Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476830 | XP_003603346.1 | 99.526 | 211 | 0 | 1 | 1 | 211 | 1 | 210 | 3.04e-148 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476830 | sp|Q8VY97|Y4213_ARATH | 74.286 | 175 | 43 | 1 | 33 | 207 | 29 | 201 | 9.10e-84 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476830 | G7JAF8 | 99.526 | 211 | 0 | 1 | 1 | 211 | 1 | 210 | 1.45e-148 | 421 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0432400 | Msa0476830 | 0.982373 | 6.328315e-155 | -8.615850e-47 |
| Msa0476830 | Msa0521200 | 0.987009 | 9.782110e-169 | -8.615850e-47 |
| Msa0476830 | Msa0829120 | 0.996470 | 6.153132e-228 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476830 | MtrunA17_Chr3g0137401 | 99.526 | 211 | 0 | 1 | 1 | 211 | 1 | 210 | 2.80e-152 | 421 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476830 | AT2G25310.1 | 72.637 | 201 | 51 | 2 | 10 | 210 | 13 | 209 | 4.90e-92 | 268 |
| Msa0476830 | AT4G32130.1 | 74.286 | 175 | 43 | 1 | 33 | 207 | 29 | 201 | 9.25e-85 | 249 |
Find 68 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGTATAATTTCTTTATT+TGG | 0.158836 | 3_3:-80727706 | Msa0476830:three_prime_UTR |
| TAATACTGTTCCTCCTTTAA+TGG | 0.168757 | 3_3:+80729432 | None:intergenic |
| ACCCATGTTCTCCATCAATT+TGG | 0.172914 | 3_3:+80729220 | None:intergenic |
| GTCCTCATGCCTAAATTATT+TGG | 0.186235 | 3_3:-80727684 | Msa0476830:three_prime_UTR |
| TGAGCACGTTTCATTTCTTC+TGG | 0.232081 | 3_3:+80728094 | None:intergenic |
| TCCGATGGGTACACTATTTA+TGG | 0.232266 | 3_3:-80730859 | Msa0476830:CDS |
| AATGTCAAAGTTATACTTAA+TGG | 0.264904 | 3_3:-80729943 | Msa0476830:CDS |
| ATTTGGTTTATGATCTGTTT+TGG | 0.300143 | 3_3:-80727667 | Msa0476830:three_prime_UTR |
| TTTCCTTATGCCCAAATTGA+TGG | 0.308008 | 3_3:-80729231 | Msa0476830:CDS |
| GATCATAAACCAAATAATTT+AGG | 0.315950 | 3_3:+80727675 | None:intergenic |
| CTCTGAATATTGGCAATCTA+TGG | 0.334167 | 3_3:-80731078 | Msa0476830:exon |
| AATGTGAAACATACATGAAT+AGG | 0.340448 | 3_3:-80727819 | Msa0476830:three_prime_UTR |
| CAGAAACCCTGGCAAAATTC+AGG | 0.352622 | 3_3:-80729502 | Msa0476830:CDS |
| CCCATGTTCTCCATCAATTT+GGG | 0.365935 | 3_3:+80729221 | None:intergenic |
| AGGCAGCACTGACAGAAAAT+AGG | 0.378833 | 3_3:-80729482 | Msa0476830:CDS |
| TCTCCATCAATTTGGGCATA+AGG | 0.387908 | 3_3:+80729228 | None:intergenic |
| ATGCACCACCAATATGGATA+TGG | 0.393207 | 3_3:-80727742 | Msa0476830:three_prime_UTR |
| ACAAGCAACCATATCCATAT+TGG | 0.425328 | 3_3:+80727734 | None:intergenic |
| ATAGCCATGCACCACCAATA+TGG | 0.426630 | 3_3:-80727748 | Msa0476830:three_prime_UTR |
| GAGTCCCTGCAGGCACGTTA+TGG | 0.435724 | 3_3:+80729690 | None:intergenic |
| CTAGTTGCTTCTTGCAGCAC+CGG | 0.438332 | 3_3:+80728024 | None:intergenic |
| TTCAGCCATAACGTGCCTGC+AGG | 0.459980 | 3_3:-80729695 | Msa0476830:intron |
| TTCGCTCAATCCCCTACCCC+TGG | 0.471489 | 3_3:-80730984 | Msa0476830:CDS |
| TTAATTGAAGTGGCTGCAAA+AGG | 0.475291 | 3_3:-80729665 | Msa0476830:CDS |
| TTCTTCTGCAGGTCTTCCGA+TGG | 0.484478 | 3_3:-80730874 | Msa0476830:intron |
| CAAGAAGAAATGAGAAATCA+AGG | 0.494262 | 3_3:-80728073 | Msa0476830:CDS |
| AAAGGAGGAACAGTATTATG+AGG | 0.495382 | 3_3:-80729427 | Msa0476830:intron |
| AGAAAGCAAGTGCAGTTACA+TGG | 0.495922 | 3_3:+80727793 | None:intergenic |
| TTTACAAGCATTAGCAGGCA+TGG | 0.497892 | 3_3:+80727609 | None:intergenic |
| GGTAACAAGCTTGCTAAAGA+TGG | 0.499603 | 3_3:+80728046 | None:intergenic |
| TATATCTTCAGCTTCTGCTC+AGG | 0.500434 | 3_3:+80727958 | None:intergenic |
| GAAATTGATACCCAGGGGTA+GGG | 0.501096 | 3_3:+80730973 | None:intergenic |
| GCCCAAATTGATGGAGAACA+TGG | 0.506778 | 3_3:-80729222 | Msa0476830:CDS |
| TCCATTGTGAAAAGTCCAAT+GGG | 0.507206 | 3_3:-80729284 | Msa0476830:CDS |
