Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829120 | XP_003603346.1 | 99.526 | 211 | 0 | 1 | 1 | 211 | 1 | 210 | 3.04e-148 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829120 | sp|Q8VY97|Y4213_ARATH | 74.286 | 175 | 43 | 1 | 33 | 207 | 29 | 201 | 9.10e-84 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829120 | G7JAF8 | 99.526 | 211 | 0 | 1 | 1 | 211 | 1 | 210 | 1.45e-148 | 421 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0432400 | Msa0829120 | 0.981968 | 6.726830e-154 | -8.615850e-47 |
| Msa0476830 | Msa0829120 | 0.996470 | 6.153132e-228 | -8.615850e-47 |
| Msa0521200 | Msa0829120 | 0.980801 | 4.587486e-151 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829120 | MtrunA17_Chr3g0137401 | 99.526 | 211 | 0 | 1 | 1 | 211 | 1 | 210 | 2.80e-152 | 421 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829120 | AT2G25310.1 | 72.637 | 201 | 51 | 2 | 10 | 210 | 13 | 209 | 4.90e-92 | 268 |
| Msa0829120 | AT4G32130.1 | 74.286 | 175 | 43 | 1 | 33 | 207 | 29 | 201 | 9.25e-85 | 249 |
Find 68 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGTATAATTTCTTTATT+TGG | 0.158836 | 5_4:-2073538 | Msa0829120:three_prime_UTR |
| TAATACTGTTCCTCCTTTAA+TGG | 0.168757 | 5_4:+2075262 | None:intergenic |
| ACCCATGTTCTCCATCAATT+TGG | 0.172914 | 5_4:+2075050 | None:intergenic |
| GTCCTCATGCCTAAATTATT+TGG | 0.186235 | 5_4:-2073516 | Msa0829120:three_prime_UTR |
| TGAGCACGTTTCATTTCTTC+TGG | 0.232081 | 5_4:+2073926 | None:intergenic |
| TCCGATGGGTACACTATTTA+TGG | 0.232266 | 5_4:-2076691 | Msa0829120:CDS |
| AATGTCAAAGTTATACTTAA+TGG | 0.264904 | 5_4:-2075773 | Msa0829120:CDS |
| ATTTGGTTTATGATCTGTTT+TGG | 0.300143 | 5_4:-2073499 | Msa0829120:three_prime_UTR |
| TTTCCTTATGCCCAAATTGA+TGG | 0.308008 | 5_4:-2075061 | Msa0829120:CDS |
| GATCATAAACCAAATAATTT+AGG | 0.315950 | 5_4:+2073507 | None:intergenic |
| CTCTGAATATTGGCAATCTA+TGG | 0.334167 | 5_4:-2076910 | Msa0829120:exon |
| AATGTGAAACATACATGAAT+AGG | 0.340448 | 5_4:-2073651 | Msa0829120:three_prime_UTR |
| CAGAAACCCTGGCAAAATTC+AGG | 0.352622 | 5_4:-2075332 | Msa0829120:CDS |
| CCCATGTTCTCCATCAATTT+GGG | 0.365935 | 5_4:+2075051 | None:intergenic |
| AGGCAGCACTGACAGAAAAT+AGG | 0.378833 | 5_4:-2075312 | Msa0829120:CDS |
| TCTCCATCAATTTGGGCATA+AGG | 0.387908 | 5_4:+2075058 | None:intergenic |
| ATGCACCACCAATATGGATA+TGG | 0.393207 | 5_4:-2073574 | Msa0829120:three_prime_UTR |
| ACAAGCAACCATATCCATAT+TGG | 0.425328 | 5_4:+2073566 | None:intergenic |
| ATAGCCATGCACCACCAATA+TGG | 0.426630 | 5_4:-2073580 | Msa0829120:three_prime_UTR |
| GAGTCCCTGCAGGCACGTTA+TGG | 0.435724 | 5_4:+2075520 | None:intergenic |
| CTAGTTGCTTCTTGCAGCAC+CGG | 0.438332 | 5_4:+2073856 | None:intergenic |
| TTCAGCCATAACGTGCCTGC+AGG | 0.459980 | 5_4:-2075525 | Msa0829120:intron |
| TTCGCTCAATCCCCTACCCC+TGG | 0.471489 | 5_4:-2076816 | Msa0829120:CDS |
| TTAATTGAAGTGGCTGCAAA+AGG | 0.475291 | 5_4:-2075495 | Msa0829120:CDS |
| TTCTTCTGCAGGTCTTCCGA+TGG | 0.484478 | 5_4:-2076706 | Msa0829120:intron |
| CAAGAAGAAATGAGAAATCA+AGG | 0.494262 | 5_4:-2073905 | Msa0829120:CDS |
| AAAGGAGGAACAGTATTATG+AGG | 0.495382 | 5_4:-2075257 | Msa0829120:intron |
| AGAAAGCAAGTGCAGTTACA+TGG | 0.495922 | 5_4:+2073625 | None:intergenic |
| TTTACAAGCATTAGCAGGCA+TGG | 0.497892 | 5_4:+2073441 | None:intergenic |
| GGTAACAAGCTTGCTAAAGA+TGG | 0.499603 | 5_4:+2073878 | None:intergenic |
| TATATCTTCAGCTTCTGCTC+AGG | 0.500434 | 5_4:+2073790 | None:intergenic |
| GAAATTGATACCCAGGGGTA+GGG | 0.501096 | 5_4:+2076805 | None:intergenic |
| GCCCAAATTGATGGAGAACA+TGG | 0.506778 | 5_4:-2075052 | Msa0829120:CDS |
