AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1079730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079730 MtrunA17_Chr7g0264961 100.000 250 0 0 1 250 1 250 6.31e-175 481
Msa1079730 MtrunA17_Chr4g0030861 74.603 252 62 2 1 250 1 252 4.39e-121 345
Msa1079730 MtrunA17_Chr1g0212671 67.460 252 80 2 1 250 1 252 1.19e-114 328
Msa1079730 MtrunA17_Chr7g0222791 69.841 252 74 2 1 250 1 252 7.89e-110 317
Msa1079730 MtrunA17_Chr2g0331261 61.224 245 94 1 4 247 3 247 1.22e-95 280
Msa1079730 MtrunA17_Chr8g0340161 61.847 249 93 2 3 250 1 248 1.89e-94 277
Msa1079730 MtrunA17_Chr1g0188771 54.264 258 110 2 1 250 1 258 2.95e-94 277
Msa1079730 MtrunA17_Chr6g0478191 57.647 255 103 2 1 250 1 255 1.55e-91 270
Msa1079730 MtrunA17_Chr5g0399341 62.602 246 91 1 5 250 3 247 2.20e-90 267
Msa1079730 MtrunA17_Chr1g0146161 53.226 248 111 3 3 249 1 244 6.99e-83 248
Msa1079730 MtrunA17_Chr1g0146171 52.869 244 110 3 3 245 1 240 3.57e-79 238
Msa1079730 MtrunA17_Chr4g0020781 42.079 202 114 3 46 245 4 204 9.81e-43 144
Msa1079730 MtrunA17_Chr2g0326621 36.653 251 141 6 12 245 31 280 9.65e-40 139
Msa1079730 MtrunA17_Chr1g0199731 36.515 241 136 5 12 236 30 269 1.41e-36 130
Msa1079730 MtrunA17_Chr4g0006001 35.965 228 131 5 21 236 56 280 7.87e-36 129
Msa1079730 MtrunA17_Chr7g0264111 36.087 230 130 5 21 234 39 267 7.18e-35 126
Msa1079730 MtrunA17_Chr4g0029071 34.800 250 146 6 12 245 30 278 1.00e-34 125
Msa1079730 MtrunA17_Chr3g0145671 36.986 219 119 6 21 225 37 250 7.45e-34 123
Msa1079730 MtrunA17_Chr3g0113211 34.310 239 141 5 11 236 45 280 7.51e-33 120
Msa1079730 MtrunA17_Chr5g0397391 34.016 244 137 6 10 236 41 277 8.70e-33 120
Msa1079730 MtrunA17_Chr8g0386961 33.333 243 138 6 11 236 42 277 1.17e-32 120
Msa1079730 MtrunA17_Chr5g0426131 33.735 249 149 4 4 248 23 259 3.76e-32 118
Msa1079730 MtrunA17_Chr5g0436701 34.286 245 140 7 11 240 45 283 3.02e-31 116
Msa1079730 MtrunA17_Chr2g0284611 34.468 235 145 5 16 248 33 260 1.13e-27 107
Msa1079730 MtrunA17_Chr2g0284591 34.016 244 150 5 1 240 13 249 2.11e-27 106
Msa1079730 MtrunA17_Chr3g0079421 36.638 232 122 9 25 249 30 243 1.10e-25 101
Msa1079730 MtrunA17_Chr8g0379901 35.616 219 131 6 20 236 38 248 1.95e-25 101
Msa1079730 MtrunA17_Chr5g0435051 33.937 221 131 5 20 236 39 248 6.67e-25 99.8
Msa1079730 MtrunA17_Chr2g0284631 33.621 232 140 6 20 249 90 309 8.77e-25 100
Msa1079730 MtrunA17_Chr4g0001221 36.893 206 113 5 25 225 79 272 2.40e-23 96.3
Msa1079730 MtrunA17_Chr8g0379911 32.365 241 143 7 4 236 19 247 5.11e-23 94.4
