AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0432870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432870 MtrunA17_Chr3g0138281 98.425 381 5 1 1 380 1 381 0.0 771
Msa0432870 MtrunA17_Chr4g0065141 58.689 305 123 2 75 376 79 383 1.21e-128 374
Msa0432870 MtrunA17_Chr5g0407161 54.276 304 136 2 73 376 77 377 8.22e-114 337
Msa0432870 MtrunA17_Chr3g0144111 54.417 283 105 3 94 376 1 259 1.31e-99 296
Msa0432870 MtrunA17_Chr1g0194191 46.291 337 156 7 58 376 56 385 1.31e-90 278
Msa0432870 MtrunA17_Chr2g0293811 44.545 330 167 6 61 377 41 367 9.79e-87 267
Msa0432870 MtrunA17_Chr1g0150451 36.667 270 146 8 79 344 75 323 1.21e-40 146
Msa0432870 MtrunA17_Chr1g0150071 31.232 349 172 10 60 355 5 338 1.86e-40 146
Msa0432870 MtrunA17_Chr3g0136811 30.312 353 174 9 58 355 3 338 7.63e-40 145
Msa0432870 MtrunA17_Chr4g0001761 30.938 320 155 7 80 345 22 329 1.17e-39 144
Msa0432870 MtrunA17_Chr1g0171571 34.859 284 151 9 76 345 382 645 2.02e-39 148
Msa0432870 MtrunA17_Chr6g0483411 33.798 287 147 9 87 346 50 320 2.57e-39 142
Msa0432870 MtrunA17_Chr3g0136711 35.926 270 148 8 79 344 32 280 1.03e-38 140
Msa0432870 MtrunA17_Chr4g0068971 46.296 162 75 4 222 376 110 266 1.29e-38 139
Msa0432870 MtrunA17_Chr3g0105371 35.472 265 143 6 89 345 95 339 7.11e-38 139
Msa0432870 MtrunA17_Chr5g0430481 35.316 269 140 7 89 346 131 376 1.11e-37 139
Msa0432870 MtrunA17_Chr1g0212961 35.741 263 142 7 89 348 103 341 1.63e-37 138
Msa0432870 MtrunA17_Chr3g0105351 32.500 320 175 9 36 345 27 315 1.12e-36 135
Msa0432870 MtrunA17_Chr3g0115851 35.593 236 133 5 115 345 61 282 2.61e-35 130
Msa0432870 MtrunA17_Chr3g0126511 33.099 284 164 7 68 347 82 343 6.57e-35 132
Msa0432870 MtrunA17_Chr2g0279151 36.207 232 129 5 119 345 64 281 1.33e-34 129
Msa0432870 MtrunA17_Chr5g0426141 34.241 257 142 6 94 345 48 282 2.63e-34 128
Msa0432870 MtrunA17_Chr4g0050381 33.852 257 143 6 94 345 43 277 1.09e-32 124
Msa0432870 MtrunA17_Chr2g0317021 33.852 257 143 9 94 345 99 333 5.83e-31 120
Msa0432870 MtrunA17_Chr8g0360351 33.195 241 139 7 112 345 57 282 9.35e-29 113
Msa0432870 MtrunA17_Chr2g0299981 29.154 319 160 10 88 347 227 538 3.15e-28 115
Msa0432870 MtrunA17_Chr4g0051661 34.317 271 146 10 82 344 151 397 4.80e-28 113
Msa0432870 MtrunA17_Chr3g0127091 26.910 301 172 7 78 341 57 346 5.60e-28 113
Msa0432870 MtrunA17_Chr4g0070871 30.820 305 155 11 83 342 208 501 6.55e-28 114
Msa0432870 MtrunA17_Chr1g0150781 29.870 308 159 11 89 347 247 546 2.36e-27 113
Msa0432870 MtrunA17_Chr3g0112291 31.801 261 136 7 117 342 120 373 4.25e-27 110
Msa0432870 MtrunA17_Chr1g0158781 33.451 284 151 10 80 342 111 377 5.57e-26 107
Msa0432870 MtrunA17_Chr8g0389921 28.435 313 171 9 83 361 150 443 1.35e-25 107
Msa0432870 MtrunA17_Chr5g0396731 33.981 206 118 4 120 314 107 305 1.44e-25 105
Msa0432870 MtrunA17_Chr5g0435721 33.333 246 121 8 89 312 200 424 8.00e-25 105
Msa0432870 MtrunA17_Chr3g0135961 30.435 276 148 9 109 347 274 542 9.95e-25 105
Msa0432870 MtrunA17_Chr4g0067711 26.774 310 169 12 91 348 53 356 1.76e-18 85.9
Msa0432870 MtrunA17_Chr2g0295401 31.839 223 106 10 122 304 94 310 5.75e-18 84.3
Msa0432870 MtrunA17_Chr7g0263281 27.431 288 148 12 116 347 66 348 6.33e-18 84.3
Msa0432870 MtrunA17_Chr3g0089721 28.400 250 139 6 120 332 68 314 8.00e-18 84.0
Msa0432870 MtrunA17_Chr3g0089711 27.778 252 142 6 118 332 66 314 1.93e-17 82.8
Msa0432870 MtrunA17_Chr1g0211251 27.562 283 144 12 116 342 76 353 2.01e-17 83.2
Msa0432870 MtrunA17_Chr1g0151781 29.289 239 117 9 103 301 56 282 3.12e-17 82.0
Msa0432870 MtrunA17_Chr4g0066371 29.434 265 133 11 120 342 86 338 3.84e-17 82.4
Msa0432870 MtrunA17_Chr7g0256751 27.803 223 127 6 120 308 69 291 9.42e-17 81.3
Msa0432870 MtrunA17_Chr7g0250061 26.014 296 155 12 119 359 75 361 1.35e-16 80.5
Msa0432870 MtrunA17_Chr1g0192421 27.839 273 140 12 120 345 89 351 2.24e-16 79.7
Msa0432870 MtrunA17_Chr1g0213351 26.132 287 150 12 119 349 79 359 4.54e-16 79.0
Msa0432870 MtrunA17_Chr8g0371321 26.459 257 144 10 116 332 74 325 1.03e-15 78.2
Msa0432870 MtrunA17_Chr1g0181901 27.459 244 131 9 104 307 60 297 1.14e-15 77.8
Msa0432870 MtrunA17_Chr7g0243571 27.562 283 145 10 120 348 92 368 1.64e-14 74.7
Msa0432870 MtrunA17_Chr2g0294291 28.685 251 138 10 116 330 70 315 2.49e-14 73.6
Msa0432870 MtrunA17_Chr7g0272061 28.195 266 127 11 120 332 91 345 2.73e-14 73.6
Msa0432870 MtrunA17_Chr7g0249421 35.417 144 69 4 181 306 206 343 3.94e-14 73.6
Msa0432870 MtrunA17_Chr7g0256771 28.634 227 120 7 120 308 70 292 4.69e-14 72.4
Msa0432870 MtrunA17_Chr5g0394181 29.218 243 147 10 120 344 362 597 5.70e-14 73.6
Msa0432870 MtrunA17_Chr7g0238501 26.667 225 126 7 119 304 262 486 3.00e-13 71.2
Msa0432870 MtrunA17_Chr7g0221691 35.172 145 70 5 181 307 231 369 7.05e-13 69.7
Msa0432870 MtrunA17_Chr1g0209451 29.008 262 139 12 119 355 67 306 1.14e-12 68.9
Msa0432870 MtrunA17_Chr1g0187481 21.552 232 142 6 120 344 79 277 1.10e-11 64.7
Msa0432870 MtrunA17_Chr7g0225501 28.906 256 137 13 115 342 79 317 2.21e-11 65.1
Msa0432870 MtrunA17_Chr4g0004971 26.991 226 113 8 118 298 76 294 4.40e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432870 AT2G25620.1 66.410 390 119 4 1 378 1 390 0.0 518
Msa0432870 AT2G25620.2 66.410 390 119 4 1 378 1 390 0.0 518
Msa0432870 AT2G33700.1 48.533 375 169 5 3 376 26 377 5.41e-114 337
Msa0432870 AT3G51470.2 52.427 309 139 3 70 378 17 317 1.20e-109 324
Msa0432870 AT3G51470.1 52.427 309 139 3 70 378 61 361 2.48e-109 325