| TCCATTGTGAAAAGTCCAAT+GGG | 0.507206 | 5_4:-2075114 | Msa0829120:CDS |
| TACAATGAGAAATATCCATC+AGG | 0.508843 | 5_4:+2075725 | None:intergenic |
| GGGGATTGAGCGAATGATGA+GGG | 0.521949 | 5_4:+2076825 | None:intergenic |
| TGAAAACACACTGATCTGTT+CGG | 0.526487 | 5_4:+2076936 | None:intergenic |
| AAGTCCAATGGGTCTGATGA+TGG | 0.529960 | 5_4:-2075103 | Msa0829120:CDS |
| GTCCATTGTGAAAAGTCCAA+TGG | 0.530848 | 5_4:-2075115 | Msa0829120:CDS |
| AAATTGATACCCAGGGGTAG+GGG | 0.531505 | 5_4:+2076806 | None:intergenic |
| AATCCCATCATCAGACCCAT+TGG | 0.537133 | 5_4:+2075099 | None:intergenic |
| AGTCCAATGGGTCTGATGAT+GGG | 0.541406 | 5_4:-2075102 | Msa0829120:CDS |
| ACAATGGACATAATAGAGAA+TGG | 0.546124 | 5_4:+2075129 | None:intergenic |
| GATGTTAGTGCCAGAAACCC+TGG | 0.551828 | 5_4:-2075343 | Msa0829120:CDS |
| AGGGACTCATTTAATTGAAG+TGG | 0.553198 | 5_4:-2075505 | Msa0829120:CDS |
| CAGCACTGACAGAAAATAGG+AGG | 0.557041 | 5_4:-2075309 | Msa0829120:CDS |
| TCGCTCAATCCCCTACCCCT+GGG | 0.564664 | 5_4:-2076815 | Msa0829120:intron |
| TGAAATTGATACCCAGGGGT+AGG | 0.565785 | 5_4:+2076804 | None:intergenic |
| AGCAACCATATCCATATTGG+TGG | 0.567127 | 5_4:+2073569 | None:intergenic |
| TAGTTGCTTCTTGCAGCACC+GGG | 0.567421 | 5_4:+2073857 | None:intergenic |
| TCAATTAAATGAGTCCCTGC+AGG | 0.577390 | 5_4:+2075510 | None:intergenic |
| AGGGGATTGAGCGAATGATG+AGG | 0.577465 | 5_4:+2076824 | None:intergenic |
| TCTTTAGCAAGCTTGTTACC+CGG | 0.579704 | 5_4:-2073875 | Msa0829120:CDS |
| ATGAGAACCAGCGAGTACAT+TGG | 0.587034 | 5_4:-2073817 | Msa0829120:three_prime_UTR |
| AGGAAAACCAATGTACTCGC+TGG | 0.587347 | 5_4:+2073810 | None:intergenic |
| AATAACAAAATTCTCTATCA+CGG | 0.589670 | 5_4:+2073760 | None:intergenic |
| AAGAAAGAGTGATTTCGTGA+AGG | 0.590259 | 5_4:+2076884 | None:intergenic |
| AACCAAATAATTTAGGCATG+AGG | 0.590752 | 5_4:+2073514 | None:intergenic |
| TCTTCTGCAGGTCTTCCGAT+GGG | 0.594131 | 5_4:-2076705 | Msa0829120:intron |
| ATATCCATATTGGTGGTGCA+TGG | 0.596001 | 5_4:+2073576 | None:intergenic |
| CACTGACAGAAAATAGGAGG+GGG | 0.615655 | 5_4:-2075306 | Msa0829120:CDS |
| GTCAAAGTTATACTTAATGG+TGG | 0.622746 | 5_4:-2075770 | Msa0829120:CDS |
| TCAGCCATAACGTGCCTGCA+GGG | 0.625157 | 5_4:-2075524 | Msa0829120:intron |
| AGCACTGACAGAAAATAGGA+GGG | 0.637222 | 5_4:-2075308 | Msa0829120:CDS |
| ACCATAAATAGTGTACCCAT+CGG | 0.641346 | 5_4:+2076690 | None:intergenic |
| CCCAAATTGATGGAGAACAT+GGG | 0.655293 | 5_4:-2075051 | Msa0829120:intron |
| GCACTGACAGAAAATAGGAG+GGG | 0.661192 | 5_4:-2075307 | Msa0829120:CDS |
| ATCTGTGATTGTATACGCTG+TGG | 0.672240 | 5_4:-2073717 | Msa0829120:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAAAAAAAAAAAAATA+GGG | + | chr5_4:2073839-2073858 | None:intergenic | 0.0% |
| !! | ATTAAAAATCAAATATAAAC+TGG | + | chr5_4:2074099-2074118 | None:intergenic | 10.0% |
| !!! | TATGAAATATTTAGAATTTT+AGG | - | chr5_4:2074118-2074137 | Msa0829120:intron | 10.0% |
| !! | AAGTAAATATAGAATTAAAT+AGG | + | chr5_4:2074804-2074823 | None:intergenic | 10.0% |
| !! | AAAACAAAAAAAAAAATTAG+GGG | + | chr5_4:2075018-2075037 | None:intergenic | 10.0% |
| !! | GAAAACAAAAAAAAAAATTA+GGG | + | chr5_4:2075019-2075038 | None:intergenic | 10.0% |
| !! | AAATTTAAATTCAAGAAAAT+GGG | + | chr5_4:2076004-2076023 | None:intergenic | 10.0% |
| !! | AAAATTTAAATTCAAGAAAA+TGG | + | chr5_4:2076005-2076024 | None:intergenic | 10.0% |
| !!! | TGAATTTAAATTTTAATGTT+CGG | - | chr5_4:2076011-2076030 | Msa0829120:intron | 10.0% |
| !! | ATCGAAAAATTGAAAAATTA+GGG | + | chr5_4:2073668-2073687 | None:intergenic | 15.0% |
| !! | AATCGAAAAATTGAAAAATT+AGG | + | chr5_4:2073669-2073688 | None:intergenic | 15.0% |