| TACAATGAGAAATATCCATC+AGG | 0.508843 | 3_3:+80729895 | None:intergenic |
| GGGGATTGAGCGAATGATGA+GGG | 0.521949 | 3_3:+80730993 | None:intergenic |
| TGAAAACACACTGATCTGTT+CGG | 0.526487 | 3_3:+80731104 | None:intergenic |
| AAGTCCAATGGGTCTGATGA+TGG | 0.529960 | 3_3:-80729273 | Msa0476830:CDS |
| GTCCATTGTGAAAAGTCCAA+TGG | 0.530848 | 3_3:-80729285 | Msa0476830:CDS |
| AAATTGATACCCAGGGGTAG+GGG | 0.531505 | 3_3:+80730974 | None:intergenic |
| AATCCCATCATCAGACCCAT+TGG | 0.537133 | 3_3:+80729269 | None:intergenic |
| AGTCCAATGGGTCTGATGAT+GGG | 0.541406 | 3_3:-80729272 | Msa0476830:CDS |
| ACAATGGACATAATAGAGAA+TGG | 0.546124 | 3_3:+80729299 | None:intergenic |
| GATGTTAGTGCCAGAAACCC+TGG | 0.551828 | 3_3:-80729513 | Msa0476830:CDS |
| AGGGACTCATTTAATTGAAG+TGG | 0.553198 | 3_3:-80729675 | Msa0476830:CDS |
| CAGCACTGACAGAAAATAGG+AGG | 0.557041 | 3_3:-80729479 | Msa0476830:CDS |
| TCGCTCAATCCCCTACCCCT+GGG | 0.564664 | 3_3:-80730983 | Msa0476830:intron |
| TGAAATTGATACCCAGGGGT+AGG | 0.565785 | 3_3:+80730972 | None:intergenic |
| AGCAACCATATCCATATTGG+TGG | 0.567127 | 3_3:+80727737 | None:intergenic |
| TAGTTGCTTCTTGCAGCACC+GGG | 0.567421 | 3_3:+80728025 | None:intergenic |
| TCAATTAAATGAGTCCCTGC+AGG | 0.577390 | 3_3:+80729680 | None:intergenic |
| AGGGGATTGAGCGAATGATG+AGG | 0.577465 | 3_3:+80730992 | None:intergenic |
| TCTTTAGCAAGCTTGTTACC+CGG | 0.579704 | 3_3:-80728043 | Msa0476830:CDS |
| ATGAGAACCAGCGAGTACAT+TGG | 0.587034 | 3_3:-80727985 | Msa0476830:three_prime_UTR |
| AGGAAAACCAATGTACTCGC+TGG | 0.587347 | 3_3:+80727978 | None:intergenic |
| AATAACAAAATTCTCTATCA+CGG | 0.589670 | 3_3:+80727928 | None:intergenic |
| AAGAAAGAGTGATTTCGTGA+AGG | 0.590259 | 3_3:+80731052 | None:intergenic |
| AACCAAATAATTTAGGCATG+AGG | 0.590752 | 3_3:+80727682 | None:intergenic |
| TCTTCTGCAGGTCTTCCGAT+GGG | 0.594131 | 3_3:-80730873 | Msa0476830:intron |
| ATATCCATATTGGTGGTGCA+TGG | 0.596001 | 3_3:+80727744 | None:intergenic |
| CACTGACAGAAAATAGGAGG+GGG | 0.615655 | 3_3:-80729476 | Msa0476830:CDS |
| GTCAAAGTTATACTTAATGG+TGG | 0.622746 | 3_3:-80729940 | Msa0476830:CDS |
| TCAGCCATAACGTGCCTGCA+GGG | 0.625157 | 3_3:-80729694 | Msa0476830:intron |
| AGCACTGACAGAAAATAGGA+GGG | 0.637222 | 3_3:-80729478 | Msa0476830:CDS |
| ACCATAAATAGTGTACCCAT+CGG | 0.641346 | 3_3:+80730858 | None:intergenic |
| CCCAAATTGATGGAGAACAT+GGG | 0.655293 | 3_3:-80729221 | Msa0476830:intron |
| GCACTGACAGAAAATAGGAG+GGG | 0.661192 | 3_3:-80729477 | Msa0476830:CDS |
| ATCTGTGATTGTATACGCTG+TGG | 0.672240 | 3_3:-80727885 | Msa0476830:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAATCAAATATAAAC+TGG | + | chr3_3:80728265-80728284 | None:intergenic | 10.0% |
| !!! | TATGAAATATTTAGAATTTT+AGG | - | chr3_3:80728284-80728303 | Msa0476830:intron | 10.0% |
| !! | AAGTAAATATAGAATTAAAT+AGG | + | chr3_3:80728970-80728989 | None:intergenic | 10.0% |
| !! | AAAACAAAAAAAAAAATTAG+GGG | + | chr3_3:80729184-80729203 | None:intergenic | 10.0% |
| !! | GAAAACAAAAAAAAAAATTA+GGG | + | chr3_3:80729185-80729204 | None:intergenic | 10.0% |
| !! | AAATTTAAATTCAAGAAAAT+GGG | + | chr3_3:80730172-80730191 | None:intergenic | 10.0% |
| !! | AAAATTTAAATTCAAGAAAA+TGG | + | chr3_3:80730173-80730192 | None:intergenic | 10.0% |
| !!! | TGAATTTAAATTTTAATGTT+CGG | - | chr3_3:80730179-80730198 | Msa0476830:intron | 10.0% |
| !! | ATCGAAAAATTGAAAAATTA+GGG | + | chr3_3:80727836-80727855 | None:intergenic | 15.0% |
| !! | AATCGAAAAATTGAAAAATT+AGG | + | chr3_3:80727837-80727856 | None:intergenic | 15.0% |
| !! | TATTAAATTCGTTAAAATCA+AGG | + | chr3_3:80727875-80727894 | None:intergenic | 15.0% |
| !!! | AATTACAAAAATAGCATTTT+TGG | - | chr3_3:80728455-80728474 | Msa0476830:intron | 15.0% |
