AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0430230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0430230 MtrunA17_Chr3g0134141 98.980 392 4 0 1 392 1 392 0.0 810
Msa0430230 MtrunA17_Chr3g0134141 36.491 285 164 4 26 294 114 397 1.69e-44 163
Msa0430230 MtrunA17_Chr1g0153181 79.045 377 78 1 17 392 25 401 0.0 627
Msa0430230 MtrunA17_Chr1g0153181 36.332 289 166 4 23 294 119 406 1.19e-49 177
Msa0430230 MtrunA17_Chr4g0044541 78.016 373 82 0 20 392 30 402 0.0 622
Msa0430230 MtrunA17_Chr4g0044541 36.170 282 163 3 113 393 35 300 2.89e-52 185
Msa0430230 MtrunA17_Chr4g0044541 35.473 296 168 5 26 300 124 417 2.78e-46 169
Msa0430230 MtrunA17_Chr1g0201151 61.990 392 143 2 8 393 9 400 2.82e-174 501
Msa0430230 MtrunA17_Chr1g0201151 29.612 412 243 9 26 413 120 508 3.39e-44 162
Msa0430230 MtrunA17_Chr6g0465751 62.141 383 134 3 17 392 12 390 3.44e-171 493
Msa0430230 MtrunA17_Chr6g0466501 61.125 391 138 4 12 392 4 390 1.04e-169 489
Msa0430230 MtrunA17_Chr6g0465691 62.300 313 113 2 82 393 1 309 9.86e-139 407
Msa0430230 MtrunA17_Chr6g0465691 33.935 277 169 4 26 289 33 308 3.65e-42 155
Msa0430230 MtrunA17_Chr6g0465691 33.480 227 128 4 24 229 118 342 1.11e-26 112
Msa0430230 MtrunA17_Chr0c09g0493511 61.538 312 115 2 82 392 1 308 4.82e-135 398
Msa0430230 MtrunA17_Chr0c09g0493511 35.018 277 166 4 26 289 33 308 2.66e-45 164
Msa0430230 MtrunA17_Chr0c09g0493511 35.821 201 110 3 24 207 118 316 1.69e-28 117
Msa0430230 MtrunA17_Chr7g0265341 51.752 371 179 0 17 387 63 433 1.75e-129 388
Msa0430230 MtrunA17_Chr6g0466451 59.797 296 117 2 98 392 1 295 6.57e-124 369
Msa0430230 MtrunA17_Chr6g0466451 36.713 286 162 5 26 294 17 300 5.31e-46 166
Msa0430230 MtrunA17_Chr6g0466451 36.019 211 109 6 24 215 105 308 3.73e-28 116
Msa0430230 MtrunA17_Chr6g0465631 59.797 296 117 2 98 392 1 295 7.24e-124 368
Msa0430230 MtrunA17_Chr6g0465631 36.713 286 162 5 26 294 17 300 5.59e-46 166
Msa0430230 MtrunA17_Chr6g0465631 36.019 211 109 6 24 215 105 308 3.73e-28 116
Msa0430230 MtrunA17_Chr1g0179701 47.244 381 191 3 12 392 56 426 7.41e-112 339
Msa0430230 MtrunA17_Chr1g0179701 35.890 326 176 7 105 413 55 364 5.82e-50 177
Msa0430230 MtrunA17_Chr1g0179701 33.692 279 172 3 26 292 152 429 3.14e-39 148
Msa0430230 MtrunA17_Chr1g0179701 32.979 188 113 2 24 199 241 427 3.48e-25 107
Msa0430230 MtrunA17_Chr3g0110211 40.476 168 97 3 25 190 26 192 2.61e-30 120
Msa0430230 MtrunA17_Chr3g0110211 31.937 191 118 6 105 292 18 199 2.04e-19 89.4
Msa0430230 MtrunA17_Chr3g0110211 32.447 188 107 5 206 390 28 198 7.36e-18 84.7
Msa0430230 MtrunA17_Chr2g0288251 28.517 263 161 9 25 265 61 318 7.65e-27 110
Msa0430230 MtrunA17_Chr2g0288251 25.912 274 179 8 114 374 62 324 2.99e-20 92.0
Msa0430230 MtrunA17_Chr2g0288251 30.387 181 99 7 18 180 153 324 8.92e-13 69.3
Msa0430230 MtrunA17_Chr2g0288251 24.413 213 149 5 175 384 32 235 8.46e-12 66.6
Msa0430230 MtrunA17_Chr4g0074711 27.536 276 171 10 13 265 62 331 3.23e-25 106
Msa0430230 MtrunA17_Chr4g0074711 24.648 284 199 8 114 387 76 354 5.09e-19 88.6
Msa0430230 MtrunA17_Chr1g0153871 26.515 264 185 5 113 372 98 356 1.74e-24 104
Msa0430230 MtrunA17_Chr1g0153871 28.462 260 162 7 25 265 98 352 2.95e-23 101
Msa0430230 MtrunA17_Chr1g0153871 32.044 181 101 4 19 182 185 360 9.84e-19 87.8
Msa0430230 MtrunA17_Chr3g0133651 25.874 286 183 8 25 286 94 374 1.50e-23 101
Msa0430230 MtrunA17_Chr3g0133651 26.132 287 190 8 99 372 76 353 5.56e-22 97.4
Msa0430230 MtrunA17_Chr8g0344491 27.143 280 162 7 22 268 60 330 2.37e-22 98.6
Msa0430230 MtrunA17_Chr8g0344491 26.829 287 175 9 103 369 57 328 9.10e-17 81.6
Msa0430230 MtrunA17_Chr8g0344491 23.837 172 112 4 204 374 63 216 1.65e-11 65.9
Msa0430230 MtrunA17_Chr2g0328791 25.887 282 164 7 25 266 16 292 3.09e-22 98.2
Msa0430230 MtrunA17_Chr2g0328791 25.946 185 123 5 204 385 16 189 8.50e-15 75.9
Msa0430230 MtrunA17_Chr4g0070231 27.698 278 159 7 22 266 44 312 4.61e-22 97.4
Msa0430230 MtrunA17_Chr4g0070231 28.239 301 183 11 97 376 31 319 9.81e-20 90.5
Msa0430230 MtrunA17_Chr3g0139111 26.786 280 164 7 25 271 61 332 4.85e-22 97.8
Msa0430230 MtrunA17_Chr3g0139111 26.163 172 108 4 204 374 61 214 1.51e-12 68.9
Msa0430230 MtrunA17_Chr4g0045221 26.429 280 162 8 25 265 117 391 6.60e-21 94.4
Msa0430230 MtrunA17_Chr4g0045221 25.606 289 174 10 114 372 118 395 3.05e-16 80.5
Msa0430230 MtrunA17_Chr4g0045221 27.064 218 145 6 197 406 110 321 3.14e-13 71.2
Msa0430230 MtrunA17_Chr6g0466541 36.478 159 66 3 237 395 2 125 9.57e-21 87.4
Msa0430230 MtrunA17_Chr6g0466541 37.415 147 65 5 145 289 1 122 5.79e-17 77.0
Msa0430230 MtrunA17_Chr0c09g0493521 59.701 67 21 1 17 77 12 78 7.80e-20 83.6
Msa0430230 MtrunA17_Chr6g0465621 64.286 56 20 0 25 80 26 81 2.79e-19 82.0
Msa0430230 MtrunA17_Chr6g0466441 64.286 56 20 0 25 80 26 81 2.79e-19 82.0
Msa0430230 MtrunA17_Chr0c09g0493581 57.353 68 23 1 17 78 12 79 4.84e-19 81.3
Msa0430230 MtrunA17_Chr4g0026301 27.888 251 163 7 17 261 105 343 6.16e-19 89.0
Msa0430230 MtrunA17_Chr6g0465701 51.220 82 31 2 12 84 4 85 8.27e-19 80.9
Msa0430230 MtrunA17_Chr7g0217261 28.287 251 162 7 17 261 344 582 2.11e-17 84.7
Msa0430230 MtrunA17_Chr3g0116631 31.183 186 117 5 205 387 111 288 3.24e-17 81.6
Msa0430230 MtrunA17_Chr3g0116631 28.889 180 121 3 112 284 109 288 3.42e-15 75.9
Msa0430230 MtrunA17_Chr3g0116631 28.000 175 104 4 26 184 111 279 1.84e-13 70.5
Msa0430230 MtrunA17_Chr3g0087481 33.146 178 108 6 205 378 62 232 1.35e-16 79.0
Msa0430230 MtrunA17_Chr3g0087481 26.744 172 112 4 26 184 62 232 2.82e-12 66.2