| !! | TATTAAATTCGTTAAAATCA+AGG | + | chr5_4:2073707-2073726 | None:intergenic | 15.0% |
| !!! | AATTACAAAAATAGCATTTT+TGG | - | chr5_4:2074289-2074308 | Msa0829120:intron | 15.0% |
| !! | GGAAAACAAAAAAAAAAATT+AGG | + | chr5_4:2075020-2075039 | None:intergenic | 15.0% |
| !!! | TGAATTTGAATTTTCTTATA+GGG | - | chr5_4:2076747-2076766 | Msa0829120:intron | 15.0% |
| !! | CATTGTATAATTTCTTTATT+TGG | - | chr5_4:2076897-2076916 | Msa0829120:exon | 15.0% |
| !! | ATTGAAAAATTAGGGTTTAA+GGG | + | chr5_4:2073660-2073679 | None:intergenic | 20.0% |
| !! | AATTGAAAAATTAGGGTTTA+AGG | + | chr5_4:2073661-2073680 | None:intergenic | 20.0% |
| !! | ATGAATCTTATAATGATGAA+AGG | + | chr5_4:2073798-2073817 | None:intergenic | 20.0% |
| !!! | TTAAACATCAAACATTGATT+GGG | + | chr5_4:2073870-2073889 | None:intergenic | 20.0% |
| !! | ATTAAACATCAAACATTGAT+TGG | + | chr5_4:2073871-2073890 | None:intergenic | 20.0% |
| !! | AATGTCAAAGTTATACTTAA+TGG | - | chr5_4:2074662-2074681 | Msa0829120:intron | 20.0% |
| !! | GAAATAAAGTTGTAAATCAA+AGG | + | chr5_4:2074737-2074756 | None:intergenic | 20.0% |
| !!! | TAATTTGCATGAAAACTTTT+TGG | - | chr5_4:2074767-2074786 | Msa0829120:intron | 20.0% |
| !!! | AATTTGCATGAAAACTTTTT+GGG | - | chr5_4:2074768-2074787 | Msa0829120:intron | 20.0% |
| !!! | TACTTATTTTGTTTTGCTTT+TGG | - | chr5_4:2074819-2074838 | Msa0829120:intron | 20.0% |
| !!! | ACTTATTTTGTTTTGCTTTT+GGG | - | chr5_4:2074820-2074839 | Msa0829120:intron | 20.0% |
| !!! | AAGTTATAGTTGATTGATTT+TGG | - | chr5_4:2074843-2074862 | Msa0829120:intron | 20.0% |
| !! | ACATTCAGATAATAATCTTA+AGG | + | chr5_4:2075248-2075267 | None:intergenic | 20.0% |
| !! | AAATGAAAGAAGTTTATAGA+TGG | + | chr5_4:2075425-2075444 | None:intergenic | 20.0% |
| !!! | TCAAAAATGTAAAAGTATAC+TGG | + | chr5_4:2076258-2076277 | None:intergenic | 20.0% |
| !! | AATAACAAAATTCTCTATCA+CGG | + | chr5_4:2076678-2076697 | None:intergenic | 20.0% |
| !!! | GAATTTTGTTATTAACAAGT+TGG | - | chr5_4:2076685-2076704 | Msa0829120:CDS | 20.0% |
| !!! | CTGAATTTGAATTTTCTTAT+AGG | - | chr5_4:2076746-2076765 | Msa0829120:intron | 20.0% |
| !! | GATCATAAACCAAATAATTT+AGG | + | chr5_4:2076931-2076950 | None:intergenic | 20.0% |
| !!! | TTTCAATTTTTCGATTGCAT+CGG | - | chr5_4:2073673-2073692 | Msa0829120:three_prime_UTR | 25.0% |
| ! | AATTTAATAACTTCTTCTGC+AGG | - | chr5_4:2073718-2073737 | Msa0829120:three_prime_UTR | 25.0% |
| ! | ATCTTATAATGATGAAAGGT+GGG | + | chr5_4:2073794-2073813 | None:intergenic | 25.0% |
| ! | AATCTTATAATGATGAAAGG+TGG | + | chr5_4:2073795-2073814 | None:intergenic | 25.0% |
| !! | TTTTAGGCTAAAACAATGTT+TGG | - | chr5_4:2074134-2074153 | Msa0829120:intron | 25.0% |
| ! | TAAAAACAAAATAGTGCACA+AGG | + | chr5_4:2074204-2074223 | None:intergenic | 25.0% |
| !!! | AAATAGCATTTTTGGTTTCA+TGG | - | chr5_4:2074297-2074316 | Msa0829120:intron | 25.0% |
| !! | CCTATATAACTCTTTGAAAA+TGG | + | chr5_4:2074328-2074347 | None:intergenic | 25.0% |
| !! | CCATTTTCAAAGAGTTATAT+AGG | - | chr5_4:2074325-2074344 | Msa0829120:intron | 25.0% |
| !! | CATGGATTTTCTATAAATGT+TGG | - | chr5_4:2074546-2074565 | Msa0829120:intron | 25.0% |
| !! | TATAAATGTTGGTTGTATGA+TGG | - | chr5_4:2074557-2074576 | Msa0829120:intron | 25.0% |
| !! | ATTTGCATGAAAACTTTTTG+GGG | - | chr5_4:2074769-2074788 | Msa0829120:intron | 25.0% |
| ! | TTTAATACATGAGCAAACAT+AGG | + | chr5_4:2075041-2075060 | None:intergenic | 25.0% |
| ! | TTATTGTGTCCATTAACAAA+AGG | - | chr5_4:2075061-2075080 | Msa0829120:CDS | 25.0% |
| ! | GATAATAATCTTAAGGAATG+TGG | + | chr5_4:2075241-2075260 | None:intergenic | 25.0% |
