAGAAG+AGG | + | chr3_2:84558284-84558303 | None:intergenic | 35.0% | |
| TCATACTGTTTCAGAGATGA+TGG | + | chr3_2:84558426-84558445 | None:intergenic | 35.0% | |
| !! | CATCTCTGAAACAGTATGAA+TGG | - | chr3_2:84558427-84558446 | Msa0432400:intron | 35.0% |
| ACAAGCAACCATATCCATAT+TGG | + | chr3_2:84558910-84558929 | None:intergenic | 35.0% | |
| GTCCTCATGCCTAAATTATT+TGG | - | chr3_2:84558957-84558976 | Msa0432400:five_prime_UTR | 35.0% | |
| GGGATATGAAATTGATACCC+AGG | + | chr3_2:84555666-84555685 | None:intergenic | 40.0% | |
| TCCGATGGGTACACTATTTA+TGG | - | chr3_2:84555770-84555789 | Msa0432400:three_prime_UTR | 40.0% | |
| TGAAAGGTGGGAACTTACTA+GGG | + | chr3_2:84555808-84555827 | None:intergenic | 40.0% | |
| ATGAAAGGTGGGAACTTACT+AGG | + | chr3_2:84555809-84555828 | None:intergenic | 40.0% | |
| TGAACTTCGATCAGTAAACG+AGG | - | chr3_2:84555951-84555970 | Msa0432400:CDS | 40.0% | |
| TCCTTGATGGGACTGTTAAT+CGG | - | chr3_2:84556023-84556042 | Msa0432400:intron | 40.0% | |
| GACTTTGCTTGAAAGTTACC+TGG | - | chr3_2:84556084-84556103 | Msa0432400:intron | 40.0% | |
| CCGCTAGAAAAATCTGATCA+AGG | + | chr3_2:84556407-84556426 | None:intergenic | 40.0% | |
| TTTGCCAAGTTCATCAAGGT+TGG | - | chr3_2:84556434-84556453 | Msa0432400:intron | 40.0% | |
| TTGCCAAGTTCATCAAGGTT+GGG | - | chr3_2:84556435-84556454 | Msa0432400:intron | 40.0% | |
| AACTTTGACAGTTCAACTCC+TGG | + | chr3_2:84556483-84556502 | None:intergenic | 40.0% | |
| CAAAATAGATGCACAACGAC+GGG | + | chr3_2:84556542-84556561 | None:intergenic | 40.0% | |
| ! | CGTTGTGCATCTATTTTGTG+AGG | - | chr3_2:84556544-84556563 | Msa0432400:intron | 40.0% |
| ATGGTATCGCTGGAGTATAA+TGG | - | chr3_2:84556600-84556619 | Msa0432400:intron | 40.0% | |
| CTGGAGTATAATGGTATCAC+TGG | - | chr3_2:84556609-84556628 | Msa0432400:intron | 40.0% | |
| !! | TATCACTGGATCTTTTTGGC+AGG | - | chr3_2:84556623-84556642 | Msa0432400:intron | 40.0% |
| !! | TGGATCTTTTTGGCAGGTTT+TGG | - | chr3_2:84556629-84556648 | Msa0432400:intron | 40.0% |
| AGCATTCACGTTAAGGAACT+TGG | + | chr3_2:84556914-84556933 | None:intergenic | 40.0% | |
| TCAATTAAATGAGTCCCTGC+AGG | + | chr3_2:84556952-84556971 | None:intergenic | 40.0% | |
| TCTCCAGTGAGTACTCAATT+TGG | - | chr3_2:84556997-84557016 | Msa0432400:intron | 40.0% | |
| !! | AGCACTGACAGAAAATAGGA+GGG | - | chr3_2:84557151-84557170 | Msa0432400:CDS | 40.0% |
| GAGGAACAGTATTATGAGGT+TGG | - | chr3_2:84557206-84557225 | Msa0432400:intron | 40.0% | |
| ATGTGGAAAGGAACACAAAC+AGG | + | chr3_2:84557248-84557267 | None:intergenic | 40.0% | |
| GTCCATTGTGAAAAGTCCAA+TGG | - | chr3_2:84557344-84557363 | Msa0432400:CDS | 40.0% | |
| ! | ACCCATTGGACTTTTCACAA+TGG | + | chr3_2:84557349-84557368 | None:intergenic | 40.0% |
| TCTCCATCAATTTGGGCATA+AGG | + | chr3_2:84557404-84557423 | None:intergenic | 40.0% | |
| CCCATGTTCTCCATCAATTT+GGG | + | chr3_2:84557411-84557430 | None:intergenic | 40.0% | |
| CCCAAATTGATGGAGAACAT+GGG | - | chr3_2:84557408-84557427 | Msa0432400:intron | 40.0% | |