Msa1079730 MtrunA17_Chr2g0333771 35.922 206 115 6 25 225 84 277 5.30e-23 95.1
Msa1079730 MtrunA17_Chr7g0217331 32.751 229 147 3 21 249 37 258 1.66e-22 93.2
Msa1079730 MtrunA17_Chr2g0284581 32.889 225 141 6 20 243 37 252 8.55e-22 91.3
Msa1079730 MtrunA17_Chr1g0184541 30.837 227 148 5 24 249 65 283 1.33e-21 91.3
Msa1079730 MtrunA17_Chr1g0201331 33.913 230 140 7 19 246 73 292 5.13e-21 89.7
Msa1079730 MtrunA17_Chr4g0044201 30.493 223 126 5 20 236 34 233 3.35e-20 86.7
Msa1079730 MtrunA17_Chr2g0284601 34.171 199 123 5 46 243 13 204 3.75e-19 83.2
Msa1079730 MtrunA17_Chr4g0038591 28.235 255 149 9 12 243 42 285 1.12e-16 78.2
Msa1079730 MtrunA17_Chr6g0467461 36.364 110 50 3 129 237 3 93 1.37e-13 65.5
Msa1079730 MtrunA17_Chr4g0038611 29.703 202 115 7 69 249 33 228 3.92e-13 67.4
Msa1079730 MtrunA17_Chr8g0362451 34.314 102 48 2 143 244 6 88 9.66e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079730 AT2G36830.1 79.681 251 50 1 1 250 1 251 1.23e-141 397
Msa1079730 AT3G26520.1 75.099 253 60 3 1 250 1 253 3.24e-130 369
Msa1079730 AT4G01470.1 71.825 252 69 2 1 250 1 252 2.85e-121 346
Msa1079730 AT5G47450.1 62.195 246 91 2 5 249 3 247 2.82e-95 280
Msa1079730 AT3G16240.1 57.600 250 104 2 3 250 1 250 1.04e-89 266
Msa1079730 AT1G73190.1 56.107 262 100 3 4 250 7 268 5.80e-87 259
Msa1079730 AT1G17810.1 55.939 261 101 3 4 250 7 267 1.16e-86 258
Msa1079730 AT4G17340.1 60.976 246 94 2 5 249 3 247 1.01e-84 253
Msa1079730 AT2G25810.1 50.403 248 116 4 3 249 1 242 7.78e-72 220
Msa1079730 AT3G47440.1 45.662 219 115 4 18 234 20 236 2.57e-49 163
Msa1079730 AT2G37170.1 36.255 251 141 7 12 245 28 276 2.37e-38 135
Msa1079730 AT2G37170.2 36.255 251 141 7 12 245 71 319 3.43e-38 136
Msa1079730 AT2G37180.1 36.255 251 141 7 12 245 28 276 4.00e-38 135
Msa1079730 AT3G53420.1 37.344 241 134 6 21 245 39 278 2.09e-37 133
Msa1079730 AT3G53420.2 37.344 241 134 6 21 245 39 278 2.09e-37 133
Msa1079730 AT2G39010.1 34.940 249 142 6 2 234 22 266 2.88e-37 132
Msa1079730 AT3G54820.1 36.522 230 129 5 21 234 38 266 5.31e-37 132
Msa1079730 AT5G60660.1 35.270 241 139 6 12 236 30 269 1.59e-34 125
Msa1079730 AT2G16850.1 37.327 217 121 5 21 225 36 249 1.61e-34 125
Msa1079730 AT4G35100.1 35.865 237 137 5 21 245 38 271 3.46e-34 124
Msa1079730 AT4G35100.2 35.865 237 137 5 21 245 38 271 3.46e-34 124
Msa1079730 AT4G00430.1 34.454 238 141 5 11 236 43 277 2.06e-33 122
Msa1079730 AT3G61430.2 36.638 232 131 6 21 240 52 279 2.41e-33 122