Msa0432870 AT3G62260.1 47.321 336 161 5 54 376 50 382 2.72e-93 285
Msa0432870 AT3G62260.2 48.889 315 145 5 75 376 72 383 5.04e-92 281
Msa0432870 AT3G62260.3 48.649 296 136 5 94 376 1 293 3.52e-84 258
Msa0432870 AT1G48040.1 45.513 312 158 4 74 375 71 380 7.88e-84 260
Msa0432870 AT3G17250.1 42.587 317 163 7 74 376 110 421 2.59e-73 234
Msa0432870 AT5G24940.1 37.778 270 143 8 79 344 31 279 4.49e-43 155
Msa0432870 AT5G10740.1 38.519 270 141 8 79 344 31 279 8.27e-43 153
Msa0432870 AT5G10740.2 38.519 270 141 8 79 344 31 279 8.27e-43 153
Msa0432870 AT5G53140.1 33.704 270 156 6 80 346 100 349 2.35e-40 148
Msa0432870 AT5G53140.2 33.704 270 156 6 80 346 100 349 2.35e-40 148
Msa0432870 AT4G31750.2 37.407 270 144 8 79 344 31 279 6.43e-40 144
Msa0432870 AT4G31750.1 37.407 270 144 8 79 344 31 279 7.33e-40 144
Msa0432870 AT4G31750.3 37.407 270 144 8 79 344 31 279 7.33e-40 144
Msa0432870 AT2G25070.1 28.977 352 179 9 60 356 5 340 2.41e-39 144
Msa0432870 AT2G25070.2 28.977 352 179 9 60 356 5 340 2.41e-39 144
Msa0432870 AT4G31860.1 30.061 326 161 7 79 349 21 334 6.46e-39 142
Msa0432870 AT1G78200.5 34.241 257 145 4 94 345 1 238 5.95e-38 137
Msa0432870 AT1G78200.4 34.241 257 145 4 94 345 1 238 5.95e-38 137
Msa0432870 AT2G20630.1 33.852 257 143 6 94 345 45 279 8.21e-38 137
Msa0432870 AT2G20630.2 33.594 256 143 6 94 344 45 278 1.46e-37 137
Msa0432870 AT1G78200.1 34.241 257 145 4 94 345 46 283 1.96e-37 137
Msa0432870 AT1G78200.3 34.241 257 145 4 94 345 46 283 1.96e-37 137
Msa0432870 AT1G78200.2 34.241 257 145 4 94 345 46 283 1.96e-37 137
Msa0432870 AT1G18030.1 32.404 287 151 9 87 346 80 350 3.23e-37 138
Msa0432870 AT4G28400.3 34.630 257 141 6 94 345 27 261 3.52e-37 135
Msa0432870 AT4G28400.1 34.630 257 141 6 94 345 49 283 8.52e-37 135
Msa0432870 AT4G31860.3 31.802 283 131 6 79 311 21 291 5.91e-36 133
Msa0432870 AT2G30020.1 34.831 267 146 7 89 346 147 394 1.85e-35 134
Msa0432870 AT1G43900.1 34.191 272 151 8 79 345 121 369 2.16e-35 133
Msa0432870 AT2G40860.4 31.469 286 161 8 74 345 287 551 6.73e-35 135
Msa0432870 AT2G40860.1 32.281 285 154 9 74 342 385 646 8.54e-35 135
Msa0432870 AT1G07160.1 34.717 265 142 8 89 342 130 374 4.53e-34 130
Msa0432870 AT1G22280.1 34.630 257 141 7 94 345 47 281 2.93e-33 125
Msa0432870 AT1G34750.2 34.468 235 134 6 114 342 59 279 6.19e-33 125
Msa0432870 AT1G34750.1 34.468 235 134 6 114 342 59 279 6.19e-33 125
Msa0432870 AT1G34750.3 34.468 235 134 6 114 342 59 279 6.19e-33 125
Msa0432870 AT3G15260.2 34.599 237 134 6 115 345 68 289 1.14e-32 124
Msa0432870 AT3G15260.1 34.599 237 134 6 115 345 68 289 1.14e-32 124
Msa0432870 AT1G67820.2 36.893 206 111 4 119 317 114 307 1.29e-32 127
Msa0432870 AT1G67820.1 36.893 206 111 4 119 317 150 343 2.34e-32 126
Msa0432870 AT2G40180.1 33.455 275 149 8 89 349 136 390 3.63e-32 125
Msa0432870 AT4G31860.2 31.086 267 122 6 79 295 21 275 2.17e-31 120
Msa0432870 AT1G22280.3 33.840 263 141 8 94 345 47 287 6.96e-31 119
Msa0432870 AT2G40860.2 31.273 275 150 9 74 332 385 636 1.47e-30 123
Msa0432870 AT2G29380.1 30.816 331 166 12 50 342 53 358 2.93e-30 119
Msa0432870 AT4G26080.1 31.419 296 150 10 89 342 136 420 3.42e-29 117
Msa0432870 AT1G07430.1 32.411 253 143 8 73 308 114 355 8.02e-29 117
Msa0432870 AT2G34740.1 31.923 260 146 9 94 346 101 336 3.05e-28 113
Msa0432870 AT3G11410.1 33.852 257 130 9 77 308 102 343 6.67e-28 113
Msa0432870 AT5G59220.1 35.021 237 125 7 89 308 119 343 1.56e-27 112
Msa0432870 AT5G51760.2 30.797 276 134 7 117 342 111 379 2.04e-27 112
Msa0432870 AT5G51760.1 30.435 276 135 7 117 342 141 409 2.42e-27 112
Msa0432870 AT1G18030.2 31.646 237 120 8 87 297 80 300 2.59e-27 110
Msa0432870 AT4G27800.1 27.414 321 177 8 80 359 58 363 9.07e-27 110
Msa0432870 AT5G57050.2 29.470 302 153 11 89 342 80 369 1.11e-26 110
Msa0432870 AT5G57050.1 29.470 302 153 11 89 342 120 409 1.16e-26 110
Msa0432870 AT4G28400.2 34.450 209 114 5 94 297 49 239 5.78e-26 105
Msa0432870 AT1G17550.1 32.159 227 111 5 118 311 235 451 2.23e-24 104
Msa0432870 AT1G17550.2 32.159 227 111 5 118 311 235 451 2.23e-24 104
Msa0432870 AT1G72770.4 30.599 317 153 12 89 347 197 504 3.57e-24 104
Msa0432870 AT1G72770.1 30.599 317 153 12 89 347 197 504 3.57e-24 104
Msa0432870 AT1G72770.3 30.599 317 153 12 89 347 197 504 3.57e-24 104
Msa0432870 AT1G34750.4 33.158 190 111 5 114 297 59 238 2.79e-22 95.1
Msa0432870 AT2G34740.2 32.227 211 116 8 94 297 115 305 1.34e-21 94.7
Msa0432870 AT2G34740.3 32.227 211 116 8 94 297 97 287 1.35e-21 94.4
Msa0432870 AT4G27800.2 26.962 293 158 8 80 331 58 335 2.23e-21 94.4
Msa0432870 AT4G27800.3 27.915 283 147 9 80 320 58 325 5.95e-21 92.8
Msa0432870 AT2G40860.3 30.736 231 124 8 74 288 385 595 8.28e-21 94.7
Msa0432870 AT4G08260.1 30.672 238 126 8 111 346 10 210 1.07e-20 89.7
Msa0432870 AT5G59220.2 37.158 183 93 6 89 254 119 296 3.99e-19 87.4
Msa0432870 AT5G02760.1 31.356 236 114 11 119 317 71 295 5.56e-19 87.8
Msa0432870 AT3G12620.2 28.622 283 141 13 116 342 78 355 1.10e-17 84.3
Msa0432870 AT3G12620.1 28.622 283 141 13 116 342 78 355 1.10e-17 84.3
Msa0432870 AT2G20050.1 28.625 269 130 9 120 342 143 395 7.76e-17 82.8
Msa0432870 AT2G20050.2 28.625 269 130 9 120 342 143 395 8.26e-17 82.8
Msa0432870 AT5G01700.1 27.957 279 144 11 118 350 27 294 2.40e-16 79.7
Msa0432870 AT3G16800.2 31.092 238 118 10 106 308 83 309 6.02e-16 79.0
Msa0432870 AT3G16800.1 31.092 238 118 10 106 308 83 309 6.02e-16 79.0
Msa0432870 AT3G16800.3 31.092 238 118 10 106 308 83 309 6.02e-16 79.0