| !! | GGAAAACAAAAAAAAAAATT+AGG | + | chr3_3:80729186-80729205 | None:intergenic | 15.0% |
| !!! | TGAATTTGAATTTTCTTATA+GGG | - | chr3_3:80730915-80730934 | Msa0476830:intron | 15.0% |
| !! | CATTGTATAATTTCTTTATT+TGG | - | chr3_3:80731065-80731084 | Msa0476830:exon | 15.0% |
| !! | ATTGAAAAATTAGGGTTTAA+GGG | + | chr3_3:80727828-80727847 | None:intergenic | 20.0% |
| !! | AATTGAAAAATTAGGGTTTA+AGG | + | chr3_3:80727829-80727848 | None:intergenic | 20.0% |
| !! | ATGAATCTTATAATGATGAA+AGG | + | chr3_3:80727966-80727985 | None:intergenic | 20.0% |
| !!! | TTAAACATCAAACATTGATT+GGG | + | chr3_3:80728037-80728056 | None:intergenic | 20.0% |
| !! | ATTAAACATCAAACATTGAT+TGG | + | chr3_3:80728038-80728057 | None:intergenic | 20.0% |
| !! | AATGTCAAAGTTATACTTAA+TGG | - | chr3_3:80728828-80728847 | Msa0476830:intron | 20.0% |
| !! | GAAATAAAGTTGTAAATCAA+AGG | + | chr3_3:80728903-80728922 | None:intergenic | 20.0% |
| !!! | TAATTTGCATGAAAACTTTT+TGG | - | chr3_3:80728933-80728952 | Msa0476830:intron | 20.0% |
| !!! | AATTTGCATGAAAACTTTTT+GGG | - | chr3_3:80728934-80728953 | Msa0476830:intron | 20.0% |
| !!! | TACTTATTTTGTTTTGCTTT+TGG | - | chr3_3:80728985-80729004 | Msa0476830:intron | 20.0% |
| !!! | ACTTATTTTGTTTTGCTTTT+GGG | - | chr3_3:80728986-80729005 | Msa0476830:intron | 20.0% |
| !!! | AAGTTATAGTTGATTGATTT+TGG | - | chr3_3:80729009-80729028 | Msa0476830:intron | 20.0% |
| !! | ACATTCAGATAATAATCTTA+AGG | + | chr3_3:80729414-80729433 | None:intergenic | 20.0% |
| !! | AAATGAAAGAAGTTTATAGA+TGG | + | chr3_3:80729591-80729610 | None:intergenic | 20.0% |
| !!! | TCAAAAATGTAAAAGTATAC+TGG | + | chr3_3:80730426-80730445 | None:intergenic | 20.0% |
| !! | AATAACAAAATTCTCTATCA+CGG | + | chr3_3:80730846-80730865 | None:intergenic | 20.0% |
| !!! | GAATTTTGTTATTAACAAGT+TGG | - | chr3_3:80730853-80730872 | Msa0476830:CDS | 20.0% |
| !!! | CTGAATTTGAATTTTCTTAT+AGG | - | chr3_3:80730914-80730933 | Msa0476830:intron | 20.0% |
| !! | GATCATAAACCAAATAATTT+AGG | + | chr3_3:80731099-80731118 | None:intergenic | 20.0% |
| !!! | TTTCAATTTTTCGATTGCAT+CGG | - | chr3_3:80727841-80727860 | Msa0476830:three_prime_UTR | 25.0% |
| ! | AATTTAATAACTTCTTCTGC+AGG | - | chr3_3:80727886-80727905 | Msa0476830:three_prime_UTR | 25.0% |
| ! | ATCTTATAATGATGAAAGGT+GGG | + | chr3_3:80727962-80727981 | None:intergenic | 25.0% |
| ! | AATCTTATAATGATGAAAGG+TGG | + | chr3_3:80727963-80727982 | None:intergenic | 25.0% |
| !! | TTTTAGGCTAAAACAATGTT+TGG | - | chr3_3:80728300-80728319 | Msa0476830:intron | 25.0% |
| ! | TAAAAACAAAATAGTGCACA+AGG | + | chr3_3:80728370-80728389 | None:intergenic | 25.0% |
| !!! | AAATAGCATTTTTGGTTTCA+TGG | - | chr3_3:80728463-80728482 | Msa0476830:intron | 25.0% |
| !! | CCTATATAACTCTTTGAAAA+TGG | + | chr3_3:80728494-80728513 | None:intergenic | 25.0% |
| !! | CCATTTTCAAAGAGTTATAT+AGG | - | chr3_3:80728491-80728510 | Msa0476830:intron | 25.0% |
| !! | CATGGATTTTCTATAAATGT+TGG | - | chr3_3:80728712-80728731 | Msa0476830:intron | 25.0% |
| !! | TATAAATGTTGGTTGTATGA+TGG | - | chr3_3:80728723-80728742 | Msa0476830:intron | 25.0% |
| !! | ATTTGCATGAAAACTTTTTG+GGG | - | chr3_3:80728935-80728954 | Msa0476830:intron | 25.0% |
| ! | TTTAATACATGAGCAAACAT+AGG | + | chr3_3:80729207-80729226 | None:intergenic | 25.0% |
| ! | TTATTGTGTCCATTAACAAA+AGG | - | chr3_3:80729227-80729246 | Msa0476830:CDS | 25.0% |
| ! | GATAATAATCTTAAGGAATG+TGG | + | chr3_3:80729407-80729426 | None:intergenic | 25.0% |
| !!! | ATCTTGTTTTTCTACAGATT+AGG | - | chr3_3:80729446-80729465 | Msa0476830:CDS | 25.0% |
| !!! | TCTTGTTTTTCTACAGATTA+GGG | - | chr3_3:80729447-80729466 | Msa0476830:CDS | 25.0% |
