Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521200 | XP_003603346.1 | 99.526 | 211 | 0 | 1 | 1 | 211 | 1 | 210 | 3.04e-148 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521200 | sp|Q8VY97|Y4213_ARATH | 74.286 | 175 | 43 | 1 | 33 | 207 | 29 | 201 | 9.10e-84 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521200 | G7JAF8 | 99.526 | 211 | 0 | 1 | 1 | 211 | 1 | 210 | 1.45e-148 | 421 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0432400 | Msa0521200 | 0.969625 | 2.130453e-130 | -8.615850e-47 |
| Msa0476830 | Msa0521200 | 0.987009 | 9.782110e-169 | -8.615850e-47 |
| Msa0521200 | Msa0538050 | -0.802204 | 6.269706e-49 | -8.615850e-47 |
| Msa0521200 | Msa0829120 | 0.980801 | 4.587486e-151 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521200 | MtrunA17_Chr3g0137401 | 99.526 | 211 | 0 | 1 | 1 | 211 | 1 | 210 | 2.80e-152 | 421 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521200 | AT2G25310.1 | 72.637 | 201 | 51 | 2 | 10 | 210 | 13 | 209 | 4.90e-92 | 268 |
| Msa0521200 | AT4G32130.1 | 74.286 | 175 | 43 | 1 | 33 | 207 | 29 | 201 | 9.25e-85 | 249 |
Find 69 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGTATAATTTCTTTATT+TGG | 0.158836 | 3_4:-73844394 | Msa0521200:three_prime_UTR |
| TAATACTGTTCCTCCTTTAA+TGG | 0.168757 | 3_4:+73846119 | None:intergenic |
| ACCCATGTTCTCCATCAATT+TGG | 0.172914 | 3_4:+73845907 | None:intergenic |
| GTCCTCATGCCTAAATTATT+TGG | 0.186235 | 3_4:-73844372 | Msa0521200:three_prime_UTR |
| TGAGCACGTTTCATTTCTTC+TGG | 0.232081 | 3_4:+73844782 | None:intergenic |
| TCCGATGGGTACACTATTTA+TGG | 0.232266 | 3_4:-73847546 | Msa0521200:CDS |
| AATGTCAAAGTTATACTTAA+TGG | 0.264904 | 3_4:-73846629 | Msa0521200:CDS |
| ATTTGGTTTATGATCTGTTT+TGG | 0.300143 | 3_4:-73844355 | Msa0521200:three_prime_UTR |
| TTTCCTTATGCCCAAATTGA+TGG | 0.308008 | 3_4:-73845918 | Msa0521200:CDS |
| GATCATAAACCAAATAATTT+AGG | 0.315950 | 3_4:+73844363 | None:intergenic |
| CTCTGAATATTGGCAATCTA+TGG | 0.334167 | 3_4:-73847765 | Msa0521200:exon |
| AATGTGAAACATACATGAAT+AGG | 0.340448 | 3_4:-73844507 | Msa0521200:three_prime_UTR |
| CAGAAACCCTGGCAAAATTC+AGG | 0.352622 | 3_4:-73846189 | Msa0521200:CDS |
| CCCATGTTCTCCATCAATTT+GGG | 0.365935 | 3_4:+73845908 | None:intergenic |
| AGGCAGCACTGACAGAAAAT+AGG | 0.378833 | 3_4:-73846169 | Msa0521200:CDS |
| TCTCCATCAATTTGGGCATA+AGG | 0.387908 | 3_4:+73845915 | None:intergenic |
| ATGCACCACCAATATGGATA+TGG | 0.393207 | 3_4:-73844430 | Msa0521200:three_prime_UTR |
| ACAAGCAACCATATCCATAT+TGG | 0.425328 | 3_4:+73844422 | None:intergenic |
| ATAGCCATGCACCACCAATA+TGG | 0.426630 | 3_4:-73844436 | Msa0521200:three_prime_UTR |
| GAGTCCCTGCAGGCACGTTA+TGG | 0.435724 | 3_4:+73846376 | None:intergenic |
| CTAGTTGCTTCTTGCAGCAC+CGG | 0.438332 | 3_4:+73844712 | None:intergenic |
| TTCAGCCATAACGTGCCTGC+AGG | 0.459980 | 3_4:-73846381 | Msa0521200:intron |
| TTCGCTCAATCCCCTACCCC+TGG | 0.471489 | 3_4:-73847671 | Msa0521200:CDS |
| TTAATTGAAGTGGCTGCAAA+AGG | 0.475291 | 3_4:-73846351 | Msa0521200:CDS |
| TTCTTCTGCAGGTCTTCCGA+TGG | 0.484478 | 3_4:-73847561 | Msa0521200:intron |
| CAAGAAGAAATGAGAAATCA+AGG | 0.494262 | 3_4:-73844761 | Msa0521200:CDS |
| AAAGGAGGAACAGTATTATG+AGG | 0.495382 | 3_4:-73846114 | Msa0521200:intron |
| AGAAAGCAAGTGCAGTTACA+TGG | 0.495922 | 3_4:+73844481 | None:intergenic |
| TTTACAAGCATTAGCAGGCA+TGG | 0.497892 | 3_4:+73844297 | None:intergenic |
| GGTAACAAGCTTGCTAAAGA+TGG | 0.499603 | 3_4:+73844734 | None:intergenic |
| TATATCTTCAGCTTCTGCTC+AGG | 0.500434 | 3_4:+73844646 | None:intergenic |
| GAAATTGATACCCAGGGGTA+GGG | 0.501096 | 3_4:+73847660 | None:intergenic |
| GCCCAAATTGATGGAGAACA+TGG | 0.506778 | 3_4:-73845909 | Msa0521200:CDS |
