Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368080 | XP_003607276.1 | 97.287 | 258 | 5 | 1 | 1 | 258 | 1 | 256 | 5.94e-178 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368080 | sp|P45434|SSRA_ARATH | 60.581 | 241 | 87 | 2 | 23 | 258 | 20 | 257 | 9.70e-84 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368080 | G7JPK6 | 97.287 | 258 | 5 | 1 | 1 | 258 | 1 | 256 | 2.84e-178 | 499 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0093850 | Msa1368080 | 0.823554 | 1.301321e-53 | -8.615850e-47 |
| Msa1368080 | Msa1373170 | 0.866840 | 2.123973e-65 | -8.615850e-47 |
| Msa1368080 | Msa1373820 | 0.820568 | 6.404667e-53 | -8.615850e-47 |
| Msa1368080 | Msa1403570 | 0.822084 | 2.861936e-53 | -8.615850e-47 |
| Msa1368080 | Msa1459910 | 0.806767 | 7.011781e-50 | -8.615850e-47 |
| Msa1368080 | Msa1462910 | 0.805256 | 1.457069e-49 | -8.615850e-47 |
| Msa0615580 | Msa1368080 | 0.802117 | 6.533188e-49 | -8.615850e-47 |
| Msa0693330 | Msa1368080 | 0.818356 | 2.046279e-52 | -8.615850e-47 |
| Msa0766080 | Msa1368080 | 0.820869 | 5.461545e-53 | -8.615850e-47 |
| Msa0804250 | Msa1368080 | 0.824521 | 7.716050e-54 | -8.615850e-47 |
| Msa0805170 | Msa1368080 | 0.801261 | 9.785459e-49 | -8.615850e-47 |
| Msa0826510 | Msa1368080 | 0.810350 | 1.204354e-50 | -8.615850e-47 |
| Msa0836120 | Msa1368080 | 0.812706 | 3.703588e-51 | -8.615850e-47 |
| Msa0152870 | Msa1368080 | 0.849403 | 3.307137e-60 | -8.615850e-47 |
| Msa0202110 | Msa1368080 | 0.830215 | 3.328487e-55 | -8.615850e-47 |
| Msa0209140 | Msa1368080 | 0.868518 | 6.152274e-66 | -8.615850e-47 |
| Msa0221030 | Msa1368080 | 0.804146 | 2.485287e-49 | -8.615850e-47 |
| Msa0238660 | Msa1368080 | 0.817700 | 2.878047e-52 | -8.615850e-47 |
| Msa1257440 | Msa1368080 | 0.800647 | 1.306635e-48 | -8.615850e-47 |
| Msa1278670 | Msa1368080 | 0.811632 | 6.352455e-51 | -8.615850e-47 |
| Msa0385830 | Msa1368080 | 0.808415 | 3.131973e-50 | -8.615850e-47 |
| Msa0430230 | Msa1368080 | 0.830039 | 3.675811e-55 | -8.615850e-47 |
| Msa0432870 | Msa1368080 | 0.805607 | 1.230489e-49 | -8.615850e-47 |
| Msa0435370 | Msa1368080 | 0.840512 | 8.313905e-58 | -8.615850e-47 |
| Msa0435420 | Msa1368080 | 0.829118 | 6.155038e-55 | -8.615850e-47 |
| Msa0435570 | Msa1368080 | 0.817885 | 2.614425e-52 | -8.615850e-47 |
| Msa0437020 | Msa1368080 | 0.806605 | 7.583557e-50 | -8.615850e-47 |
| Msa0443390 | Msa1368080 | 0.801530 | 8.622506e-49 | -8.615850e-47 |
| Msa1074900 | Msa1368080 | 0.804230 | 2.386778e-49 | -8.615850e-47 |
| Msa1076560 | Msa1368080 | 0.802625 | 5.132415e-49 | -8.615850e-47 |
| Msa1079190 | Msa1368080 | 0.812044 | 5.168555e-51 | -8.615850e-47 |
| Msa0241830 | Msa1368080 | 0.831172 | 1.940272e-55 | -8.615850e-47 |
| Msa0261170 | Msa1368080 | 0.820058 | 8.383639e-53 | -8.615850e-47 |
| Msa0270210 | Msa1368080 | 0.820090 | 8.240180e-53 | -8.615850e-47 |
| Msa0276380 | Msa1368080 | 0.829498 | 4.978995e-55 | -8.615850e-47 |
| Msa0296250 | Msa1368080 | 0.840953 | 6.372196e-58 | -8.615850e-47 |
| Msa0300350 | Msa1368080 | 0.810260 | 1.259056e-50 | -8.615850e-47 |
| Msa0322900 | Msa1368080 | 0.809520 | 1.817245e-50 | -8.615850e-47 |
| Msa0326710 | Msa1368080 | 0.805319 | 1.413868e-49 | -8.615850e-47 |
| Msa0332640 | Msa1368080 | 0.844126 | 9.170177e-59 | -8.615850e-47 |
| Msa1133540 | Msa1368080 | 0.835101 | 2.041691e-56 | -8.615850e-47 |
| Msa1135890 | Msa1368080 | 0.801900 | 7.238553e-49 | -8.615850e-47 |
| Msa1165090 | Msa1368080 | 0.820986 | 5.132873e-53 | -8.615850e-47 |
| Msa1169080 | Msa1368080 | 0.820929 | 5.289392e-53 | -8.615850e-47 |
| Msa0518030 | Msa1368080 | 0.831738 | 1.408162e-55 | -8.615850e-47 |
| Msa0519150 | Msa1368080 | 0.801949 | 7.072296e-49 | -8.615850e-47 |
| Msa0534750 | Msa1368080 | 0.802464 | 5.540639e-49 | -8.615850e-47 |
| Msa0573010 | Msa1368080 | 0.812783 | 3.563376e-51 | -8.615850e-47 |
| Msa0573090 | Msa1368080 | 0.828297 | 9.722705e-55 | -8.615850e-47 |
| Msa0865620 | Msa1368080 | 0.805148 | 1.535172e-49 | -8.615850e-47 |
| Msa0896710 | Msa1368080 | 0.817617 | 3.005452e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368080 | MtrunA17_Chr4g0038491 | 97.287 | 258 | 5 | 1 | 1 | 258 | 1 | 256 | 0.0 | 499 |