Msa0430230 MtrunA17_Chr3g0087481 27.027 185 119 5 104 278 57 235 7.65e-11 62.0
Msa0430230 MtrunA17_Chr7g0276201 24.303 251 169 6 18 260 100 337 1.77e-16 81.3
Msa0430230 MtrunA17_Chr7g0276201 26.370 292 179 11 107 389 99 363 3.56e-12 67.8
Msa0430230 MtrunA17_Chr7g0267571 27.684 177 104 3 26 182 111 283 1.24e-15 77.4
Msa0430230 MtrunA17_Chr7g0267571 30.882 204 125 7 178 376 91 283 2.03e-15 76.6
Msa0430230 MtrunA17_Chr8g0335981 23.413 252 174 7 26 268 217 458 2.92e-15 78.2
Msa0430230 MtrunA17_Chr1g0177101 27.830 212 127 5 26 224 110 308 4.51e-15 75.5
Msa0430230 MtrunA17_Chr1g0177101 30.114 176 112 5 205 376 110 278 1.57e-14 73.9
Msa0430230 MtrunA17_Chr4g0058151 30.645 186 115 5 205 387 124 298 6.06e-15 75.1
Msa0430230 MtrunA17_Chr4g0058151 27.545 167 112 3 26 184 124 289 6.84e-13 68.9
Msa0430230 MtrunA17_Chr8g0372111 25.769 260 163 9 26 270 420 664 9.56e-15 76.6
Msa0430230 MtrunA17_Chr7g0266451 24.046 262 170 10 17 269 96 337 2.12e-14 74.7
Msa0430230 MtrunA17_Chr1g0168601 32.716 162 94 3 225 384 84 232 6.89e-13 67.8
Msa0430230 MtrunA17_Chr2g0312971 29.480 173 104 6 25 184 114 281 7.86e-13 68.9
Msa0430230 MtrunA17_Chr5g0411091 28.272 191 124 6 197 384 91 271 8.39e-13 68.9
Msa0430230 MtrunA17_Chr5g0411091 27.692 195 129 4 113 301 97 285 3.28e-11 64.3
Msa0430230 MtrunA17_Chr1g0181111 28.708 209 135 4 192 388 73 279 1.69e-12 67.4
Msa0430230 MtrunA17_Chr7g0268551 28.061 196 109 5 205 390 18 191 3.94e-12 67.8
Msa0430230 MtrunA17_Chr7g0263001 41.975 81 46 1 308 387 37 117 5.00e-12 63.2
Msa0430230 MtrunA17_Chr4g0033701 30.508 177 92 6 198 374 22 167 1.34e-11 66.6
Msa0430230 MtrunA17_Chr1g0211191 28.188 149 89 2 37 168 83 230 3.31e-11 64.7
Msa0430230 MtrunA17_Chr3g0119311 38.889 72 43 1 114 184 38 109 5.74e-11 60.1
Msa0430230 MtrunA17_Chr3g0101061 25.568 176 115 6 205 371 42 210 7.60e-11 63.9
Msa0430230 MtrunA17_Chr8g0383661 31.325 166 100 6 113 266 203 366 7.79e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0430230 AT4G34110.1 71.545 369 105 0 24 392 36 404 0.0 573
Msa0430230 AT4G34110.1 36.491 285 164 4 26 294 126 409 1.69e-51 183
Msa0430230 AT4G34110.1 35.172 290 171 3 110 398 34 307 2.65e-50 179
Msa0430230 AT4G34110.1 33.962 212 122 4 19 214 210 419 2.57e-27 114
Msa0430230 AT1G49760.1 69.189 370 114 0 23 392 44 413 0.0 551
Msa0430230 AT1G49760.1 37.193 285 162 4 26 294 135 418 1.20e-51 184
Msa0430230 AT1G49760.2 69.189 370 114 0 23 392 44 413 0.0 551
Msa0430230 AT1G49760.2 37.193 285 162 4 26 294 135 418 1.20e-51 184
Msa0430230 AT2G23350.1 66.938 369 122 0 25 393 47 415 1.87e-175 505
Msa0430230 AT2G23350.1 37.895 285 160 4 26 294 136 419 1.37e-48 175
Msa0430230 AT1G22760.1 62.299 374 138 2 24 395 49 421 4.62e-169 489
Msa0430230 AT1G71770.1 62.032 374 139 2 24 395 59 431 1.40e-165 481
Msa0430230 AT1G71770.2 62.032 374 139 2 24 395 59 431 1.40e-165 481
Msa0430230 AT1G34140.1 53.628 317 143 2 82 397 1 314 1.07e-110 331
Msa0430230 AT1G34140.1 35.842 279 162 4 26 289 33 309 1.25e-43 157
Msa0430230 AT1G34140.1 32.000 200 113 4 24 204 119 314 1.22e-24 105
Msa0430230 AT2G36660.1 46.011 376 201 1 22 397 22 395 1.14e-109 335
Msa0430230 AT2G36660.1 32.212 208 124 3 24 215 201 407 1.20e-25 109
Msa0430230 AT3G16380.1 44.744 371 200 3 25 392 22 390 7.00e-99 305
Msa0430230 AT3G16380.1 33.571 280 169 4 26 290 114 391 5.23e-41 152
Msa0430230 AT3G16380.1 33.681 288 176 5 112 398 21 294 2.78e-39 148
Msa0430230 AT3G16380.1 36.269 193 101 4 23 197 201 389 8.18e-27 112
Msa0430230 AT3G16380.1 35.500 200 114 5 191 389 9 194 1.68e-25 108
Msa0430230 AT1G11650.2 28.472 288 177 9 2 265 36 318 3.35e-28 115
Msa0430230 AT1G11650.2 26.950 282 185 9 104 373 51 323 7.33e-19 88.2
Msa0430230 AT1G11650.2 30.058 173 96 5 25 178 156 322 4.42e-14 73.9
Msa0430230 AT5G54900.1 26.493 268 171 8 25 271 61 323 4.05e-27 112
Msa0430230 AT5G54900.1 25.092 271 186 8 113 374 61 323 1.85e-19 90.1
Msa0430230 AT5G54900.1 26.471 204 137 6 184 384 41 234 1.73e-15 78.2
Msa0430230 AT2G18510.1 37.500 168 102 3 25 190 26 192 4.76e-27 111
Msa0430230 AT2G18510.1 30.159 189 112 5 205 390 27 198 1.11e-15 78.6
Msa0430230 AT1G11650.1 28.205 273 167 9 2 250 36 303 6.23e-26 107
Msa0430230 AT1G11650.1 26.616 263 172 9 104 354 51 304 3.74e-17 82.0
Msa0430230 AT1G47490.1 28.526 312 183 13 25 309 102 400 5.80e-25 106
Msa0430230 AT1G47490.1 26.380 326 217 9 87 394 71 391 9.93e-25 105
Msa0430230 AT1G47490.1 26.471 238 148 9 186 407 81 307 5.32e-12 67.8
Msa0430230 AT4G27000.1 25.379 264 171 8 25 268 81 338 8.63e-25 105
Msa0430230 AT4G27000.1 25.547 274 179 9 113 374 81 341 8.38e-19 88.2
Msa0430230 AT4G27000.1 28.351 194 125 5 195 385 72 254 1.90e-16 81.3
Msa0430230 AT1G47500.1 27.885 312 185 13 25 309 104 402 9.83e-25 105
Msa0430230 AT1G47500.1 26.897 290 190 8 114 390 105 385 6.67e-23 100
Msa0430230 AT1G47500.1 25.214 234 153 7 186 407 86 309 1.08e-12 69.7
Msa0430230 AT3G14100.1 28.214 280 159 7 22 268 57 327 1.65e-24 105
Msa0430230 AT3G14100.1 28.155 309 180 11 76 363 32 319 7.11e-19 88.6
Msa0430230 AT3G14100.1 30.233 172 101 4 204 374 60 213 4.01e-15 77.4
Msa0430230 AT1G54080.1 27.500 280 161 7 22 268 61 331 2.20e-24 104
Msa0430230 AT1G54080.1 27.491 291 168 9 103 369 58 329 1.11e-17 85.1
Msa0430230 AT1G54080.1 29.834 181 108 4 204 383 64 226 1.09e-14 75.9
Msa0430230 AT1G54080.2 27.465 284 160 8 22 268 61 335 5.87e-23 100
Msa0430230 AT1G54080.2 27.891 294 167 12 103 369 58 333 2.48e-16 80.9
Msa0430230 AT1G54080.2 29.730 185 107 5 204 383 64 230 2.14e-13 72.0