| TCCATTGTGAAAAGTCCAAT+GGG | 0.507206 | 3_4:-73845971 | Msa0521200:CDS |
| TACAATGAGAAATATCCATC+AGG | 0.508843 | 3_4:+73846581 | None:intergenic |
| GGGGATTGAGCGAATGATGA+GGG | 0.521949 | 3_4:+73847680 | None:intergenic |
| TGAAAACACACTGATCTGTT+CGG | 0.526487 | 3_4:+73847791 | None:intergenic |
| AAGTCCAATGGGTCTGATGA+TGG | 0.529960 | 3_4:-73845960 | Msa0521200:CDS |
| GTCCATTGTGAAAAGTCCAA+TGG | 0.530848 | 3_4:-73845972 | Msa0521200:CDS |
| AAATTGATACCCAGGGGTAG+GGG | 0.531505 | 3_4:+73847661 | None:intergenic |
| AATCCCATCATCAGACCCAT+TGG | 0.537133 | 3_4:+73845956 | None:intergenic |
| AGTCCAATGGGTCTGATGAT+GGG | 0.541406 | 3_4:-73845959 | Msa0521200:CDS |
| ACAATGGACATAATAGAGAA+TGG | 0.546124 | 3_4:+73845986 | None:intergenic |
| GTATATTGCGTGCGCAAAAG+CGG | 0.547989 | 3_4:-73847850 | Msa0521200:five_prime_UTR |
| GATGTTAGTGCCAGAAACCC+TGG | 0.551828 | 3_4:-73846200 | Msa0521200:CDS |
| AGGGACTCATTTAATTGAAG+TGG | 0.553198 | 3_4:-73846361 | Msa0521200:CDS |
| CAGCACTGACAGAAAATAGG+AGG | 0.557041 | 3_4:-73846166 | Msa0521200:CDS |
| TCGCTCAATCCCCTACCCCT+GGG | 0.564664 | 3_4:-73847670 | Msa0521200:intron |
| TGAAATTGATACCCAGGGGT+AGG | 0.565785 | 3_4:+73847659 | None:intergenic |
| AGCAACCATATCCATATTGG+TGG | 0.567127 | 3_4:+73844425 | None:intergenic |
| TAGTTGCTTCTTGCAGCACC+GGG | 0.567421 | 3_4:+73844713 | None:intergenic |
| TCAATTAAATGAGTCCCTGC+AGG | 0.577390 | 3_4:+73846366 | None:intergenic |
| AGGGGATTGAGCGAATGATG+AGG | 0.577465 | 3_4:+73847679 | None:intergenic |
| TCTTTAGCAAGCTTGTTACC+CGG | 0.579704 | 3_4:-73844731 | Msa0521200:CDS |
| ATGAGAACCAGCGAGTACAT+TGG | 0.587034 | 3_4:-73844673 | Msa0521200:three_prime_UTR |
| AGGAAAACCAATGTACTCGC+TGG | 0.587347 | 3_4:+73844666 | None:intergenic |
| AATAACAAAATTCTCTATCA+CGG | 0.589670 | 3_4:+73844616 | None:intergenic |
| AAGAAAGAGTGATTTCGTGA+AGG | 0.590259 | 3_4:+73847739 | None:intergenic |
| AACCAAATAATTTAGGCATG+AGG | 0.590752 | 3_4:+73844370 | None:intergenic |
| TCTTCTGCAGGTCTTCCGAT+GGG | 0.594131 | 3_4:-73847560 | Msa0521200:intron |
| ATATCCATATTGGTGGTGCA+TGG | 0.596001 | 3_4:+73844432 | None:intergenic |
| CACTGACAGAAAATAGGAGG+GGG | 0.615655 | 3_4:-73846163 | Msa0521200:CDS |
| GTCAAAGTTATACTTAATGG+TGG | 0.622746 | 3_4:-73846626 | Msa0521200:CDS |
| TCAGCCATAACGTGCCTGCA+GGG | 0.625157 | 3_4:-73846380 | Msa0521200:intron |
| AGCACTGACAGAAAATAGGA+GGG | 0.637222 | 3_4:-73846165 | Msa0521200:CDS |
| ACCATAAATAGTGTACCCAT+CGG | 0.641346 | 3_4:+73847545 | None:intergenic |
| CCCAAATTGATGGAGAACAT+GGG | 0.655293 | 3_4:-73845908 | Msa0521200:intron |
| GCACTGACAGAAAATAGGAG+GGG | 0.661192 | 3_4:-73846164 | Msa0521200:CDS |
| ATCTGTGATTGTATACGCTG+TGG | 0.672240 | 3_4:-73844573 | Msa0521200:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAATCAAATATAAAC+TGG | + | chr3_4:73844954-73844973 | None:intergenic | 10.0% |
| !!! | TATGAAATATTTAGAATTTT+AGG | - | chr3_4:73844973-73844992 | Msa0521200:intron | 10.0% |
| !! | AAGTAAATATAGAATTAAAT+AGG | + | chr3_4:73845659-73845678 | None:intergenic | 10.0% |
| !! | AAATTTAAATTCAAGAAAAT+GGG | + | chr3_4:73846859-73846878 | None:intergenic | 10.0% |
| !! | AAAATTTAAATTCAAGAAAA+TGG | + | chr3_4:73846860-73846879 | None:intergenic | 10.0% |
| !!! | TGAATTTAAATTTTAATGTT+CGG | - | chr3_4:73846866-73846885 | Msa0521200:intron | 10.0% |
| !! | ATCGAAAAATTGAAAAATTA+GGG | + | chr3_4:73844524-73844543 | None:intergenic | 15.0% |
| !! | AATCGAAAAATTGAAAAATT+AGG | + | chr3_4:73844525-73844544 | None:intergenic | 15.0% |
| !! | TATTAAATTCGTTAAAATCA+AGG | + | chr3_4:73844563-73844582 | None:intergenic | 15.0% |
| !!! | AATTACAAAAATAGCATTTT+TGG | - | chr3_4:73845144-73845163 | Msa0521200:intron | 15.0% |
| !! | GAAAACAAAAAAAAAATTAG+GGG | + | chr3_4:73845873-73845892 | None:intergenic | 15.0% |