Msa1079730 AT3G61430.1 36.638 232 131 6 21 240 52 279 2.41e-33 122
Msa1079730 AT2G45960.1 36.207 232 132 6 21 240 52 279 5.11e-33 121
Msa1079730 AT4G23400.1 35.776 232 126 7 21 236 53 277 5.22e-33 121
Msa1079730 AT1G01620.1 34.649 228 134 5 21 236 52 276 2.01e-32 120
Msa1079730 AT1G01620.2 37.234 188 103 5 63 236 18 204 3.38e-28 107
Msa1079730 AT1G80760.1 34.667 225 128 6 25 243 84 295 1.68e-25 102
Msa1079730 AT2G45960.3 33.790 219 120 6 21 217 52 267 2.54e-24 99.0
Msa1079730 AT2G45960.2 34.783 207 120 5 21 215 52 255 3.12e-24 98.2
Msa1079730 AT5G37820.1 34.081 223 137 5 24 245 46 259 1.51e-22 94.0
Msa1079730 AT4G10380.1 34.764 233 141 5 17 246 72 296 2.63e-22 93.6
Msa1079730 AT5G37820.2 34.081 223 137 5 24 245 82 295 2.94e-22 94.0
Msa1079730 AT2G39010.2 34.857 175 101 4 2 167 22 192 4.56e-22 91.3
Msa1079730 AT4G19030.1 31.858 226 124 6 20 230 54 264 7.56e-22 92.4
Msa1079730 AT4G18910.1 31.034 232 131 6 20 236 51 268 1.10e-21 91.7
Msa1079730 AT5G37810.1 33.036 224 141 5 24 245 46 262 1.76e-21 90.9
Msa1079730 AT1G52180.1 48.352 91 47 0 125 215 34 124 6.31e-21 85.5
Msa1079730 AT3G06100.1 28.452 239 165 3 2 240 27 259 7.78e-21 89.0
Msa1079730 AT3G06100.2 30.332 211 141 3 24 234 1 205 4.26e-20 86.3
Msa1079730 AT1G31885.1 34.272 213 121 5 24 226 46 249 6.41e-20 87.4
Msa1079730 AT1G31885.2 37.179 156 88 3 78 225 41 194 3.48e-17 79.0
Msa1079730 AT4G00430.2 33.951 162 99 3 11 167 43 201 6.08e-17 77.4
Msa1079730 AT2G34390.1 30.222 225 141 6 20 236 47 263 2.72e-14 71.2
Msa1079730 AT2G34390.2 30.317 221 138 6 24 236 9 221 5.09e-14 70.1
Msa1079730 AT3G06100.3 32.308 130 87 1 105 234 44 172 1.65e-13 67.8
Msa1079730 AT4G19030.3 29.891 184 100 5 20 188 54 223 1.22e-11 62.8

Find 135 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCATAATAGCTCCAAAAT+TGG 0.195429 7_2:+78923202 None:intergenic
ATTCCAATGTTACCCTTCTT+TGG 0.212168 7_2:+78922343 None:intergenic
ATGTTGATTCCTCCCAATTT+TGG 0.212841 7_2:-78923215 Msa1079730:five_prime_UTR
CATTGTTGGTGCTAACATTT+TGG 0.214654 7_2:-78922296 Msa1079730:CDS
CTGAATCAATGTTATAATTT+CGG 0.220298 7_2:-78921847 Msa1079730:three_prime_UTR
AGAAAAGAAACAATGTTATT+TGG 0.222570 7_2:+78923256 None:intergenic
ATGCTTGTGTCTTACTTATA+TGG 0.225708 7_2:+78923109 None:intergenic
GTTACTGTGAAAGCGCTTTC+TGG 0.244535 7_2:+78923074 None:intergenic
TGAATCAATGTTATAATTTC+GGG 0.256983 7_2:-78921846 Msa1079730:three_prime_UTR
GTCTTCGCCGGTTCAGGTTC+CGG 0.279072 7_2:-78922910 Msa1079730:CDS