Msa0430230 AT3G19130.1 27.113 284 171 8 114 372 110 382 6.99e-23 100
Msa0430230 AT3G19130.1 27.338 278 157 9 25 265 109 378 1.77e-22 99.4
Msa0430230 AT1G49600.3 26.296 270 165 7 25 265 120 384 1.11e-21 97.1
Msa0430230 AT1G49600.3 26.007 273 183 6 114 372 121 388 1.37e-20 94.0
Msa0430230 AT1G49600.2 26.296 270 165 7 25 265 120 384 1.11e-21 97.1
Msa0430230 AT1G49600.2 26.007 273 183 6 114 372 121 388 1.37e-20 94.0
Msa0430230 AT1G49600.1 26.296 270 165 7 25 265 120 384 1.38e-21 96.7
Msa0430230 AT1G49600.1 26.007 273 183 6 114 372 121 388 9.83e-21 94.4
Msa0430230 AT1G17370.2 27.076 277 163 7 22 268 52 319 1.48e-21 96.3
Msa0430230 AT1G17370.2 28.058 278 168 8 103 363 49 311 4.73e-18 85.9
Msa0430230 AT1G17370.2 27.907 172 105 4 204 374 55 208 1.44e-12 69.3
Msa0430230 AT1G17370.1 26.786 280 163 7 22 268 52 322 3.79e-21 95.1
Msa0430230 AT1G17370.1 28.114 281 167 9 103 363 49 314 5.46e-19 89.0
Msa0430230 AT1G17370.1 27.907 172 105 4 204 374 55 208 1.68e-12 69.3
Msa0430230 AT5G19350.2 25.275 273 167 8 25 266 25 291 9.07e-21 94.0
Msa0430230 AT5G19350.2 24.373 279 183 8 113 372 25 294 2.40e-16 80.9
Msa0430230 AT5G19350.2 24.537 216 124 5 18 204 114 319 1.88e-14 75.1
Msa0430230 AT5G19350.2 25.000 200 133 5 201 396 22 208 6.58e-13 70.5
Msa0430230 AT5G19350.1 24.549 277 168 8 25 266 25 295 2.74e-20 92.8
Msa0430230 AT5G19350.1 24.382 283 182 7 113 372 25 298 3.43e-16 80.5
Msa0430230 AT5G19350.1 25.000 220 122 6 18 204 114 323 5.07e-14 73.9
Msa0430230 AT5G19350.1 25.000 200 133 5 201 396 22 208 5.72e-13 70.5
Msa0430230 AT5G41690.1 20.993 443 258 11 25 378 69 508 2.41e-19 90.5
Msa0430230 AT5G41690.1 22.188 320 200 5 98 371 57 373 3.46e-13 71.6
Msa0430230 AT5G41690.3 20.993 443 258 11 25 378 69 508 2.41e-19 90.5
Msa0430230 AT5G41690.3 22.188 320 200 5 98 371 57 373 3.46e-13 71.6
Msa0430230 AT5G41690.2 20.993 443 258 11 25 378 69 508 2.41e-19 90.5
Msa0430230 AT5G41690.2 22.188 320 200 5 98 371 57 373 3.46e-13 71.6
Msa0430230 AT1G45100.1 22.680 388 252 11 22 370 62 440 1.87e-18 87.8
Msa0430230 AT3G52150.2 33.333 177 111 5 205 378 78 250 9.71e-18 82.8
Msa0430230 AT3G52150.2 30.159 189 115 6 103 278 69 253 3.85e-16 78.2
Msa0430230 AT3G52150.1 33.333 177 111 5 205 378 78 250 9.71e-18 82.8
Msa0430230 AT3G52150.1 30.159 189 115 6 103 278 69 253 3.85e-16 78.2
Msa0430230 AT2G35410.1 29.592 196 125 5 188 378 81 268 4.58e-17 82.0
Msa0430230 AT3G52380.1 27.059 170 100 3 26 175 118 283 8.77e-17 81.3
Msa0430230 AT3G52380.1 29.032 186 125 5 205 386 118 300 3.22e-14 73.6
Msa0430230 AT3G52380.1 25.556 180 115 4 114 280 118 291 1.66e-11 65.5
Msa0430230 AT2G37220.1 27.835 194 117 3 114 284 93 286 1.29e-16 80.1
Msa0430230 AT2G37220.1 25.714 210 128 3 11 193 78 286 8.19e-15 75.1
Msa0430230 AT4G00830.2 27.381 252 163 7 17 261 111 349 8.07e-16 79.7
Msa0430230 AT4G00830.2 25.795 283 181 9 111 388 115 373 4.47e-15 77.4
Msa0430230 AT4G00830.1 27.381 252 163 7 17 261 111 349 8.07e-16 79.7
Msa0430230 AT4G00830.1 25.795 283 181 9 111 388 115 373 4.47e-15 77.4
Msa0430230 AT4G00830.6 27.381 252 163 7 17 261 111 349 8.07e-16 79.7
Msa0430230 AT4G00830.6 25.795 283 181 9 111 388 115 373 4.47e-15 77.4
Msa0430230 AT5G50250.1 29.348 184 121 3 18 193 107 289 1.32e-15 77.4
Msa0430230 AT5G50250.1 30.851 188 112 6 205 387 115 289 2.39e-14 73.6
Msa0430230 AT4G00830.3 26.071 280 176 8 111 388 115 365 4.19e-15 77.4
Msa0430230 AT4G00830.3 26.800 250 159 7 17 261 111 341 6.23e-15 77.0
Msa0430230 AT4G00830.5 26.071 280 176 8 111 388 115 365 4.19e-15 77.4
Msa0430230 AT4G00830.5 26.800 250 159 7 17 261 111 341 6.23e-15 77.0
Msa0430230 AT2G16940.1 30.573 157 91 3 36 176 194 348 1.55e-14 75.9
Msa0430230 AT2G16940.2 30.573 157 91 3 36 176 243 397 1.95e-14 75.5
Msa0430230 AT4G24770.1 29.255 188 119 4 205 389 152 328 2.11e-14 74.3
Msa0430230 AT4G24770.1 27.273 187 127 3 15 193 141 326 7.20e-14 72.8
Msa0430230 AT4G24770.2 29.255 188 119 4 205 389 152 328 2.11e-14 74.3
Msa0430230 AT4G24770.2 27.273 187 127 3 15 193 141 326 7.20e-14 72.8
Msa0430230 AT3G52660.3 24.803 254 169 6 17 261 87 327 2.76e-14 74.7
Msa0430230 AT3G52660.1 24.803 254 169 6 17 261 87 327 2.76e-14 74.7
Msa0430230 AT3G52660.2 24.803 254 169 6 17 261 87 327 2.76e-14 74.7
Msa0430230 AT2G16940.5 30.573 157 91 3 36 176 53 207 3.05e-14 74.3
Msa0430230 AT2G16940.4 30.573 157 91 3 36 176 53 207 3.05e-14 74.3
Msa0430230 AT4G00830.4 25.795 283 181 9 111 388 115 373 5.73e-14 73.9
Msa0430230 AT4G00830.4 26.667 255 161 8 17 261 111 349 1.01e-13 73.2
Msa0430230 AT1G01080.1 26.042 192 127 5 106 283 102 292 9.31e-14 72.0
Msa0430230 AT1G47490.2 30.233 172 108 8 25 185 102 272 1.30e-13 71.6
Msa0430230 AT1G47490.2 27.679 224 142 8 186 400 81 293 5.42e-12 66.6
Msa0430230 AT1G47500.2 29.070 172 110 8 25 185 104 274 1.39e-13 71.6
Msa0430230 AT1G47500.2 27.426 237 144 10 186 406 84 308 1.85e-12 68.2
Msa0430230 AT2G44710.4 21.453 289 209 7 26 306 131 409 3.46e-13 72.0
Msa0430230 AT1G01080.2 25.907 193 127 5 106 283 102 293 3.94e-13 70.1
Msa0430230 AT2G44710.2 21.453 289 209 7 26 306 216 494 4.06e-13 71.6
Msa0430230 AT2G44710.1 21.453 289 209 7 26 306 216 494 4.06e-13 71.6
Msa0430230 AT4G16280.3 26.282 156 112 1 22 174 118 273 2.25e-12 68.9
Msa0430230 AT4G16280.4 26.282 156 112 1 22 174 43 198 2.29e-12 69.3
Msa0430230 AT4G16280.2 26.282 156 112 1 22 174 118 273 2.67e-12 69.3
Msa0430230 AT2G16940.3 28.916 166 91 4 36 176 223 386 2.83e-12 68.9
Msa0430230 AT4G26650.2 26.087 184 111 9 205 371 14 189 2.85e-12 68.6
Msa0430230 AT4G26650.1 26.087 184 111 9 205 371 17 192 2.90e-12 68.6