| Msa1368080 | MtrunA17_Chr3g0145491 | 74.502 | 251 | 59 | 3 | 1 | 248 | 1 | 249 | 4.11e-125 | 355 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368080 | AT2G16595.1 | 56.034 | 232 | 94 | 3 | 19 | 248 | 17 | 242 | 3.58e-88 | 262 |
| Msa1368080 | AT2G21160.1 | 60.581 | 241 | 87 | 2 | 23 | 258 | 20 | 257 | 9.86e-85 | 254 |
| Msa1368080 | AT2G21160.2 | 59.412 | 170 | 61 | 2 | 23 | 187 | 20 | 186 | 1.11e-64 | 200 |
Find 83 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATTTATGGGAAGATATT+AGG | 0.172676 | tig0018619:-1665 | Msa1368080:three_prime_UTR |
| TGGCTTCCTTCAACTCCTTC+TGG | 0.233654 | tig0018619:-5300 | Msa1368080:CDS |
| AGTTGCCCTCCTTGTCCTCC+TGG | 0.292164 | tig0018619:-2990 | Msa1368080:CDS |
| ATTATATCAATGGCTGAAAA+TGG | 0.302791 | tig0018619:+1583 | Msa1368080:intergenic |
| ACAGACTAGAAACCTATATT+AGG | 0.330285 | tig0018619:+1708 | Msa1368080:intergenic |
| TCTGTCTTTCTTGTTACTCT+TGG | 0.333410 | tig0018619:-3013 | Msa1368080:CDS |
| TGCAGTCAGTAAATTCTTGC+AGG | 0.339537 | tig0018619:-3273 | Msa1368080:intron |
| CTCCTGGGGCTATGGATTCA+TGG | 0.339701 | tig0018619:-2974 | Msa1368080:CDS |
| ATATTTATGGGAAGATATTA+GGG | 0.346402 | tig0018619:-1664 | Msa1368080:three_prime_UTR |
| CTAGTTCCAACTTCAACTTT+AGG | 0.354589 | tig0018619:+2246 | Msa1368080:intergenic |
| CTTGAATGTTGTTGCAATCA+AGG | 0.356465 | tig0018619:-3945 | Msa1368080:CDS |
| CCCAAGACTTTGATAGCATT+GGG | 0.358768 | tig0018619:-4395 | Msa1368080:CDS |
| ACACTTATTGTATCAATTCC+TGG | 0.359626 | tig0018619:+4357 | Msa1368080:intergenic |
| ATCGCTTCACCGTTCATTCA+AGG | 0.374920 | tig0018619:-5253 | Msa1368080:intron |
| TACCAAAGCACCTTCTTTAA+CGG | 0.376523 | tig0018619:-3079 | Msa1368080:CDS |
| GTTGCCCTCCTTGTCCTCCT+GGG | 0.379518 | tig0018619:-2989 | Msa1368080:CDS |
| TCCTTGTCCTCCTGGGGCTA+TGG | 0.384359 | tig0018619:-2982 | Msa1368080:CDS |
| TTCAATTAATATTATATCAA+TGG | 0.392531 | tig0018619:+1573 | Msa1368080:intergenic |
| TAGATATTACTACCTTAGAT+AGG | 0.392887 | tig0018619:+2939 | Msa1368080:intergenic |
| ACTGAAGAAGGAAGTGATAT+TGG | 0.393457 | tig0018619:-4435 | Msa1368080:CDS |
| TTGATATAATATTAATTGAA+TGG | 0.396818 | tig0018619:-1570 | Msa1368080:three_prime_UTR |
| TCAAATACAAAACCTATCTA+AGG | 0.403503 | tig0018619:-2951 | Msa1368080:intron |
| TTACTGACTGCAAATATGTA+TGG | 0.407567 | tig0018619:+3284 | Msa1368080:intergenic |
| TTCATCGTTGAAAATTCATT+CGG | 0.410426 | tig0018619:-5347 | Msa1368080:five_prime_UTR |
| GTTGAAGGAAGCCATGGTTA+TGG | 0.412051 | tig0018619:+5309 | Msa1368080:intergenic |
| CTTGTGCGGATTCCTAATAT+AGG | 0.420177 | tig0018619:-1720 | Msa1368080:three_prime_UTR |
| CCCCAATGCTATCAAAGTCT+TGG | 0.420198 | tig0018619:+4394 | None:intergenic |
| GAATGGCTTAGATCTATTGA+TGG | 0.425560 | tig0018619:-1553 | None:intergenic |
| GCCCAAGACTTTGATAGCAT+TGG | 0.431971 | tig0018619:-4396 | Msa1368080:CDS |
| AACTAACAGGGATCTGAGTT+AGG | 0.444874 | tig0018619:-1828 | Msa1368080:three_prime_UTR |
| TGTTCAAAATCTTACTGCTC+AGG | 0.451766 | tig0018619:-3888 | Msa1368080:intron |
| TGCCGTTAAAGAAGGTGCTT+TGG | 0.453623 | tig0018619:+3077 | Msa1368080:intergenic |
| ATTGTATCAATTCCTGGAGC+AGG | 0.479754 | tig0018619:+4363 | Msa1368080:intergenic |
| GAAAATCCAGAAGGAGTTGA+AGG | 0.482193 | tig0018619:+5294 | Msa1368080:intergenic |
| ACAAGCAGACGATGATCAAC+AGG | 0.483999 | tig0018619:+3908 | Msa1368080:intergenic |
| CCCAATGCTATCAAAGTCTT+GGG | 0.484284 | tig0018619:+4395 | Msa1368080:intergenic |
| TTAAAGAAGGTGCTTTGGTA+TGG | 0.496640 | tig0018619:+3082 | Msa1368080:intergenic |
| TGAATACAATGCAGTGGTTA+CGG | 0.500104 | tig0018619:-4226 | Msa1368080:intron |
| AAAGTAGCTTGCGCTGAGGC+TGG | 0.500206 | tig0018619:+3308 | Msa1368080:intergenic |
| TACAATGCAGTGGTTACGGC+TGG | 0.500546 | tig0018619:-4222 | Msa1368080:intron |
| GGAAGTGATATTGGCGTCGT+TGG | 0.517650 | tig0018619:-4426 | Msa1368080:CDS |
| TTCAACAGTGCCGTTAAAGA+AGG | 0.525152 | tig0018619:+3069 | Msa1368080:intergenic |
| AGGGCTCCTAAAGTTGAAGT+TGG | 0.526588 | tig0018619:-2252 | Msa1368080:CDS |
| ACTTTAAACTACAACACAAA+AGG | 0.527968 | tig0018619:+1896 | Msa1368080:intergenic |
| ACTGTTGAAGTTGTTGAAGC+TGG | 0.536900 | tig0018619:-3055 | Msa1368080:CDS |
| AAAAGCTCAACCTCATTGGA+AGG | 0.541243 | tig0018619:+1861 | Msa1368080:intergenic |
| TCCATAGCCCCAGGAGGACA+AGG | 0.542721 | tig0018619:+2981 | Msa1368080:intergenic |
| TTCAACAGACGAATGGCTAC+AGG | 0.544409 | tig0018619:-2211 | Msa1368080:intron |