GGTCCAACCACTGGGTCTAC+TGG 0.291738 7_2:-78922201 Msa1079730:CDS
TACTGGGCTGGCCCACTTAT+CGG 0.311103 7_2:-78922184 Msa1079730:CDS
ATCTTTGTCTTCGCCGGTTC+AGG 0.322662 7_2:-78922916 Msa1079730:CDS
CTTATCGGTGGTGGAATTGC+TGG 0.323157 7_2:-78922169 Msa1079730:CDS
TTCCAATGTTACCCTTCTTT+GGG 0.343393 7_2:+78922344 None:intergenic
ATTATTGCACCAATTGCTAT+TGG 0.349026 7_2:-78922322 Msa1079730:CDS
TTGGAGATTGTGATGACCTT+TGG 0.349069 7_2:-78922400 Msa1079730:CDS
TTGGTTGGTGGAGCCTTTAC+CGG 0.366838 7_2:-78922277 Msa1079730:CDS
GCTGGAGCTGGTCCAACCAC+TGG 0.370487 7_2:-78922210 Msa1079730:CDS
ATTGCTATTGGTTTCATTGT+TGG 0.373919 7_2:-78922310 Msa1079730:CDS
CCCAACTACTGACTACTAGA+TGG 0.375801 7_2:-78922101 Msa1079730:exon
CTCAGCCAAACCAGCTTTCA+AGG 0.378565 7_2:+78922954 None:intergenic
AAATGGTGGCCGTTGATCTT+TGG 0.379333 7_2:-78921957 Msa1079730:three_prime_UTR
AAACCAGCTTTCAAGGTGTC+TGG 0.380207 7_2:+78922961 None:intergenic
AGTTGGAGTTGGACCAGCTT+TGG 0.387058 7_2:-78922425 Msa1079730:CDS
CTGCTGTTGTGAGCTGGAGC+TGG 0.387382 7_2:-78922222 Msa1079730:CDS
AGACACCTTGAAAGCTGGTT+TGG 0.388141 7_2:-78922959 Msa1079730:CDS
TCGGGCCTGCTGTTGTGAGC+TGG 0.388266 7_2:-78922228 Msa1079730:CDS
TTCATAATAGCTCCAAAATT+GGG 0.392916 7_2:+78923203 None:intergenic
GAATGACACTGCTGGGTTCA+TGG 0.394289 7_2:+78922249 None:intergenic
CCCATCTAGTAGTCAGTAGT+TGG 0.396152 7_2:+78922100 None:intergenic
TGCGATACCGGAACCTGAAC+CGG 0.401710 7_2:+78922903 None:intergenic
TTGCAGTCTGTTCCAGCATT+CGG 0.404116 7_2:-78922460 Msa1079730:intron
GTCAACCCCGCTGTCACCTT+CGG 0.406903 7_2:-78922760 Msa1079730:CDS
TAATATTGAAATATTTCAAC+CGG 0.407307 7_2:-78923172 Msa1079730:five_prime_UTR
CCTCGTCTTTGTTACCGCTT+CGG 0.409303 7_2:-78922650 Msa1079730:intron
CAGTAGTTGGGAGCTGCTCA+TGG 0.412257 7_2:+78922113 None:intergenic
TGAACCCAGCAGTGTCATTC+GGG 0.413725 7_2:-78922246 Msa1079730:CDS
AACCACTGGGTCTACTGGGC+TGG 0.414067 7_2:-78922196 Msa1079730:CDS
CTCTTTGTTGCTGTCTCCGT+TGG 0.414749 7_2:-78922805 Msa1079730:CDS
ATGAACCCAGCAGTGTCATT+CGG 0.415899 7_2:-78922247 Msa1079730:CDS
TTGTACATGCTTGGCCTAGC+AGG 0.416679 7_2:-78921892 Msa1079730:three_prime_UTR
ACCTTCATCTTTGTCTTCGC+CGG 0.420629 7_2:-78922922 Msa1079730:CDS
TTTGGTTCACCGGTTGTAAC+GGG 0.422320 7_2:+78923146 None:intergenic
AACCGGTAACCCGTTACAAC+CGG 0.439821 7_2:-78923155 Msa1079730:five_prime_UTR
GTCCAACCACTGGGTCTACT+GGG 0.451536 7_2:-78922200 Msa1079730:CDS
AATTGCTGGGCTTGTCTATG+AGG 0.457537 7_2:-78922155 Msa1079730:CDS
TGCTGGGTTCATGGATGCTC+CGG 0.461853 7_2:+78922258 None:intergenic