Msa0430230 AT5G40490.1 26.230 183 117 5 205 385 44 210 3.05e-12 68.6
Msa0430230 AT2G15500.1 40.206 97 21 1 259 355 29 88 3.14e-12 63.9
Msa0430230 AT3G13224.2 25.287 174 108 4 199 367 15 171 3.38e-12 67.8
Msa0430230 AT3G13224.1 25.595 168 103 4 205 367 21 171 3.90e-12 66.2
Msa0430230 AT4G10610.1 29.070 172 106 6 25 184 151 318 5.02e-12 67.0
Msa0430230 AT3G13224.3 25.595 168 103 4 205 367 12 162 5.20e-12 67.4
Msa0430230 AT1G01080.3 28.571 168 103 5 106 256 102 269 1.16e-11 65.5
Msa0430230 AT5G40490.2 25.962 208 128 7 188 385 2 193 2.00e-11 65.9
Msa0430230 AT3G46020.1 33.708 89 58 1 302 389 3 91 2.14e-11 60.8
Msa0430230 AT1G60000.1 22.778 180 132 3 18 191 79 257 2.71e-11 63.9
Msa0430230 AT2G47310.1 26.699 206 136 7 189 387 94 291 2.71e-11 65.9
Msa0430230 AT1G58470.2 27.064 218 125 9 205 403 8 210 3.50e-11 64.7
Msa0430230 AT1G58470.1 27.064 218 125 9 205 403 8 210 3.50e-11 64.7
Msa0430230 AT5G47620.1 25.568 176 115 6 205 371 8 176 6.48e-11 64.3
Msa0430230 AT5G47620.2 25.568 176 115 6 205 371 8 176 6.48e-11 64.3
Msa0430230 AT5G47620.5 25.568 176 115 6 205 371 8 176 6.48e-11 64.3
Msa0430230 AT5G55550.2 25.253 198 117 7 205 382 8 194 7.40e-11 64.3
Msa0430230 AT5G55550.3 25.253 198 117 7 205 382 8 194 7.40e-11 64.3
Msa0430230 AT5G55550.6 25.253 198 117 7 205 382 8 194 7.40e-11 64.3
Msa0430230 AT5G55550.11 25.253 198 117 7 205 382 8 194 7.40e-11 64.3
Msa0430230 AT5G55550.5 25.543 184 109 6 205 371 8 180 7.46e-11 64.3
Msa0430230 AT5G55550.4 25.543 184 109 6 205 371 8 180 7.46e-11 64.3
Msa0430230 AT5G55550.9 25.543 184 109 6 205 371 8 180 7.46e-11 64.3
Msa0430230 AT5G55550.7 25.543 184 109 6 205 371 8 180 7.46e-11 64.3
Msa0430230 AT5G55550.1 25.543 184 109 6 205 371 8 180 7.46e-11 64.3
Msa0430230 AT1G03457.3 39.759 83 46 2 111 192 224 303 8.04e-11 63.5
Msa0430230 AT4G14300.1 25.568 176 119 6 205 371 8 180 9.40e-11 63.5
Msa0430230 AT4G14300.2 25.568 176 119 6 205 371 8 180 9.40e-11 63.5
Msa0430230 AT5G03580.1 37.500 80 50 0 307 386 18 97 9.64e-11 58.9

Find 112 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGATTCTTCATTCTCAAAT+TGG 0.190670 3_2:+81904453 None:intergenic
CACCCTTTATCTAGAACTAT+TGG 0.244001 3_2:-81903156 Msa0430230:three_prime_UTR
TGTTGCTCCTGCTCAGAAAA+AGG 0.264739 3_2:-81903622 Msa0430230:CDS
AATCCAATAGTTCTAGATAA+AGG 0.281854 3_2:+81903153 None:intergenic
GTTGGCAAAGTAACTTTAGA+TGG 0.303960 3_2:+81903068 None:intergenic
GATGGTAAATCAAAATGTTT+TGG 0.314489 3_2:-81904209 Msa0430230:CDS
AGCGAACTGTTCTCCGAGTT+TGG 0.328906 3_2:-81903957 Msa0430230:CDS
TGTTCGGATCTGTAGGGATT+TGG 0.334733 3_2:-81905295 Msa0430230:CDS
TATCTCTATCCTGCTTCCTT+TGG 0.344410 3_2:+81904363 None:intergenic
AGAGAGAAAAGCAAGGTTAC+AGG 0.348997 3_2:-81903598 Msa0430230:CDS
CAATGACGTGGCGGCGGCTC+CGG 0.362430 3_2:-81905424 Msa0430230:CDS
TCTCAACAATCCCTAGGTTA+TGG 0.366487 3_2:-81905270 Msa0430230:CDS
CTATTGGATTATCATCCATT+TGG 0.395593 3_2:-81903140 Msa0430230:three_prime_UTR
GAAACATGAATTCATGCATT+GGG 0.402766 3_2:-81903505 Msa0430230:three_prime_UTR
GACGATTCATCAATAATAGA+TGG 0.409202 3_2:-81903470 Msa0430230:three_prime_UTR
CATCTGTAACCGACTCTGAT+AGG 0.413909 3_2:+81904297 None:intergenic
CAGGGAATTAGTAGGGGATC+TGG 0.415025 3_2:-81903812 Msa0430230:CDS
TATGATCAATTGCCCTGTCC+AGG 0.415385 3_2:+81904570 None:intergenic
ATCCAATAGTTCTAGATAAA+GGG 0.418542 3_2:+81903154 None:intergenic
TACTACATTGTTCGCGGAGC+GGG 0.419146 3_2:-81905577 Msa0430230:five_prime_UTR
TGCTGAGATGAATGGCAAAA+TGG 0.424613 3_2:-81903664 Msa0430230:CDS
CATGCACAATGTTGGCTGTT+CGG 0.436356 3_2:+81905665 None:intergenic
TTGTTTCTGTTCGGATCTGT+AGG 0.445634 3_2:-81905302 Msa0430230:CDS
TCGGTCAAGTTGTTTCTGTT+CGG 0.446639 3_2:-81905311 Msa0430230:CDS
GCGAAATGAAAACCCTAAAT+CGG 0.448748 3_2:+81905498 None:intergenic
GGTAAAGTCGTTAAACCAAA+TGG 0.449085 3_2:+81903125 None:intergenic
CCATTGCTATCTTGCAAGAA+AGG 0.449772 3_2:+81904510 None:intergenic
TGCTTCCTCGGGAGTTGAAA+AGG 0.450958 3_2:+81903781 None:intergenic
TTGGTGAAGATAAATTGAAA+TGG 0.453294 3_2:+81905524 None:intergenic
GAGATCCACAGGGAATTAGT+AGG 0.456137 3_2:-81903820 Msa0430230:CDS
GACGTCGTTGTCAGATGATT+CGG 0.464012 3_2:+81905399 None:intergenic
TGATGATGCAGAACCTGGAC+AGG 0.468640 3_2:-81904583 Msa0430230:intron
GAATCGGTTTGTTGTTCAGT+GGG 0.469931 3_2:+81905062 None:intergenic
ACAGATTCTGCGAGATCCAC+AGG 0.472786 3_2:-81903831 Msa0430230:intron
TACAGCACGAGTTGCTTCCT+CGG 0.478169 3_2:+81903769 None:intergenic
AAATAGAGACAATTCATGAT+AGG 0.481128 3_2:+81903235 None:intergenic
CAGAAACAACTTGACCGATC+TGG 0.481273 3_2:+81905316 None:intergenic
GCACCACTCTTCCGAACACT+AGG 0.481441 3_2:+81905016 None:intergenic
AACATCAGTGGTGGAAAAGT+TGG 0.483930 3_2:+81903050 None:intergenic
AGAAACATGAATTCATGCAT+TGG 0.488886 3_2:-81903506 Msa0430230:three_prime_UTR
CACTGAACAACAAACCGATT+CGG 0.490085 3_2:-81905060 Msa0430230:CDS
TATTAGGTGGGGTTGGCCGA+TGG 0.497919 3_2:-81903295 Msa0430230:three_prime_UTR
ATGAATGGCAAAATGGTTGC+GGG 0.498816 3_2:-81903657 Msa0430230:CDS
CGAATCGGTTTGTTGTTCAG+TGG 0.502963 3_2:+81905061 None:intergenic
CTTTCCATTGAGTGCCTCCA+CGG 0.505448 3_2:+81904148 None:intergenic
TTCCGCTACTACATTGTTCG+CGG 0.509275 3_2:-81905583 Msa0430230:five_prime_UTR
AGTGCAATTGACAAGTTAAA+CGG 0.509973 3_2:-81904425 Msa0430230:CDS
GATGCTTCTGGTCTGTCTAA+AGG 0.510690 3_2:-81904488 Msa0430230:CDS
CATGCTGCTCAACGATAAAC+CGG 0.510980 3_2:-81904402 Msa0430230:CDS
TGAGCAGGAGCAACATAAAG+AGG 0.513452 3_2:+81903630 None:intergenic
TTGGCTTCTCAACAATCCCT+AGG 0.514758 3_2:-81905276 Msa0430230:CDS