| ACCCATGTTCTCCATCAATT+TGG | + | chr3_2:84557412-84557431 | None:intergenic | 40.0% | |
| CAAAACAGAAACAGCTGCTA+TGG | + | chr3_2:84557577-84557596 | None:intergenic | 40.0% | |
| GAGAGAGGAAGAAAGATAAG+AGG | + | chr3_2:84557645-84557664 | None:intergenic | 40.0% | |
| !!! | TTTTTTTGGAGCATGGAGAG+AGG | + | chr3_2:84557698-84557717 | None:intergenic | 40.0% |
| AAACAAAGCACAGCTTATGG+GGG | + | chr3_2:84557776-84557795 | None:intergenic | 40.0% | |
| ! | GTATGCATCTTGTGTGCTTT+TGG | - | chr3_2:84557840-84557859 | Msa0432400:CDS | 40.0% |
| AGCCTATTTAGTCAATAGCG+GGG | - | chr3_2:84557868-84557887 | Msa0432400:intron | 40.0% | |
| ! | TGAGCATTTGAGTTTCACAG+AGG | + | chr3_2:84557996-84558015 | None:intergenic | 40.0% |
| ACTCGAAACATAGAAGTCAC+AGG | + | chr3_2:84558248-84558267 | None:intergenic | 40.0% | |
| ACCTATACAGCACAGTATTG+TGG | - | chr3_2:84558471-84558490 | Msa0432400:intron | 40.0% | |
| TGAGCACGTTTCATTTCTTC+TGG | + | chr3_2:84558550-84558569 | None:intergenic | 40.0% | |
| !! | GGTAACAAGCTTGCTAAAGA+TGG | + | chr3_2:84558598-84558617 | None:intergenic | 40.0% |
| !! | TCTTTAGCAAGCTTGTTACC+CGG | - | chr3_2:84558598-84558617 | Msa0432400:intron | 40.0% |
| TATATCTTCAGCTTCTGCTC+AGG | + | chr3_2:84558686-84558705 | None:intergenic | 40.0% | |
| ATCTGTGATTGTATACGCTG+TGG | - | chr3_2:84558756-84558775 | Msa0432400:intron | 40.0% | |
| AGAAAGCAAGTGCAGTTACA+TGG | + | chr3_2:84558851-84558870 | None:intergenic | 40.0% | |
| !! | ATATCCATATTGGTGGTGCA+TGG | + | chr3_2:84558900-84558919 | None:intergenic | 40.0% |
| ATGCACCACCAATATGGATA+TGG | - | chr3_2:84558899-84558918 | Msa0432400:CDS | 40.0% | |
| AGCAACCATATCCATATTGG+TGG | + | chr3_2:84558907-84558926 | None:intergenic | 40.0% | |
| !!! | ATGATCTGTTTTGGCTGCAT+TGG | - | chr3_2:84558983-84559002 | Msa0432400:five_prime_UTR | 40.0% |
| !!! | TGATCTGTTTTGGCTGCATT+GGG | - | chr3_2:84558984-84559003 | Msa0432400:five_prime_UTR | 40.0% |
| TTTACAAGCATTAGCAGGCA+TGG | + | chr3_2:84559036-84559055 | None:intergenic | 40.0% | |
| GTATATTGCGTGCGCAAAAG+CGG | - | chr3_2:84555466-84555485 | Msa0432400:three_prime_UTR | 45.0% | |
| AAATTGATACCCAGGGGTAG+GGG | + | chr3_2:84555658-84555677 | None:intergenic | 45.0% | |
| GAAATTGATACCCAGGGGTA+GGG | + | chr3_2:84555659-84555678 | None:intergenic | 45.0% | |
| TGAAATTGATACCCAGGGGT+AGG | + | chr3_2:84555660-84555679 | None:intergenic | 45.0% | |
| ACCGATTAACAGTCCCATCA+AGG | + | chr3_2:84556027-84556046 | None:intergenic | 45.0% | |
| TGCCAAGTTCATCAAGGTTG+GGG | - | chr3_2:84556436-84556455 | Msa0432400:intron | 45.0% | |
| TGGTTGTATGATGGTATCGC+TGG | - | chr3_2:84556590-84556609 | Msa0432400:intron | 45.0% | |
| !!! | GTTTCTTTTCTGAGGCCTGA+TGG | - | chr3_2:84556719-84556738 | Msa0432400:intron | 45.0% |
| !! | GGCTGAAAGCATTCACGTTA+AGG | + | chr3_2:84556921-84556940 | None:intergenic | 45.0% |
| ! | CTGAATTTTGCCAGGGTTTC+TGG | + | chr3_2:84557129-84557148 | None:intergenic | 45.0% |
| CAGAAACCCTGGCAAAATTC+AGG | - | chr3_2:84557127-84557146 | Msa0432400:CDS | 45.0% | |