| !!! | GTTTATAGATGGATTTTAGA+AGG | + | chr3_3:80729580-80729599 | None:intergenic | 25.0% |
| ! | ACAAATAAGAAAAACTCGAA+AGG | + | chr3_3:80729614-80729633 | None:intergenic | 25.0% |
| !!! | TTTCTTATTTGTTGTCTATG+TGG | - | chr3_3:80729622-80729641 | Msa0476830:intron | 25.0% |
| ! | AAATGATTACTCATTACCTT+AGG | - | chr3_3:80729667-80729686 | Msa0476830:CDS | 25.0% |
| ! | GTTTCATAAAATTCTACCTA+AGG | + | chr3_3:80729686-80729705 | None:intergenic | 25.0% |
| !!! | TTAGGGAGAGAAATTTTTTT+TGG | + | chr3_3:80729842-80729861 | None:intergenic | 25.0% |
| !! | TCATTAATAAGAGCACATTA+GGG | + | chr3_3:80729859-80729878 | None:intergenic | 25.0% |
| ! | GTTAAAAAATCACAATCATG+AGG | - | chr3_3:80729948-80729967 | Msa0476830:CDS | 25.0% |
| ! | GCAAAACATAGAAGAAAATA+CGG | + | chr3_3:80730349-80730368 | None:intergenic | 25.0% |
| ! | TATGTATTGCAAACTTCTAA+GGG | + | chr3_3:80730457-80730476 | None:intergenic | 25.0% |
| ! | AATGTGAAACATACATGAAT+AGG | - | chr3_3:80730952-80730971 | Msa0476830:intron | 25.0% |
| !!! | ATTTGGTTTATGATCTGTTT+TGG | - | chr3_3:80731104-80731123 | Msa0476830:five_prime_UTR | 25.0% |
| ! | GTTTTCACAACTCTGAATAT+TGG | - | chr3_3:80727683-80727702 | Msa0476830:three_prime_UTR | 30.0% |
| ATTGATTATTGCATCCTTGA+TGG | - | chr3_3:80728152-80728171 | Msa0476830:intron | 30.0% | |
| TTGATTATTGCATCCTTGAT+GGG | - | chr3_3:80728153-80728172 | Msa0476830:intron | 30.0% | |
| ! | ACTGATAATGCATTAAAGCA+TGG | + | chr3_3:80728346-80728365 | None:intergenic | 30.0% |
| ! | CAACAAACTAAGAGTATGTT+TGG | - | chr3_3:80728402-80728421 | Msa0476830:intron | 30.0% |
| AGTTAATGATTTAGCTATCC+AGG | - | chr3_3:80728604-80728623 | Msa0476830:intron | 30.0% | |
| ! | ATCTATTTTGTGAGGATACA+TGG | - | chr3_3:80728694-80728713 | Msa0476830:intron | 30.0% |
| !! | TTGACATTTGAAACTTTTGC+AGG | + | chr3_3:80728816-80728835 | None:intergenic | 30.0% |
| GTCAAAGTTATACTTAATGG+TGG | - | chr3_3:80728831-80728850 | Msa0476830:intron | 30.0% | |
| TACAATGAGAAATATCCATC+AGG | + | chr3_3:80728879-80728898 | None:intergenic | 30.0% | |
| ! | TTTTCATGCAAATTATGAGC+AGG | + | chr3_3:80728928-80728947 | None:intergenic | 30.0% |
| !!! | GTTTGTTTTAGAGCCATTAA+AGG | - | chr3_3:80729326-80729345 | Msa0476830:intron | 30.0% |
| TAATACTGTTCCTCCTTTAA+TGG | + | chr3_3:80729342-80729361 | None:intergenic | 30.0% | |
| TAATCTTAAGGAATGTGGAA+AGG | + | chr3_3:80729402-80729421 | None:intergenic | 30.0% | |
| ACAATGGACATAATAGAGAA+TGG | + | chr3_3:80729475-80729494 | None:intergenic | 30.0% | |
| !!! | GAGAAATTTTTTTTGGAGCA+TGG | + | chr3_3:80729835-80729854 | None:intergenic | 30.0% |
| ! | CTCATTAATAAGAGCACATT+AGG | + | chr3_3:80729860-80729879 | None:intergenic | 30.0% |
| ! | GTCCTATTTGAAATACTTTG+TGG | - | chr3_3:80729879-80729898 | Msa0476830:intron | 30.0% |
| ! | GACCACAAAGTATTTCAAAT+AGG | + | chr3_3:80729884-80729903 | None:intergenic | 30.0% |
| ATAAACAAAGCACAGCTTAT+GGG | + | chr3_3:80729908-80729927 | None:intergenic | 30.0% | |
| AATAAACAAAGCACAGCTTA+TGG | + | chr3_3:80729909-80729928 | None:intergenic | 30.0% | |
| TAAGCCTATTTAGTCAATAG+CGG | - | chr3_3:80729996-80730015 | Msa0476830:intron | 30.0% | |
| TAACAAACATGTGAGAAACA+AGG | + | chr3_3:80730296-80730315 | None:intergenic | 30.0% | |
| GTATGTATTGCAAACTTCTA+AGG | + | chr3_3:80730458-80730477 | None:intergenic | 30.0% | |
| CATTTCATCACACGAAATTA+TGG | + | chr3_3:80730529-80730548 | None:intergenic | 30.0% | |
| CATAATTTCGTGTGATGAAA+TGG | - | chr3_3:80730527-80730546 | Msa0476830:intron | 30.0% | |
| CTCATATCTTGAATGTATTG+TGG | - | chr3_3:80730644-80730663 | Msa0476830:intron | 30.0% | |
| CAAGAAGAAATGAGAAATCA+AGG | - | chr3_3:80730698-80730717 | Msa0476830:intron | 30.0% | |