CTGGAGCTGGTCCAACCACT+GGG 0.462301 7_2:-78922209 Msa1079730:CDS
GACGGTGCTGCCACCCCTGC+CGG 0.462881 7_2:-78922862 Msa1079730:CDS
CACCCAGACACCTTGAAAGC+TGG 0.464496 7_2:-78922964 Msa1079730:CDS
ACCTTCGGTGCCTTCGTTGG+TGG 0.466591 7_2:-78922745 Msa1079730:CDS
CCCTCTGATAGTCCGAATGC+TGG 0.468725 7_2:+78922448 None:intergenic
AAGCTTGTTGTATGCGATAC+CGG 0.471031 7_2:+78922891 None:intergenic
GTCACCTTCGGTGCCTTCGT+TGG 0.471790 7_2:-78922748 Msa1079730:CDS
GAGGCAGAGATGAGACCGGC+AGG 0.478206 7_2:+78922847 None:intergenic
TCCGTTGGTGCTAACATCTC+CGG 0.479679 7_2:-78922790 Msa1079730:CDS
ACAATGAAACCAATAGCAAT+TGG 0.481653 7_2:+78922313 None:intergenic
TACATCATCGCTCAACTCCT+CGG 0.483632 7_2:-78922694 Msa1079730:CDS
GTTACCCTTCTTTGGGTCAA+CGG 0.486754 7_2:+78922351 None:intergenic
GTTATAATTTCGGGTCTGCT+TGG 0.490312 7_2:-78921837 Msa1079730:three_prime_UTR
CTAGCAGGTTCTTAGTCAGC+AGG 0.496036 7_2:-78921877 Msa1079730:three_prime_UTR
GGCAGAGATGAGACCGGCAG+GGG 0.496508 7_2:+78922849 None:intergenic
GTTCATGGATGCTCCGGTAA+AGG 0.500331 7_2:+78922264 None:intergenic
AGAGATGAGACCGGCAGGGG+TGG 0.506184 7_2:+78922852 None:intergenic
CCATCTAGTAGTCAGTAGTT+GGG 0.508206 7_2:+78922101 None:intergenic
CAGCTCCAGCTCACAACAGC+AGG 0.509110 7_2:+78922223 None:intergenic
CAACAAAGAGAGCGAATGCA+TGG 0.509622 7_2:+78922818 None:intergenic
GCAGGCCCGAATGACACTGC+TGG 0.511306 7_2:+78922241 None:intergenic
ACAATCTCCAACACCAAAGC+TGG 0.516165 7_2:+78922412 None:intergenic
GCAATTCCACCACCGATAAG+TGG 0.516249 7_2:+78922172 None:intergenic
TTATCGGTGGTGGAATTGCT+GGG 0.516651 7_2:-78922168 Msa1079730:CDS
GATTGTGATGACCTTTGGAT+TGG 0.517625 7_2:-78922395 Msa1079730:CDS
AGCGAATGCATGGGCGATGG+AGG 0.527289 7_2:+78922828 None:intergenic
AAGGCACCGAAGGTGACAGC+GGG 0.529721 7_2:+78922754 None:intergenic
GCTGGCCCACTTATCGGTGG+TGG 0.532535 7_2:-78922178 Msa1079730:CDS
TCTGGGTGAGTTGCCTCTTG+AGG 0.532672 7_2:+78922979 None:intergenic
AACCAGCTTTCAAGGTGTCT+GGG 0.534447 7_2:+78922962 None:intergenic
AGTAGTTGGGAGCTGCTCAT+GGG 0.538709 7_2:+78922114 None:intergenic
TACAGCCGTTGACCCAAAGA+AGG 0.539491 7_2:-78922356 Msa1079730:CDS
CTATCAGAGGGAGTTGGAGT+TGG 0.543695 7_2:-78922436 Msa1079730:CDS
AGTTGGACCAGCTTTGGTGT+TGG 0.548732 7_2:-78922419 Msa1079730:CDS
GTTACAACCGGTGAACCAAA+AGG 0.550412 7_2:-78923143 Msa1079730:five_prime_UTR
AAATTATAACATTGATTCAG+TGG 0.559617 7_2:+78921850 None:intergenic
ACCGGAGATGTTAGCACCAA+CGG 0.561542 7_2:+78922789 None:intergenic
GAGAGCGAATGCATGGGCGA+TGG 0.568019 7_2:+78922825 None:intergenic