| !! | GGAAAACAAAAAAAAAATTA+GGG | + | chr3_4:73845874-73845893 | None:intergenic | 15.0% |
| !! | AGGAAAACAAAAAAAAAATT+AGG | + | chr3_4:73845875-73845894 | None:intergenic | 15.0% |
| !!! | TGAATTTGAATTTTCTTATA+GGG | - | chr3_4:73847602-73847621 | Msa0521200:intron | 15.0% |
| !! | CATTGTATAATTTCTTTATT+TGG | - | chr3_4:73847752-73847771 | Msa0521200:exon | 15.0% |
| !! | ATTGAAAAATTAGGGTTTAA+GGG | + | chr3_4:73844516-73844535 | None:intergenic | 20.0% |
| !! | AATTGAAAAATTAGGGTTTA+AGG | + | chr3_4:73844517-73844536 | None:intergenic | 20.0% |
| !! | ATGAATCTTATAATGATGAA+AGG | + | chr3_4:73844654-73844673 | None:intergenic | 20.0% |
| !!! | TTAAACATCAAACATTGATT+GGG | + | chr3_4:73844725-73844744 | None:intergenic | 20.0% |
| !! | ATTAAACATCAAACATTGAT+TGG | + | chr3_4:73844726-73844745 | None:intergenic | 20.0% |
| !! | AATGTCAAAGTTATACTTAA+TGG | - | chr3_4:73845517-73845536 | Msa0521200:intron | 20.0% |
| !! | GAAATAAAGTTGTAAATCAA+AGG | + | chr3_4:73845592-73845611 | None:intergenic | 20.0% |
| !!! | TAATTTGCATGAAAACTTTT+TGG | - | chr3_4:73845622-73845641 | Msa0521200:intron | 20.0% |
| !!! | AATTTGCATGAAAACTTTTT+GGG | - | chr3_4:73845623-73845642 | Msa0521200:intron | 20.0% |
| !!! | TACTTATTTTGTTTTGCTTT+TGG | - | chr3_4:73845674-73845693 | Msa0521200:intron | 20.0% |
| !!! | ACTTATTTTGTTTTGCTTTT+GGG | - | chr3_4:73845675-73845694 | Msa0521200:intron | 20.0% |
| !!! | AAGTTATAGTTGATTGATTT+TGG | - | chr3_4:73845698-73845717 | Msa0521200:intron | 20.0% |
| !! | ACATTCAGATAATAATCTTA+AGG | + | chr3_4:73846102-73846121 | None:intergenic | 20.0% |
| !! | AAATGAAAGAAGTTTATAGA+TGG | + | chr3_4:73846279-73846298 | None:intergenic | 20.0% |
| !!! | TCAAAAATGTAAAAGTATAC+TGG | + | chr3_4:73847113-73847132 | None:intergenic | 20.0% |
| !! | AATAACAAAATTCTCTATCA+CGG | + | chr3_4:73847533-73847552 | None:intergenic | 20.0% |
| !!! | GAATTTTGTTATTAACAAGT+TGG | - | chr3_4:73847540-73847559 | Msa0521200:CDS | 20.0% |
| !!! | CTGAATTTGAATTTTCTTAT+AGG | - | chr3_4:73847601-73847620 | Msa0521200:intron | 20.0% |
| !! | GATCATAAACCAAATAATTT+AGG | + | chr3_4:73847786-73847805 | None:intergenic | 20.0% |
| !!! | TTTCAATTTTTCGATTGCAT+CGG | - | chr3_4:73844529-73844548 | Msa0521200:three_prime_UTR | 25.0% |
| ! | AATTTAATAACTTCTTCTGC+AGG | - | chr3_4:73844574-73844593 | Msa0521200:three_prime_UTR | 25.0% |
| ! | ATCTTATAATGATGAAAGGT+GGG | + | chr3_4:73844650-73844669 | None:intergenic | 25.0% |
| ! | AATCTTATAATGATGAAAGG+TGG | + | chr3_4:73844651-73844670 | None:intergenic | 25.0% |
| !! | TTTTAGGCTAAAACAATGTT+TGG | - | chr3_4:73844989-73845008 | Msa0521200:intron | 25.0% |
| ! | TAAAAACAAAATAGTGCACA+AGG | + | chr3_4:73845059-73845078 | None:intergenic | 25.0% |
| !!! | AAATAGCATTTTTGGTTTCA+TGG | - | chr3_4:73845152-73845171 | Msa0521200:intron | 25.0% |
| !! | CCTATATAACTCTTTGAAAA+TGG | + | chr3_4:73845183-73845202 | None:intergenic | 25.0% |
| !! | CCATTTTCAAAGAGTTATAT+AGG | - | chr3_4:73845180-73845199 | Msa0521200:intron | 25.0% |
| !! | CATGGATTTTCTATAAATGT+TGG | - | chr3_4:73845401-73845420 | Msa0521200:intron | 25.0% |
| !! | TATAAATGTTGGTTGTATGA+TGG | - | chr3_4:73845412-73845431 | Msa0521200:intron | 25.0% |
| !! | ATTTGCATGAAAACTTTTTG+GGG | - | chr3_4:73845624-73845643 | Msa0521200:intron | 25.0% |
| ! | TTTAATACATGAGCAAACAT+AGG | + | chr3_4:73845895-73845914 | None:intergenic | 25.0% |
| ! | TTATTGTGTCCATTAACAAA+AGG | - | chr3_4:73845915-73845934 | Msa0521200:CDS | 25.0% |
| ! | GATAATAATCTTAAGGAATG+TGG | + | chr3_4:73846095-73846114 | None:intergenic | 25.0% |
| !!! | ATCTTGTTTTTCTACAGATT+AGG | - | chr3_4:73846134-73846153 | Msa0521200:CDS | 25.0% |