| AACCAAATAATTTAGGCATG+AGG | + | chr3_3:80731092-80731111 | None:intergenic | 30.0% | |
| !!! | CATTTTTTACAAGCATTAGC+AGG | + | chr3_3:80731170-80731189 | None:intergenic | 30.0% |
| TGAAAACACACTGATCTGTT+CGG | + | chr3_3:80727670-80727689 | None:intergenic | 35.0% | |
| CTCTGAATATTGGCAATCTA+TGG | - | chr3_3:80727693-80727712 | Msa0476830:three_prime_UTR | 35.0% | |
| AAGAAAGAGTGATTTCGTGA+AGG | + | chr3_3:80727722-80727741 | None:intergenic | 35.0% | |
| GATATGAAATTGATACCCAG+GGG | + | chr3_3:80727806-80727825 | None:intergenic | 35.0% | |
| GGATATGAAATTGATACCCA+GGG | + | chr3_3:80727807-80727826 | None:intergenic | 35.0% | |
| ACCATAAATAGTGTACCCAT+CGG | + | chr3_3:80727916-80727935 | None:intergenic | 35.0% | |
| !! | TCATAGTACATGATTTGCTG+TGG | - | chr3_3:80728122-80728141 | Msa0476830:intron | 35.0% |
| CAAGGATGCAATAATCAATC+AGG | + | chr3_3:80728151-80728170 | None:intergenic | 35.0% | |
| ACTGGCAAAAACTTTAAACC+AGG | + | chr3_3:80728247-80728266 | None:intergenic | 35.0% | |
| ! | CCTTGATCAGATTTTTCTAG+CGG | - | chr3_3:80728546-80728565 | Msa0476830:intron | 35.0% |
| !! | TAGTTTTGCCAAGTTCATCA+AGG | - | chr3_3:80728572-80728591 | Msa0476830:intron | 35.0% |
| GTAGTGTGCATTTGTGAATA+CGG | + | chr3_3:80728662-80728681 | None:intergenic | 35.0% | |
| ACAAAATAGATGCACAACGA+CGG | + | chr3_3:80728685-80728704 | None:intergenic | 35.0% | |
| ! | ATGGTATCACTGGATCTTTT+TGG | - | chr3_3:80728761-80728780 | Msa0476830:intron | 35.0% |
| ! | GTCAAAGAGTTTCTTTTCTG+AGG | - | chr3_3:80728853-80728872 | Msa0476830:intron | 35.0% |
| AGGGACTCATTTAATTGAAG+TGG | - | chr3_3:80729096-80729115 | Msa0476830:intron | 35.0% | |
| TTAATTGAAGTGGCTGCAAA+AGG | - | chr3_3:80729106-80729125 | Msa0476830:intron | 35.0% | |
| TTTCCAAATTGAGTACTCAC+TGG | + | chr3_3:80729145-80729164 | None:intergenic | 35.0% | |
| ! | CAACTCGTACCTTTTGTTAA+TGG | + | chr3_3:80729239-80729258 | None:intergenic | 35.0% |
| !!! | TGTTTTAGAGCCATTAAAGG+AGG | - | chr3_3:80729329-80729348 | Msa0476830:intron | 35.0% |
| AAAGGAGGAACAGTATTATG+AGG | - | chr3_3:80729344-80729363 | Msa0476830:intron | 35.0% | |
| TCCATTGTGAAAAGTCCAAT+GGG | - | chr3_3:80729487-80729506 | Msa0476830:CDS | 35.0% | |
| TTTCCTTATGCCCAAATTGA+TGG | - | chr3_3:80729540-80729559 | Msa0476830:intron | 35.0% | |
| AAAACAGAAACAGCTGCTAT+GGG | + | chr3_3:80729718-80729737 | None:intergenic | 35.0% | |
| TAAACAAAGCACAGCTTATG+GGG | + | chr3_3:80729907-80729926 | None:intergenic | 35.0% | |
| ! | TATGCATCTTGTGTGCTTTT+GGG | - | chr3_3:80729971-80729990 | Msa0476830:CDS | 35.0% |
| AAGCCTATTTAGTCAATAGC+GGG | - | chr3_3:80729997-80730016 | Msa0476830:intron | 35.0% | |
| ! | GACTTCTATGTTTCGAGTAT+CGG | - | chr3_3:80730380-80730399 | Msa0476830:intron | 35.0% |
| AAGTATACTGGACATAGAAG+AGG | + | chr3_3:80730414-80730433 | None:intergenic | 35.0% | |
| TCATACTGTTTCAGAGATGA+TGG | + | chr3_3:80730556-80730575 | None:intergenic | 35.0% | |
| !! | CATCTCTGAAACAGTATGAA+TGG | - | chr3_3:80730557-80730576 | Msa0476830:intron | 35.0% |
| ACAAGCAACCATATCCATAT+TGG | + | chr3_3:80731040-80731059 | None:intergenic | 35.0% | |
| GTCCTCATGCCTAAATTATT+TGG | - | chr3_3:80731087-80731106 | Msa0476830:five_prime_UTR | 35.0% | |
| GGGATATGAAATTGATACCC+AGG | + | chr3_3:80727808-80727827 | None:intergenic | 40.0% | |
| TCCGATGGGTACACTATTTA+TGG | - | chr3_3:80727912-80727931 | Msa0476830:three_prime_UTR | 40.0% | |
| TGAAAGGTGGGAACTTACTA+GGG | + | chr3_3:80727950-80727969 | None:intergenic | 40.0% | |
| ATGAAAGGTGGGAACTTACT+AGG | + | chr3_3:80727951-80727970 | None:intergenic | 40.0% | |
| TGAACTTCGATCAGTAAACG+AGG | - | chr3_3:80728093-80728112 | Msa0476830:CDS | 40.0% | |