Msa0432870 AT3G55050.1 26.712 292 153 13 110 345 73 359 6.77e-16 79.0
Msa0432870 AT3G55050.2 26.712 292 153 13 110 345 73 359 6.77e-16 79.0
Msa0432870 AT5G01700.2 27.957 279 144 11 118 350 76 343 6.82e-16 79.0
Msa0432870 AT1G47380.1 29.104 268 144 10 115 355 57 305 7.10e-16 79.3
Msa0432870 AT3G16800.4 37.415 147 67 5 181 308 74 214 7.76e-16 77.0
Msa0432870 AT3G16800.6 37.415 147 67 5 181 308 74 214 7.76e-16 77.0
Msa0432870 AT4G33920.1 24.912 285 155 11 118 346 59 340 1.41e-15 77.8
Msa0432870 AT3G05640.2 26.646 319 165 14 80 345 48 350 1.64e-15 77.4
Msa0432870 AT3G05640.1 26.646 319 165 14 80 345 48 350 1.64e-15 77.4
Msa0432870 AT3G05640.3 26.646 319 165 14 80 345 48 350 1.64e-15 77.4
Msa0432870 AT4G32950.1 27.459 244 140 8 101 313 45 282 1.95e-15 77.0
Msa0432870 AT5G57050.3 30.412 194 104 8 89 256 120 308 6.23e-15 75.5
Msa0432870 AT4G38520.2 25.260 289 159 11 110 344 70 355 1.04e-14 75.5
Msa0432870 AT4G38520.1 25.260 289 159 11 110 344 70 355 1.04e-14 75.5
Msa0432870 AT1G09160.2 29.528 254 134 10 115 342 61 295 1.05e-14 75.5
Msa0432870 AT1G09160.1 29.528 254 134 10 115 342 61 295 1.05e-14 75.5
Msa0432870 AT3G17090.1 28.629 248 132 9 119 329 83 322 1.10e-14 75.1
Msa0432870 AT3G63320.2 28.832 274 117 12 149 355 52 314 1.30e-14 75.1
Msa0432870 AT3G17090.2 28.512 242 128 9 119 323 83 316 1.42e-14 74.3
Msa0432870 AT3G51370.1 24.735 283 152 11 116 342 74 351 1.78e-14 74.7
Msa0432870 AT3G51370.3 24.735 283 152 11 116 342 74 351 1.78e-14 74.7
Msa0432870 AT5G27930.1 27.027 259 124 11 120 330 92 333 2.68e-14 73.9
Msa0432870 AT5G27930.2 27.027 259 124 11 120 330 92 333 2.68e-14 73.9
Msa0432870 AT3G63320.1 27.003 337 133 14 122 355 71 397 2.88e-14 74.3
Msa0432870 AT1G22280.2 34.483 145 84 3 94 238 47 180 3.24e-13 68.6
Msa0432870 AT5G26010.1 29.224 219 110 9 122 306 75 282 5.25e-13 69.7
Msa0432870 AT5G66080.1 26.502 283 147 11 116 342 77 354 5.88e-13 70.1
Msa0432870 AT1G79630.6 31.551 187 95 7 181 344 111 287 9.54e-13 69.3
Msa0432870 AT1G79630.3 31.551 187 95 7 181 344 111 287 9.54e-13 69.3
Msa0432870 AT1G79630.4 31.551 187 95 7 181 344 111 287 9.54e-13 69.3
Msa0432870 AT1G79630.5 31.551 187 95 7 181 344 111 287 9.54e-13 69.3
Msa0432870 AT1G79630.2 31.579 190 97 7 181 347 151 330 1.14e-12 69.3
Msa0432870 AT1G79630.7 31.579 190 97 7 181 347 151 330 1.14e-12 69.3
Msa0432870 AT1G72770.2 31.401 207 99 8 89 254 197 401 1.32e-12 68.9
Msa0432870 AT1G72770.5 31.401 207 99 8 89 254 197 401 1.32e-12 68.9
Msa0432870 AT1G16220.1 30.601 183 99 7 146 307 161 336 1.42e-12 69.3
Msa0432870 AT1G79630.8 31.551 187 95 7 181 344 217 393 1.46e-12 69.3
Msa0432870 AT1G79630.1 31.551 187 95 7 181 344 221 397 1.51e-12 69.3
Msa0432870 AT5G19280.1 28.163 245 149 10 121 344 339 577 2.18e-12 68.9
Msa0432870 AT5G06750.3 26.295 251 139 10 118 329 80 323 2.53e-12 68.2
Msa0432870 AT5G06750.1 26.295 251 139 10 118 329 80 323 2.53e-12 68.2
Msa0432870 AT3G02750.2 34.507 142 69 5 181 304 215 350 4.01e-12 67.8
Msa0432870 AT3G02750.1 34.507 142 69 5 181 304 215 350 4.01e-12 67.8
Msa0432870 AT4G32950.2 28.000 225 125 8 101 294 45 263 5.64e-12 66.2
Msa0432870 AT3G16560.3 28.049 164 94 5 179 318 273 436 2.23e-11 65.5
Msa0432870 AT3G16560.1 28.049 164 94 5 179 318 273 436 2.39e-11 65.5
Msa0432870 AT3G16560.4 28.049 164 94 5 179 318 273 436 2.39e-11 65.5
Msa0432870 AT3G16560.2 28.049 164 94 5 179 318 273 436 2.39e-11 65.5

Find 131 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTTACCAAAATTTGAAAA+TGG 0.195453 3_2:-85122787 None:intergenic
GTCGGTGGTCGGTGAGGGTT+TGG 0.228941 3_2:-85122586 None:intergenic
GCGCAAAATCTACAGCATTT+TGG 0.230172 3_2:-85125054 None:intergenic
GCAGCAGCCTCCACCGAATT+TGG 0.237367 3_2:+85125189 Msa0432870:CDS
TCATAGGCTGTGATGGGATT+TGG 0.239926 3_2:+85125017 Msa0432870:CDS
GCATTGGCTACTCTTGTTAT+AGG 0.258949 3_2:+85124423 Msa0432870:CDS
TGAGTTGGCAGAAGTCTTTA+TGG 0.271237 3_2:+85125295 Msa0432870:exon
TATGTATTCATTGACTTTGT+TGG 0.301584 3_2:-85125493 None:intergenic
CTTAATGTTGCTCGAGCTAT+TGG 0.303340 3_2:+85124893 Msa0432870:CDS
GATGGGCCAAGTGCTTTCTA+TGG 0.323951 3_2:+85123732 Msa0432870:CDS
GCAATAGATGGATTAGGATT+TGG 0.325019 3_2:-85122913 None:intergenic
TATCGGGTTCCGGTCAAATA+TGG 0.330817 3_2:+85123650 Msa0432870:CDS
AGTTTCTGACTGTAGGTTGC+TGG 0.335395 3_2:+85124718 Msa0432870:intron
TCCGGAGGATGTGCTGATAT+CGG 0.336894 3_2:+85123633 Msa0432870:CDS
GGGCTCAACAAACATATAGA+TGG 0.357359 3_2:+85123714 Msa0432870:CDS
CATAGGCTGTGATGGGATTT+GGG 0.362692 3_2:+85125018 Msa0432870:CDS
TGTTACTTGTTAGGTGTAGT+AGG 0.391570 3_2:+85125384 Msa0432870:three_prime_UTR
GAGCGTGGCGCTACCAAATT+CGG 0.397152 3_2:-85125202 None:intergenic
CATCCTCCGGAACGGAGCTT+TGG 0.398949 3_2:-85123621 None:intergenic
TCGGTGGTCGGTGAGGGTTT+GGG 0.400048 3_2:-85122585 None:intergenic
CTTTCATGCAACCTGGTTTG+TGG 0.400398 3_2:-85124811 None:intergenic
TTCCTTCCAAAGCTCCGTTC+CGG 0.404057 3_2:+85123615 Msa0432870:CDS
CTCTGCTCTTTCATGCAACC+TGG 0.407237 3_2:-85124818 None:intergenic
AACTGTAGGTGTTACTTGTT+AGG 0.410508 3_2:+85125375 Msa0432870:three_prime_UTR
AGTTACCAAAATTTGAAAAT+GGG 0.411806 3_2:-85122786 None:intergenic
AAAAGAGTGTGTTGGGAAAG+AGG 0.414423 3_2:-85122638 None:intergenic
GTCTACGATGGATATCTTAA+CGG 0.416027 3_2:+85124866 Msa0432870:CDS
ATGTGGAGATTTGTTTGAAA+GGG 0.417255 3_2:-85122668 None:intergenic
GCAGAAGCAATAGATGGATT+AGG 0.417848 3_2:-85122919 None:intergenic
CTTCTCTGCTGAAGGTTTGA+AGG 0.419618 3_2:+85125240 Msa0432870:CDS