| !!! | TCTTGTTTTTCTACAGATTA+GGG | - | chr3_4:73846135-73846154 | Msa0521200:CDS | 25.0% |
| !!! | GTTTATAGATGGATTTTAGA+AGG | + | chr3_4:73846268-73846287 | None:intergenic | 25.0% |
| ! | ACAAATAAGAAAAACTCGAA+AGG | + | chr3_4:73846302-73846321 | None:intergenic | 25.0% |
| !!! | TTTCTTATTTGTTGTCTATG+TGG | - | chr3_4:73846310-73846329 | Msa0521200:intron | 25.0% |
| ! | AAATGATTACTCATTACCTT+AGG | - | chr3_4:73846355-73846374 | Msa0521200:CDS | 25.0% |
| ! | GTTTCATAAAATTCTACCTA+AGG | + | chr3_4:73846374-73846393 | None:intergenic | 25.0% |
| !!! | ATTAGGGAGAGAATTTTTTT+TGG | + | chr3_4:73846530-73846549 | None:intergenic | 25.0% |
| !! | TCATTAATAAGAGCACATTA+GGG | + | chr3_4:73846546-73846565 | None:intergenic | 25.0% |
| ! | GTTAAAAAATCACAATCATG+AGG | - | chr3_4:73846635-73846654 | Msa0521200:CDS | 25.0% |
| ! | GCAAAACATAGAAGAAAATA+CGG | + | chr3_4:73847036-73847055 | None:intergenic | 25.0% |
| ! | TATGTATTGCAAACTTCTAA+GGG | + | chr3_4:73847144-73847163 | None:intergenic | 25.0% |
| ! | AATGTGAAACATACATGAAT+AGG | - | chr3_4:73847639-73847658 | Msa0521200:intron | 25.0% |
| !!! | ATTTGGTTTATGATCTGTTT+TGG | - | chr3_4:73847791-73847810 | Msa0521200:five_prime_UTR | 25.0% |
| ! | GTTTTCACAACTCTGAATAT+TGG | - | chr3_4:73844371-73844390 | Msa0521200:three_prime_UTR | 30.0% |
| ATTGATTATTGCATCCTTGA+TGG | - | chr3_4:73844841-73844860 | Msa0521200:intron | 30.0% | |
| TTGATTATTGCATCCTTGAT+GGG | - | chr3_4:73844842-73844861 | Msa0521200:intron | 30.0% | |
| ! | ACTGATAATGCATTAAAGCA+TGG | + | chr3_4:73845035-73845054 | None:intergenic | 30.0% |
| ! | CAACAAACTAAGAGTATGTT+TGG | - | chr3_4:73845091-73845110 | Msa0521200:intron | 30.0% |
| AGTTAATGATTTAGCTATCC+AGG | - | chr3_4:73845293-73845312 | Msa0521200:intron | 30.0% | |
| ! | ATCTATTTTGTGAGGATACA+TGG | - | chr3_4:73845383-73845402 | Msa0521200:intron | 30.0% |
| !! | TTGACATTTGAAACTTTTGC+AGG | + | chr3_4:73845505-73845524 | None:intergenic | 30.0% |
| GTCAAAGTTATACTTAATGG+TGG | - | chr3_4:73845520-73845539 | Msa0521200:intron | 30.0% | |
| TACAATGAGAAATATCCATC+AGG | + | chr3_4:73845568-73845587 | None:intergenic | 30.0% | |
| ! | TTTTCATGCAAATTATGAGC+AGG | + | chr3_4:73845617-73845636 | None:intergenic | 30.0% |
| !!! | GTTTGTTTTAGAGCCATTAA+AGG | - | chr3_4:73846014-73846033 | Msa0521200:intron | 30.0% |
| TAATACTGTTCCTCCTTTAA+TGG | + | chr3_4:73846030-73846049 | None:intergenic | 30.0% | |
| TAATCTTAAGGAATGTGGAA+AGG | + | chr3_4:73846090-73846109 | None:intergenic | 30.0% | |
| ACAATGGACATAATAGAGAA+TGG | + | chr3_4:73846163-73846182 | None:intergenic | 30.0% | |
| !!! | AGAGAATTTTTTTTGGAGCA+TGG | + | chr3_4:73846523-73846542 | None:intergenic | 30.0% |
| ! | CTCATTAATAAGAGCACATT+AGG | + | chr3_4:73846547-73846566 | None:intergenic | 30.0% |
| ! | GTCCTATTTGAAATACTTTG+TGG | - | chr3_4:73846566-73846585 | Msa0521200:intron | 30.0% |
| ! | GACCACAAAGTATTTCAAAT+AGG | + | chr3_4:73846571-73846590 | None:intergenic | 30.0% |
| ATAAACAAAGCACAGCTTAT+GGG | + | chr3_4:73846595-73846614 | None:intergenic | 30.0% | |
| AATAAACAAAGCACAGCTTA+TGG | + | chr3_4:73846596-73846615 | None:intergenic | 30.0% | |
| TAAGCCTATTTAGTCAATAG+CGG | - | chr3_4:73846683-73846702 | Msa0521200:intron | 30.0% | |
| TAACAAACATGTGAGAAACA+AGG | + | chr3_4:73846983-73847002 | None:intergenic | 30.0% | |
| GTATGTATTGCAAACTTCTA+AGG | + | chr3_4:73847145-73847164 | None:intergenic | 30.0% | |
| CATTTCATCACACGAAATTA+TGG | + | chr3_4:73847216-73847235 | None:intergenic | 30.0% | |
| CATAATTTCGTGTGATGAAA+TGG | - | chr3_4:73847214-73847233 | Msa0521200:intron | 30.0% | |
| CTCATATCTTGAATGTATTG+TGG | - | chr3_4:73847331-73847350 | Msa0521200:intron | 30.0% | |
| CAAGAAGAAATGAGAAATCA+AGG | - | chr3_4:73847385-73847404 | Msa0521200:intron | 30.0% | |