| TCCTTGATGGGACTGTTAAT+CGG | - | chr3_3:80728165-80728184 | Msa0476830:intron | 40.0% | |
| CTTTCAAGCACAGTCAATTC+AGG | + | chr3_3:80728221-80728240 | None:intergenic | 40.0% | |
| CCGCTAGAAAAATCTGATCA+AGG | + | chr3_3:80728549-80728568 | None:intergenic | 40.0% | |
| TTTGCCAAGTTCATCAAGGT+TGG | - | chr3_3:80728576-80728595 | Msa0476830:intron | 40.0% | |
| TTGCCAAGTTCATCAAGGTT+GGG | - | chr3_3:80728577-80728596 | Msa0476830:intron | 40.0% | |
| AACTTTGACAGTTCAACTCC+TGG | + | chr3_3:80728625-80728644 | None:intergenic | 40.0% | |
| CAAAATAGATGCACAACGAC+GGG | + | chr3_3:80728684-80728703 | None:intergenic | 40.0% | |
| ! | CGTTGTGCATCTATTTTGTG+AGG | - | chr3_3:80728686-80728705 | Msa0476830:intron | 40.0% |
| ATGGTATCGCTGGAGTATAA+TGG | - | chr3_3:80728742-80728761 | Msa0476830:intron | 40.0% | |
| CTGGAGTATAATGGTATCAC+TGG | - | chr3_3:80728751-80728770 | Msa0476830:intron | 40.0% | |
| !! | TATCACTGGATCTTTTTGGC+AGG | - | chr3_3:80728765-80728784 | Msa0476830:intron | 40.0% |
| !! | TGGATCTTTTTGGCAGGTTT+TGG | - | chr3_3:80728771-80728790 | Msa0476830:intron | 40.0% |
| AGCATTCACGTTAAGGAACT+TGG | + | chr3_3:80729056-80729075 | None:intergenic | 40.0% | |
| TCAATTAAATGAGTCCCTGC+AGG | + | chr3_3:80729094-80729113 | None:intergenic | 40.0% | |
| TCTCCAGTGAGTACTCAATT+TGG | - | chr3_3:80729139-80729158 | Msa0476830:intron | 40.0% | |
| !! | AGCACTGACAGAAAATAGGA+GGG | - | chr3_3:80729293-80729312 | Msa0476830:CDS | 40.0% |
| GAGGAACAGTATTATGAGGT+TGG | - | chr3_3:80729348-80729367 | Msa0476830:intron | 40.0% | |
| ATGTGGAAAGGAACACAAAC+AGG | + | chr3_3:80729390-80729409 | None:intergenic | 40.0% | |
| GTCCATTGTGAAAAGTCCAA+TGG | - | chr3_3:80729486-80729505 | Msa0476830:CDS | 40.0% | |
| ! | ACCCATTGGACTTTTCACAA+TGG | + | chr3_3:80729491-80729510 | None:intergenic | 40.0% |
| TCTCCATCAATTTGGGCATA+AGG | + | chr3_3:80729546-80729565 | None:intergenic | 40.0% | |
| CCCATGTTCTCCATCAATTT+GGG | + | chr3_3:80729553-80729572 | None:intergenic | 40.0% | |
| CCCAAATTGATGGAGAACAT+GGG | - | chr3_3:80729550-80729569 | Msa0476830:intron | 40.0% | |
| ACCCATGTTCTCCATCAATT+TGG | + | chr3_3:80729554-80729573 | None:intergenic | 40.0% | |
| CAAAACAGAAACAGCTGCTA+TGG | + | chr3_3:80729719-80729738 | None:intergenic | 40.0% | |
| GAGAGAGGAAGAAAGATAAG+AGG | + | chr3_3:80729787-80729806 | None:intergenic | 40.0% | |
| !!! | TTTTTTTGGAGCATGGAGAG+AGG | + | chr3_3:80729828-80729847 | None:intergenic | 40.0% |
| AAACAAAGCACAGCTTATGG+GGG | + | chr3_3:80729906-80729925 | None:intergenic | 40.0% | |
| ! | GTATGCATCTTGTGTGCTTT+TGG | - | chr3_3:80729970-80729989 | Msa0476830:CDS | 40.0% |
| AGCCTATTTAGTCAATAGCG+GGG | - | chr3_3:80729998-80730017 | Msa0476830:intron | 40.0% | |
| ! | TGAGCATTTGAGTTTCACAG+AGG | + | chr3_3:80730126-80730145 | None:intergenic | 40.0% |
| ACTCGAAACATAGAAGTCAC+AGG | + | chr3_3:80730378-80730397 | None:intergenic | 40.0% | |
| ACCTATACAGCACAGTATTG+TGG | - | chr3_3:80730601-80730620 | Msa0476830:intron | 40.0% | |
| TGAGCACGTTTCATTTCTTC+TGG | + | chr3_3:80730680-80730699 | None:intergenic | 40.0% | |
| !! | GGTAACAAGCTTGCTAAAGA+TGG | + | chr3_3:80730728-80730747 | None:intergenic | 40.0% |
| !! | TCTTTAGCAAGCTTGTTACC+CGG | - | chr3_3:80730728-80730747 | Msa0476830:intron | 40.0% |
| TATATCTTCAGCTTCTGCTC+AGG | + | chr3_3:80730816-80730835 | None:intergenic | 40.0% | |
| ATCTGTGATTGTATACGCTG+TGG | - | chr3_3:80730886-80730905 | Msa0476830:intron | 40.0% | |
| AGAAAGCAAGTGCAGTTACA+TGG | + | chr3_3:80730981-80731000 | None:intergenic | 40.0% | |
| !! | ATATCCATATTGGTGGTGCA+TGG | + | chr3_3:80731030-80731049 | None:intergenic | 40.0% |
| ATGCACCACCAATATGGATA+TGG | - | chr3_3:80731029-80731048 | Msa0476830:CDS | 40.0% | |