AAGATAGCAATGGATGCTTC+TGG 0.515938 3_2:-81904500 Msa0430230:CDS
AGATCCACAGGGAATTAGTA+GGG 0.516201 3_2:-81903819 Msa0430230:CDS
TGGAAATGACCAACGTAGAC+CGG 0.518569 3_2:+81904383 None:intergenic
TCGTAGCTTGCTGAGATGAA+TGG 0.525753 3_2:-81903672 Msa0430230:intron
GTTGTCAGATGATTCGGAAC+CGG 0.525867 3_2:+81905405 None:intergenic
TTCTAGATAAAGGGTGACCA+AGG 0.526642 3_2:+81903163 None:intergenic
CTCATCGCGACCCTAGTGTT+CGG 0.527657 3_2:-81905027 Msa0430230:CDS
TTTAGATGGATTAAGAAATG+TGG 0.527899 3_2:+81903082 None:intergenic
TGGTCATTTCCAAAGGAAGC+AGG 0.530354 3_2:-81904372 Msa0430230:CDS
TGTGAGCAATGACGTGGCGG+CGG 0.531503 3_2:-81905430 Msa0430230:CDS
TCTGGTCTGTCTAAAGGCTA+CGG 0.533319 3_2:-81904482 Msa0430230:CDS
AAAGCCGTGGAGGCACTCAA+TGG 0.533685 3_2:-81904152 Msa0430230:CDS
ACAGCACGAGTTGCTTCCTC+GGG 0.536352 3_2:+81903770 None:intergenic
GATGACAAGGAGTGGTATGT+TGG 0.537605 3_2:-81904119 Msa0430230:CDS
GAACAATGTAGTAGCGGAAG+TGG 0.539241 3_2:+81905587 None:intergenic
AAGACATGAGCAGAGTATGA+AGG 0.540087 3_2:-81904054 Msa0430230:CDS
GACTTTACCTGTGTTTCTAG+TGG 0.548129 3_2:-81903111 Msa0430230:three_prime_UTR
AAGATCGTAAAGCTGTGAAT+CGG 0.552323 3_2:+81905344 None:intergenic
TGTTTCTGTTCGGATCTGTA+GGG 0.553345 3_2:-81905301 Msa0430230:CDS
AATTGACATAACCATAACCT+AGG 0.557075 3_2:+81905259 None:intergenic
CAGGTAATATTGCGCAACAA+TGG 0.557100 3_2:-81903579 Msa0430230:CDS
TGAGAATACATAATCCGAAT+CGG 0.557323 3_2:+81905046 None:intergenic
GTTTAGTCGATAGTTTCCCT+TGG 0.563343 3_2:-81903180 Msa0430230:three_prime_UTR
AAACTTGTATCTCAAGAACT+TGG 0.566366 3_2:-81904006 Msa0430230:CDS
GACCCTAGTGTTCGGAAGAG+TGG 0.566788 3_2:-81905019 Msa0430230:CDS
ACAATTCATGATAGGACGAT+AGG 0.568436 3_2:+81903243 None:intergenic
CCTTTCTTGCAAGATAGCAA+TGG 0.569880 3_2:-81904510 Msa0430230:CDS
CTTTATAATTACAGCGCGTG+TGG 0.575072 3_2:-81903537 Msa0430230:CDS
GATGAATGGCAAAATGGTTG+CGG 0.576429 3_2:-81903658 Msa0430230:CDS
TGAAGTTACTGTACCAAACT+CGG 0.583558 3_2:+81903944 None:intergenic
TGGCAGCGCATGCACAATGT+TGG 0.586071 3_2:+81905657 None:intergenic
AGAAATTTGATGACAAGGAG+TGG 0.592245 3_2:-81904127 Msa0430230:CDS
AAAATTTGGGGCAACATCAG+TGG 0.593102 3_2:+81903038 None:intergenic
TCTACGTTGGTCATTTCCAA+AGG 0.593767 3_2:-81904379 Msa0430230:CDS
TGATGAATCGTCATTAACAA+AGG 0.594914 3_2:+81903481 None:intergenic
TGGTACAGTAACTTCATGCA+AGG 0.601719 3_2:-81903937 Msa0430230:intron
TTTATTAAAATCAAAGAACA+TGG 0.603140 3_2:+81903429 None:intergenic
TGGAAAGAAATTTGATGACA+AGG 0.609034 3_2:-81904132 Msa0430230:CDS
CTACTACATTGTTCGCGGAG+CGG 0.616082 3_2:-81905578 Msa0430230:five_prime_UTR
GTAGTAATGAGAGATGTAGA+TGG 0.616292 3_2:-81904227 Msa0430230:CDS
AACGATAAACCGGTCTACGT+TGG 0.616304 3_2:-81904392 Msa0430230:CDS
ATTTGGGGCAACATCAGTGG+TGG 0.617940 3_2:+81903041 None:intergenic
GATAAGACCACTAGAAACAC+AGG 0.622261 3_2:+81903104 None:intergenic
TCTAGATAAAGGGTGACCAA+GGG 0.625122 3_2:+81903164 None:intergenic
TGCTGCTGCTAAAGCCGTGG+AGG 0.626357 3_2:-81904162 Msa0430230:CDS
ACGTTTCAATCTCCGAACAA+TGG 0.626823 3_2:-81905469 Msa0430230:exon
ATTGACATAACCATAACCTA+GGG 0.628812 3_2:+81905260 None:intergenic
GTAGTAGCGGAAGTGGAGAG+AGG 0.641211 3_2:+81905594 None:intergenic
AATTTCAGTAACCCTCATGA+CGG 0.648870 3_2:-81905240 Msa0430230:intron
CTCCGCGAACAATGTAGTAG+CGG 0.655189 3_2:+81905581 None:intergenic
AATCGGTTTGTTGTTCAGTG+GGG 0.658473 3_2:+81905063 None:intergenic
CGAGAATGTGAGCAATGACG+TGG 0.659369 3_2:-81905436 Msa0430230:CDS
CACCACTCTTCCGAACACTA+GGG 0.663524 3_2:+81905017 None:intergenic
GATCCACAGGGAATTAGTAG+GGG 0.663558 3_2:-81903818 Msa0430230:CDS
CAGATTCTGCGAGATCCACA+GGG 0.664919 3_2:-81903830 Msa0430230:CDS
AAAAGGAAGAGAGAAAAGCA+AGG 0.668923 3_2:-81903605 Msa0430230:CDS
AGATGCTGCTGCTAAAGCCG+TGG 0.680131 3_2:-81904165 Msa0430230:CDS
GATGATGCAGAACCTGGACA+GGG 0.684090 3_2:-81904582 Msa0430230:intron
GAATGTGAGCAATGACGTGG+CGG 0.685042 3_2:-81905433 Msa0430230:CDS
ACAACGACGTCGTTGTACGT+CGG 0.715761 3_2:-81905387 Msa0430230:CDS
GATCCCCTACTAATTCCCTG+TGG 0.725738 3_2:+81903815 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGGTATATTTAATCTTTT+TGG + chr3_2:81903050-81903069 None:intergenic 15.0%
!!! TTTTTTTTTTCACAAATTTC+AGG - chr3_2:81903951-81903970 Msa0430230:CDS 15.0%
!!! TTTTTTTTTCACAAATTTCA+GGG - chr3_2:81903952-81903971 Msa0430230:CDS 15.0%
!! ATGTTTAATAATTCTGTTAT+TGG - chr3_2:81904061-81904080 Msa0430230:CDS 15.0%
!! TTTATTAAAATCAAAGAACA+TGG + chr3_2:81905255-81905274 None:intergenic 15.0%
!!! AATCATGTAATTTTTTTGTT+TGG + chr3_2:81905298-81905317 None:intergenic 15.0%
!!! AAAATTACATGATTTTCATT+TGG - chr3_2:81905304-81905323 Msa0430230:CDS 15.0%
!!! ACCTAATATAAAAAACTTTT+GGG + chr3_2:81905374-81905393 None:intergenic 15.0%
!!! AAAAGTTTTTTATATTAGGT+GGG - chr3_2:81905374-81905393 Msa0430230:CDS 15.0%
!!! AAACTCTAAATCATTTTTAA+TGG - chr3_2:81905479-81905498 Msa0430230:five_prime_UTR 15.0%
!!! AAAGCATTAAACAAAAATTT+GGG + chr3_2:81905659-81905678 None:intergenic 15.0%
!! GAGTAAAAACAATGAAAAAA+AGG + chr3_2:81903068-81903087 None:intergenic 20.0%
!!! GATAAATTGAAATGGTTTTT+AGG + chr3_2:81903152-81903171 None:intergenic 20.0%
!!! TGTTAACTTGTATCTAATTT+AGG - chr3_2:81903822-81903841 Msa0430230:CDS 20.0%
!!! TTTTTTTTCACAAATTTCAG+GGG - chr3_2:81903953-81903972 Msa0430230:CDS 20.0%
!! TTGATCATATTCAAATCTAT+TGG - chr3_2:81904983-81905002 Msa0430230:intron 20.0%
!!! ACCCAAAAGTTTTTTATATT+AGG - chr3_2:81905370-81905389 Msa0430230:CDS 20.0%
!!! CACCTAATATAAAAAACTTT+TGG + chr3_2:81905375-81905394 None:intergenic 20.0%
!!! CAAAAGTTTTTTATATTAGG+TGG - chr3_2:81905373-81905392 Msa0430230:CDS 20.0%