TGAATCTCAATTCTCATAAG+AGG 0.424835 3_2:-85125347 None:intergenic
CGGTGGTCGGTGGTCGGTGA+GGG 0.425084 3_2:-85122591 None:intergenic
TGGCTTGGTCAGGTGTTTGA+TGG 0.427279 3_2:+85124225 Msa0432870:intron
AGCTGTGTGTAGTAAGGATT+TGG 0.430194 3_2:+85125105 Msa0432870:CDS
CGAAAAGCAGAAGCAATAGA+TGG 0.432400 3_2:-85122925 None:intergenic
ACAAAACCGTCATTATTAGT+TGG 0.432607 3_2:+85125532 Msa0432870:three_prime_UTR
CAGAGGCGTATTGAGGCATC+TGG 0.433389 3_2:+85124836 Msa0432870:CDS
TGACTGTAGGTTGCTGGTGG+TGG 0.438915 3_2:+85124724 Msa0432870:intron
CCGGAGGATGTGCTGATATC+GGG 0.442854 3_2:+85123634 Msa0432870:CDS
CTCAATGCTGCCCTTGCATC+CGG 0.452615 3_2:+85124393 Msa0432870:CDS
TTGCTGGTGGTGGCAAATGC+TGG 0.454788 3_2:+85124734 Msa0432870:CDS
ATGCAGTGGTGCCGGATGCA+AGG 0.459353 3_2:-85124404 None:intergenic
GCAAACAGACTATGCATTTG+CGG 0.463349 3_2:+85124359 Msa0432870:CDS
TTTGAAGAAAAGAGTGTGTT+GGG 0.473612 3_2:-85122645 None:intergenic
AATGTGGAGATTTGTTTGAA+AGG 0.474500 3_2:-85122669 None:intergenic
TGCATCCGGCACCACTGCAT+TGG 0.476188 3_2:+85124407 Msa0432870:CDS
TTTATATGTCGGCGATTCAA+AGG 0.478964 3_2:-85122703 None:intergenic
CGACCCAGCTGTGTGTAGTA+AGG 0.481076 3_2:+85125099 Msa0432870:CDS
TGCAGTGGTGCCGGATGCAA+GGG 0.482277 3_2:-85124403 None:intergenic
CTATATGTTTGTTGAGCCCA+TGG 0.493320 3_2:-85123710 None:intergenic
AAATCCTTACTACACACAGC+TGG 0.494506 3_2:-85125103 None:intergenic
GATGTGCTGATATCGGGTTC+CGG 0.494574 3_2:+85123640 Msa0432870:CDS
CCCGATATCAGCACATCCTC+CGG 0.497125 3_2:-85123634 None:intergenic
TTATCCTCGAGAATGAACTT+TGG 0.503539 3_2:-85124291 None:intergenic
AGTAGCCAATGCAGTGGTGC+CGG 0.504279 3_2:-85124412 None:intergenic
ACTATCCTTTCAATATCCAC+TGG 0.504474 3_2:-85124321 None:intergenic
TCTACGATGGATATCTTAAC+GGG 0.504610 3_2:+85124867 Msa0432870:CDS
ATGGGCCAAGTGCTTTCTAT+GGG 0.507014 3_2:+85123733 Msa0432870:CDS
CACAGGAGCTTCTCTGCTGA+AGG 0.507072 3_2:+85125232 Msa0432870:CDS
TTTCTCATCATAGGCTGTGA+TGG 0.509830 3_2:+85125010 Msa0432870:CDS
TTCTCATCATAGGCTGTGAT+GGG 0.519805 3_2:+85125011 Msa0432870:CDS
GCGGTGGTCGGTGGTCGGTG+AGG 0.520865 3_2:-85122592 None:intergenic
AGAATGACCGTCGTAAATGA+AGG 0.524484 3_2:-85122614 None:intergenic
TTATATGTCGGCGATTCAAA+GGG 0.528456 3_2:-85122702 None:intergenic
TGAGATTCATTTGTAACTGT+AGG 0.533426 3_2:+85125361 Msa0432870:three_prime_UTR
TGCATAGTCTGTTTGCAGAA+AGG 0.536620 3_2:-85124352 None:intergenic
AAAGGGTGGTTTAACAAATG+TGG 0.539391 3_2:-85122685 None:intergenic
ATAGATGGATTAGGATTTGG+AGG 0.539565 3_2:-85122910 None:intergenic
GATAGCTTGGCAAAATGAGT+TGG 0.542677 3_2:+85125280 Msa0432870:exon
TAAATGAAGGCGGTGGTCGG+TGG 0.544330 3_2:-85122601 None:intergenic
GTTTGAAGAAAAGAGTGTGT+TGG 0.546377 3_2:-85122646 None:intergenic
GGCGCTACCAAATTCGGTGG+AGG 0.547224 3_2:-85125196 None:intergenic
TAAAATAAAATTAAACAAGA+AGG 0.548575 3_2:-85125320 None:intergenic
ATTTCCCAGTGGATATTGAA+AGG 0.550709 3_2:+85124316 Msa0432870:CDS
AGACAATTTAGCTGCTGTTG+TGG 0.555071 3_2:+85125156 Msa0432870:CDS
CTTCCAAAGCTCCGTTCCGG+AGG 0.555450 3_2:+85123618 Msa0432870:CDS
TGGCTACTCTTGTTATAGGA+AGG 0.559140 3_2:+85124427 Msa0432870:CDS
CTCCTGTGCACTCTGGAGCG+TGG 0.561216 3_2:-85125217 None:intergenic
CTATCCTTTCAATATCCACT+GGG 0.563023 3_2:-85124320 None:intergenic
GAAAGAGCAGAGGCGTATTG+AGG 0.564348 3_2:+85124829 Msa0432870:CDS
GGCTCAACAAACATATAGAT+GGG 0.564529 3_2:+85123715 Msa0432870:CDS
ATGTCAAGAGACCACAAACC+AGG 0.564828 3_2:+85124800 Msa0432870:CDS
AGAGAAGCTCCTGTGCACTC+TGG 0.567952 3_2:-85125224 None:intergenic
CGCCACGCTCCAGAGTGCAC+AGG 0.568670 3_2:+85125215 Msa0432870:CDS
TGGCACATGGAAGGAATGAA+AGG 0.568858 3_2:+85124920 Msa0432870:CDS
GGTCAGGTGTTTGATGGACA+CGG 0.571598 3_2:+85124231 Msa0432870:intron
TTTCTGCATGGTAAAACAAG+AGG 0.572653 3_2:-85122967 None:intergenic
ATTGGTGACTGGCACATGGA+AGG 0.574252 3_2:+85124911 Msa0432870:CDS
CTCCGGAACGGAGCTTTGGA+AGG 0.575225 3_2:-85123617 None:intergenic
TTCTGACTGTAGGTTGCTGG+TGG 0.579507 3_2:+85124721 Msa0432870:intron
TTTGGGTTTCGAAGATGCAG+TGG 0.581001 3_2:-85122568 None:intergenic
TCGTAAATGAAGGCGGTGGT+CGG 0.582325 3_2:-85122604 None:intergenic
TTGCTCGAGCTATTGGTGAC+TGG 0.582496 3_2:+85124900 Msa0432870:CDS
GAGGACGAATTTCTCATCAT+AGG 0.583587 3_2:+85125001 Msa0432870:CDS
ACACATCCTCCATATTTGAC+CGG 0.585526 3_2:-85123659 None:intergenic
TTTGCCAAAGTTCATTCTCG+AGG 0.590449 3_2:+85124287 Msa0432870:CDS
TATGTCGGCGATTCAAAGGG+TGG 0.591649 3_2:-85122699 None:intergenic
TGAAGGCGGTGGTCGGTGGT+CGG 0.591726 3_2:-85122597 None:intergenic
AGCTATTGGTGACTGGCACA+TGG 0.600561 3_2:+85124907 Msa0432870:CDS
GATACCCCATAGAAAGCACT+TGG 0.603170 3_2:-85123738 None:intergenic
AAGTATCCAACTAATAATGA+CGG 0.607702 3_2:-85125538 None:intergenic
TAGTAAGGATTTGGTTGACG+AGG 0.609723 3_2:+85125114 Msa0432870:CDS
AATCCTTACTACACACAGCT+GGG 0.610272 3_2:-85125102 None:intergenic
GAAGGAATGAAAGGCAAAGA+CGG 0.610967 3_2:+85124929 Msa0432870:CDS
GCTTTGGAAGGAAATCAGAC+TGG 0.619255 3_2:-85123605 None:intergenic
AGGCGTATTGAGGCATCTGG+AGG 0.620598 3_2:+85124839 Msa0432870:CDS
CGGGTTCCGGTCAAATATGG+AGG 0.621074 3_2:+85123653 Msa0432870:CDS
CGAGCAGTGTTGTGCCGTCG+TGG 0.624108 3_2:+85124764 Msa0432870:CDS
AGTTCAGGCTCTGCACTGAG+TGG 0.625933 3_2:-85124956 None:intergenic
CGTGGCGCTACCAAATTCGG+TGG 0.636710 3_2:-85125199 None:intergenic
TATGATGAGAAATTCGTCCT+CGG 0.637476 3_2:-85124999 None:intergenic
GGTGTGAATTGTTTCAGTGA+AGG 0.642841 3_2:+85122865 Msa0432870:CDS
TCTGCTGAGGATGTTACTGA+AGG 0.643853 3_2:+85123579 Msa0432870:CDS
ACCGTCGTAAATGAAGGCGG+TGG 0.644318 3_2:-85122608 None:intergenic