| AGCAACCATATCCATATTGG+TGG | + | chr3_3:80731037-80731056 | None:intergenic | 40.0% | |
| !!! | ATGATCTGTTTTGGCTGCAT+TGG | - | chr3_3:80731113-80731132 | Msa0476830:five_prime_UTR | 40.0% |
| TTTACAAGCATTAGCAGGCA+TGG | + | chr3_3:80731165-80731184 | None:intergenic | 40.0% | |
| AAATTGATACCCAGGGGTAG+GGG | + | chr3_3:80727800-80727819 | None:intergenic | 45.0% | |
| GAAATTGATACCCAGGGGTA+GGG | + | chr3_3:80727801-80727820 | None:intergenic | 45.0% | |
| TGAAATTGATACCCAGGGGT+AGG | + | chr3_3:80727802-80727821 | None:intergenic | 45.0% | |
| ACCGATTAACAGTCCCATCA+AGG | + | chr3_3:80728169-80728188 | None:intergenic | 45.0% | |
| GACTGTGCTTGAAAGTTACC+TGG | - | chr3_3:80728226-80728245 | Msa0476830:intron | 45.0% | |
| TGCCAAGTTCATCAAGGTTG+GGG | - | chr3_3:80728578-80728597 | Msa0476830:intron | 45.0% | |
| TGGTTGTATGATGGTATCGC+TGG | - | chr3_3:80728732-80728751 | Msa0476830:intron | 45.0% | |
| !!! | GTTTCTTTTCTGAGGCCTGA+TGG | - | chr3_3:80728861-80728880 | Msa0476830:intron | 45.0% |
| !! | GGCTGAAAGCATTCACGTTA+AGG | + | chr3_3:80729063-80729082 | None:intergenic | 45.0% |
| ! | CTGAATTTTGCCAGGGTTTC+TGG | + | chr3_3:80729271-80729290 | None:intergenic | 45.0% |
| CAGAAACCCTGGCAAAATTC+AGG | - | chr3_3:80729269-80729288 | Msa0476830:CDS | 45.0% | |
| !! | AGGCAGCACTGACAGAAAAT+AGG | - | chr3_3:80729289-80729308 | Msa0476830:CDS | 45.0% |
| !! | CAGCACTGACAGAAAATAGG+AGG | - | chr3_3:80729292-80729311 | Msa0476830:CDS | 45.0% |
| ! | GCACTGACAGAAAATAGGAG+GGG | - | chr3_3:80729294-80729313 | Msa0476830:CDS | 45.0% |
| CACTGACAGAAAATAGGAGG+GGG | - | chr3_3:80729295-80729314 | Msa0476830:CDS | 45.0% | |
| AAGTCCAATGGGTCTGATGA+TGG | - | chr3_3:80729498-80729517 | Msa0476830:CDS | 45.0% | |
| AGTCCAATGGGTCTGATGAT+GGG | - | chr3_3:80729499-80729518 | Msa0476830:CDS | 45.0% | |
| AATCCCATCATCAGACCCAT+TGG | + | chr3_3:80729505-80729524 | None:intergenic | 45.0% | |
| GCCCAAATTGATGGAGAACA+TGG | - | chr3_3:80729549-80729568 | Msa0476830:intron | 45.0% | |
| GAAACAGCTGCTATGGGATA+AGG | + | chr3_3:80729712-80729731 | None:intergenic | 45.0% | |
| GCCTATTTAGTCAATAGCGG+GGG | - | chr3_3:80729999-80730018 | Msa0476830:intron | 45.0% | |
| ! | ACCCCCGCTATTGACTAAAT+AGG | + | chr3_3:80730003-80730022 | None:intergenic | 45.0% |
| TCTCTGCTGAAGACATCCAA+TGG | + | chr3_3:80730046-80730065 | None:intergenic | 45.0% | |
| AGCAAGAATTTCGGCTGCTA+TGG | + | chr3_3:80730095-80730114 | None:intergenic | 45.0% | |
| GCCACGAACAGCAAGAATTT+CGG | + | chr3_3:80730104-80730123 | None:intergenic | 45.0% | |
| GCCACAATACTGTGCTGTAT+AGG | + | chr3_3:80730605-80730624 | None:intergenic | 45.0% | |
| ATGAGAACCAGCGAGTACAT+TGG | - | chr3_3:80730786-80730805 | Msa0476830:intron | 45.0% | |
| AGGAAAACCAATGTACTCGC+TGG | + | chr3_3:80730796-80730815 | None:intergenic | 45.0% | |
| ATAGCCATGCACCACCAATA+TGG | - | chr3_3:80731023-80731042 | Msa0476830:CDS | 45.0% | |
| !! | TAATAAAAAAAAAAAAATAG+GGG | + | chr3_3:80728006-80728025 | None:intergenic | 5.0% |
| !! | CTAATAAAAAAAAAAAAATA+GGG | + | chr3_3:80728007-80728026 | None:intergenic | 5.0% |
| !! | ACTAATAAAAAAAAAAAAAT+AGG | + | chr3_3:80728008-80728027 | None:intergenic | 5.0% |
| GGGGATTGAGCGAATGATGA+GGG | + | chr3_3:80727781-80727800 | None:intergenic | 50.0% | |
| AGGGGATTGAGCGAATGATG+AGG | + | chr3_3:80727782-80727801 | None:intergenic | 50.0% | |
| TTCTTCTGCAGGTCTTCCGA+TGG | - | chr3_3:80727897-80727916 | Msa0476830:three_prime_UTR | 50.0% | |
| TCTTCTGCAGGTCTTCCGAT+GGG | - | chr3_3:80727898-80727917 | Msa0476830:three_prime_UTR | 50.0% | |
| GCCAAGTTCATCAAGGTTGG+GGG | - | chr3_3:80728579-80728598 | Msa0476830:intron | 50.0% | |
| CCAAGTTCATCAAGGTTGGG+GGG | - | chr3_3:80728580-80728599 | Msa0476830:intron | 50.0% | |