| !! | AGGCAGCACTGACAGAAAAT+AGG | - | chr3_2:84557147-84557166 | Msa0432400:CDS | 45.0% |
| !! | CAGCACTGACAGAAAATAGG+AGG | - | chr3_2:84557150-84557169 | Msa0432400:CDS | 45.0% |
| ! | GCACTGACAGAAAATAGGAG+GGG | - | chr3_2:84557152-84557171 | Msa0432400:CDS | 45.0% |
| CACTGACAGAAAATAGGAGG+GGG | - | chr3_2:84557153-84557172 | Msa0432400:CDS | 45.0% | |
| AAGTCCAATGGGTCTGATGA+TGG | - | chr3_2:84557356-84557375 | Msa0432400:CDS | 45.0% | |
| AGTCCAATGGGTCTGATGAT+GGG | - | chr3_2:84557357-84557376 | Msa0432400:CDS | 45.0% | |
| AATCCCATCATCAGACCCAT+TGG | + | chr3_2:84557363-84557382 | None:intergenic | 45.0% | |
| GCCCAAATTGATGGAGAACA+TGG | - | chr3_2:84557407-84557426 | Msa0432400:intron | 45.0% | |
| GAAACAGCTGCTATGGGATA+AGG | + | chr3_2:84557570-84557589 | None:intergenic | 45.0% | |
| GCCTATTTAGTCAATAGCGG+GGG | - | chr3_2:84557869-84557888 | Msa0432400:intron | 45.0% | |
| ! | ACCCCCGCTATTGACTAAAT+AGG | + | chr3_2:84557873-84557892 | None:intergenic | 45.0% |
| TCTCTGCTGAAGACATCCAA+TGG | + | chr3_2:84557916-84557935 | None:intergenic | 45.0% | |
| AGCAAGAATTTCGGCTGCTA+TGG | + | chr3_2:84557965-84557984 | None:intergenic | 45.0% | |
| GCCACGAACAGCAAGAATTT+CGG | + | chr3_2:84557974-84557993 | None:intergenic | 45.0% | |
| GCCACAATACTGTGCTGTAT+AGG | + | chr3_2:84558475-84558494 | None:intergenic | 45.0% | |
| ATGAGAACCAGCGAGTACAT+TGG | - | chr3_2:84558656-84558675 | Msa0432400:intron | 45.0% | |
| AGGAAAACCAATGTACTCGC+TGG | + | chr3_2:84558666-84558685 | None:intergenic | 45.0% | |
| ATAGCCATGCACCACCAATA+TGG | - | chr3_2:84558893-84558912 | Msa0432400:CDS | 45.0% | |
| !! | ACTAATAAAAAAAAAAAATA+GGG | + | chr3_2:84555865-84555884 | None:intergenic | 5.0% |
| !! | AACTAATAAAAAAAAAAAAT+AGG | + | chr3_2:84555866-84555885 | None:intergenic | 5.0% |
| GGGGATTGAGCGAATGATGA+GGG | + | chr3_2:84555639-84555658 | None:intergenic | 50.0% | |
| AGGGGATTGAGCGAATGATG+AGG | + | chr3_2:84555640-84555659 | None:intergenic | 50.0% | |
| TTCTTCTGCAGGTCTTCCGA+TGG | - | chr3_2:84555755-84555774 | Msa0432400:three_prime_UTR | 50.0% | |
| TCTTCTGCAGGTCTTCCGAT+GGG | - | chr3_2:84555756-84555775 | Msa0432400:three_prime_UTR | 50.0% | |
| GCCAAGTTCATCAAGGTTGG+GGG | - | chr3_2:84556437-84556456 | Msa0432400:intron | 50.0% | |
| CCAAGTTCATCAAGGTTGGG+GGG | - | chr3_2:84556438-84556457 | Msa0432400:intron | 50.0% | |
| GATGTTAGTGCCAGAAACCC+TGG | - | chr3_2:84557116-84557135 | Msa0432400:CDS | 50.0% | |
| ! | GTGCTGCCTGAATTTTGCCA+GGG | + | chr3_2:84557136-84557155 | None:intergenic | 50.0% |
| ! | AGTGCTGCCTGAATTTTGCC+AGG | + | chr3_2:84557137-84557156 | None:intergenic | 50.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr3_2:84557658-84557677 | None:intergenic | 50.0% | |
| CTGCTGAAGACATCCAATGG+CGG | + | chr3_2:84557913-84557932 | None:intergenic | 50.0% | |
| !! | GCCGAAATTCTTGCTGTTCG+TGG | - | chr3_2:84557970-84557989 | Msa0432400:intron | 50.0% |
| TAGTTGCTTCTTGCAGCACC+GGG | + | chr3_2:84558619-84558638 | None:intergenic | 50.0% | |