| TACTGACTGCAAATATGTAT+GGG | 0.546293 | tig0018619:+3285 | Msa1368080:intergenic |
| GCTAGGTGCCAGTCAGATGA+AGG | 0.552570 | tig0018619:-4471 | Msa1368080:CDS |
| CTCTCTCAAACTAATTAACA+TGG | 0.554482 | tig0018619:+1950 | Msa1368080:intergenic |
| TGAGAGAGCACAAGGAATTG+TGG | 0.554631 | tig0018619:-1935 | Msa1368080:three_prime_UTR |
| GATTGCAACAACATTCAAGC+TGG | 0.561649 | tig0018619:+3949 | Msa1368080:intergenic |
| GACCATGAATCCATAGCCCC+AGG | 0.564710 | tig0018619:+2972 | Msa1368080:intergenic |
| TTGCCCTCCTTGTCCTCCTG+GGG | 0.570226 | tig0018619:-2988 | Msa1368080:CDS |
| AACAGGGATCTGAGTTAGGA+AGG | 0.571431 | tig0018619:-1824 | Msa1368080:three_prime_UTR |
| GTGGATACTACTACTGAAGA+AGG | 0.575203 | tig0018619:-4447 | Msa1368080:CDS |
| AATTAGTTTGAGAGAGCACA+AGG | 0.581246 | tig0018619:-1943 | Msa1368080:three_prime_UTR |
| TGATATTGGCGTCGTTGGTG+AGG | 0.582105 | tig0018619:-4421 | Msa1368080:CDS |
| GAAGACACAGAGCTGCTTGT+GGG | 0.585122 | tig0018619:-4198 | Msa1368080:CDS |
| TATCCACACCTTCATCTGAC+TGG | 0.588486 | tig0018619:+4463 | Msa1368080:intergenic |
| TCCAGGGAACTGCATATACT+CGG | 0.598284 | tig0018619:-2059 | Msa1368080:intron |
| TAAACTACAACACAAAAGGC+AGG | 0.598642 | tig0018619:+1900 | Msa1368080:intergenic |
| AGAAGCAAACCTTGAATGAA+CGG | 0.599882 | tig0018619:+5244 | Msa1368080:intergenic |
| AAGGAAGCCATGGTTATGGT+TGG | 0.614728 | tig0018619:+5313 | Msa1368080:intergenic |
| GAAGGAGTTGAAGGAAGCCA+TGG | 0.615324 | tig0018619:+5303 | Msa1368080:intergenic |
| AAAGCTCAACCTCATTGGAA+GGG | 0.619858 | tig0018619:+1862 | Msa1368080:intergenic |
| TAACACACCAACCATAACCA+TGG | 0.624873 | tig0018619:-5320 | Msa1368080:exon |
| CCGACAAGATCAAAACTCCC+AGG | 0.627060 | tig0018619:+3133 | Msa1368080:intergenic |
| CAGATGCTTCAACAGACGAA+TGG | 0.628599 | tig0018619:-2218 | Msa1368080:CDS |
| AGAAGACACAGAGCTGCTTG+TGG | 0.639497 | tig0018619:-4199 | Msa1368080:CDS |
| GTTACATCTCTAGTCATGTG+TGG | 0.642453 | tig0018619:+1976 | Msa1368080:intergenic |
| TAGCCCCAGGAGGACAAGGA+GGG | 0.644555 | tig0018619:+2985 | Msa1368080:intergenic |
| GTTGAAGTTGTTGAAGCTGG+TGG | 0.646915 | tig0018619:-3052 | Msa1368080:CDS |
| GTGCCAGTCAGATGAAGGTG+TGG | 0.647403 | tig0018619:-4466 | Msa1368080:CDS |
| GAATGAACGGTGAAGCGATG+AGG | 0.649425 | tig0018619:+5257 | Msa1368080:intergenic |
| AGCGAGAGAGAAAATCCAGA+AGG | 0.652741 | tig0018619:+5285 | Msa1368080:intergenic |
| TTTATGGGAAGATATTAGGG+TGG | 0.658062 | tig0018619:-1661 | Msa1368080:three_prime_UTR |
| CCAAGACTTTGATAGCATTG+GGG | 0.668986 | tig0018619:-4394 | Msa1368080:CDS |
| ATAGCCCCAGGAGGACAAGG+AGG | 0.677509 | tig0018619:+2984 | Msa1368070:intergenic |
| GCAGACGATGATCAACAGGA+AGG | 0.726473 | tig0018619:+3912 | Msa1368070:intergenic |
| CATGAATCCATAGCCCCAGG+AGG | 0.732654 | tig0018619:+2975 | Msa1368070:intergenic |
| TGGGAAAGTAGCTTGCGCTG+AGG | 0.756303 | tig0018619:+3304 | Msa1368070:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAATTGGTTTTTTATTT+TGG | - | tig0018619:1848-1867 | Msa1368080:three_prime_UTR | 10.0% |
| !!! | AAAAATTGGTTTTTTATTTT+GGG | - | tig0018619:1849-1868 | Msa1368080:three_prime_UTR | 10.0% |
| !!! | TTATTTTATTTTTTGATCAA+AGG | - | tig0018619:1998-2017 | Msa1368080:three_prime_UTR | 10.0% |
| !!! | TATTTTATTTTTTGATCAAA+GGG | - | tig0018619:1999-2018 | Msa1368080:three_prime_UTR | 10.0% |
| !! | TTCAATTAATATTATATCAA+TGG | + | tig0018619:5349-5368 | Msa1368080:intergenic | 10.0% |
| !! | TTGATATAATATTAATTGAA+TGG | - | tig0018619:5349-5368 | Msa1368080:five_prime_UTR | 10.0% |
| !! | AAAATAAAAAAGAAGCAATT+GGG | + | tig0018619:1780-1799 | Msa1368080:intergenic | 15.0% |
| !! | AAAAATAAAAAAGAAGCAAT+TGG | + | tig0018619:1781-1800 | Msa1368080:intergenic | 15.0% |
| !!! | AAAATTGGTTTTTTATTTTG+GGG | - | tig0018619:1850-1869 | Msa1368080:three_prime_UTR | 15.0% |
| !!! | AAAGATCACATTTTTAATAT+TGG | - | tig0018619:1968-1987 | Msa1368080:three_prime_UTR | 15.0% |
| !!! | AAGATCACATTTTTAATATT+GGG | - | tig0018619:1969-1988 | Msa1368080:three_prime_UTR | 15.0% |
| !!! | TATTTTGATCTATTTTTGAA+AGG | - | tig0018619:2079-2098 | Msa1368080:intron | 15.0% |
| !!! | CTTTTAATATAGATTTCAAA+TGG | - | tig0018619:2134-2153 | Msa1368080:intron | 15.0% |
| !!! | TTACATTTTGCAAAATTTTT+TGG | + | tig0018619:2592-2611 | Msa1368080:intergenic | 15.0% |