| !!! | ATCTTGTTTTTCTACAGATT+AGG | - | chr5_4:2075280-2075299 | Msa0829120:CDS | 25.0% |
| !!! | TCTTGTTTTTCTACAGATTA+GGG | - | chr5_4:2075281-2075300 | Msa0829120:CDS | 25.0% |
| !!! | GTTTATAGATGGATTTTAGA+AGG | + | chr5_4:2075414-2075433 | None:intergenic | 25.0% |
| ! | ACAAATAAGAAAAACTCGAA+AGG | + | chr5_4:2075448-2075467 | None:intergenic | 25.0% |
| !!! | TTTCTTATTTGTTGTCTATG+TGG | - | chr5_4:2075456-2075475 | Msa0829120:intron | 25.0% |
| ! | AAATGATTACTCATTACCTT+AGG | - | chr5_4:2075501-2075520 | Msa0829120:CDS | 25.0% |
| ! | GTTTCATAAAATTCTACCTA+AGG | + | chr5_4:2075520-2075539 | None:intergenic | 25.0% |
| !!! | TTAGGGAGAGAAATTTTTTT+TGG | + | chr5_4:2075674-2075693 | None:intergenic | 25.0% |
| !! | TCATTAATAAGAGCACATTA+GGG | + | chr5_4:2075691-2075710 | None:intergenic | 25.0% |
| ! | GTTAAAAAATCACAATCATG+AGG | - | chr5_4:2075780-2075799 | Msa0829120:CDS | 25.0% |
| ! | GCAAAACATAGAAGAAAATA+CGG | + | chr5_4:2076181-2076200 | None:intergenic | 25.0% |
| ! | TATGTATTGCAAACTTCTAA+GGG | + | chr5_4:2076289-2076308 | None:intergenic | 25.0% |
| ! | AATGTGAAACATACATGAAT+AGG | - | chr5_4:2076784-2076803 | Msa0829120:intron | 25.0% |
| !!! | ATTTGGTTTATGATCTGTTT+TGG | - | chr5_4:2076936-2076955 | Msa0829120:five_prime_UTR | 25.0% |
| ! | GTTTTCACAACTCTGAATAT+TGG | - | chr5_4:2073515-2073534 | Msa0829120:three_prime_UTR | 30.0% |
| ATTGATTATTGCATCCTTGA+TGG | - | chr5_4:2073986-2074005 | Msa0829120:intron | 30.0% | |
| TTGATTATTGCATCCTTGAT+GGG | - | chr5_4:2073987-2074006 | Msa0829120:intron | 30.0% | |
| ! | ACTGATAATGCATTAAAGCA+TGG | + | chr5_4:2074180-2074199 | None:intergenic | 30.0% |
| ! | CAACAAACTAAGAGTATGTT+TGG | - | chr5_4:2074236-2074255 | Msa0829120:intron | 30.0% |
| AGTTAATGATTTAGCTATCC+AGG | - | chr5_4:2074438-2074457 | Msa0829120:intron | 30.0% | |
| ! | ATCTATTTTGTGAGGATACA+TGG | - | chr5_4:2074528-2074547 | Msa0829120:intron | 30.0% |
| !! | TTGACATTTGAAACTTTTGC+AGG | + | chr5_4:2074650-2074669 | None:intergenic | 30.0% |
| GTCAAAGTTATACTTAATGG+TGG | - | chr5_4:2074665-2074684 | Msa0829120:intron | 30.0% | |
| TACAATGAGAAATATCCATC+AGG | + | chr5_4:2074713-2074732 | None:intergenic | 30.0% | |
| ! | TTTTCATGCAAATTATGAGC+AGG | + | chr5_4:2074762-2074781 | None:intergenic | 30.0% |
| !!! | GTTTGTTTTAGAGCCATTAA+AGG | - | chr5_4:2075160-2075179 | Msa0829120:intron | 30.0% |
| TAATACTGTTCCTCCTTTAA+TGG | + | chr5_4:2075176-2075195 | None:intergenic | 30.0% | |
| TAATCTTAAGGAATGTGGAA+AGG | + | chr5_4:2075236-2075255 | None:intergenic | 30.0% | |
| ACAATGGACATAATAGAGAA+TGG | + | chr5_4:2075309-2075328 | None:intergenic | 30.0% | |
| !!! | GAGAAATTTTTTTTGGAGCA+TGG | + | chr5_4:2075667-2075686 | None:intergenic | 30.0% |
| ! | CTCATTAATAAGAGCACATT+AGG | + | chr5_4:2075692-2075711 | None:intergenic | 30.0% |
| ! | GTCCTATTTGAAATACTTTG+TGG | - | chr5_4:2075711-2075730 | Msa0829120:intron | 30.0% |
| ! | GACCACAAAGTATTTCAAAT+AGG | + | chr5_4:2075716-2075735 | None:intergenic | 30.0% |
| ATAAACAAAGCACAGCTTAT+GGG | + | chr5_4:2075740-2075759 | None:intergenic | 30.0% | |
| AATAAACAAAGCACAGCTTA+TGG | + | chr5_4:2075741-2075760 | None:intergenic | 30.0% | |
| TAAGCCTATTTAGTCAATAG+CGG | - | chr5_4:2075828-2075847 | Msa0829120:intron | 30.0% | |
| TAACAAACATGTGAGAAACA+AGG | + | chr5_4:2076128-2076147 | None:intergenic | 30.0% | |
| GTATGTATTGCAAACTTCTA+AGG | + | chr5_4:2076290-2076309 | None:intergenic | 30.0% | |
| CATTTCATCACACGAAATTA+TGG | + | chr5_4:2076361-2076380 | None:intergenic | 30.0% | |
| CATAATTTCGTGTGATGAAA+TGG | - | chr5_4:2076359-2076378 | Msa0829120:intron | 30.0% | |