!!! AAAGTTTTTTATATTAGGTG+GGG - chr3_2:81905375-81905394 Msa0430230:CDS 20.0%
!!! ATTTGAAAATTTTGATCCAT+CGG + chr3_2:81905405-81905424 None:intergenic 20.0%
!! AAGCATTAAACAAAAATTTG+GGG + chr3_2:81905658-81905677 None:intergenic 20.0%
!!! GAAAGCATTAAACAAAAATT+TGG + chr3_2:81905660-81905679 None:intergenic 20.0%
!! GGTATATTTAATCTTTTTGG+TGG + chr3_2:81903047-81903066 None:intergenic 25.0%
! TTGGTGAAGATAAATTGAAA+TGG + chr3_2:81903160-81903179 None:intergenic 25.0%
! TGCATTAAAATTTCACGAAA+CGG + chr3_2:81903486-81903505 None:intergenic 25.0%
!!! TTTCGTGAAATTTTAATGCA+TGG - chr3_2:81903486-81903505 Msa0430230:three_prime_UTR 25.0%
!!! TGAAATTTTAATGCATGGTT+AGG - chr3_2:81903491-81903510 Msa0430230:three_prime_UTR 25.0%
!!! GAAATTTTAATGCATGGTTA+GGG - chr3_2:81903492-81903511 Msa0430230:three_prime_UTR 25.0%
! ATTAGATACAAGTTAACAGA+AGG + chr3_2:81903820-81903839 None:intergenic 25.0%
! AATTTAGGAAAATTAGTTCC+TGG - chr3_2:81903837-81903856 Msa0430230:intron 25.0%
! GAAAAAAAAAACCAAGAACT+CGG + chr3_2:81903942-81903961 None:intergenic 25.0%
!! TATGATACCTTTTCGATTTT+TGG - chr3_2:81904142-81904161 Msa0430230:CDS 25.0%
! GATATTTCCAAAAATCGAAA+AGG + chr3_2:81904152-81904171 None:intergenic 25.0%
!!! AAGAACATTTTTGGAGAATA+TGG - chr3_2:81904415-81904434 Msa0430230:CDS 25.0%
!! GATGGTAAATCAAAATGTTT+TGG - chr3_2:81904472-81904491 Msa0430230:CDS 25.0%
! AAGCCCTAAAAAAATATGAA+AGG - chr3_2:81904587-81904606 Msa0430230:intron 25.0%
! AGCCCTAAAAAAATATGAAA+GGG - chr3_2:81904588-81904607 Msa0430230:intron 25.0%
!!! CTCCCTTTCATATTTTTTTA+GGG + chr3_2:81904593-81904612 None:intergenic 25.0%
! CAGCAATTACTAAATAAAGT+TGG + chr3_2:81904953-81904972 None:intergenic 25.0%
!!! TATAAAAAACTTTTGGGTTG+TGG + chr3_2:81905368-81905387 None:intergenic 25.0%
! AAATAGAGACAATTCATGAT+AGG + chr3_2:81905449-81905468 None:intergenic 25.0%
!!! ATCCAATAGTTCTAGATAAA+GGG + chr3_2:81905530-81905549 None:intergenic 25.0%
!!! AATCCAATAGTTCTAGATAA+AGG + chr3_2:81905531-81905550 None:intergenic 25.0%
!!! TTTAGATGGATTAAGAAATG+TGG + chr3_2:81905602-81905621 None:intergenic 25.0%
ATTGACATAACCATAACCTA+GGG + chr3_2:81903424-81903443 None:intergenic 30.0%
AATTGACATAACCATAACCT+AGG + chr3_2:81903425-81903444 None:intergenic 30.0%
AAAAAAACTAACCGTCATGA+GGG + chr3_2:81903455-81903474 None:intergenic 30.0%
AAAAAAAACTAACCGTCATG+AGG + chr3_2:81903456-81903475 None:intergenic 30.0%
TGAGAATACATAATCCGAAT+CGG + chr3_2:81903638-81903657 None:intergenic 30.0%
! TGCTGCTAATATTTTCATCA+AGG - chr3_2:81903685-81903704 Msa0430230:intron 30.0%
TTTCCTATTCGTAAATGTCA+AGG + chr3_2:81903761-81903780 None:intergenic 30.0%
TTGAATTATGTCGAGTAACT+TGG - chr3_2:81903793-81903812 Msa0430230:CDS 30.0%
GTTAGTAAGTGATATAATCC+AGG + chr3_2:81903858-81903877 None:intergenic 30.0%
ATTCAACTCCTGAAATTGTA+GGG + chr3_2:81903993-81904012 None:intergenic 30.0%
TACAATTTCAGGAGTTGAAT+GGG - chr3_2:81903993-81904012 Msa0430230:CDS 30.0%
CAGATTCTTCATTCTCAAAT+TGG + chr3_2:81904231-81904250 None:intergenic 30.0%
AGTGCAATTGACAAGTTAAA+CGG - chr3_2:81904256-81904275 Msa0430230:CDS 30.0%
! TGGAAAGAAATTTGATGACA+AGG - chr3_2:81904549-81904568 Msa0430230:CDS 30.0%
!!! GCTCCCTTTCATATTTTTTT+AGG + chr3_2:81904594-81904613 None:intergenic 30.0%
! GAAACTGTTGACAAGTTTTA+TGG - chr3_2:81904649-81904668 Msa0430230:intron 30.0%
AAACTTGTATCTCAAGAACT+TGG - chr3_2:81904675-81904694 Msa0430230:intron 30.0%
ATTGCAGATATGAACAGAAA+GGG + chr3_2:81904786-81904805 None:intergenic 30.0%
AATTGCAGATATGAACAGAA+AGG + chr3_2:81904787-81904806 None:intergenic 30.0%
AGAAACATGAATTCATGCAT+TGG - chr3_2:81905175-81905194 Msa0430230:intron 30.0%
GAAACATGAATTCATGCATT+GGG - chr3_2:81905176-81905195 Msa0430230:intron 30.0%
TGATGAATCGTCATTAACAA+AGG + chr3_2:81905203-81905222 None:intergenic 30.0%
GACGATTCATCAATAATAGA+TGG - chr3_2:81905211-81905230 Msa0430230:intron 30.0%
!!! TTTTTTATATTAGGTGGGGT+TGG - chr3_2:81905379-81905398 Msa0430230:CDS 30.0%
CTATTGGATTATCATCCATT+TGG - chr3_2:81905541-81905560 Msa0430230:five_prime_UTR 30.0%
! TCTTCACCAAAAACCGATTT+AGG - chr3_2:81903170-81903189 Msa0430230:three_prime_UTR 35.0%
! CTTCACCAAAAACCGATTTA+GGG - chr3_2:81903171-81903190 Msa0430230:three_prime_UTR 35.0%
!! GAAAACCCTAAATCGGTTTT+TGG + chr3_2:81903179-81903198 None:intergenic 35.0%
GCGAAATGAAAACCCTAAAT+CGG + chr3_2:81903186-81903205 None:intergenic 35.0%
AAGATCGTAAAGCTGTGAAT+CGG + chr3_2:81903340-81903359 None:intergenic 35.0%
! TACGATCTTTTCAACCAGAT+CGG - chr3_2:81903351-81903370 Msa0430230:three_prime_UTR 35.0%
AATTTCAGTAACCCTCATGA+CGG - chr3_2:81903441-81903460 Msa0430230:three_prime_UTR 35.0%
TTTAATGCATGGTTAGGGTT+AGG - chr3_2:81903497-81903516 Msa0430230:three_prime_UTR 35.0%
TCTATCAACAAGAGCAAATG+CGG + chr3_2:81903528-81903547 None:intergenic 35.0%
CATCCTTGACATTTACGAAT+AGG - chr3_2:81903755-81903774 Msa0430230:intron 35.0%
! GGTACTTTTGTTCACTTGTA+AGG + chr3_2:81903921-81903940 None:intergenic 35.0%
TTCAACTCCTGAAATTGTAG+GGG + chr3_2:81903992-81904011 None:intergenic 35.0%
CATTCAACTCCTGAAATTGT+AGG + chr3_2:81903994-81904013 None:intergenic 35.0%
CTACAATTTCAGGAGTTGAA+TGG - chr3_2:81903992-81904011 Msa0430230:CDS 35.0%
!! TTTTATGATGATGCAGAACC+TGG - chr3_2:81904093-81904112 Msa0430230:CDS 35.0%
TGTGAAAAACCTATCAGAGT+CGG - chr3_2:81904375-81904394 Msa0430230:CDS 35.0%
! GACGACTTGAAGAACATTTT+TGG - chr3_2:81904406-81904425 Msa0430230:CDS 35.0%
GTAGTAATGAGAGATGTAGA+TGG - chr3_2:81904454-81904473 Msa0430230:CDS 35.0%
! AGAAATTTGATGACAAGGAG+TGG - chr3_2:81904554-81904573 Msa0430230:CDS 35.0%