| !!! | AAAAAATTTTGCAAAATGTA+AGG | - | tig0018619:2591-2610 | Msa1368080:intron | 15.0% |
| !! | AAAGAATGTAAAAAAAGAAA+AGG | + | tig0018619:2864-2883 | Msa1368080:intergenic | 15.0% |
| !!! | TTCTTTTTTTACATTCTTTT+TGG | - | tig0018619:2865-2884 | Msa1368080:intron | 15.0% |
| !! | GTATTCAATTTACAAAATTA+AGG | - | tig0018619:4109-4128 | Msa1368080:intron | 15.0% |
| !! | AAAATAGAAAATATTTCACA+AGG | + | tig0018619:4144-4163 | Msa1368080:intergenic | 15.0% |
| !! | TATATTATCTCTATACTTAT+TGG | - | tig0018619:4749-4768 | Msa1368080:intron | 15.0% |
| !!! | TAAATCTGTATCTTTTTAGA+TGG | - | tig0018619:2295-2314 | Msa1368080:intron | 20.0% |
| !! | ATGAACATCTAAATTAAACT+TGG | - | tig0018619:3067-3086 | Msa1368080:CDS | 20.0% |
| !! | TCAAATAATAGCAAATTATC+TGG | + | tig0018619:4018-4037 | Msa1368080:intergenic | 20.0% |
| !!! | TTTGCTAATTTTTCTCATAA+TGG | - | tig0018619:4056-4075 | Msa1368080:intron | 20.0% |
| !!! | TTTTTTTTTTCACAGTAAAC+AGG | - | tig0018619:4374-4393 | Msa1368080:CDS | 20.0% |
| !!! | TTTTTTTTTCACAGTAAACA+GGG | - | tig0018619:4375-4394 | Msa1368080:CDS | 20.0% |
| !!! | TATTTTATCAGAAAACAAAG+AGG | - | tig0018619:4647-4666 | Msa1368080:intron | 20.0% |
| !!! | ATTTTATCAGAAAACAAAGA+GGG | - | tig0018619:4648-4667 | Msa1368080:intron | 20.0% |
| !!! | TTTTCTAAGAAAAAACTAAC+AGG | - | tig0018619:5078-5097 | Msa1368080:intron | 20.0% |
| !!! | TTTCTAAGAAAAAACTAACA+GGG | - | tig0018619:5079-5098 | Msa1368080:intron | 20.0% |
| !!! | TTTTTTTTGTTTATCTTGTG+CGG | - | tig0018619:5185-5204 | Msa1368080:intron | 20.0% |
| !!! | ATTCTCTGGTTTTATATTTA+TGG | - | tig0018619:5242-5261 | Msa1368080:intron | 20.0% |
| !!! | TTCTCTGGTTTTATATTTAT+GGG | - | tig0018619:5243-5262 | Msa1368080:intron | 20.0% |
| !! | TATATTTATGGGAAGATATT+AGG | - | tig0018619:5254-5273 | Msa1368080:CDS | 20.0% |
| !! | ATATTTATGGGAAGATATTA+GGG | - | tig0018619:5255-5274 | Msa1368080:CDS | 20.0% |
| ! | TTCATCGTTGAAAATTCATT+CGG | - | tig0018619:1572-1591 | Msa1368080:three_prime_UTR | 25.0% |
| ! | CAAATGGATCATAGATAAAA+CGG | + | tig0018619:1720-1739 | Msa1368080:intergenic | 25.0% |
| ! | TAACTTCAAACTAGTAATGT+AGG | + | tig0018619:1938-1957 | Msa1368080:intergenic | 25.0% |
| ! | AATGGAATTCCTAATTTAAG+TGG | - | tig0018619:2152-2171 | Msa1368080:intron | 25.0% |
| ! | TATTTGCAACCACTTAAATT+AGG | + | tig0018619:2164-2183 | Msa1368080:intergenic | 25.0% |
| ! | TAACGGTAATTCAATCATAT+TGG | - | tig0018619:2753-2772 | Msa1368080:intron | 25.0% |
| ! | ATTCAATCATATTGGATACT+TGG | - | tig0018619:2761-2780 | Msa1368080:intron | 25.0% |
| ! | TTATTTCATGTGCTAATAAC+AGG | - | tig0018619:2942-2961 | Msa1368080:intron | 25.0% |
| ! | AAATTCCCATTTCGTATAAA+TGG | + | tig0018619:3144-3163 | Msa1368080:intergenic | 25.0% |
| ! | ATATATCCTAGCAAAATCTT+TGG | + | tig0018619:3409-3428 | Msa1368080:intergenic | 25.0% |
| ! | GAGATCAATAAGTATATGTA+TGG | + | tig0018619:3736-3755 | Msa1368080:intergenic | 25.0% |
| ! | TCAAATACAAAACCTATCTA+AGG | - | tig0018619:3968-3987 | Msa1368080:intron | 25.0% |
| ! | TAGATATTACTACCTTAGAT+AGG | + | tig0018619:3983-4002 | Msa1368080:intergenic | 25.0% |
| ! | TTAGCAAATTCAAAATGTGA+AGG | + | tig0018619:4044-4063 | Msa1368080:intergenic | 25.0% |
| ! | AATATTTCACAAGGTAAACA+GGG | + | tig0018619:4135-4154 | Msa1368080:intergenic | 25.0% |
| ! | AAATATTTCACAAGGTAAAC+AGG | + | tig0018619:4136-4155 | Msa1368080:intergenic | 25.0% |
| !!! | GAACAAATATGTGCATTTTT+TGG | - | tig0018619:4230-4249 | Msa1368080:intron | 25.0% |
| ! | GATGAAGGAAATATTAAAGA+CGG | + | tig0018619:4596-4615 | Msa1368080:intergenic | 25.0% |
| ! | ATATGAAAAACTGAACAACA+TGG | + | tig0018619:4778-4797 | Msa1368080:intergenic | 25.0% |
| ! | ACTTTAAACTACAACACAAA+AGG | + | tig0018619:5026-5045 | Msa1368080:intergenic | 25.0% |
| ! | ATTATATCAATGGCTGAAAA+TGG | + | tig0018619:5339-5358 | Msa1368080:intergenic | 25.0% |
| TAAAAAAGAAGCAATTGGGT+CGG | + | tig0018619:1776-1795 | Msa1368080:intergenic | 30.0% | |
| ! | TTTTTATGCTATGTGCATGA+TGG | - | tig0018619:2393-2412 | Msa1368080:intron | 30.0% |
| ACACTTATTGTATCAATTCC+TGG | + | tig0018619:2565-2584 | Msa1368080:intergenic | 30.0% | |
| TTTGTATGAATACAATGCAG+TGG | - | tig0018619:2687-2706 | Msa1368080:intron | 30.0% | |
| CTTGTGGGTGTAAAAAATAA+CGG | - | tig0018619:2736-2755 | Msa1368080:intron | 30.0% | |