| CTCATATCTTGAATGTATTG+TGG | - | chr5_4:2076476-2076495 | Msa0829120:intron | 30.0% | |
| CAAGAAGAAATGAGAAATCA+AGG | - | chr5_4:2076530-2076549 | Msa0829120:intron | 30.0% | |
| AACCAAATAATTTAGGCATG+AGG | + | chr5_4:2076924-2076943 | None:intergenic | 30.0% | |
| !!! | CATTTTTTACAAGCATTAGC+AGG | + | chr5_4:2077002-2077021 | None:intergenic | 30.0% |
| TGAAAACACACTGATCTGTT+CGG | + | chr5_4:2073502-2073521 | None:intergenic | 35.0% | |
| CTCTGAATATTGGCAATCTA+TGG | - | chr5_4:2073525-2073544 | Msa0829120:three_prime_UTR | 35.0% | |
| AAGAAAGAGTGATTTCGTGA+AGG | + | chr5_4:2073554-2073573 | None:intergenic | 35.0% | |
| GATATGAAATTGATACCCAG+GGG | + | chr5_4:2073638-2073657 | None:intergenic | 35.0% | |
| GGATATGAAATTGATACCCA+GGG | + | chr5_4:2073639-2073658 | None:intergenic | 35.0% | |
| ACCATAAATAGTGTACCCAT+CGG | + | chr5_4:2073748-2073767 | None:intergenic | 35.0% | |
| !! | TCATAGTACATGATTTGCTG+TGG | - | chr5_4:2073956-2073975 | Msa0829120:intron | 35.0% |
| CAAGGATGCAATAATCAATC+AGG | + | chr5_4:2073985-2074004 | None:intergenic | 35.0% | |
| ACTGGCAAAAACTTTAAACC+AGG | + | chr5_4:2074081-2074100 | None:intergenic | 35.0% | |
| ! | CCTTGATCAGATTTTTCTAG+CGG | - | chr5_4:2074380-2074399 | Msa0829120:intron | 35.0% |
| !! | TAGTTTTGCCAAGTTCATCA+AGG | - | chr5_4:2074406-2074425 | Msa0829120:intron | 35.0% |
| GTAGTGTGCATTTGTGAATA+CGG | + | chr5_4:2074496-2074515 | None:intergenic | 35.0% | |
| ACAAAATAGATGCACAACGA+CGG | + | chr5_4:2074519-2074538 | None:intergenic | 35.0% | |
| ! | ATGGTATCACTGGATCTTTT+TGG | - | chr5_4:2074595-2074614 | Msa0829120:intron | 35.0% |
| ! | GTCAAAGAGTTTCTTTTCTG+AGG | - | chr5_4:2074687-2074706 | Msa0829120:intron | 35.0% |
| AGGGACTCATTTAATTGAAG+TGG | - | chr5_4:2074930-2074949 | Msa0829120:intron | 35.0% | |
| TTAATTGAAGTGGCTGCAAA+AGG | - | chr5_4:2074940-2074959 | Msa0829120:intron | 35.0% | |
| TTTCCAAATTGAGTACTCAC+TGG | + | chr5_4:2074979-2074998 | None:intergenic | 35.0% | |
| ! | CAACTCGTACCTTTTGTTAA+TGG | + | chr5_4:2075073-2075092 | None:intergenic | 35.0% |
| !!! | TGTTTTAGAGCCATTAAAGG+AGG | - | chr5_4:2075163-2075182 | Msa0829120:intron | 35.0% |
| AAAGGAGGAACAGTATTATG+AGG | - | chr5_4:2075178-2075197 | Msa0829120:intron | 35.0% | |
| TCCATTGTGAAAAGTCCAAT+GGG | - | chr5_4:2075321-2075340 | Msa0829120:CDS | 35.0% | |
| TTTCCTTATGCCCAAATTGA+TGG | - | chr5_4:2075374-2075393 | Msa0829120:intron | 35.0% | |
| AAAACAGAAACAGCTGCTAT+GGG | + | chr5_4:2075552-2075571 | None:intergenic | 35.0% | |
| TAAACAAAGCACAGCTTATG+GGG | + | chr5_4:2075739-2075758 | None:intergenic | 35.0% | |
| ! | TATGCATCTTGTGTGCTTTT+GGG | - | chr5_4:2075803-2075822 | Msa0829120:CDS | 35.0% |
| AAGCCTATTTAGTCAATAGC+GGG | - | chr5_4:2075829-2075848 | Msa0829120:intron | 35.0% | |
| ! | GACTTCTATGTTTCGAGTAT+CGG | - | chr5_4:2076212-2076231 | Msa0829120:intron | 35.0% |
| AAGTATACTGGACATAGAAG+AGG | + | chr5_4:2076246-2076265 | None:intergenic | 35.0% | |
| TCATACTGTTTCAGAGATGA+TGG | + | chr5_4:2076388-2076407 | None:intergenic | 35.0% | |
| !! | CATCTCTGAAACAGTATGAA+TGG | - | chr5_4:2076389-2076408 | Msa0829120:intron | 35.0% |
| ACAAGCAACCATATCCATAT+TGG | + | chr5_4:2076872-2076891 | None:intergenic | 35.0% | |
| GTCCTCATGCCTAAATTATT+TGG | - | chr5_4:2076919-2076938 | Msa0829120:five_prime_UTR | 35.0% | |
| GGGATATGAAATTGATACCC+AGG | + | chr5_4:2073640-2073659 | None:intergenic | 40.0% | |
| TCCGATGGGTACACTATTTA+TGG | - | chr5_4:2073744-2073763 | Msa0829120:three_prime_UTR | 40.0% | |
| TGAAAGGTGGGAACTTACTA+GGG | + | chr5_4:2073782-2073801 | None:intergenic | 40.0% | |
| ATGAAAGGTGGGAACTTACT+AGG | + | chr5_4:2073783-2073802 | None:intergenic | 40.0% | |