| CTAGTTGCTTCTTGCAGCAC+CGG | + | chr3_2:84558620-84558639 | None:intergenic | 50.0% | |
| CCCCCCAACCTTGATGAACT+TGG | + | chr3_2:84556441-84556460 | None:intergenic | 55.0% | |
| TTCAGCCATAACGTGCCTGC+AGG | - | chr3_2:84556934-84556953 | Msa0432400:intron | 55.0% | |
| TCAGCCATAACGTGCCTGCA+GGG | - | chr3_2:84556935-84556954 | Msa0432400:intron | 55.0% | |
| TTCGCTCAATCCCCTACCCC+TGG | - | chr3_2:84555645-84555664 | Msa0432400:three_prime_UTR | 60.0% | |
| TCGCTCAATCCCCTACCCCT+GGG | - | chr3_2:84555646-84555665 | Msa0432400:three_prime_UTR | 60.0% | |
| GAGTCCCTGCAGGCACGTTA+TGG | + | chr3_2:84556942-84556961 | None:intergenic | 60.0% | |
| AGACATCCAATGGCGGCTGC+CGG | + | chr3_2:84557906-84557925 | None:intergenic | 60.0% | |
| ! | AGCGGGGGTAGCAGAGCATC+CGG | - | chr3_2:84557884-84557903 | Msa0432400:intron | 65.0% |
| GAGCATCCGGCAGCCGCCAT+TGG | - | chr3_2:84557897-84557916 | Msa0432400:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 84555448 | 84559074 | 84555448 | ID=Msa0432400;Name=Msa0432400 |
| chr3_2 | mRNA | 84555448 | 84559074 | 84555448 | ID=Msa0432400-mRNA-1;Parent=Msa0432400;Name=Msa0432400-mRNA-1;_AED=0.13;_eAED=0.13;_QI=122|1|1|1|1|1|7|435|211 |
| chr3_2 | exon | 84555448 | 84555977 | 84555448 | ID=Msa0432400-mRNA-1:exon:23942;Parent=Msa0432400-mRNA-1 |
| chr3_2 | exon | 84557093 | 84557201 | 84557093 | ID=Msa0432400-mRNA-1:exon:23941;Parent=Msa0432400-mRNA-1 |
| chr3_2 | exon | 84557299 | 84557415 | 84557299 | ID=Msa0432400-mRNA-1:exon:23940;Parent=Msa0432400-mRNA-1 |
| chr3_2 | exon | 84557520 | 84557583 | 84557520 | ID=Msa0432400-mRNA-1:exon:23939;Parent=Msa0432400-mRNA-1 |
| chr3_2 | exon | 84557769 | 84557877 | 84557769 | ID=Msa0432400-mRNA-1:exon:23938;Parent=Msa0432400-mRNA-1 |
| chr3_2 | exon | 84558713 | 84558756 | 84558713 | ID=Msa0432400-mRNA-1:exon:23937;Parent=Msa0432400-mRNA-1 |
| chr3_2 | exon | 84558855 | 84559074 | 84558855 | ID=Msa0432400-mRNA-1:exon:23936;Parent=Msa0432400-mRNA-1 |
| chr3_2 | five_prime_UTR | 84558953 | 84559074 | 84558953 | ID=Msa0432400-mRNA-1:five_prime_utr;Parent=Msa0432400-mRNA-1 |
| chr3_2 | CDS | 84558855 | 84558952 | 84558855 | ID=Msa0432400-mRNA-1:cds;Parent=Msa0432400-mRNA-1 |
| chr3_2 | CDS | 84558713 | 84558756 | 84558713 | ID=Msa0432400-mRNA-1:cds;Parent=Msa0432400-mRNA-1 |
| chr3_2 | CDS | 84557769 | 84557877 | 84557769 | ID=Msa0432400-mRNA-1:cds;Parent=Msa0432400-mRNA-1 |
| chr3_2 | CDS | 84557520 | 84557583 | 84557520 | ID=Msa0432400-mRNA-1:cds;Parent=Msa0432400-mRNA-1 |
| chr3_2 | CDS | 84557299 | 84557415 | 84557299 | ID=Msa0432400-mRNA-1:cds;Parent=Msa0432400-mRNA-1 |
| chr3_2 | CDS | 84557093 | 84557201 | 84557093 | ID=Msa0432400-mRNA-1:cds;Parent=Msa0432400-mRNA-1 |
| chr3_2 | CDS | 84555883 | 84555977 | 84555883 | ID=Msa0432400-mRNA-1:cds;Parent=Msa0432400-mRNA-1 |
| chr3_2 | three_prime_UTR | 84555448 | 84555882 | 84555448 | ID=Msa0432400-mRNA-1:three_prime_utr;Parent=Msa0432400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