GTTGTCTGATGTATCTGCTG+AGG 0.644724 3_2:+85123566 Msa0432870:CDS
TATCAGCACATCCTCCGGAA+CGG 0.646071 3_2:-85123629 None:intergenic
GACTACAAAACTCACTGCCG+AGG 0.646136 3_2:+85124982 Msa0432870:CDS
TCTGGAGGGTCTGTCTACGA+TGG 0.652044 3_2:+85124854 Msa0432870:CDS
GGCGTATTGAGGCATCTGGA+GGG 0.653537 3_2:+85124840 Msa0432870:CDS
CTTTCTGACTGTATCATATG+CGG 0.655064 3_2:+85125418 Msa0432870:three_prime_UTR
TGAAAACAAATCATAAAACA+AGG 0.659514 3_2:+85122528 Msa0432870:five_prime_UTR
CAGGTTGCATGAAAGAGCAG+AGG 0.671998 3_2:+85124819 Msa0432870:CDS
AACAAGAGTAGCCAATGCAG+TGG 0.673761 3_2:-85124418 None:intergenic
GGAATGAAAGGCAAAGACGG+TGG 0.681718 3_2:+85124932 Msa0432870:CDS
ATAGTCTGTTTGCAGAAAGG+CGG 0.688045 3_2:-85124349 None:intergenic
TGGGCCAAGTGCTTTCTATG+GGG 0.700270 3_2:+85123734 Msa0432870:CDS
ACCACCGCCTTCATTTACGA+CGG 0.704422 3_2:+85122607 Msa0432870:five_prime_UTR
GGTTTCTTACAAGAGAAGCG+TGG 0.710252 3_2:-85123002 None:intergenic
CGAGGATAAAGATTTCCCAG+TGG 0.737162 3_2:+85124305 Msa0432870:CDS
ATGACCGTCGTAAATGAAGG+CGG 0.742021 3_2:-85122611 None:intergenic
CAGGTGTTTGATGGACACGG+CGG 0.806389 3_2:+85124234 Msa0432870:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGATATTCAATAATTT+GGG + chr3_2:85124455-85124474 Msa0432870:intron 10.0%
!! TAAAATAAAATTAAACAAGA+AGG - chr3_2:85125323-85125342 None:intergenic 10.0%
!! ATTTAATGTAGATAAAATCT+AGG + chr3_2:85123239-85123258 Msa0432870:intron 15.0%
!!! GATTTTGATATTCAATAATT+TGG + chr3_2:85124454-85124473 Msa0432870:intron 15.0%
!!! ACAAAAAATTATCATACTTT+TGG - chr3_2:85124511-85124530 None:intergenic 15.0%
!!! TTTATGATTTGTTTTCACAA+CGG - chr3_2:85122525-85122544 None:intergenic 20.0%
!! TGAAAACAAATCATAAAACA+AGG + chr3_2:85122528-85122547 Msa0432870:five_prime_UTR 20.0%
!!! ATTAGGTCTTTTTTATATGT+CGG - chr3_2:85122717-85122736 None:intergenic 20.0%
!!! TCAGAAAAAGTGTAAAAATT+AGG - chr3_2:85122734-85122753 None:intergenic 20.0%
!!! TTAAACCCATTTTCAAATTT+TGG + chr3_2:85122781-85122800 Msa0432870:five_prime_UTR 20.0%
!! AGTTACCAAAATTTGAAAAT+GGG - chr3_2:85122789-85122808 None:intergenic 20.0%
!!! ATTTTCAAATTTTGGTAACT+GGG + chr3_2:85122789-85122808 Msa0432870:five_prime_UTR 20.0%
!! CAAAAGAAAAAACAAAAGAT+CGG - chr3_2:85123026-85123045 None:intergenic 20.0%
!! ATTGATTATTGATGTTAGTA+GGG + chr3_2:85123434-85123453 Msa0432870:intron 20.0%
!! AAAGAACATCAATAAAATGA+AGG - chr3_2:85123503-85123522 None:intergenic 20.0%
!!! ATTTTATTGATGTTCTTTCA+TGG + chr3_2:85123505-85123524 Msa0432870:intron 20.0%
!! AAGTAACGTTATATTTCAAA+TGG + chr3_2:85124205-85124224 Msa0432870:intron 20.0%
!! TGCTAATTTAAAGAAAACAA+AGG - chr3_2:85124488-85124507 None:intergenic 20.0%
! CAGTTACCAAAATTTGAAAA+TGG - chr3_2:85122790-85122809 None:intergenic 25.0%
!!! CATTTTCAAATTTTGGTAAC+TGG + chr3_2:85122788-85122807 Msa0432870:five_prime_UTR 25.0%
!!! TTTTTGAAGTTTGGATCTTA+TGG + chr3_2:85122818-85122837 Msa0432870:five_prime_UTR 25.0%
! GATCTTATGGTTAAGAAAAA+TGG + chr3_2:85122831-85122850 Msa0432870:exon 25.0%
! AGAAAAATGGAAGAAATTGA+AGG + chr3_2:85122844-85122863 Msa0432870:exon 25.0%
!!! TGATGTTACTTTTCTTGTTT+TGG + chr3_2:85123079-85123098 Msa0432870:intron 25.0%
! AGAGAAATGTGAAATAATGA+TGG + chr3_2:85123292-85123311 Msa0432870:intron 25.0%
!!! TAGTTGTTGATTATGTTTTG+TGG + chr3_2:85123391-85123410 Msa0432870:intron 25.0%
! AACATCAATAATCAATCCTA+AGG - chr3_2:85123430-85123449 None:intergenic 25.0%
! GATTGATTATTGATGTTAGT+AGG + chr3_2:85123433-85123452 Msa0432870:intron 25.0%
! TTTCATGGAAAAATCTTTCA+TGG + chr3_2:85123520-85123539 Msa0432870:intron 25.0%
! AAAAAGACAAAACAAACGAA+AGG - chr3_2:85123956-85123975 None:intergenic 25.0%
!! TGCTAATCTTCTTTTGTAAT+TGG + chr3_2:85124039-85124058 Msa0432870:intron 25.0%
! TAATATGTGTTTATGCACAT+TGG - chr3_2:85124088-85124107 None:intergenic 25.0%
!!! CATCTGACATTTTAATTTAC+TGG + chr3_2:85125441-85125460 Msa0432870:three_prime_UTR 25.0%
!!! TATGTATTCATTGACTTTGT+TGG - chr3_2:85125496-85125515 None:intergenic 25.0%
! AAGTATCCAACTAATAATGA+CGG - chr3_2:85125541-85125560 None:intergenic 25.0%
! TTTGAAGAAAAGAGTGTGTT+GGG - chr3_2:85122648-85122667 None:intergenic 30.0%
! ATGTGGAGATTTGTTTGAAA+GGG - chr3_2:85122671-85122690 None:intergenic 30.0%
! AATGTGGAGATTTGTTTGAA+AGG - chr3_2:85122672-85122691 None:intergenic 30.0%
CCAGATTGTAAAAAGCAATT+GGG - chr3_2:85122760-85122779 None:intergenic 30.0%
!!! CCAATTGCTTTTTACAATCT+GGG + chr3_2:85122758-85122777 Msa0432870:five_prime_UTR 30.0%
GTGACAAATGGAAAGAAAAA+AGG - chr3_2:85123177-85123196 None:intergenic 30.0%
! AAATCTAGGACTAGAATAGA+AGG + chr3_2:85123253-85123272 Msa0432870:intron 30.0%
GAAATGTGAAATAATGATGG+CGG + chr3_2:85123295-85123314 Msa0432870:intron 30.0%
AAATGTGAAATAATGATGGC+GGG + chr3_2:85123296-85123315 Msa0432870:intron 30.0%
!! ATGTTTGTGTTGACAGTTTT+AGG + chr3_2:85123682-85123701 Msa0432870:CDS 30.0%
AACAACCATCATATCAGTAA+AGG - chr3_2:85123860-85123879 None:intergenic 30.0%
TGATATGATGGTTGTTAGAA+TGG + chr3_2:85123864-85123883 Msa0432870:intron 30.0%
! AAAGGAGAATAACGGAATAA+CGG - chr3_2:85123938-85123957 None:intergenic 30.0%
AACAAACGAAAGGAGAATAA+CGG - chr3_2:85123946-85123965 None:intergenic 30.0%
AATTGGTATTGCTTTACCTT+TGG + chr3_2:85124056-85124075 Msa0432870:intron 30.0%
AAAAACTCCATAGCTAGTAA+AGG - chr3_2:85124117-85124136 None:intergenic 30.0%
ACGTTATATTTCAAATGGCT+TGG + chr3_2:85124210-85124229 Msa0432870:intron 30.0%
!!! AATTTTTTGTCCGCATGTTT+TGG + chr3_2:85124521-85124540 Msa0432870:intron 30.0%
CATAAATCTGATTGAGGTTT+GGG + chr3_2:85124556-85124575 Msa0432870:intron 30.0%