| TGAACTTCGATCAGTAAACG+AGG | - | chr5_4:2073927-2073946 | Msa0829120:CDS | 40.0% | |
| TCCTTGATGGGACTGTTAAT+CGG | - | chr5_4:2073999-2074018 | Msa0829120:intron | 40.0% | |
| CTTTCAAGCACAGTCAATTC+AGG | + | chr5_4:2074055-2074074 | None:intergenic | 40.0% | |
| CCGCTAGAAAAATCTGATCA+AGG | + | chr5_4:2074383-2074402 | None:intergenic | 40.0% | |
| TTTGCCAAGTTCATCAAGGT+TGG | - | chr5_4:2074410-2074429 | Msa0829120:intron | 40.0% | |
| TTGCCAAGTTCATCAAGGTT+GGG | - | chr5_4:2074411-2074430 | Msa0829120:intron | 40.0% | |
| AACTTTGACAGTTCAACTCC+TGG | + | chr5_4:2074459-2074478 | None:intergenic | 40.0% | |
| CAAAATAGATGCACAACGAC+GGG | + | chr5_4:2074518-2074537 | None:intergenic | 40.0% | |
| ! | CGTTGTGCATCTATTTTGTG+AGG | - | chr5_4:2074520-2074539 | Msa0829120:intron | 40.0% |
| ATGGTATCGCTGGAGTATAA+TGG | - | chr5_4:2074576-2074595 | Msa0829120:intron | 40.0% | |
| CTGGAGTATAATGGTATCAC+TGG | - | chr5_4:2074585-2074604 | Msa0829120:intron | 40.0% | |
| !! | TATCACTGGATCTTTTTGGC+AGG | - | chr5_4:2074599-2074618 | Msa0829120:intron | 40.0% |
| !! | TGGATCTTTTTGGCAGGTTT+TGG | - | chr5_4:2074605-2074624 | Msa0829120:intron | 40.0% |
| AGCATTCACGTTAAGGAACT+TGG | + | chr5_4:2074890-2074909 | None:intergenic | 40.0% | |
| TCAATTAAATGAGTCCCTGC+AGG | + | chr5_4:2074928-2074947 | None:intergenic | 40.0% | |
| TCTCCAGTGAGTACTCAATT+TGG | - | chr5_4:2074973-2074992 | Msa0829120:intron | 40.0% | |
| !! | AGCACTGACAGAAAATAGGA+GGG | - | chr5_4:2075127-2075146 | Msa0829120:CDS | 40.0% |
| GAGGAACAGTATTATGAGGT+TGG | - | chr5_4:2075182-2075201 | Msa0829120:intron | 40.0% | |
| ATGTGGAAAGGAACACAAAC+AGG | + | chr5_4:2075224-2075243 | None:intergenic | 40.0% | |
| GTCCATTGTGAAAAGTCCAA+TGG | - | chr5_4:2075320-2075339 | Msa0829120:CDS | 40.0% | |
| ! | ACCCATTGGACTTTTCACAA+TGG | + | chr5_4:2075325-2075344 | None:intergenic | 40.0% |
| TCTCCATCAATTTGGGCATA+AGG | + | chr5_4:2075380-2075399 | None:intergenic | 40.0% | |
| CCCATGTTCTCCATCAATTT+GGG | + | chr5_4:2075387-2075406 | None:intergenic | 40.0% | |
| CCCAAATTGATGGAGAACAT+GGG | - | chr5_4:2075384-2075403 | Msa0829120:intron | 40.0% | |
| ACCCATGTTCTCCATCAATT+TGG | + | chr5_4:2075388-2075407 | None:intergenic | 40.0% | |
| CAAAACAGAAACAGCTGCTA+TGG | + | chr5_4:2075553-2075572 | None:intergenic | 40.0% | |
| GAGAGAGGAAGAAAGATAAG+AGG | + | chr5_4:2075621-2075640 | None:intergenic | 40.0% | |
| !!! | TTTTTTTGGAGCATGGAGAG+AGG | + | chr5_4:2075660-2075679 | None:intergenic | 40.0% |
| AAACAAAGCACAGCTTATGG+GGG | + | chr5_4:2075738-2075757 | None:intergenic | 40.0% | |
| ! | GTATGCATCTTGTGTGCTTT+TGG | - | chr5_4:2075802-2075821 | Msa0829120:CDS | 40.0% |
| AGCCTATTTAGTCAATAGCG+GGG | - | chr5_4:2075830-2075849 | Msa0829120:intron | 40.0% | |
| ! | TGAGCATTTGAGTTTCACAG+AGG | + | chr5_4:2075958-2075977 | None:intergenic | 40.0% |
| ACTCGAAACATAGAAGTCAC+AGG | + | chr5_4:2076210-2076229 | None:intergenic | 40.0% | |
| ACCTATACAGCACAGTATTG+TGG | - | chr5_4:2076433-2076452 | Msa0829120:intron | 40.0% | |
| TGAGCACGTTTCATTTCTTC+TGG | + | chr5_4:2076512-2076531 | None:intergenic | 40.0% | |
| !! | GGTAACAAGCTTGCTAAAGA+TGG | + | chr5_4:2076560-2076579 | None:intergenic | 40.0% |
| !! | TCTTTAGCAAGCTTGTTACC+CGG | - | chr5_4:2076560-2076579 | Msa0829120:intron | 40.0% |
| TATATCTTCAGCTTCTGCTC+AGG | + | chr5_4:2076648-2076667 | None:intergenic | 40.0% | |
| ATCTGTGATTGTATACGCTG+TGG | - | chr5_4:2076718-2076737 | Msa0829120:intron | 40.0% | |
| AGAAAGCAAGTGCAGTTACA+TGG | + | chr5_4:2076813-2076832 | None:intergenic | 40.0% | |
| !! | ATATCCATATTGGTGGTGCA+TGG | + | chr5_4:2076862-2076881 | None:intergenic | 40.0% |