TTCGGACTATCAGAGGGAGT+TGG 0.568192 7_2:-78922442 Msa1079730:CDS
GTTGATCTTTGGTTGTACGT+TGG 0.568559 7_2:-78921946 Msa1079730:three_prime_UTR
GATGGAGGCAGAGATGAGAC+CGG 0.570486 7_2:+78922843 None:intergenic
TGTAAACGATACCACGGAGG+AGG 0.570553 7_2:+78922713 None:intergenic
CAGGCCCGAATGACACTGCT+GGG 0.571592 7_2:+78922242 None:intergenic
AGCCCAGTAGACCCAGTGGT+TGG 0.571603 7_2:+78922198 None:intergenic
CCAACTACTGACTACTAGAT+GGG 0.574858 7_2:-78922100 Msa1079730:exon
GAGGAGGGCGGAAGCAACGA+TGG 0.575546 7_2:+78922669 None:intergenic
AGCGGGGTTGACATGTCCAC+CGG 0.585176 7_2:+78922771 None:intergenic
TTACTTATATGGAGAACGAC+CGG 0.590638 7_2:+78923120 None:intergenic
TCCAGCATTCGGACTATCAG+AGG 0.598958 7_2:-78922449 Msa1079730:CDS
CGCTGTAGGAACTCCTCAAG+AGG 0.599395 7_2:-78922992 Msa1079730:CDS
AGGGGTGGCAGCACCGTCGT+TGG 0.600822 7_2:+78922867 None:intergenic
GACCCAAAGAAGGGTAACAT+TGG 0.607785 7_2:-78922346 Msa1079730:CDS
TATAAGTAAGACACAAGCAT+AGG 0.608314 7_2:-78923106 Msa1079730:five_prime_UTR
CAATTCCACCACCGATAAGT+GGG 0.611426 7_2:+78922173 None:intergenic
CTGCTGACTAAGAACCTGCT+AGG 0.612472 7_2:+78921878 None:intergenic
ACCGGCGAAGACAAAGATGA+AGG 0.614054 7_2:+78922921 None:intergenic
ACCACCAACGAAGGCACCGA+AGG 0.616088 7_2:+78922744 None:intergenic
CCGATCAGAAACATCGCTGT+AGG 0.617393 7_2:-78923006 Msa1079730:CDS
AACAAAGAGAGCGAATGCAT+GGG 0.618823 7_2:+78922819 None:intergenic
GGTTAGTGATCATGATGGAA+TGG 0.621224 7_2:-78921925 Msa1079730:three_prime_UTR
AGGCAGAGATGAGACCGGCA+GGG 0.622500 7_2:+78922848 None:intergenic
TTATAACATTGATTCAGTGG+TGG 0.622918 7_2:+78921853 None:intergenic
AGCGGTAACAAAGACGAGGA+GGG 0.625271 7_2:+78922654 None:intergenic
CGGAAGCAACGATGGATCCG+AGG 0.625561 7_2:+78922677 None:intergenic
AACGTACAACCAAAGATCAA+CGG 0.631888 7_2:+78921948 None:intergenic
ATAATAGCTCCAAAATTGGG+AGG 0.634095 7_2:+78923206 None:intergenic
ACAGCCGTTGACCCAAAGAA+GGG 0.637474 7_2:-78922355 Msa1079730:CDS
CCTACAGCGATGTTTCTGAT+CGG 0.643317 7_2:+78923006 None:intergenic
CACTGTGTACACCAATCCAA+AGG 0.645737 7_2:+78922384 None:intergenic
TGGGCTGGCCCACTTATCGG+TGG 0.647241 7_2:-78922181 Msa1079730:CDS
CCAGCATTCGGACTATCAGA+GGG 0.651221 7_2:-78922448 Msa1079730:CDS
AAGCGGTAACAAAGACGAGG+AGG 0.654245 7_2:+78922653 None:intergenic
GAAGGCACCGAAGGTGACAG+CGG 0.658097 7_2:+78922753 None:intergenic
GTAAACGATACCACGGAGGA+GGG 0.659135 7_2:+78922714 None:intergenic
CAACCGGTGAACCAAAAGGC+CGG 0.660337 7_2:-78923139 Msa1079730:five_prime_UTR