GAGCATGAAAATGGAAATAT+GGG - chr3_2:85124609-85124628 None:intergenic 30.0%
AGAGCATGAAAATGGAAATA+TGG - chr3_2:85124610-85124629 None:intergenic 30.0%
TGAATCTCAATTCTCATAAG+AGG - chr3_2:85125350-85125369 None:intergenic 30.0%
TGAGATTCATTTGTAACTGT+AGG + chr3_2:85125361-85125380 Msa0432870:three_prime_UTR 30.0%
ACAAAACCGTCATTATTAGT+TGG + chr3_2:85125532-85125551 Msa0432870:three_prime_UTR 30.0%
! GTTTGAAGAAAAGAGTGTGT+TGG - chr3_2:85122649-85122668 None:intergenic 35.0%
AAAGGGTGGTTTAACAAATG+TGG - chr3_2:85122688-85122707 None:intergenic 35.0%
TTATATGTCGGCGATTCAAA+GGG - chr3_2:85122705-85122724 None:intergenic 35.0%
TTTATATGTCGGCGATTCAA+AGG - chr3_2:85122706-85122725 None:intergenic 35.0%
!!! CCCAATTGCTTTTTACAATC+TGG + chr3_2:85122757-85122776 Msa0432870:five_prime_UTR 35.0%
CCCAGATTGTAAAAAGCAAT+TGG - chr3_2:85122761-85122780 None:intergenic 35.0%
!! ATAGATGGATTAGGATTTGG+AGG - chr3_2:85122913-85122932 None:intergenic 35.0%
!! GCAATAGATGGATTAGGATT+TGG - chr3_2:85122916-85122935 None:intergenic 35.0%
TTTCTGCATGGTAAAACAAG+AGG - chr3_2:85122970-85122989 None:intergenic 35.0%
CACTACATGAAAGTGACAAA+TGG - chr3_2:85123189-85123208 None:intergenic 35.0%
GGCTCAACAAACATATAGAT+GGG + chr3_2:85123715-85123734 Msa0432870:CDS 35.0%
!! AAAATCAAGATAAGCGCTGA+GGG - chr3_2:85123820-85123839 None:intergenic 35.0%
! AAAAATCAAGATAAGCGCTG+AGG - chr3_2:85123821-85123840 None:intergenic 35.0%
TTGTGCCTTTACTGATATGA+TGG + chr3_2:85123852-85123871 Msa0432870:intron 35.0%
! GTTTTTACAGCTGACAAGAA+TGG + chr3_2:85124131-85124150 Msa0432870:intron 35.0%
!! ATATTTCAAATGGCTTGGTC+AGG + chr3_2:85124215-85124234 Msa0432870:intron 35.0%
TTATCCTCGAGAATGAACTT+TGG - chr3_2:85124294-85124313 None:intergenic 35.0%
ATTTCCCAGTGGATATTGAA+AGG + chr3_2:85124316-85124335 Msa0432870:CDS 35.0%
CTATCCTTTCAATATCCACT+GGG - chr3_2:85124323-85124342 None:intergenic 35.0%
ACTATCCTTTCAATATCCAC+TGG - chr3_2:85124324-85124343 None:intergenic 35.0%
TTTCGTACTTCCAAAACATG+CGG - chr3_2:85124534-85124553 None:intergenic 35.0%
! GAAAGGCATAAATCTGATTG+AGG + chr3_2:85124550-85124569 Msa0432870:intron 35.0%
GCATAAATCTGATTGAGGTT+TGG + chr3_2:85124555-85124574 Msa0432870:intron 35.0%
!! ATTGAGGTTTGGGATCTTTT+TGG + chr3_2:85124566-85124585 Msa0432870:intron 35.0%
! TTTTGGTCTGCTACAAAAGT+TGG + chr3_2:85124583-85124602 Msa0432870:intron 35.0%
TGTATTTGATGTCATGTCAG+AGG - chr3_2:85124634-85124653 None:intergenic 35.0%
TGATTGTAGTTTCTGACTGT+AGG + chr3_2:85124711-85124730 Msa0432870:intron 35.0%
GTCTACGATGGATATCTTAA+CGG + chr3_2:85124866-85124885 Msa0432870:CDS 35.0%
TCTACGATGGATATCTTAAC+GGG + chr3_2:85124867-85124886 Msa0432870:CDS 35.0%
!! AGTTTTGTAGTCATGAGTTC+AGG - chr3_2:85124974-85124993 None:intergenic 35.0%
TATGATGAGAAATTCGTCCT+CGG - chr3_2:85125002-85125021 None:intergenic 35.0%
! AAAATGCTGTAGATTTTGCG+CGG + chr3_2:85125056-85125075 Msa0432870:CDS 35.0%
!! AACTGTAGGTGTTACTTGTT+AGG + chr3_2:85125375-85125394 Msa0432870:three_prime_UTR 35.0%
! TGTTACTTGTTAGGTGTAGT+AGG + chr3_2:85125384-85125403 Msa0432870:three_prime_UTR 35.0%
CTTTCTGACTGTATCATATG+CGG + chr3_2:85125418-85125437 Msa0432870:three_prime_UTR 35.0%
AGAATGACCGTCGTAAATGA+AGG - chr3_2:85122617-85122636 None:intergenic 40.0%
! AAAAGAGTGTGTTGGGAAAG+AGG - chr3_2:85122641-85122660 None:intergenic 40.0%
!!! GGGTCTGTGTTTTTGAAGTT+TGG + chr3_2:85122809-85122828 Msa0432870:five_prime_UTR 40.0%
GGTGTGAATTGTTTCAGTGA+AGG + chr3_2:85122865-85122884 Msa0432870:CDS 40.0%
! GCAGAAGCAATAGATGGATT+AGG - chr3_2:85122922-85122941 None:intergenic 40.0%
CGAAAAGCAGAAGCAATAGA+TGG - chr3_2:85122928-85122947 None:intergenic 40.0%
! CGAACAAGAGATTTTCTGCA+TGG - chr3_2:85122982-85123001 None:intergenic 40.0%
TGGATTCAGTTTGCAACCTT+AGG + chr3_2:85123411-85123430 Msa0432870:intron 40.0%
ACACATCCTCCATATTTGAC+CGG - chr3_2:85123662-85123681 None:intergenic 40.0%
!!! TTGTGTTGACAGTTTTAGGC+AGG + chr3_2:85123686-85123705 Msa0432870:CDS 40.0%
!!! TGTGTTGACAGTTTTAGGCA+GGG + chr3_2:85123687-85123706 Msa0432870:CDS 40.0%
! CTATATGTTTGTTGAGCCCA+TGG - chr3_2:85123713-85123732 None:intergenic 40.0%
GGGCTCAACAAACATATAGA+TGG + chr3_2:85123714-85123733 Msa0432870:CDS 40.0%
!! AAATCAAGATAAGCGCTGAG+GGG - chr3_2:85123819-85123838 None:intergenic 40.0%
TAACGGAATAACGGCATATG+AGG - chr3_2:85123929-85123948 None:intergenic 40.0%
GTATTGCTTTACCTTTGGTG+TGG + chr3_2:85124061-85124080 Msa0432870:intron 40.0%
AGATGCACCTTTACTAGCTA+TGG + chr3_2:85124107-85124126 Msa0432870:intron 40.0%
TACAGCTGACAAGAATGGAT+AGG + chr3_2:85124136-85124155 Msa0432870:intron 40.0%
TTTGCCAAAGTTCATTCTCG+AGG + chr3_2:85124287-85124306 Msa0432870:CDS 40.0%
ATAGTCTGTTTGCAGAAAGG+CGG - chr3_2:85124352-85124371 None:intergenic 40.0%
TGCATAGTCTGTTTGCAGAA+AGG - chr3_2:85124355-85124374 None:intergenic 40.0%
GCAAACAGACTATGCATTTG+CGG + chr3_2:85124359-85124378 Msa0432870:CDS 40.0%
!! GCATTGGCTACTCTTGTTAT+AGG + chr3_2:85124423-85124442 Msa0432870:CDS 40.0%
! TGGCTACTCTTGTTATAGGA+AGG + chr3_2:85124427-85124446 Msa0432870:CDS 40.0%
! ACTCTTGTTATAGGAAGGTC+AGG + chr3_2:85124432-85124451 Msa0432870:intron 40.0%
!!! GCATGTTTTGGAAGTACGAA+AGG + chr3_2:85124533-85124552 Msa0432870:intron 40.0%
! TCAGAGGAAGAGCATGAAAA+TGG - chr3_2:85124618-85124637 None:intergenic 40.0%
!! TGTCAATTGCTTTTCCACGA+CGG - chr3_2:85124781-85124800 None:intergenic 40.0%
CTTAATGTTGCTCGAGCTAT+TGG + chr3_2:85124893-85124912 Msa0432870:CDS 40.0%
GAAGGAATGAAAGGCAAAGA+CGG + chr3_2:85124929-85124948 Msa0432870:CDS 40.0%