| AACCAAATAATTTAGGCATG+AGG | + | chr3_4:73847779-73847798 | None:intergenic | 30.0% | |
| !!! | CATTTTTTACAAGCATTAGC+AGG | + | chr3_4:73847857-73847876 | None:intergenic | 30.0% |
| TGAAAACACACTGATCTGTT+CGG | + | chr3_4:73844358-73844377 | None:intergenic | 35.0% | |
| CTCTGAATATTGGCAATCTA+TGG | - | chr3_4:73844381-73844400 | Msa0521200:three_prime_UTR | 35.0% | |
| AAGAAAGAGTGATTTCGTGA+AGG | + | chr3_4:73844410-73844429 | None:intergenic | 35.0% | |
| GATATGAAATTGATACCCAG+GGG | + | chr3_4:73844494-73844513 | None:intergenic | 35.0% | |
| GGATATGAAATTGATACCCA+GGG | + | chr3_4:73844495-73844514 | None:intergenic | 35.0% | |
| ACCATAAATAGTGTACCCAT+CGG | + | chr3_4:73844604-73844623 | None:intergenic | 35.0% | |
| !! | TCATAGTACATGATTTGCTG+TGG | - | chr3_4:73844811-73844830 | Msa0521200:intron | 35.0% |
| CAAGGATGCAATAATCAATC+AGG | + | chr3_4:73844840-73844859 | None:intergenic | 35.0% | |
| ACTGGCAAAAACTTTAAACC+AGG | + | chr3_4:73844936-73844955 | None:intergenic | 35.0% | |
| ! | CCTTGATCAGATTTTTCTAG+CGG | - | chr3_4:73845235-73845254 | Msa0521200:intron | 35.0% |
| !! | TAGTTTTGCCAAGTTCATCA+AGG | - | chr3_4:73845261-73845280 | Msa0521200:intron | 35.0% |
| GTAGTGTGCATTTGTGAATA+CGG | + | chr3_4:73845351-73845370 | None:intergenic | 35.0% | |
| ACAAAATAGATGCACAACGA+CGG | + | chr3_4:73845374-73845393 | None:intergenic | 35.0% | |
| ! | ATGGTATCACTGGATCTTTT+TGG | - | chr3_4:73845450-73845469 | Msa0521200:intron | 35.0% |
| ! | GTCAAAGAGTTTCTTTTCTG+AGG | - | chr3_4:73845542-73845561 | Msa0521200:intron | 35.0% |
| AGGGACTCATTTAATTGAAG+TGG | - | chr3_4:73845785-73845804 | Msa0521200:intron | 35.0% | |
| TTAATTGAAGTGGCTGCAAA+AGG | - | chr3_4:73845795-73845814 | Msa0521200:intron | 35.0% | |
| TTTCCAAATTGAGTACTCAC+TGG | + | chr3_4:73845834-73845853 | None:intergenic | 35.0% | |
| ! | CAACTCGTACCTTTTGTTAA+TGG | + | chr3_4:73845927-73845946 | None:intergenic | 35.0% |
| !!! | TGTTTTAGAGCCATTAAAGG+AGG | - | chr3_4:73846017-73846036 | Msa0521200:intron | 35.0% |
| AAAGGAGGAACAGTATTATG+AGG | - | chr3_4:73846032-73846051 | Msa0521200:intron | 35.0% | |
| TCCATTGTGAAAAGTCCAAT+GGG | - | chr3_4:73846175-73846194 | Msa0521200:CDS | 35.0% | |
| TTTCCTTATGCCCAAATTGA+TGG | - | chr3_4:73846228-73846247 | Msa0521200:intron | 35.0% | |
| AAAACAGAAACAGCTGCTAT+GGG | + | chr3_4:73846406-73846425 | None:intergenic | 35.0% | |
| TAAACAAAGCACAGCTTATG+GGG | + | chr3_4:73846594-73846613 | None:intergenic | 35.0% | |
| ! | TATGCATCTTGTGTGCTTTT+GGG | - | chr3_4:73846658-73846677 | Msa0521200:CDS | 35.0% |
| AAGCCTATTTAGTCAATAGC+GGG | - | chr3_4:73846684-73846703 | Msa0521200:intron | 35.0% | |
| ! | GACTTCTATGTTTCGAGTAT+CGG | - | chr3_4:73847067-73847086 | Msa0521200:intron | 35.0% |
| AAGTATACTGGACATAGAAG+AGG | + | chr3_4:73847101-73847120 | None:intergenic | 35.0% | |
| TCATACTGTTTCAGAGATGA+TGG | + | chr3_4:73847243-73847262 | None:intergenic | 35.0% | |
| !! | CATCTCTGAAACAGTATGAA+TGG | - | chr3_4:73847244-73847263 | Msa0521200:intron | 35.0% |
| ACAAGCAACCATATCCATAT+TGG | + | chr3_4:73847727-73847746 | None:intergenic | 35.0% | |
| GTCCTCATGCCTAAATTATT+TGG | - | chr3_4:73847774-73847793 | Msa0521200:five_prime_UTR | 35.0% | |
| GGGATATGAAATTGATACCC+AGG | + | chr3_4:73844496-73844515 | None:intergenic | 40.0% | |
| TCCGATGGGTACACTATTTA+TGG | - | chr3_4:73844600-73844619 | Msa0521200:three_prime_UTR | 40.0% | |
| TGAAAGGTGGGAACTTACTA+GGG | + | chr3_4:73844638-73844657 | None:intergenic | 40.0% | |
| ATGAAAGGTGGGAACTTACT+AGG | + | chr3_4:73844639-73844658 | None:intergenic | 40.0% | |
| TGAACTTCGATCAGTAAACG+AGG | - | chr3_4:73844782-73844801 | Msa0521200:CDS | 40.0% | |