TGAAGTTACTGTACCAAACT+CGG + chr3_2:81904740-81904759 None:intergenic 35.0%
TTGCAGATATGAACAGAAAG+GGG + chr3_2:81904785-81904804 None:intergenic 35.0%
AAAAGGAAGAGAGAAAAGCA+AGG - chr3_2:81905076-81905095 Msa0430230:CDS 35.0%
ACAATTCATGATAGGACGAT+AGG + chr3_2:81905441-81905460 None:intergenic 35.0%
! CACCCTTTATCTAGAACTAT+TGG - chr3_2:81905525-81905544 Msa0430230:five_prime_UTR 35.0%
GGTAAAGTCGTTAAACCAAA+TGG + chr3_2:81905559-81905578 None:intergenic 35.0%
GTTGGCAAAGTAACTTTAGA+TGG + chr3_2:81905616-81905635 None:intergenic 35.0%
ACGTTTCAATCTCCGAACAA+TGG - chr3_2:81903212-81903231 Msa0430230:three_prime_UTR 40.0%
!! TCGGTCAAGTTGTTTCTGTT+CGG - chr3_2:81903370-81903389 Msa0430230:three_prime_UTR 40.0%
!! TTGTTTCTGTTCGGATCTGT+AGG - chr3_2:81903379-81903398 Msa0430230:three_prime_UTR 40.0%
! TGTTTCTGTTCGGATCTGTA+GGG - chr3_2:81903380-81903399 Msa0430230:three_prime_UTR 40.0%
TCTCAACAATCCCTAGGTTA+TGG - chr3_2:81903411-81903430 Msa0430230:three_prime_UTR 40.0%
! TGACTGTTTTACAGCTGCAA+AGG - chr3_2:81903574-81903593 Msa0430230:CDS 40.0%
!! AATCGGTTTGTTGTTCAGTG+GGG + chr3_2:81903621-81903640 None:intergenic 40.0%
!! GAATCGGTTTGTTGTTCAGT+GGG + chr3_2:81903622-81903641 None:intergenic 40.0%
CACTGAACAACAAACCGATT+CGG - chr3_2:81903621-81903640 Msa0430230:CDS 40.0%
!! TTTCGCCCTCTGAAATTGTA+GGG - chr3_2:81903721-81903740 Msa0430230:intron 40.0%
CCTAACCCTACAATTTCAGA+GGG + chr3_2:81903729-81903748 None:intergenic 40.0%
!! GAACAAAAGTACCGAGTTCT+TGG - chr3_2:81903928-81903947 Msa0430230:intron 40.0%
TTTCTGACCCCTACAATTTC+AGG - chr3_2:81903982-81904001 Msa0430230:CDS 40.0%
CCATTGCTATCTTGCAAGAA+AGG + chr3_2:81904174-81904193 None:intergenic 40.0%
CCTTTCTTGCAAGATAGCAA+TGG - chr3_2:81904171-81904190 Msa0430230:CDS 40.0%
AAGATAGCAATGGATGCTTC+TGG - chr3_2:81904181-81904200 Msa0430230:CDS 40.0%
TCTACGTTGGTCATTTCCAA+AGG - chr3_2:81904302-81904321 Msa0430230:CDS 40.0%
TATCTCTATCCTGCTTCCTT+TGG + chr3_2:81904321-81904340 None:intergenic 40.0%
AAGACATGAGCAGAGTATGA+AGG - chr3_2:81904627-81904646 Msa0430230:intron 40.0%
TGGTACAGTAACTTCATGCA+AGG - chr3_2:81904744-81904763 Msa0430230:intron 40.0%
TCATGCAAGGTGTGTGAATA+CGG - chr3_2:81904757-81904776 Msa0430230:intron 40.0%
AGATCCACAGGGAATTAGTA+GGG - chr3_2:81904862-81904881 Msa0430230:intron 40.0%
TGCTGAGATGAATGGCAAAA+TGG - chr3_2:81905017-81905036 Msa0430230:CDS 40.0%
GATGAATGGCAAAATGGTTG+CGG - chr3_2:81905023-81905042 Msa0430230:CDS 40.0%
ATGAATGGCAAAATGGTTGC+GGG - chr3_2:81905024-81905043 Msa0430230:CDS 40.0%
AGAGAGAAAAGCAAGGTTAC+AGG - chr3_2:81905083-81905102 Msa0430230:CDS 40.0%
CAGGTAATATTGCGCAACAA+TGG - chr3_2:81905102-81905121 Msa0430230:intron 40.0%
CTTTATAATTACAGCGCGTG+TGG - chr3_2:81905144-81905163 Msa0430230:intron 40.0%
GTTTAGTCGATAGTTTCCCT+TGG - chr3_2:81905501-81905520 Msa0430230:five_prime_UTR 40.0%
TCTAGATAAAGGGTGACCAA+GGG + chr3_2:81905520-81905539 None:intergenic 40.0%
TTCTAGATAAAGGGTGACCA+AGG + chr3_2:81905521-81905540 None:intergenic 40.0%
!! GACTTTACCTGTGTTTCTAG+TGG - chr3_2:81905570-81905589 Msa0430230:five_prime_UTR 40.0%
GATAAGACCACTAGAAACAC+AGG + chr3_2:81905580-81905599 None:intergenic 40.0%
! AACATCAGTGGTGGAAAAGT+TGG + chr3_2:81905634-81905653 None:intergenic 40.0%
! AAAATTTGGGGCAACATCAG+TGG + chr3_2:81905646-81905665 None:intergenic 40.0%
! CATGCACAATGTTGGCTGTT+CGG + chr3_2:81903019-81903038 None:intergenic 45.0%
! GAACAATGTAGTAGCGGAAG+TGG + chr3_2:81903097-81903116 None:intergenic 45.0%
TTCCGCTACTACATTGTTCG+CGG - chr3_2:81903098-81903117 Msa0430230:three_prime_UTR 45.0%
! CGTGATTTTGCGCCATTGTT+CGG + chr3_2:81903227-81903246 None:intergenic 45.0%
! GTTGTCAGATGATTCGGAAC+CGG + chr3_2:81903279-81903298 None:intergenic 45.0%
GACGTCGTTGTCAGATGATT+CGG + chr3_2:81903285-81903304 None:intergenic 45.0%
CAGAAACAACTTGACCGATC+TGG + chr3_2:81903368-81903387 None:intergenic 45.0%
TGTTCGGATCTGTAGGGATT+TGG - chr3_2:81903386-81903405 Msa0430230:three_prime_UTR 45.0%
TTGGCTTCTCAACAATCCCT+AGG - chr3_2:81903405-81903424 Msa0430230:three_prime_UTR 45.0%
! TTTTACAGCTGCAAAGGCGA+TGG - chr3_2:81903580-81903599 Msa0430230:CDS 45.0%
!! CGAATCGGTTTGTTGTTCAG+TGG + chr3_2:81903623-81903642 None:intergenic 45.0%
!! GTTTCGCCCTCTGAAATTGT+AGG - chr3_2:81903720-81903739 Msa0430230:intron 45.0%
!! CCCTCTGAAATTGTAGGGTT+AGG - chr3_2:81903726-81903745 Msa0430230:intron 45.0%
GCCTAACCCTACAATTTCAG+AGG + chr3_2:81903730-81903749 None:intergenic 45.0%
TATGATCAATTGCCCTGTCC+AGG + chr3_2:81904114-81904133 None:intergenic 45.0%
GATGCTTCTGGTCTGTCTAA+AGG - chr3_2:81904193-81904212 Msa0430230:CDS 45.0%
TCTGGTCTGTCTAAAGGCTA+CGG - chr3_2:81904199-81904218 Msa0430230:CDS 45.0%
CATGCTGCTCAACGATAAAC+CGG - chr3_2:81904279-81904298 Msa0430230:CDS 45.0%
AACGATAAACCGGTCTACGT+TGG - chr3_2:81904289-81904308 Msa0430230:CDS 45.0%
TGGAAATGACCAACGTAGAC+CGG + chr3_2:81904301-81904320 None:intergenic 45.0%
TGGTCATTTCCAAAGGAAGC+AGG - chr3_2:81904309-81904328 Msa0430230:CDS 45.0%
! CATCTGTAACCGACTCTGAT+AGG + chr3_2:81904387-81904406 None:intergenic 45.0%
GATGACAAGGAGTGGTATGT+TGG - chr3_2:81904562-81904581 Msa0430230:CDS 45.0%
GAGATCCACAGGGAATTAGT+AGG - chr3_2:81904861-81904880 Msa0430230:intron 45.0%
GATCCACAGGGAATTAGTAG+GGG - chr3_2:81904863-81904882 Msa0430230:intron 45.0%
!! TCGTAGCTTGCTGAGATGAA+TGG - chr3_2:81905009-81905028 Msa0430230:CDS 45.0%
TGAGCAGGAGCAACATAAAG+AGG + chr3_2:81905054-81905073 None:intergenic 45.0%
TGTTGCTCCTGCTCAGAAAA+AGG - chr3_2:81905059-81905078 Msa0430230:CDS 45.0%
! CTCTCTTCCTTTTTCTGAGC+AGG + chr3_2:81905069-81905088 None:intergenic 45.0%