GAGGACGAATTTCTCATCAT+AGG + chr3_2:85125001-85125020 Msa0432870:CDS 40.0%
TTTCTCATCATAGGCTGTGA+TGG + chr3_2:85125010-85125029 Msa0432870:CDS 40.0%
TTCTCATCATAGGCTGTGAT+GGG + chr3_2:85125011-85125030 Msa0432870:CDS 40.0%
! GCGCAAAATCTACAGCATTT+TGG - chr3_2:85125057-85125076 None:intergenic 40.0%
AATCCTTACTACACACAGCT+GGG - chr3_2:85125105-85125124 None:intergenic 40.0%
AAATCCTTACTACACACAGC+TGG - chr3_2:85125106-85125125 None:intergenic 40.0%
AGCTGTGTGTAGTAAGGATT+TGG + chr3_2:85125105-85125124 Msa0432870:CDS 40.0%
! TAGTAAGGATTTGGTTGACG+AGG + chr3_2:85125114-85125133 Msa0432870:CDS 40.0%
!! GAGGCTTTGAAGAGAAAAAG+TGG + chr3_2:85125133-85125152 Msa0432870:CDS 40.0%
AGACAATTTAGCTGCTGTTG+TGG + chr3_2:85125156-85125175 Msa0432870:CDS 40.0%
! GAAGGAGTTGCAAAGCTTTT+TGG + chr3_2:85125258-85125277 Msa0432870:CDS 40.0%
! GCAAAGCTTTTTGGATAGCT+TGG + chr3_2:85125267-85125286 Msa0432870:CDS 40.0%
GATAGCTTGGCAAAATGAGT+TGG + chr3_2:85125280-85125299 Msa0432870:exon 40.0%
! TGAGTTGGCAGAAGTCTTTA+TGG + chr3_2:85125295-85125314 Msa0432870:exon 40.0%
! TTTGGGTTTCGAAGATGCAG+TGG - chr3_2:85122571-85122590 None:intergenic 45.0%
ATGACCGTCGTAAATGAAGG+CGG - chr3_2:85122614-85122633 None:intergenic 45.0%
GGTTTCTTACAAGAGAAGCG+TGG - chr3_2:85123005-85123024 None:intergenic 45.0%
!! GTGAAATAATGATGGCGGGT+TGG + chr3_2:85123300-85123319 Msa0432870:intron 45.0%
!! ATAATGATGGCGGGTTGGTT+TGG + chr3_2:85123305-85123324 Msa0432870:intron 45.0%
GTTGTCTGATGTATCTGCTG+AGG + chr3_2:85123566-85123585 Msa0432870:CDS 45.0%
TCTGCTGAGGATGTTACTGA+AGG + chr3_2:85123579-85123598 Msa0432870:CDS 45.0%
!! GCTTTGGAAGGAAATCAGAC+TGG - chr3_2:85123608-85123627 None:intergenic 45.0%
TATCGGGTTCCGGTCAAATA+TGG + chr3_2:85123650-85123669 Msa0432870:CDS 45.0%
ATGGGCCAAGTGCTTTCTAT+GGG + chr3_2:85123733-85123752 Msa0432870:CDS 45.0%
!! GATACCCCATAGAAAGCACT+TGG - chr3_2:85123741-85123760 None:intergenic 45.0%
CGAGGATAAAGATTTCCCAG+TGG + chr3_2:85124305-85124324 Msa0432870:CDS 45.0%
AACAAGAGTAGCCAATGCAG+TGG - chr3_2:85124421-85124440 None:intergenic 45.0%
AGTTTCTGACTGTAGGTTGC+TGG + chr3_2:85124718-85124737 Msa0432870:intron 45.0%
ATGTCAAGAGACCACAAACC+AGG + chr3_2:85124800-85124819 Msa0432870:CDS 45.0%
! CTTTCATGCAACCTGGTTTG+TGG - chr3_2:85124814-85124833 None:intergenic 45.0%
TGGCACATGGAAGGAATGAA+AGG + chr3_2:85124920-85124939 Msa0432870:CDS 45.0%
! TCATAGGCTGTGATGGGATT+TGG + chr3_2:85125017-85125036 Msa0432870:CDS 45.0%
! CATAGGCTGTGATGGGATTT+GGG + chr3_2:85125018-85125037 Msa0432870:CDS 45.0%
CTTCTCTGCTGAAGGTTTGA+AGG + chr3_2:85125240-85125259 Msa0432870:CDS 45.0%
TCGTAAATGAAGGCGGTGGT+CGG - chr3_2:85122607-85122626 None:intergenic 50.0%
ACCACCGCCTTCATTTACGA+CGG + chr3_2:85122607-85122626 Msa0432870:five_prime_UTR 50.0%
TATGTCGGCGATTCAAAGGG+TGG - chr3_2:85122702-85122721 None:intergenic 50.0%
!! CGGGTTGGTTTGGTCAGATT+GGG + chr3_2:85123315-85123334 Msa0432870:intron 50.0%
!! GGGTTGGTTTGGTCAGATTG+GGG + chr3_2:85123316-85123335 Msa0432870:intron 50.0%
GTTTGGTCAGATTGGGGAAG+TGG + chr3_2:85123322-85123341 Msa0432870:intron 50.0%
TTCCTTCCAAAGCTCCGTTC+CGG + chr3_2:85123615-85123634 Msa0432870:CDS 50.0%
TATCAGCACATCCTCCGGAA+CGG - chr3_2:85123632-85123651 None:intergenic 50.0%
! TCCGGAGGATGTGCTGATAT+CGG + chr3_2:85123633-85123652 Msa0432870:CDS 50.0%
! GATGTGCTGATATCGGGTTC+CGG + chr3_2:85123640-85123659 Msa0432870:CDS 50.0%
!!! ACAGTTTTAGGCAGGGCCAT+GGG + chr3_2:85123694-85123713 Msa0432870:CDS 50.0%
GATGGGCCAAGTGCTTTCTA+TGG + chr3_2:85123732-85123751 Msa0432870:CDS 50.0%
TGGGCCAAGTGCTTTCTATG+GGG + chr3_2:85123734-85123753 Msa0432870:CDS 50.0%
CTGATGTTCTGCGCATCTGA+TGG + chr3_2:85123980-85123999 Msa0432870:intron 50.0%
GCGCATCTGATGGCATCTTT+CGG + chr3_2:85123990-85124009 Msa0432870:intron 50.0%
TGCACATTGGTCCACACCAA+AGG - chr3_2:85124075-85124094 None:intergenic 50.0%
!! TGGCTTGGTCAGGTGTTTGA+TGG + chr3_2:85124225-85124244 Msa0432870:intron 50.0%
! GGTCAGGTGTTTGATGGACA+CGG + chr3_2:85124231-85124250 Msa0432870:intron 50.0%
TTCTGACTGTAGGTTGCTGG+TGG + chr3_2:85124721-85124740 Msa0432870:intron 50.0%
CTCTGCTCTTTCATGCAACC+TGG - chr3_2:85124821-85124840 None:intergenic 50.0%
CAGGTTGCATGAAAGAGCAG+AGG + chr3_2:85124819-85124838 Msa0432870:CDS 50.0%
! GAAAGAGCAGAGGCGTATTG+AGG + chr3_2:85124829-85124848 Msa0432870:CDS 50.0%
! TTGCTCGAGCTATTGGTGAC+TGG + chr3_2:85124900-85124919 Msa0432870:CDS 50.0%
! AGCTATTGGTGACTGGCACA+TGG + chr3_2:85124907-85124926 Msa0432870:CDS 50.0%
! ATTGGTGACTGGCACATGGA+AGG + chr3_2:85124911-85124930 Msa0432870:CDS 50.0%
GGAATGAAAGGCAAAGACGG+TGG + chr3_2:85124932-85124951 Msa0432870:CDS 50.0%
GACTACAAAACTCACTGCCG+AGG + chr3_2:85124982-85125001 Msa0432870:CDS 50.0%
TAAATGAAGGCGGTGGTCGG+TGG - chr3_2:85122604-85122623 None:intergenic 55.0%
ACCGTCGTAAATGAAGGCGG+TGG - chr3_2:85122611-85122630 None:intergenic 55.0%
!! GCGGGTTGGTTTGGTCAGAT+TGG + chr3_2:85123314-85123333 Msa0432870:intron 55.0%
CCCGATATCAGCACATCCTC+CGG - chr3_2:85123637-85123656 None:intergenic 55.0%
! CCGGAGGATGTGCTGATATC+GGG + chr3_2:85123634-85123653 Msa0432870:CDS 55.0%
CGGGTTCCGGTCAAATATGG+AGG + chr3_2:85123653-85123672 Msa0432870:CDS 55.0%
!!! GACAGTTTTAGGCAGGGCCA+TGG + chr3_2:85123693-85123712 Msa0432870:CDS 55.0%
!! ATAAGCGCTGAGGGGAGAGA+GGG - chr3_2:85123811-85123830 None:intergenic 55.0%
! CAGGTGTTTGATGGACACGG+CGG + chr3_2:85124234-85124253 Msa0432870:intron 55.0%
CTCAATGCTGCCCTTGCATC+CGG + chr3_2:85124393-85124412 Msa0432870:CDS 55.0%