| TCCTTGATGGGACTGTTAAT+CGG | - | chr3_4:73844854-73844873 | Msa0521200:intron | 40.0% | |
| CTTTCAAGCACAGTCAATTC+AGG | + | chr3_4:73844910-73844929 | None:intergenic | 40.0% | |
| CCGCTAGAAAAATCTGATCA+AGG | + | chr3_4:73845238-73845257 | None:intergenic | 40.0% | |
| TTTGCCAAGTTCATCAAGGT+TGG | - | chr3_4:73845265-73845284 | Msa0521200:intron | 40.0% | |
| TTGCCAAGTTCATCAAGGTT+GGG | - | chr3_4:73845266-73845285 | Msa0521200:intron | 40.0% | |
| AACTTTGACAGTTCAACTCC+TGG | + | chr3_4:73845314-73845333 | None:intergenic | 40.0% | |
| CAAAATAGATGCACAACGAC+GGG | + | chr3_4:73845373-73845392 | None:intergenic | 40.0% | |
| ! | CGTTGTGCATCTATTTTGTG+AGG | - | chr3_4:73845375-73845394 | Msa0521200:intron | 40.0% |
| ATGGTATCGCTGGAGTATAA+TGG | - | chr3_4:73845431-73845450 | Msa0521200:intron | 40.0% | |
| CTGGAGTATAATGGTATCAC+TGG | - | chr3_4:73845440-73845459 | Msa0521200:intron | 40.0% | |
| !! | TATCACTGGATCTTTTTGGC+AGG | - | chr3_4:73845454-73845473 | Msa0521200:intron | 40.0% |
| !! | TGGATCTTTTTGGCAGGTTT+TGG | - | chr3_4:73845460-73845479 | Msa0521200:intron | 40.0% |
| AGCATTCACGTTAAGGAACT+TGG | + | chr3_4:73845745-73845764 | None:intergenic | 40.0% | |
| TCAATTAAATGAGTCCCTGC+AGG | + | chr3_4:73845783-73845802 | None:intergenic | 40.0% | |
| TCTCCAGTGAGTACTCAATT+TGG | - | chr3_4:73845828-73845847 | Msa0521200:intron | 40.0% | |
| !! | AGCACTGACAGAAAATAGGA+GGG | - | chr3_4:73845981-73846000 | Msa0521200:CDS | 40.0% |
| GAGGAACAGTATTATGAGGT+TGG | - | chr3_4:73846036-73846055 | Msa0521200:intron | 40.0% | |
| ATGTGGAAAGGAACACAAAC+AGG | + | chr3_4:73846078-73846097 | None:intergenic | 40.0% | |
| GTCCATTGTGAAAAGTCCAA+TGG | - | chr3_4:73846174-73846193 | Msa0521200:CDS | 40.0% | |
| ! | ACCCATTGGACTTTTCACAA+TGG | + | chr3_4:73846179-73846198 | None:intergenic | 40.0% |
| TCTCCATCAATTTGGGCATA+AGG | + | chr3_4:73846234-73846253 | None:intergenic | 40.0% | |
| CCCATGTTCTCCATCAATTT+GGG | + | chr3_4:73846241-73846260 | None:intergenic | 40.0% | |
| CCCAAATTGATGGAGAACAT+GGG | - | chr3_4:73846238-73846257 | Msa0521200:intron | 40.0% | |
| ACCCATGTTCTCCATCAATT+TGG | + | chr3_4:73846242-73846261 | None:intergenic | 40.0% | |
| CAAAACAGAAACAGCTGCTA+TGG | + | chr3_4:73846407-73846426 | None:intergenic | 40.0% | |
| GAGAGAGGAAGAAAGATAAG+AGG | + | chr3_4:73846475-73846494 | None:intergenic | 40.0% | |
| !!! | TTTTTTTGGAGCATGGAGAG+AGG | + | chr3_4:73846516-73846535 | None:intergenic | 40.0% |
| AAACAAAGCACAGCTTATGG+GGG | + | chr3_4:73846593-73846612 | None:intergenic | 40.0% | |
| ! | GTATGCATCTTGTGTGCTTT+TGG | - | chr3_4:73846657-73846676 | Msa0521200:CDS | 40.0% |
| AGCCTATTTAGTCAATAGCG+GGG | - | chr3_4:73846685-73846704 | Msa0521200:intron | 40.0% | |
| ! | TGAGCATTTGAGTTTCACAG+AGG | + | chr3_4:73846813-73846832 | None:intergenic | 40.0% |
| ACTCGAAACATAGAAGTCAC+AGG | + | chr3_4:73847065-73847084 | None:intergenic | 40.0% | |
| ACCTATACAGCACAGTATTG+TGG | - | chr3_4:73847288-73847307 | Msa0521200:intron | 40.0% | |
| TGAGCACGTTTCATTTCTTC+TGG | + | chr3_4:73847367-73847386 | None:intergenic | 40.0% | |
| !! | GGTAACAAGCTTGCTAAAGA+TGG | + | chr3_4:73847415-73847434 | None:intergenic | 40.0% |
| !! | TCTTTAGCAAGCTTGTTACC+CGG | - | chr3_4:73847415-73847434 | Msa0521200:intron | 40.0% |
| TATATCTTCAGCTTCTGCTC+AGG | + | chr3_4:73847503-73847522 | None:intergenic | 40.0% | |
| ATCTGTGATTGTATACGCTG+TGG | - | chr3_4:73847573-73847592 | Msa0521200:intron | 40.0% | |
| AGAAAGCAAGTGCAGTTACA+TGG | + | chr3_4:73847668-73847687 | None:intergenic | 40.0% | |
| !! | ATATCCATATTGGTGGTGCA+TGG | + | chr3_4:73847717-73847736 | None:intergenic | 40.0% |
| ATGCACCACCAATATGGATA+TGG | - | chr3_4:73847716-73847735 | Msa0521200:CDS | 40.0% | |