| ATGCACCACCAATATGGATA+TGG | - | chr5_4:2076861-2076880 | Msa0829120:CDS | 40.0% | |
| AGCAACCATATCCATATTGG+TGG | + | chr5_4:2076869-2076888 | None:intergenic | 40.0% | |
| !!! | ATGATCTGTTTTGGCTGCAT+TGG | - | chr5_4:2076945-2076964 | Msa0829120:five_prime_UTR | 40.0% |
| TTTACAAGCATTAGCAGGCA+TGG | + | chr5_4:2076997-2077016 | None:intergenic | 40.0% | |
| AAATTGATACCCAGGGGTAG+GGG | + | chr5_4:2073632-2073651 | None:intergenic | 45.0% | |
| GAAATTGATACCCAGGGGTA+GGG | + | chr5_4:2073633-2073652 | None:intergenic | 45.0% | |
| TGAAATTGATACCCAGGGGT+AGG | + | chr5_4:2073634-2073653 | None:intergenic | 45.0% | |
| ACCGATTAACAGTCCCATCA+AGG | + | chr5_4:2074003-2074022 | None:intergenic | 45.0% | |
| GACTGTGCTTGAAAGTTACC+TGG | - | chr5_4:2074060-2074079 | Msa0829120:intron | 45.0% | |
| TGCCAAGTTCATCAAGGTTG+GGG | - | chr5_4:2074412-2074431 | Msa0829120:intron | 45.0% | |
| TGGTTGTATGATGGTATCGC+TGG | - | chr5_4:2074566-2074585 | Msa0829120:intron | 45.0% | |
| !!! | GTTTCTTTTCTGAGGCCTGA+TGG | - | chr5_4:2074695-2074714 | Msa0829120:intron | 45.0% |
| !! | GGCTGAAAGCATTCACGTTA+AGG | + | chr5_4:2074897-2074916 | None:intergenic | 45.0% |
| ! | CTGAATTTTGCCAGGGTTTC+TGG | + | chr5_4:2075105-2075124 | None:intergenic | 45.0% |
| CAGAAACCCTGGCAAAATTC+AGG | - | chr5_4:2075103-2075122 | Msa0829120:CDS | 45.0% | |
| !! | AGGCAGCACTGACAGAAAAT+AGG | - | chr5_4:2075123-2075142 | Msa0829120:CDS | 45.0% |
| !! | CAGCACTGACAGAAAATAGG+AGG | - | chr5_4:2075126-2075145 | Msa0829120:CDS | 45.0% |
| ! | GCACTGACAGAAAATAGGAG+GGG | - | chr5_4:2075128-2075147 | Msa0829120:CDS | 45.0% |
| CACTGACAGAAAATAGGAGG+GGG | - | chr5_4:2075129-2075148 | Msa0829120:CDS | 45.0% | |
| AAGTCCAATGGGTCTGATGA+TGG | - | chr5_4:2075332-2075351 | Msa0829120:CDS | 45.0% | |
| AGTCCAATGGGTCTGATGAT+GGG | - | chr5_4:2075333-2075352 | Msa0829120:CDS | 45.0% | |
| AATCCCATCATCAGACCCAT+TGG | + | chr5_4:2075339-2075358 | None:intergenic | 45.0% | |
| GCCCAAATTGATGGAGAACA+TGG | - | chr5_4:2075383-2075402 | Msa0829120:intron | 45.0% | |
| GAAACAGCTGCTATGGGATA+AGG | + | chr5_4:2075546-2075565 | None:intergenic | 45.0% | |
| GCCTATTTAGTCAATAGCGG+GGG | - | chr5_4:2075831-2075850 | Msa0829120:intron | 45.0% | |
| ! | ACCCCCGCTATTGACTAAAT+AGG | + | chr5_4:2075835-2075854 | None:intergenic | 45.0% |
| TCTCTGCTGAAGACATCCAA+TGG | + | chr5_4:2075878-2075897 | None:intergenic | 45.0% | |
| AGCAAGAATTTCGGCTGCTA+TGG | + | chr5_4:2075927-2075946 | None:intergenic | 45.0% | |
| GCCACGAACAGCAAGAATTT+CGG | + | chr5_4:2075936-2075955 | None:intergenic | 45.0% | |
| GCCACAATACTGTGCTGTAT+AGG | + | chr5_4:2076437-2076456 | None:intergenic | 45.0% | |
| ATGAGAACCAGCGAGTACAT+TGG | - | chr5_4:2076618-2076637 | Msa0829120:intron | 45.0% | |
| AGGAAAACCAATGTACTCGC+TGG | + | chr5_4:2076628-2076647 | None:intergenic | 45.0% | |
| ATAGCCATGCACCACCAATA+TGG | - | chr5_4:2076855-2076874 | Msa0829120:CDS | 45.0% | |
| !! | AATAAAAAAAAAAAAAATAG+GGG | + | chr5_4:2073838-2073857 | None:intergenic | 5.0% |
| !! | CTAATAAAAAAAAAAAAAAT+AGG | + | chr5_4:2073840-2073859 | None:intergenic | 5.0% |
| GGGGATTGAGCGAATGATGA+GGG | + | chr5_4:2073613-2073632 | None:intergenic | 50.0% | |
| AGGGGATTGAGCGAATGATG+AGG | + | chr5_4:2073614-2073633 | None:intergenic | 50.0% | |
| TTCTTCTGCAGGTCTTCCGA+TGG | - | chr5_4:2073729-2073748 | Msa0829120:three_prime_UTR | 50.0% | |
| TCTTCTGCAGGTCTTCCGAT+GGG | - | chr5_4:2073730-2073749 | Msa0829120:three_prime_UTR | 50.0% | |
| GCCAAGTTCATCAAGGTTGG+GGG | - | chr5_4:2074413-2074432 | Msa0829120:intron | 50.0% | |