| GAAGATTAAGATTGACTACA+AGG | + | tig0018619:3100-3119 | Msa1368080:intergenic | 30.0% | |
| TGAAAGCCATTTATACGAAA+TGG | - | tig0018619:3135-3154 | Msa1368080:CDS | 30.0% | |
| GAAAGCCATTTATACGAAAT+GGG | - | tig0018619:3136-3155 | Msa1368080:CDS | 30.0% | |
| ! | TGCAATCTAATGCTCATTTT+TGG | + | tig0018619:3357-3376 | Msa1368080:intergenic | 30.0% |
| TTTGCTAGGATATATGATGT+CGG | - | tig0018619:3414-3433 | Msa1368080:intron | 30.0% | |
| ! | TGATTTTGCATTTCTTGTGA+AGG | - | tig0018619:3467-3486 | Msa1368080:intron | 30.0% |
| CATTTCTTGTGAAGGAAATA+CGG | - | tig0018619:3475-3494 | Msa1368080:intron | 30.0% | |
| ! | TATTGTGTACTGTCATTTAC+TGG | + | tig0018619:3536-3555 | Msa1368080:intergenic | 30.0% |
| !!! | ACTTTTTTCTTTCTGATTGC+AGG | - | tig0018619:3568-3587 | Msa1368080:intron | 30.0% |
| ! | TACTGACTGCAAATATGTAT+GGG | + | tig0018619:3637-3656 | Msa1368080:intergenic | 30.0% |
| ! | TTACTGACTGCAAATATGTA+TGG | + | tig0018619:3638-3657 | Msa1368080:intergenic | 30.0% |
| TCTCATAATGGTTTATGAAG+AGG | - | tig0018619:4068-4087 | Msa1368080:intron | 30.0% | |
| ! | AAACGTTTTCCAATACCAAA+AGG | - | tig0018619:4491-4510 | Msa1368080:intron | 30.0% |
| AATCAAACGTCAGAAGTTTA+GGG | + | tig0018619:4517-4536 | Msa1368080:intergenic | 30.0% | |
| AAATCAAACGTCAGAAGTTT+AGG | + | tig0018619:4518-4537 | Msa1368080:intergenic | 30.0% | |
| TAAACTTCTGACGTTTGATT+TGG | - | tig0018619:4517-4536 | Msa1368080:intron | 30.0% | |
| !! | TTTTCTTTAAAAGCACAAGC+TGG | + | tig0018619:4557-4576 | Msa1368080:intergenic | 30.0% |
| CTCTCTCAAACTAATTAACA+TGG | + | tig0018619:4972-4991 | Msa1368080:intergenic | 30.0% | |
| !! | AGGATAGAACTTTTGAAAAG+TGG | - | tig0018619:5115-5134 | Msa1368080:intron | 30.0% |
| ACAGACTAGAAACCTATATT+AGG | + | tig0018619:5214-5233 | Msa1368080:intergenic | 30.0% | |
| AGAAGCAAACCTTGAATGAA+CGG | + | tig0018619:1678-1697 | Msa1368080:intergenic | 35.0% | |
| TTTGCATGCATTGTGATCTT+TGG | - | tig0018619:1799-1818 | Msa1368080:three_prime_UTR | 35.0% | |
| !!! | TGGGGTATTTTGATCTTTGT+TGG | - | tig0018619:1868-1887 | Msa1368080:three_prime_UTR | 35.0% |
| !!! | GGGGTATTTTGATCTTTGTT+GGG | - | tig0018619:1869-1888 | Msa1368080:three_prime_UTR | 35.0% |
| GCATTGTTTAATCTTGTGCA+TGG | - | tig0018619:2021-2040 | Msa1368080:exon | 35.0% | |
| TTAAGTGGTTGCAAATACTG+AGG | - | tig0018619:2167-2186 | Msa1368080:intron | 35.0% | |
| ACTGAGGTAGAGTTATTTGA+AGG | - | tig0018619:2183-2202 | Msa1368080:intron | 35.0% | |
| !!! | TGTTATTTTACTTGCCCTGT+CGG | - | tig0018619:2344-2363 | Msa1368080:intron | 35.0% |
| ! | GTAATTTGCAAAATCCGACA+GGG | + | tig0018619:2361-2380 | Msa1368080:intergenic | 35.0% |
| ! | AGTAATTTGCAAAATCCGAC+AGG | + | tig0018619:2362-2381 | Msa1368080:intergenic | 35.0% |
| !! | TGCATGATGGTTTTTGATTG+TGG | - | tig0018619:2406-2425 | Msa1368080:intron | 35.0% |
| !! | TTTTCCATTTGCTAGTTGCT+AGG | - | tig0018619:2431-2450 | Msa1368080:intron | 35.0% |
| ACTGAAGAAGGAAGTGATAT+TGG | - | tig0018619:2484-2503 | Msa1368080:intron | 35.0% | |
| TGAATACAATGCAGTGGTTA+CGG | - | tig0018619:2693-2712 | Msa1368080:intron | 35.0% | |
| CTTGAATGTTGTTGCAATCA+AGG | - | tig0018619:2974-2993 | Msa1368080:CDS | 35.0% | |
| TGTTCAAAATCTTACTGCTC+AGG | - | tig0018619:3031-3050 | Msa1368080:CDS | 35.0% | |
| GTATATTGTGTTCCCTTGAA+AGG | - | tig0018619:3203-3222 | Msa1368080:intron | 35.0% | |
| ! | GAGGATTTGAAATTACTCCA+AGG | + | tig0018619:3231-3250 | Msa1368080:intergenic | 35.0% |
| !!! | TAATGCTCATTTTTGGCACA+GGG | + | tig0018619:3350-3369 | Msa1368080:intergenic | 35.0% |
| ! | AAGTAGCCAAAGATTTTGCT+AGG | - | tig0018619:3400-3419 | Msa1368080:intron | 35.0% |
| ACATATAGAACTCCTTCAGA+TGG | + | tig0018619:3440-3459 | Msa1368080:intergenic | 35.0% | |
| ! | TGATTGCAGGTTTTCAACAA+TGG | - | tig0018619:3581-3600 | Msa1368080:intron | 35.0% |
| !! | TTAAAGAAGGTGCTTTGGTA+TGG | + | tig0018619:3840-3859 | Msa1368080:intergenic | 35.0% |
| ! | TACCAAAGCACCTTCTTTAA+CGG | - | tig0018619:3840-3859 | Msa1368080:intron | 35.0% |
| TCTGTCTTTCTTGTTACTCT+TGG | - | tig0018619:3906-3925 | Msa1368080:CDS | 35.0% | |
| GCAAATTCAAAATGTGAAGG+CGG | + | tig0018619:4041-4060 | Msa1368080:intergenic | 35.0% | |
| AGAAGATGAAATGCTAGCTA+GGG | + | tig0018619:4275-4294 | Msa1368080:intergenic | 35.0% | |