| AGCAACCATATCCATATTGG+TGG | + | chr3_4:73847724-73847743 | None:intergenic | 40.0% | |
| !!! | ATGATCTGTTTTGGCTGCAT+TGG | - | chr3_4:73847800-73847819 | Msa0521200:five_prime_UTR | 40.0% |
| TTTACAAGCATTAGCAGGCA+TGG | + | chr3_4:73847852-73847871 | None:intergenic | 40.0% | |
| GTATATTGCGTGCGCAAAAG+CGG | - | chr3_4:73844296-73844315 | Msa0521200:three_prime_UTR | 45.0% | |
| AAATTGATACCCAGGGGTAG+GGG | + | chr3_4:73844488-73844507 | None:intergenic | 45.0% | |
| GAAATTGATACCCAGGGGTA+GGG | + | chr3_4:73844489-73844508 | None:intergenic | 45.0% | |
| TGAAATTGATACCCAGGGGT+AGG | + | chr3_4:73844490-73844509 | None:intergenic | 45.0% | |
| ACCGATTAACAGTCCCATCA+AGG | + | chr3_4:73844858-73844877 | None:intergenic | 45.0% | |
| GACTGTGCTTGAAAGTTACC+TGG | - | chr3_4:73844915-73844934 | Msa0521200:intron | 45.0% | |
| TGCCAAGTTCATCAAGGTTG+GGG | - | chr3_4:73845267-73845286 | Msa0521200:intron | 45.0% | |
| TGGTTGTATGATGGTATCGC+TGG | - | chr3_4:73845421-73845440 | Msa0521200:intron | 45.0% | |
| !!! | GTTTCTTTTCTGAGGCCTGA+TGG | - | chr3_4:73845550-73845569 | Msa0521200:intron | 45.0% |
| !! | GGCTGAAAGCATTCACGTTA+AGG | + | chr3_4:73845752-73845771 | None:intergenic | 45.0% |
| ! | CTGAATTTTGCCAGGGTTTC+TGG | + | chr3_4:73845959-73845978 | None:intergenic | 45.0% |
| CAGAAACCCTGGCAAAATTC+AGG | - | chr3_4:73845957-73845976 | Msa0521200:CDS | 45.0% | |
| !! | AGGCAGCACTGACAGAAAAT+AGG | - | chr3_4:73845977-73845996 | Msa0521200:CDS | 45.0% |
| !! | CAGCACTGACAGAAAATAGG+AGG | - | chr3_4:73845980-73845999 | Msa0521200:CDS | 45.0% |
| ! | GCACTGACAGAAAATAGGAG+GGG | - | chr3_4:73845982-73846001 | Msa0521200:CDS | 45.0% |
| CACTGACAGAAAATAGGAGG+GGG | - | chr3_4:73845983-73846002 | Msa0521200:CDS | 45.0% | |
| AAGTCCAATGGGTCTGATGA+TGG | - | chr3_4:73846186-73846205 | Msa0521200:CDS | 45.0% | |
| AGTCCAATGGGTCTGATGAT+GGG | - | chr3_4:73846187-73846206 | Msa0521200:CDS | 45.0% | |
| AATCCCATCATCAGACCCAT+TGG | + | chr3_4:73846193-73846212 | None:intergenic | 45.0% | |
| GCCCAAATTGATGGAGAACA+TGG | - | chr3_4:73846237-73846256 | Msa0521200:intron | 45.0% | |
| GAAACAGCTGCTATGGGATA+AGG | + | chr3_4:73846400-73846419 | None:intergenic | 45.0% | |
| GCCTATTTAGTCAATAGCGG+GGG | - | chr3_4:73846686-73846705 | Msa0521200:intron | 45.0% | |
| ! | ACCCCCGCTATTGACTAAAT+AGG | + | chr3_4:73846690-73846709 | None:intergenic | 45.0% |
| TCTCTGCTGAAGACATCCAA+TGG | + | chr3_4:73846733-73846752 | None:intergenic | 45.0% | |
| AGCAAGAATTTCGGCTGCTA+TGG | + | chr3_4:73846782-73846801 | None:intergenic | 45.0% | |
| GCCACGAACAGCAAGAATTT+CGG | + | chr3_4:73846791-73846810 | None:intergenic | 45.0% | |
| GCCACAATACTGTGCTGTAT+AGG | + | chr3_4:73847292-73847311 | None:intergenic | 45.0% | |
| ATGAGAACCAGCGAGTACAT+TGG | - | chr3_4:73847473-73847492 | Msa0521200:intron | 45.0% | |
| AGGAAAACCAATGTACTCGC+TGG | + | chr3_4:73847483-73847502 | None:intergenic | 45.0% | |
| ATAGCCATGCACCACCAATA+TGG | - | chr3_4:73847710-73847729 | Msa0521200:CDS | 45.0% | |
| !! | TAATAAAAAAAAAAAAATAG+GGG | + | chr3_4:73844694-73844713 | None:intergenic | 5.0% |
| !! | CTAATAAAAAAAAAAAAATA+GGG | + | chr3_4:73844695-73844714 | None:intergenic | 5.0% |
| !! | ACTAATAAAAAAAAAAAAAT+AGG | + | chr3_4:73844696-73844715 | None:intergenic | 5.0% |
| GGGGATTGAGCGAATGATGA+GGG | + | chr3_4:73844469-73844488 | None:intergenic | 50.0% | |
| AGGGGATTGAGCGAATGATG+AGG | + | chr3_4:73844470-73844489 | None:intergenic | 50.0% | |
| TTCTTCTGCAGGTCTTCCGA+TGG | - | chr3_4:73844585-73844604 | Msa0521200:three_prime_UTR | 50.0% | |
| TCTTCTGCAGGTCTTCCGAT+GGG | - | chr3_4:73844586-73844605 | Msa0521200:three_prime_UTR | 50.0% | |
| GCCAAGTTCATCAAGGTTGG+GGG | - | chr3_4:73845268-73845287 | Msa0521200:intron | 50.0% | |