AGTAGCCAATGCAGTGGTGC+CGG - chr3_2:85124415-85124434 None:intergenic 55.0%
TGACTGTAGGTTGCTGGTGG+TGG + chr3_2:85124724-85124743 Msa0432870:intron 55.0%
!! TTGCTGGTGGTGGCAAATGC+TGG + chr3_2:85124734-85124753 Msa0432870:CDS 55.0%
! CAGAGGCGTATTGAGGCATC+TGG + chr3_2:85124836-85124855 Msa0432870:CDS 55.0%
! AGGCGTATTGAGGCATCTGG+AGG + chr3_2:85124839-85124858 Msa0432870:CDS 55.0%
! GGCGTATTGAGGCATCTGGA+GGG + chr3_2:85124840-85124859 Msa0432870:CDS 55.0%
TCTGGAGGGTCTGTCTACGA+TGG + chr3_2:85124854-85124873 Msa0432870:CDS 55.0%
AGTTCAGGCTCTGCACTGAG+TGG - chr3_2:85124959-85124978 None:intergenic 55.0%
CGACCCAGCTGTGTGTAGTA+AGG + chr3_2:85125099-85125118 Msa0432870:CDS 55.0%
GAGCGTGGCGCTACCAAATT+CGG - chr3_2:85125205-85125224 None:intergenic 55.0%
AGAGAAGCTCCTGTGCACTC+TGG - chr3_2:85125227-85125246 None:intergenic 55.0%
CACAGGAGCTTCTCTGCTGA+AGG + chr3_2:85125232-85125251 Msa0432870:CDS 55.0%
TCGGTGGTCGGTGAGGGTTT+GGG - chr3_2:85122588-85122607 None:intergenic 60.0%
!! CTCCGGAACGGAGCTTTGGA+AGG - chr3_2:85123620-85123639 None:intergenic 60.0%
CTTCCAAAGCTCCGTTCCGG+AGG + chr3_2:85123618-85123637 Msa0432870:CDS 60.0%
CATCCTCCGGAACGGAGCTT+TGG - chr3_2:85123624-85123643 None:intergenic 60.0%
!! GATAAGCGCTGAGGGGAGAG+AGG - chr3_2:85123812-85123831 None:intergenic 60.0%
! TGCAGTGGTGCCGGATGCAA+GGG - chr3_2:85124406-85124425 None:intergenic 60.0%
! ATGCAGTGGTGCCGGATGCA+AGG - chr3_2:85124407-85124426 None:intergenic 60.0%
TGCATCCGGCACCACTGCAT+TGG + chr3_2:85124407-85124426 Msa0432870:CDS 60.0%
! CTGTAGATTTTGCGCGGCGC+AGG + chr3_2:85125062-85125081 Msa0432870:CDS 60.0%
GCAGCAGCCTCCACCGAATT+TGG + chr3_2:85125189-85125208 Msa0432870:CDS 60.0%
! GGCGCTACCAAATTCGGTGG+AGG - chr3_2:85125199-85125218 None:intergenic 60.0%
CGTGGCGCTACCAAATTCGG+TGG - chr3_2:85125202-85125221 None:intergenic 60.0%
GTCGGTGGTCGGTGAGGGTT+TGG - chr3_2:85122589-85122608 None:intergenic 65.0%
TGAAGGCGGTGGTCGGTGGT+CGG - chr3_2:85122600-85122619 None:intergenic 65.0%
CGAGCAGTGTTGTGCCGTCG+TGG + chr3_2:85124764-85124783 Msa0432870:CDS 65.0%
! TTTTGCGCGGCGCAGGCTTC+AGG + chr3_2:85125069-85125088 Msa0432870:CDS 65.0%
!! CTCCTGTGCACTCTGGAGCG+TGG - chr3_2:85125220-85125239 None:intergenic 65.0%
CGGTGGTCGGTGGTCGGTGA+GGG - chr3_2:85122594-85122613 None:intergenic 70.0%
GCGCTGAGGGGAGAGAGGGA+GGG - chr3_2:85123807-85123826 None:intergenic 70.0%
! AGCGCTGAGGGGAGAGAGGG+AGG - chr3_2:85123808-85123827 None:intergenic 70.0%
CGCCACGCTCCAGAGTGCAC+AGG + chr3_2:85125215-85125234 Msa0432870:CDS 70.0%
GCGGTGGTCGGTGGTCGGTG+AGG - chr3_2:85122595-85122614 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 85122507 85125599 85122507 ID=Msa0432870;Name=Msa0432870
chr3_2 mRNA 85122507 85125599 85122507 ID=Msa0432870-mRNA-1;Parent=Msa0432870;Name=Msa0432870-mRNA-1;_AED=0.05;_eAED=0.05;_QI=343|1|1|1|0.66|0.75|4|302|380
chr3_2 exon 85122507 85123014 85122507 ID=Msa0432870-mRNA-1:exon:24216;Parent=Msa0432870-mRNA-1
chr3_2 exon 85123555 85123755 85123555 ID=Msa0432870-mRNA-1:exon:24217;Parent=Msa0432870-mRNA-1
chr3_2 exon 85124237 85124448 85124237 ID=Msa0432870-mRNA-1:exon:24218;Parent=Msa0432870-mRNA-1
chr3_2 exon 85124733 85125599 85124733 ID=Msa0432870-mRNA-1:exon:24219;Parent=Msa0432870-mRNA-1
chr3_2 five_prime_UTR 85122507 85122849 85122507 ID=Msa0432870-mRNA-1:five_prime_utr;Parent=Msa0432870-mRNA-1
chr3_2 CDS 85122850 85123014 85122850 ID=Msa0432870-mRNA-1:cds;Parent=Msa0432870-mRNA-1
chr3_2 CDS 85123555 85123755 85123555 ID=Msa0432870-mRNA-1:cds;Parent=Msa0432870-mRNA-1
chr3_2 CDS 85124237 85124448 85124237 ID=Msa0432870-mRNA-1:cds;Parent=Msa0432870-mRNA-1
chr3_2 CDS 85124733 85125297 85124733 ID=Msa0432870-mRNA-1:cds;Parent=Msa0432870-mRNA-1
chr3_2 three_prime_UTR 85125298 85125599 85125298 ID=Msa0432870-mRNA-1:three_prime_utr;Parent=Msa0432870-mRNA-1
Gene Sequence

>Msa0432870

ATGGAAGAAATTGAAGGTGTGAATTGTTTCAGTGAAGGTAGAAGCTCTAGTGAGAGTCGACCTCCAAATCCTAATCCATCTATTGCTTCTGCTTTTCGTCAATGTCAACGCAATGATCCTCTTGTTTTACCATGCAGAAAATCTCTTGTTCGCCACGCTTCTCTTACGAAAATGAAGTTGTCTGATGTATCTGCTGAGGATGTTACTGAAGGTTGCCAGTCTGATTTCCTTCCAAAGCTCCGTTCCGGAGGATGTGCTGATATCGGGTTCCGGTCAAATATGGAGGATGTGTATGTTTGTGTTGACAGTTTTAGGCAGGGCCATGGGCTCAACAAACATATAGATGGGCCAAGTGCTTTCTATGGGGTGTTTGATGGACACGGCGGAAAGCATGCTGCTGACTTTGCTTGCAATCATTTGCCAAAGTTCATTCTCGAGGATAAAGATTTCCCAGTGGATATTGAAAGGATAGTTGCTTCCGCCTTTCTGCAAACAGACTATGCATTTGCGGAAGCTTGTTCTCTCAATGCTGCCCTTGCATCCGGCACCACTGCATTGGCTACTCTTGTTATAGGAAGGTTGCTGGTGGTGGCAAATGCTGGAGATTGTCGAGCAGTGTTGTGCCGTCGTGGAAAAGCAATTGACATGTCAAGAGACCACAAACCAGGTTGCATGAAAGAGCAGAGGCGTATTGAGGCATCTGGAGGGTCTGTCTACGATGGATATCTTAACGGGCAACTTAATGTTGCTCGAGCTATTGGTGACTGGCACATGGAAGGAATGAAAGGCAAAGACGGTGGACCACTCAGTGCAGAGCCTGAACTCATGACTACAAAACTCACTGCCGAGGACGAATTTCTCATCATAGGCTGTGATGGGATTTGGGATGTTTTTAGAAGCCAAAATGCTGTAGATTTTGCGCGGCGCAGGCTTCAGGAGCATAACGACCCAGCTGTGTGTAGTAAGGATTTGGTTGACGAGGCTTTGAAGAGAAAAAGTGGAGACAATTTAGCTGCTGTTGTGGTTTGCTTTCAGCAGCAGCCTCCACCGAATTTGGTAGCGCCACGCTCCAGAGTGCACAGGAGCTTCTCTGCTGAAGGTTTGAAGGAGTTGCAAAGCTTTTTGGATAGCTTGGCAAAATGA
Protein sequence

>Msa0432870

MEEIEGVNCFSEGRSSSESRPPNPNPSIASAFRQCQRNDPLVLPCRKSLVRHASLTKMKLSDVSAEDVTEGCQSDFLPKLRSGGCADIGFRSNMEDVYVCVDSFRQGHGLNKHIDGPSAFYGVFDGHGGKHAADFACNHLPKFILEDKDFPVDIERIVASAFLQTDYAFAEACSLNAALASGTTALATLVIGRLLVVANAGDCRAVLCRRGKAIDMSRDHKPGCMKEQRRIEASGGSVYDGYLNGQLNVARAIGDWHMEGMKGKDGGPLSAEPELMTTKLTAEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPAVCSKDLVDEALKRKSGDNLAAVVVCFQQQPPPNLVAPRSRVHRSFSAEGLKELQSFLDSLAK*