| GAAGGAAATATTAAAGACGG+AGG | + | tig0018619:4593-4612 | Msa1368080:intergenic | 35.0% | |
| CTAGTTCCAACTTCAACTTT+AGG | + | tig0018619:4676-4695 | Msa1368080:intergenic | 35.0% | |
| ! | AGATGTCTGGTTTATGCTAT+AGG | + | tig0018619:4806-4825 | Msa1368080:intergenic | 35.0% |
| GATATTTCGTTTCAGATGTC+TGG | + | tig0018619:4819-4838 | Msa1368080:intergenic | 35.0% | |
| ! | AATTAGTTTGAGAGAGCACA+AGG | - | tig0018619:4976-4995 | Msa1368080:intron | 35.0% |
| TAAACTACAACACAAAAGGC+AGG | + | tig0018619:5022-5041 | Msa1368080:intergenic | 35.0% | |
| ! | TTTTTCTTTCCCTTCCAATG+AGG | - | tig0018619:5048-5067 | Msa1368080:intron | 35.0% |
| TAGAAAAAGCTCAACCTCAT+TGG | + | tig0018619:5065-5084 | Msa1368080:intergenic | 35.0% | |
| ! | GTCTGTGTTTTATCATTCTC+TGG | - | tig0018619:5228-5247 | Msa1368080:intron | 35.0% |
| TTTATGGGAAGATATTAGGG+TGG | - | tig0018619:5258-5277 | Msa1368080:CDS | 35.0% | |
| TAACACACCAACCATAACCA+TGG | - | tig0018619:1599-1618 | Msa1368080:three_prime_UTR | 40.0% | |
| GAAAATCCAGAAGGAGTTGA+AGG | + | tig0018619:1628-1647 | Msa1368080:intergenic | 40.0% | |
| CATGCAGAAAACGAAGCAAA+TGG | + | tig0018619:1736-1755 | Msa1368080:intergenic | 40.0% | |
| CAAACTAGTAATGTAGGTGC+AGG | + | tig0018619:1932-1951 | Msa1368080:intergenic | 40.0% | |
| TGGAAGCTTGATTCAGCATT+TGG | - | tig0018619:2315-2334 | Msa1368080:intron | 40.0% | |
| GTGGATACTACTACTGAAGA+AGG | - | tig0018619:2472-2491 | Msa1368080:intron | 40.0% | |
| CCCAATGCTATCAAAGTCTT+GGG | + | tig0018619:2527-2546 | Msa1368080:intergenic | 40.0% | |
| ! | CCCAAGACTTTGATAGCATT+GGG | - | tig0018619:2524-2543 | Msa1368080:intron | 40.0% |
| ! | CCAAGACTTTGATAGCATTG+GGG | - | tig0018619:2525-2544 | Msa1368080:intron | 40.0% |
| ATTGTATCAATTCCTGGAGC+AGG | + | tig0018619:2559-2578 | Msa1368080:intergenic | 40.0% | |
| AATGTAAGGATCGTTCTGTC+TGG | - | tig0018619:2605-2624 | Msa1368080:intron | 40.0% | |
| AAAGCTTGAAATCACAGTGC+TGG | + | tig0018619:2792-2811 | Msa1368080:intergenic | 40.0% | |
| GATTGCAACAACATTCAAGC+TGG | + | tig0018619:2973-2992 | Msa1368080:intergenic | 40.0% | |
| CTTACTGCTCAGGTAGTAAT+TGG | - | tig0018619:3041-3060 | Msa1368080:CDS | 40.0% | |
| ATGGGAATTTCAAATCCTCC+TGG | - | tig0018619:3154-3173 | Msa1368080:intron | 40.0% | |
| TTTCAAATCCTCCTGGAAAG+AGG | - | tig0018619:3161-3180 | Msa1368080:intron | 40.0% | |
| TTACTATCCAACCTCTTTCC+AGG | + | tig0018619:3175-3194 | Msa1368080:intergenic | 40.0% | |
| ! | TACTCCAAGGTACCTTTCAA+GGG | + | tig0018619:3218-3237 | Msa1368080:intergenic | 40.0% |
| ! | TTACTCCAAGGTACCTTTCA+AGG | + | tig0018619:3219-3238 | Msa1368080:intergenic | 40.0% |
| TTTGTCACGTGTAGATCAAC+AGG | + | tig0018619:3253-3272 | Msa1368080:intergenic | 40.0% | |
| GATCTACACGTGACAAAGAT+TGG | - | tig0018619:3256-3275 | Msa1368080:intron | 40.0% | |
| TAAAAGCCATCTCCTACAGA+TGG | + | tig0018619:3290-3309 | Msa1368080:intergenic | 40.0% | |
| !!! | CTAATGCTCATTTTTGGCAC+AGG | + | tig0018619:3351-3370 | Msa1368080:intergenic | 40.0% |
| GTCATTTACTGGATCAGAAC+AGG | + | tig0018619:3525-3544 | Msa1368080:intergenic | 40.0% | |
| TGCAGTCAGTAAATTCTTGC+AGG | - | tig0018619:3646-3665 | Msa1368080:intron | 40.0% | |
| ! | AGGTATTGCCATTACCTTGA+AGG | - | tig0018619:3666-3685 | Msa1368080:intron | 40.0% |
| ACTAAAAGCAGTTGCCTTCA+AGG | + | tig0018619:3683-3702 | Msa1368080:intergenic | 40.0% | |
| ! | TTCAACAGTGCCGTTAAAGA+AGG | + | tig0018619:3853-3872 | Msa1368080:intergenic | 40.0% |
| ACTGTTGAAGTTGTTGAAGC+TGG | - | tig0018619:3864-3883 | Msa1368080:intron | 40.0% | |
| GAGAAGATGAAATGCTAGCT+AGG | + | tig0018619:4276-4295 | Msa1368080:intergenic | 40.0% | |
| TCATCTTCTCTCGATCACAA+TGG | - | tig0018619:4286-4305 | Msa1368080:intron | 40.0% | |
| !! | AGTTTAGGGCCTTTTGGTAT+TGG | + | tig0018619:4503-4522 | Msa1368080:intergenic | 40.0% |
| GCAAACACGAGAATATCAGA+GGG | + | tig0018619:4618-4637 | Msa1368080:intergenic | 40.0% | |
| AGCAAACACGAGAATATCAG+AGG | + | tig0018619:4619-4638 | Msa1368080:intergenic | 40.0% | |
| TTTGCCTTGTATTGTCATCC+AGG | - | tig0018619:4843-4862 | Msa1368080:intron | 40.0% | |
| TTGCCTTGTATTGTCATCCA+GGG | - | tig0018619:4844-4863 | Msa1368080:intron | 40.0% | |
| GTTACATCTCTAGTCATGTG+TGG | + | tig0018619:4946-4965 | Msa1368080:intergenic | 40.0% | |
| AAAGCTCAACCTCATTGGAA+GGG | + | tig0018619:5060-5079 | Msa1368080:intergenic | 40.0% | |