| CCAAGTTCATCAAGGTTGGG+GGG | - | chr3_4:73845269-73845288 | Msa0521200:intron | 50.0% | |
| GATGTTAGTGCCAGAAACCC+TGG | - | chr3_4:73845946-73845965 | Msa0521200:CDS | 50.0% | |
| ! | GTGCTGCCTGAATTTTGCCA+GGG | + | chr3_4:73845966-73845985 | None:intergenic | 50.0% |
| ! | AGTGCTGCCTGAATTTTGCC+AGG | + | chr3_4:73845967-73845986 | None:intergenic | 50.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr3_4:73846488-73846507 | None:intergenic | 50.0% | |
| CTGCTGAAGACATCCAATGG+CGG | + | chr3_4:73846730-73846749 | None:intergenic | 50.0% | |
| !! | GCCGAAATTCTTGCTGTTCG+TGG | - | chr3_4:73846787-73846806 | Msa0521200:intron | 50.0% |
| TAGTTGCTTCTTGCAGCACC+GGG | + | chr3_4:73847436-73847455 | None:intergenic | 50.0% | |
| CTAGTTGCTTCTTGCAGCAC+CGG | + | chr3_4:73847437-73847456 | None:intergenic | 50.0% | |
| CCCCCCAACCTTGATGAACT+TGG | + | chr3_4:73845272-73845291 | None:intergenic | 55.0% | |
| TTCAGCCATAACGTGCCTGC+AGG | - | chr3_4:73845765-73845784 | Msa0521200:intron | 55.0% | |
| TCAGCCATAACGTGCCTGCA+GGG | - | chr3_4:73845766-73845785 | Msa0521200:intron | 55.0% | |
| TTCGCTCAATCCCCTACCCC+TGG | - | chr3_4:73844475-73844494 | Msa0521200:three_prime_UTR | 60.0% | |
| TCGCTCAATCCCCTACCCCT+GGG | - | chr3_4:73844476-73844495 | Msa0521200:three_prime_UTR | 60.0% | |
| GAGTCCCTGCAGGCACGTTA+TGG | + | chr3_4:73845773-73845792 | None:intergenic | 60.0% | |
| AGACATCCAATGGCGGCTGC+CGG | + | chr3_4:73846723-73846742 | None:intergenic | 60.0% | |
| ! | AGCGGGGGTAGCAGAGCATC+CGG | - | chr3_4:73846701-73846720 | Msa0521200:intron | 65.0% |
| GAGCATCCGGCAGCCGCCAT+TGG | - | chr3_4:73846714-73846733 | Msa0521200:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 73844278 | 73847890 | 73844278 | ID=Msa0521200;Name=Msa0521200 |
| chr3_4 | mRNA | 73844278 | 73847890 | 73844278 | ID=Msa0521200-mRNA-1;Parent=Msa0521200;Name=Msa0521200-mRNA-1;_AED=0.13;_eAED=0.13;_QI=122|1|1|1|1|1|7|434|211 |
| chr3_4 | exon | 73844278 | 73844806 | 73844278 | ID=Msa0521200-mRNA-1:exon:20816;Parent=Msa0521200-mRNA-1 |
| chr3_4 | exon | 73845909 | 73846017 | 73845909 | ID=Msa0521200-mRNA-1:exon:20815;Parent=Msa0521200-mRNA-1 |
| chr3_4 | exon | 73846115 | 73846231 | 73846115 | ID=Msa0521200-mRNA-1:exon:20814;Parent=Msa0521200-mRNA-1 |
| chr3_4 | exon | 73846335 | 73846398 | 73846335 | ID=Msa0521200-mRNA-1:exon:20813;Parent=Msa0521200-mRNA-1 |
| chr3_4 | exon | 73846584 | 73846692 | 73846584 | ID=Msa0521200-mRNA-1:exon:20812;Parent=Msa0521200-mRNA-1 |
| chr3_4 | exon | 73847529 | 73847572 | 73847529 | ID=Msa0521200-mRNA-1:exon:20811;Parent=Msa0521200-mRNA-1 |
| chr3_4 | exon | 73847671 | 73847890 | 73847671 | ID=Msa0521200-mRNA-1:exon:20810;Parent=Msa0521200-mRNA-1 |
| chr3_4 | five_prime_UTR | 73847769 | 73847890 | 73847769 | ID=Msa0521200-mRNA-1:five_prime_utr;Parent=Msa0521200-mRNA-1 |
| chr3_4 | CDS | 73847671 | 73847768 | 73847671 | ID=Msa0521200-mRNA-1:cds;Parent=Msa0521200-mRNA-1 |
| chr3_4 | CDS | 73847529 | 73847572 | 73847529 | ID=Msa0521200-mRNA-1:cds;Parent=Msa0521200-mRNA-1 |
| chr3_4 | CDS | 73846584 | 73846692 | 73846584 | ID=Msa0521200-mRNA-1:cds;Parent=Msa0521200-mRNA-1 |
| chr3_4 | CDS | 73846335 | 73846398 | 73846335 | ID=Msa0521200-mRNA-1:cds;Parent=Msa0521200-mRNA-1 |
| chr3_4 | CDS | 73846115 | 73846231 | 73846115 | ID=Msa0521200-mRNA-1:cds;Parent=Msa0521200-mRNA-1 |
| chr3_4 | CDS | 73845909 | 73846017 | 73845909 | ID=Msa0521200-mRNA-1:cds;Parent=Msa0521200-mRNA-1 |
| chr3_4 | CDS | 73844712 | 73844806 | 73844712 | ID=Msa0521200-mRNA-1:cds;Parent=Msa0521200-mRNA-1 |
| chr3_4 | three_prime_UTR | 73844278 | 73844711 | 73844278 | ID=Msa0521200-mRNA-1:three_prime_utr;Parent=Msa0521200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