CTCCGCGAACAATGTAGTAG+CGG + chr3_2:81903103-81903122 None:intergenic 50.0%
CTACTACATTGTTCGCGGAG+CGG - chr3_2:81903103-81903122 Msa0430230:three_prime_UTR 50.0%
TACTACATTGTTCGCGGAGC+GGG - chr3_2:81903104-81903123 Msa0430230:three_prime_UTR 50.0%
CGAGAATGTGAGCAATGACG+TGG - chr3_2:81903245-81903264 Msa0430230:three_prime_UTR 50.0%
GAATGTGAGCAATGACGTGG+CGG - chr3_2:81903248-81903267 Msa0430230:three_prime_UTR 50.0%
ACAACGACGTCGTTGTACGT+CGG - chr3_2:81903294-81903313 Msa0430230:three_prime_UTR 50.0%
CACCACTCTTCCGAACACTA+GGG + chr3_2:81903667-81903686 None:intergenic 50.0%
! TGATGATGCAGAACCTGGAC+AGG - chr3_2:81904098-81904117 Msa0430230:CDS 50.0%
GATGATGCAGAACCTGGACA+GGG - chr3_2:81904099-81904118 Msa0430230:CDS 50.0%
CTTTCCATTGAGTGCCTCCA+CGG + chr3_2:81904536-81904555 None:intergenic 50.0%
AGCGAACTGTTCTCCGAGTT+TGG - chr3_2:81904724-81904743 Msa0430230:intron 50.0%
TGTGGATCTCGCAGAATCTG+TGG + chr3_2:81904851-81904870 None:intergenic 50.0%
ACAGATTCTGCGAGATCCAC+AGG - chr3_2:81904850-81904869 Msa0430230:intron 50.0%
CAGATTCTGCGAGATCCACA+GGG - chr3_2:81904851-81904870 Msa0430230:intron 50.0%
GATCCCCTACTAATTCCCTG+TGG + chr3_2:81904869-81904888 None:intergenic 50.0%
CAGGGAATTAGTAGGGGATC+TGG - chr3_2:81904869-81904888 Msa0430230:intron 50.0%
! TGTTGCCTTTTCAACTCCCG+AGG - chr3_2:81904895-81904914 Msa0430230:intron 50.0%
TGCTTCCTCGGGAGTTGAAA+AGG + chr3_2:81904903-81904922 None:intergenic 50.0%
TACAGCACGAGTTGCTTCCT+CGG + chr3_2:81904915-81904934 None:intergenic 50.0%
! ATTTGGGGCAACATCAGTGG+TGG + chr3_2:81905643-81905662 None:intergenic 50.0%
TGGCAGCGCATGCACAATGT+TGG + chr3_2:81903027-81903046 None:intergenic 55.0%
! GTAGTAGCGGAAGTGGAGAG+AGG + chr3_2:81903090-81903109 None:intergenic 55.0%
CTCATCGCGACCCTAGTGTT+CGG - chr3_2:81903654-81903673 Msa0430230:CDS 55.0%
GACCCTAGTGTTCGGAAGAG+TGG - chr3_2:81903662-81903681 Msa0430230:CDS 55.0%
GCACCACTCTTCCGAACACT+AGG + chr3_2:81903668-81903687 None:intergenic 55.0%
AGATGCTGCTGCTAAAGCCG+TGG - chr3_2:81904516-81904535 Msa0430230:CDS 55.0%
!! AAAGCCGTGGAGGCACTCAA+TGG - chr3_2:81904529-81904548 Msa0430230:CDS 55.0%
ACAGCACGAGTTGCTTCCTC+GGG + chr3_2:81904914-81904933 None:intergenic 55.0%
!! TATTAGGTGGGGTTGGCCGA+TGG - chr3_2:81905386-81905405 Msa0430230:CDS 55.0%
TGTGAGCAATGACGTGGCGG+CGG - chr3_2:81903251-81903270 Msa0430230:three_prime_UTR 60.0%
TGCTGCTGCTAAAGCCGTGG+AGG - chr3_2:81904519-81904538 Msa0430230:CDS 60.0%
CAATGACGTGGCGGCGGCTC+CGG - chr3_2:81903257-81903276 Msa0430230:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 81903016 81905687 81903016 ID=Msa0430230;Name=Msa0430230
chr3_2 mRNA 81903016 81905687 81903016 ID=Msa0430230-mRNA-1;Parent=Msa0430230;Name=Msa0430230-mRNA-1;_AED=0.02;_eAED=0.02;_QI=215|1|1|1|1|1|5|511|415
chr3_2 exon 81903016 81903688 81903016 ID=Msa0430230-mRNA-1:exon:22729;Parent=Msa0430230-mRNA-1
chr3_2 exon 81903772 81903849 81903772 ID=Msa0430230-mRNA-1:exon:22728;Parent=Msa0430230-mRNA-1
chr3_2 exon 81903938 81904594 81903938 ID=Msa0430230-mRNA-1:exon:22727;Parent=Msa0430230-mRNA-1
chr3_2 exon 81904997 81905115 81904997 ID=Msa0430230-mRNA-1:exon:22726;Parent=Msa0430230-mRNA-1
chr3_2 exon 81905241 81905687 81905241 ID=Msa0430230-mRNA-1:exon:22725;Parent=Msa0430230-mRNA-1
chr3_2 five_prime_UTR 81905473 81905687 81905473 ID=Msa0430230-mRNA-1:five_prime_utr;Parent=Msa0430230-mRNA-1
chr3_2 CDS 81905241 81905472 81905241 ID=Msa0430230-mRNA-1:cds;Parent=Msa0430230-mRNA-1
chr3_2 CDS 81904997 81905115 81904997 ID=Msa0430230-mRNA-1:cds;Parent=Msa0430230-mRNA-1
chr3_2 CDS 81903938 81904594 81903938 ID=Msa0430230-mRNA-1:cds;Parent=Msa0430230-mRNA-1
chr3_2 CDS 81903772 81903849 81903772 ID=Msa0430230-mRNA-1:cds;Parent=Msa0430230-mRNA-1
chr3_2 CDS 81903527 81903688 81903527 ID=Msa0430230-mRNA-1:cds;Parent=Msa0430230-mRNA-1
chr3_2 three_prime_UTR 81903016 81903526 81903016 ID=Msa0430230-mRNA-1:three_prime_utr;Parent=Msa0430230-mRNA-1
Gene Sequence

>Msa0430230

ATGGCGCAAAATCACGAGAATGTGAGCAATGACGTGGCGGCGGCTCCGGTTCCGAATCATCTGACAACGACGTCGTTGTACGTCGGAGATCTCGATCACGACGTCACCGATTCACAGCTTTACGATCTTTTCAACCAGATCGGTCAAGTTGTTTCTGTTCGGATCTGTAGGGATTTGGCTTCTCAACAATCCCTAGGTTATGGTTATGTCAATTTCAGTAACCCTCATGACGCTGCAAAGGCGATGGATGTGTTGAATTTCACCCCACTGAACAACAAACCGATTCGGATTATGTATTCTCATCGCGACCCTAGTGTTCGGAAGAGTGGTGCTGCTAATATTTTCATCAAGAACCTGGACAGGGCAATTGATCATAAAGCTTTATATGATACCTTTTCGATTTTTGGAAATATCCTTTCTTGCAAGATAGCAATGGATGCTTCTGGTCTGTCTAAAGGCTACGGTTTTGTCCAATTTGAGAATGAAGAATCTGCACAAAGTGCAATTGACAAGTTAAACGGCATGCTGCTCAACGATAAACCGGTCTACGTTGGTCATTTCCAAAGGAAGCAGGATAGAGATAATGCTTTGAGCAATGCGAAGTTTAATAATGTCTATGTGAAAAACCTATCAGAGTCGGTTACAGATGACGACTTGAAGAACATTTTTGGAGAATATGGAACTATTACTAGTGCTGTAGTAATGAGAGATGTAGATGGTAAATCAAAATGTTTTGGTTTTGTCAATTTTGAAAATGCAGATGCTGCTGCTAAAGCCGTGGAGGCACTCAATGGAAAGAAATTTGATGACAAGGAGTGGTATGTTGGAAAAGCCCTAAAAAAATATGAAAGGGAGCTTGAGCTGAAAGAAAGACATGAGCAGAGTATGAAGGAAACTGTTGACAAGTTTTATGGTGCAAACTTGTATCTCAAGAACTTGGATGATAGTGTCACTGATGAAAAACTTAGCGAACTGTTCTCCGAGTTTGGTACAGTAACTTCATGCAAGATTCTGCGAGATCCACAGGGAATTAGTAGGGGATCTGGATTTGTTGCCTTTTCAACTCCCGAGGAAGCAACTCGTGCTCTTGCTGAGATGAATGGCAAAATGGTTGCGGGCAAACCTCTTTATGTTGCTCCTGCTCAGAAAAAGGAAGAGAGAAAAGCAAGGTTACAGGTAATATTGCGCAACAATGGATCAACAGTTAATTCTATGCTTTATAATTACAGCGCGTGTGGTAATAATTAG

Protein sequence

>Msa0430230

MAQNHENVSNDVAAAPVPNHLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNIFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAKAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQKKEERKARLQVILRNNGSTVNSMLYNYSACGNN*