| AAAAGCTCAACCTCATTGGA+AGG | + | tig0018619:5061-5080 | Msa1368080:intergenic | 40.0% | |
| AACTAACAGGGATCTGAGTT+AGG | - | tig0018619:5091-5110 | Msa1368080:intron | 40.0% | |
| CTTGTGCGGATTCCTAATAT+AGG | - | tig0018619:5199-5218 | Msa1368080:intron | 40.0% | |
| AAGGAAGCCATGGTTATGGT+TGG | + | tig0018619:1609-1628 | Msa1368080:intergenic | 45.0% | |
| GTTGAAGGAAGCCATGGTTA+TGG | + | tig0018619:1613-1632 | Msa1368080:intergenic | 45.0% | |
| AGCGAGAGAGAAAATCCAGA+AGG | + | tig0018619:1637-1656 | Msa1368080:intergenic | 45.0% | |
| ATCGCTTCACCGTTCATTCA+AGG | - | tig0018619:1666-1685 | Msa1368080:three_prime_UTR | 45.0% | |
| TTGAAGGAACGACGACAACA+TGG | - | tig0018619:2199-2218 | Msa1368080:intron | 45.0% | |
| TATCCACACCTTCATCTGAC+TGG | + | tig0018619:2459-2478 | Msa1368080:intergenic | 45.0% | |
| ! | GCCCAAGACTTTGATAGCAT+TGG | - | tig0018619:2523-2542 | Msa1368080:intron | 45.0% |
| CCCCAATGCTATCAAAGTCT+TGG | + | tig0018619:2528-2547 | Msa1368080:intergenic | 45.0% | |
| CGAAGCCAAGAGTCAAATCA+GGG | - | tig0018619:2888-2907 | Msa1368080:intron | 45.0% | |
| ! | AGAGACCCTGATTTGACTCT+TGG | + | tig0018619:2896-2915 | Msa1368080:intergenic | 45.0% |
| ACAAGCAGACGATGATCAAC+AGG | + | tig0018619:3014-3033 | Msa1368080:intergenic | 45.0% | |
| AAATCCTCCTGGAAAGAGGT+TGG | - | tig0018619:3165-3184 | Msa1368080:intron | 45.0% | |
| !! | TGTTCCCTTGAAAGGTACCT+TGG | - | tig0018619:3211-3230 | Msa1368080:intron | 45.0% |
| TTGGTCTACTTGCCATCTGT+AGG | - | tig0018619:3275-3294 | Msa1368080:CDS | 45.0% | |
| TACTTGCCATCTGTAGGAGA+TGG | - | tig0018619:3281-3300 | Msa1368080:CDS | 45.0% | |
| ATATGATGTCGGCCATCTGA+AGG | - | tig0018619:3425-3444 | Msa1368080:intron | 45.0% | |
| AGCAGTTGCCTTCAAGGTAA+TGG | + | tig0018619:3677-3696 | Msa1368080:intergenic | 45.0% | |
| !! | CCTGGGAGTTTTGATCTTGT+CGG | - | tig0018619:3786-3805 | Msa1368080:intron | 45.0% |
| !! | TGCCGTTAAAGAAGGTGCTT+TGG | + | tig0018619:3845-3864 | Msa1368080:intergenic | 45.0% |
| GTTGAAGTTGTTGAAGCTGG+TGG | - | tig0018619:3867-3886 | Msa1368080:intron | 45.0% | |
| !! | GTCAGAAGTTTAGGGCCTTT+TGG | + | tig0018619:4509-4528 | Msa1368080:intergenic | 45.0% |
| !! | TCTGACGTTTGATTTGGTCC+TGG | - | tig0018619:4523-4542 | Msa1368080:intron | 45.0% |
| CGAGAATATCAGAGGGATGA+AGG | + | tig0018619:4611-4630 | Msa1368080:intergenic | 45.0% | |
| AGGGCTCCTAAAGTTGAAGT+TGG | - | tig0018619:4667-4686 | Msa1368080:intron | 45.0% | |
| CAGATGCTTCAACAGACGAA+TGG | - | tig0018619:4701-4720 | Msa1368080:intron | 45.0% | |
| TTCAACAGACGAATGGCTAC+AGG | - | tig0018619:4708-4727 | Msa1368080:intron | 45.0% | |
| GTTCCCTGGATGACAATACA+AGG | + | tig0018619:4850-4869 | Msa1368080:intergenic | 45.0% | |
| TCCAGGGAACTGCATATACT+CGG | - | tig0018619:4860-4879 | Msa1368080:intron | 45.0% | |
| ! | TGAGAGAGCACAAGGAATTG+TGG | - | tig0018619:4984-5003 | Msa1368080:intron | 45.0% |
| AACAGGGATCTGAGTTAGGA+AGG | - | tig0018619:5095-5114 | Msa1368080:intron | 45.0% | |
| !!! | TTATAATTTGTATTAAAAAT+TGG | - | tig0018619:1835-1854 | Msa1368080:three_prime_UTR | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTTTG+AGG | - | tig0018619:2053-2072 | Msa1368080:CDS | 5.0% |
| GAAGGAGTTGAAGGAAGCCA+TGG | + | tig0018619:1619-1638 | Msa1368080:intergenic | 50.0% | |
| TGGCTTCCTTCAACTCCTTC+TGG | - | tig0018619:1619-1638 | Msa1368080:three_prime_UTR | 50.0% | |
| GAATGAACGGTGAAGCGATG+AGG | + | tig0018619:1665-1684 | Msa1368080:intergenic | 50.0% | |
| GGCACCTAGCAACTAGCAAA+TGG | + | tig0018619:2438-2457 | Msa1368080:intergenic | 50.0% | |
| GGAAGTGATATTGGCGTCGT+TGG | - | tig0018619:2493-2512 | Msa1368080:intron | 50.0% | |
| TGATATTGGCGTCGTTGGTG+AGG | - | tig0018619:2498-2517 | Msa1368080:intron | 50.0% | |
| TACAATGCAGTGGTTACGGC+TGG | - | tig0018619:2697-2716 | Msa1368080:intron | 50.0% | |
| AGAAGACACAGAGCTGCTTG+TGG | - | tig0018619:2720-2739 | Msa1368080:intron | 50.0% | |
| GAAGACACAGAGCTGCTTGT+GGG | - | tig0018619:2721-2740 | Msa1368080:intron | 50.0% | |
| GCGAAGCCAAGAGTCAAATC+AGG | - | tig0018619:2887-2906 | Msa1368080:intron | 50.0% | |
| GCAGACGATGATCAACAGGA+AGG | + | tig0018619:3010-3029 | Msa1368080:intergenic | 50.0% | |
| CTATCCAACCTCTTTCCAGG+AGG | + | tig0018619:3172-3191 | Msa1368080:intergenic | 50.0% | |
| GTCACGTGTAGATCAACAGG+AGG | + | tig0018619:3250-3269 | Msa1368080:intergenic | 50.0% | |