| CCAAGTTCATCAAGGTTGGG+GGG | - | chr5_4:2074414-2074433 | Msa0829120:intron | 50.0% | |
| GATGTTAGTGCCAGAAACCC+TGG | - | chr5_4:2075092-2075111 | Msa0829120:CDS | 50.0% | |
| ! | GTGCTGCCTGAATTTTGCCA+GGG | + | chr5_4:2075112-2075131 | None:intergenic | 50.0% |
| ! | AGTGCTGCCTGAATTTTGCC+AGG | + | chr5_4:2075113-2075132 | None:intergenic | 50.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr5_4:2075634-2075653 | None:intergenic | 50.0% | |
| CTGCTGAAGACATCCAATGG+CGG | + | chr5_4:2075875-2075894 | None:intergenic | 50.0% | |
| !! | GCCGAAATTCTTGCTGTTCG+TGG | - | chr5_4:2075932-2075951 | Msa0829120:intron | 50.0% |
| TAGTTGCTTCTTGCAGCACC+GGG | + | chr5_4:2076581-2076600 | None:intergenic | 50.0% | |
| CTAGTTGCTTCTTGCAGCAC+CGG | + | chr5_4:2076582-2076601 | None:intergenic | 50.0% | |
| CCCCCCAACCTTGATGAACT+TGG | + | chr5_4:2074417-2074436 | None:intergenic | 55.0% | |
| TTCAGCCATAACGTGCCTGC+AGG | - | chr5_4:2074910-2074929 | Msa0829120:intron | 55.0% | |
| TCAGCCATAACGTGCCTGCA+GGG | - | chr5_4:2074911-2074930 | Msa0829120:intron | 55.0% | |
| TTCGCTCAATCCCCTACCCC+TGG | - | chr5_4:2073619-2073638 | Msa0829120:three_prime_UTR | 60.0% | |
| TCGCTCAATCCCCTACCCCT+GGG | - | chr5_4:2073620-2073639 | Msa0829120:three_prime_UTR | 60.0% | |
| GAGTCCCTGCAGGCACGTTA+TGG | + | chr5_4:2074918-2074937 | None:intergenic | 60.0% | |
| AGACATCCAATGGCGGCTGC+CGG | + | chr5_4:2075868-2075887 | None:intergenic | 60.0% | |
| ! | AGCGGGGGTAGCAGAGCATC+CGG | - | chr5_4:2075846-2075865 | Msa0829120:intron | 65.0% |
| GAGCATCCGGCAGCCGCCAT+TGG | - | chr5_4:2075859-2075878 | Msa0829120:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 2073422 | 2077035 | 2073422 | ID=Msa0829120;Name=Msa0829120 |
| chr5_4 | mRNA | 2073422 | 2077035 | 2073422 | ID=Msa0829120-mRNA-1;Parent=Msa0829120;Name=Msa0829120-mRNA-1;_AED=0.12;_eAED=0.12;_QI=122|1|1|1|1|1|7|434|211 |
| chr5_4 | exon | 2073422 | 2073950 | 2073422 | ID=Msa0829120-mRNA-1:exon:621;Parent=Msa0829120-mRNA-1 |
| chr5_4 | exon | 2075052 | 2075160 | 2075052 | ID=Msa0829120-mRNA-1:exon:620;Parent=Msa0829120-mRNA-1 |
| chr5_4 | exon | 2075258 | 2075374 | 2075258 | ID=Msa0829120-mRNA-1:exon:619;Parent=Msa0829120-mRNA-1 |
| chr5_4 | exon | 2075479 | 2075542 | 2075479 | ID=Msa0829120-mRNA-1:exon:618;Parent=Msa0829120-mRNA-1 |
| chr5_4 | exon | 2075728 | 2075836 | 2075728 | ID=Msa0829120-mRNA-1:exon:617;Parent=Msa0829120-mRNA-1 |
| chr5_4 | exon | 2076674 | 2076717 | 2076674 | ID=Msa0829120-mRNA-1:exon:616;Parent=Msa0829120-mRNA-1 |
| chr5_4 | exon | 2076816 | 2077035 | 2076816 | ID=Msa0829120-mRNA-1:exon:615;Parent=Msa0829120-mRNA-1 |
| chr5_4 | five_prime_UTR | 2076914 | 2077035 | 2076914 | ID=Msa0829120-mRNA-1:five_prime_utr;Parent=Msa0829120-mRNA-1 |
| chr5_4 | CDS | 2076816 | 2076913 | 2076816 | ID=Msa0829120-mRNA-1:cds;Parent=Msa0829120-mRNA-1 |
| chr5_4 | CDS | 2076674 | 2076717 | 2076674 | ID=Msa0829120-mRNA-1:cds;Parent=Msa0829120-mRNA-1 |
| chr5_4 | CDS | 2075728 | 2075836 | 2075728 | ID=Msa0829120-mRNA-1:cds;Parent=Msa0829120-mRNA-1 |
| chr5_4 | CDS | 2075479 | 2075542 | 2075479 | ID=Msa0829120-mRNA-1:cds;Parent=Msa0829120-mRNA-1 |
| chr5_4 | CDS | 2075258 | 2075374 | 2075258 | ID=Msa0829120-mRNA-1:cds;Parent=Msa0829120-mRNA-1 |
| chr5_4 | CDS | 2075052 | 2075160 | 2075052 | ID=Msa0829120-mRNA-1:cds;Parent=Msa0829120-mRNA-1 |
| chr5_4 | CDS | 2073856 | 2073950 | 2073856 | ID=Msa0829120-mRNA-1:cds;Parent=Msa0829120-mRNA-1 |
| chr5_4 | three_prime_UTR | 2073422 | 2073855 | 2073422 | ID=Msa0829120-mRNA-1:three_prime_utr;Parent=Msa0829120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