| GATGTTAGTGCCAGAAACCC+TGG | - | chr3_3:80729258-80729277 | Msa0476830:CDS | 50.0% | |
| ! | GTGCTGCCTGAATTTTGCCA+GGG | + | chr3_3:80729278-80729297 | None:intergenic | 50.0% |
| ! | AGTGCTGCCTGAATTTTGCC+AGG | + | chr3_3:80729279-80729298 | None:intergenic | 50.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr3_3:80729800-80729819 | None:intergenic | 50.0% | |
| CTGCTGAAGACATCCAATGG+CGG | + | chr3_3:80730043-80730062 | None:intergenic | 50.0% | |
| !! | GCCGAAATTCTTGCTGTTCG+TGG | - | chr3_3:80730100-80730119 | Msa0476830:intron | 50.0% |
| TAGTTGCTTCTTGCAGCACC+GGG | + | chr3_3:80730749-80730768 | None:intergenic | 50.0% | |
| CTAGTTGCTTCTTGCAGCAC+CGG | + | chr3_3:80730750-80730769 | None:intergenic | 50.0% | |
| CCCCCCAACCTTGATGAACT+TGG | + | chr3_3:80728583-80728602 | None:intergenic | 55.0% | |
| TTCAGCCATAACGTGCCTGC+AGG | - | chr3_3:80729076-80729095 | Msa0476830:intron | 55.0% | |
| TCAGCCATAACGTGCCTGCA+GGG | - | chr3_3:80729077-80729096 | Msa0476830:intron | 55.0% | |
| TTCGCTCAATCCCCTACCCC+TGG | - | chr3_3:80727787-80727806 | Msa0476830:three_prime_UTR | 60.0% | |
| TCGCTCAATCCCCTACCCCT+GGG | - | chr3_3:80727788-80727807 | Msa0476830:three_prime_UTR | 60.0% | |
| GAGTCCCTGCAGGCACGTTA+TGG | + | chr3_3:80729084-80729103 | None:intergenic | 60.0% | |
| AGACATCCAATGGCGGCTGC+CGG | + | chr3_3:80730036-80730055 | None:intergenic | 60.0% | |
| ! | AGCGGGGGTAGCAGAGCATC+CGG | - | chr3_3:80730014-80730033 | Msa0476830:intron | 65.0% |
| GAGCATCCGGCAGCCGCCAT+TGG | - | chr3_3:80730027-80730046 | Msa0476830:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 80727590 | 80731203 | 80727590 | ID=Msa0476830;Name=Msa0476830 |
| chr3_3 | mRNA | 80727590 | 80731203 | 80727590 | ID=Msa0476830-mRNA-1;Parent=Msa0476830;Name=Msa0476830-mRNA-1;_AED=0.36;_eAED=0.36;_QI=122|1|1|1|1|1|7|434|211 |
| chr3_3 | exon | 80727590 | 80728118 | 80727590 | ID=Msa0476830-mRNA-1:exon:22219;Parent=Msa0476830-mRNA-1 |
| chr3_3 | exon | 80729222 | 80729330 | 80729222 | ID=Msa0476830-mRNA-1:exon:22218;Parent=Msa0476830-mRNA-1 |
| chr3_3 | exon | 80729428 | 80729544 | 80729428 | ID=Msa0476830-mRNA-1:exon:22217;Parent=Msa0476830-mRNA-1 |
| chr3_3 | exon | 80729649 | 80729712 | 80729649 | ID=Msa0476830-mRNA-1:exon:22216;Parent=Msa0476830-mRNA-1 |
| chr3_3 | exon | 80729898 | 80730006 | 80729898 | ID=Msa0476830-mRNA-1:exon:22215;Parent=Msa0476830-mRNA-1 |
| chr3_3 | exon | 80730842 | 80730885 | 80730842 | ID=Msa0476830-mRNA-1:exon:22214;Parent=Msa0476830-mRNA-1 |
| chr3_3 | exon | 80730984 | 80731203 | 80730984 | ID=Msa0476830-mRNA-1:exon:22213;Parent=Msa0476830-mRNA-1 |
| chr3_3 | five_prime_UTR | 80731082 | 80731203 | 80731082 | ID=Msa0476830-mRNA-1:five_prime_utr;Parent=Msa0476830-mRNA-1 |
| chr3_3 | CDS | 80730984 | 80731081 | 80730984 | ID=Msa0476830-mRNA-1:cds;Parent=Msa0476830-mRNA-1 |
| chr3_3 | CDS | 80730842 | 80730885 | 80730842 | ID=Msa0476830-mRNA-1:cds;Parent=Msa0476830-mRNA-1 |
| chr3_3 | CDS | 80729898 | 80730006 | 80729898 | ID=Msa0476830-mRNA-1:cds;Parent=Msa0476830-mRNA-1 |
| chr3_3 | CDS | 80729649 | 80729712 | 80729649 | ID=Msa0476830-mRNA-1:cds;Parent=Msa0476830-mRNA-1 |
| chr3_3 | CDS | 80729428 | 80729544 | 80729428 | ID=Msa0476830-mRNA-1:cds;Parent=Msa0476830-mRNA-1 |
| chr3_3 | CDS | 80729222 | 80729330 | 80729222 | ID=Msa0476830-mRNA-1:cds;Parent=Msa0476830-mRNA-1 |
| chr3_3 | CDS | 80728024 | 80728118 | 80728024 | ID=Msa0476830-mRNA-1:cds;Parent=Msa0476830-mRNA-1 |
| chr3_3 | three_prime_UTR | 80727590 | 80728023 | 80727590 | ID=Msa0476830-mRNA-1:three_prime_utr;Parent=Msa0476830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