| TTTGGCACAGGGCAGTAACT+GGG | + | tig0018619:3339-3358 | Msa1368080:intergenic | 50.0% | |
| ! | TTTTGGCACAGGGCAGTAAC+TGG | + | tig0018619:3340-3359 | Msa1368080:intergenic | 50.0% |
| ! | TGATTTTTCCGTGTGCAGCC+TGG | - | tig0018619:3768-3787 | Msa1368080:intron | 50.0% |
| ! | GATTTTTCCGTGTGCAGCCT+GGG | - | tig0018619:3769-3788 | Msa1368080:intron | 50.0% |
| CCGACAAGATCAAAACTCCC+AGG | + | tig0018619:3789-3808 | Msa1368080:intergenic | 50.0% | |
| CACAAGCTGGAGCAATAACC+AGG | + | tig0018619:4544-4563 | Msa1368080:intergenic | 50.0% | |
| CAGACGAATGGCTACAGGTA+TGG | - | tig0018619:4713-4732 | Msa1368080:intron | 50.0% | |
| ACCGAGTATATGCAGTTCCC+TGG | + | tig0018619:4864-4883 | Msa1368080:intergenic | 50.0% | |
| GCTAGGTGCCAGTCAGATGA+AGG | - | tig0018619:2448-2467 | Msa1368080:intron | 55.0% | |
| GTGCCAGTCAGATGAAGGTG+TGG | - | tig0018619:2453-2472 | Msa1368080:intron | 55.0% | |
| ! | AAAGTAGCTTGCGCTGAGGC+TGG | + | tig0018619:3614-3633 | Msa1368080:intergenic | 55.0% |
| ! | TGGGAAAGTAGCTTGCGCTG+AGG | + | tig0018619:3618-3637 | Msa1368080:intergenic | 55.0% |
| CAAAACTCCCAGGCTGCACA+CGG | + | tig0018619:3779-3798 | Msa1368080:intergenic | 55.0% | |
| CATGAATCCATAGCCCCAGG+AGG | + | tig0018619:3947-3966 | Msa1368080:intergenic | 55.0% | |
| CTCCTGGGGCTATGGATTCA+TGG | - | tig0018619:3945-3964 | Msa1368080:CDS | 55.0% | |
| GACCATGAATCCATAGCCCC+AGG | + | tig0018619:3950-3969 | Msa1368080:intergenic | 55.0% | |
| ! | GGGGACTTTTCTCCTGCTCC+AGG | - | tig0018619:2544-2563 | Msa1368080:intron | 60.0% |
| AGTTGCCCTCCTTGTCCTCC+TGG | - | tig0018619:3929-3948 | Msa1368080:CDS | 60.0% | |
| GTTGCCCTCCTTGTCCTCCT+GGG | - | tig0018619:3930-3949 | Msa1368080:CDS | 60.0% | |
| TTGCCCTCCTTGTCCTCCTG+GGG | - | tig0018619:3931-3950 | Msa1368080:CDS | 60.0% | |
| TAGCCCCAGGAGGACAAGGA+GGG | + | tig0018619:3937-3956 | Msa1368080:intergenic | 60.0% | |
| ATAGCCCCAGGAGGACAAGG+AGG | + | tig0018619:3938-3957 | Msa1368080:intergenic | 60.0% | |
| TCCTTGTCCTCCTGGGGCTA+TGG | - | tig0018619:3937-3956 | Msa1368080:CDS | 60.0% | |
| TCCATAGCCCCAGGAGGACA+AGG | + | tig0018619:3941-3960 | Msa1368080:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018619 | gene | 1554 | 5387 | 1554 | ID=Msa1368080;Name=Msa1368080 |
| tig0018619 | mRNA | 1554 | 5387 | 1554 | ID=Msa1368080-mRNA-1;Parent=Msa1368080;Name=Msa1368080-mRNA-1;_AED=0.07;_eAED=0.07;_QI=64|1|1|1|1|1|8|472|258 |
| tig0018619 | exon | 1554 | 2076 | 1554 | ID=Msa1368080-mRNA-1:exon:316;Parent=Msa1368080-mRNA-1 |
| tig0018619 | exon | 2212 | 2283 | 2212 | ID=Msa1368080-mRNA-1:exon:315;Parent=Msa1368080-mRNA-1 |
| tig0018619 | exon | 2952 | 3155 | 2952 | ID=Msa1368080-mRNA-1:exon:314;Parent=Msa1368080-mRNA-1 |
| tig0018619 | exon | 3274 | 3351 | 3274 | ID=Msa1368080-mRNA-1:exon:313;Parent=Msa1368080-mRNA-1 |
| tig0018619 | exon | 3889 | 3977 | 3889 | ID=Msa1368080-mRNA-1:exon:312;Parent=Msa1368080-mRNA-1 |
| tig0018619 | exon | 4184 | 4234 | 4184 | ID=Msa1368080-mRNA-1:exon:311;Parent=Msa1368080-mRNA-1 |
| tig0018619 | exon | 4334 | 4495 | 4334 | ID=Msa1368080-mRNA-1:exon:310;Parent=Msa1368080-mRNA-1 |
| tig0018619 | exon | 5254 | 5387 | 5254 | ID=Msa1368080-mRNA-1:exon:309;Parent=Msa1368080-mRNA-1 |
| tig0018619 | five_prime_UTR | 5324 | 5387 | 5324 | ID=Msa1368080-mRNA-1:five_prime_utr;Parent=Msa1368080-mRNA-1 |
| tig0018619 | CDS | 5254 | 5323 | 5254 | ID=Msa1368080-mRNA-1:cds;Parent=Msa1368080-mRNA-1 |
| tig0018619 | CDS | 4334 | 4495 | 4334 | ID=Msa1368080-mRNA-1:cds;Parent=Msa1368080-mRNA-1 |
| tig0018619 | CDS | 4184 | 4234 | 4184 | ID=Msa1368080-mRNA-1:cds;Parent=Msa1368080-mRNA-1 |
| tig0018619 | CDS | 3889 | 3977 | 3889 | ID=Msa1368080-mRNA-1:cds;Parent=Msa1368080-mRNA-1 |
| tig0018619 | CDS | 3274 | 3351 | 3274 | ID=Msa1368080-mRNA-1:cds;Parent=Msa1368080-mRNA-1 |
| tig0018619 | CDS | 2952 | 3155 | 2952 | ID=Msa1368080-mRNA-1:cds;Parent=Msa1368080-mRNA-1 |
| tig0018619 | CDS | 2212 | 2283 | 2212 | ID=Msa1368080-mRNA-1:cds;Parent=Msa1368080-mRNA-1 |
| tig0018619 | CDS | 2026 | 2076 | 2026 | ID=Msa1368080-mRNA-1:cds;Parent=Msa1368080-mRNA-1 |
| tig0018619 | three_prime_UTR | 1554 | 2025 | 1554 | ID=Msa1368080-mRNA-1:three_prime_utr;Parent=Msa1368080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