GTTGGTGCTAACATCTCCGG+TGG 0.661142 7_2:-78922787 Msa1079730:CDS
ACGTTGGTTAGTGATCATGA+TGG 0.661589 7_2:-78921930 Msa1079730:three_prime_UTR
GGCCAGCCCAGTAGACCCAG+TGG 0.666619 7_2:+78922194 None:intergenic
TACAACAAGCTTACCAACGA+CGG 0.666995 7_2:-78922880 Msa1079730:CDS
GGTAACAAAGACGAGGAGGG+CGG 0.672640 7_2:+78922657 None:intergenic
GGTAACATCACCCTCCTCCG+TGG 0.681289 7_2:-78922724 Msa1079730:CDS
CCGAAGCGGTAACAAAGACG+AGG 0.684473 7_2:+78922650 None:intergenic
GGTGATGTTACCACCAACGA+AGG 0.686744 7_2:+78922735 None:intergenic
CGAGAAGTATCTTACCGAAG+CGG 0.689056 7_2:+78922636 None:intergenic
CGATGATGTAAACGATACCA+CGG 0.702096 7_2:+78922707 None:intergenic
AGGCACCGAAGGTGACAGCG+GGG 0.759550 7_2:+78922755 None:intergenic
TGATGTAAACGATACCACGG+AGG 0.802444 7_2:+78922710 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTGAAATATTTCAAC+CGG - chr7_2:78921816-78921835 Msa1079730:three_prime_UTR 15.0%
!!! TTTATCTTTTTTCTTTTGAA+GGG + chr7_2:78923210-78923229 None:intergenic 15.0%
!!! TTTTATCTTTTTTCTTTTGA+AGG + chr7_2:78923211-78923230 None:intergenic 15.0%
!! TAATATTGAAATATTTCAAC+CGG - chr7_2:78921816-78921835 Msa1079730:three_prime_UTR 15.0%
!!! TTTATCTTTTTTCTTTTGAA+GGG + chr7_2:78923210-78923229 None:intergenic 15.0%
!!! TTTTATCTTTTTTCTTTTGA+AGG + chr7_2:78923211-78923230 None:intergenic 15.0%
!! AGAAAAGAAACAATGTTATT+TGG + chr7_2:78921735-78921754 None:intergenic 20.0%
!!! AAATAACATTGTTTCTTTTC+TGG - chr7_2:78921734-78921753 Msa1079730:three_prime_UTR 20.0%
!!! TGTCCTTTTTTAATTATTGA+GGG - chr7_2:78922989-78923008 Msa1079730:CDS 20.0%
!!! TAAATTATTTTGTACATGCT+TGG - chr7_2:78923087-78923106 Msa1079730:five_prime_UTR 20.0%
!!! AAATTATAACATTGATTCAG+TGG + chr7_2:78923141-78923160 None:intergenic 20.0%
!! CTGAATCAATGTTATAATTT+CGG - chr7_2:78923141-78923160 Msa1079730:five_prime_UTR 20.0%
!! TGAATCAATGTTATAATTTC+GGG - chr7_2:78923142-78923161 Msa1079730:five_prime_UTR 20.0%
!! AGAAAAGAAACAATGTTATT+TGG + chr7_2:78921735-78921754 None:intergenic 20.0%
!!! AAATAACATTGTTTCTTTTC+TGG - chr7_2:78921734-78921753 Msa1079730:three_prime_UTR 20.0%
!!! TGTCCTTTTTTAATTATTGA+GGG - chr7_2:78922989-78923008 Msa1079730:CDS 20.0%
!!! TAAATTATTTTGTACATGCT+TGG - chr7_2:78923087-78923106 Msa1079730:five_prime_UTR 20.0%
!!! AAATTATAACATTGATTCAG+TGG + chr7_2:78923141-78923160 None:intergenic 20.0%
!! CTGAATCAATGTTATAATTT+CGG - chr7_2:78923141-78923160 Msa1079730:five_prime_UTR 20.0%
!! TGAATCAATGTTATAATTTC+GGG - chr7_2:78923142-78923161 Msa1079730:five_prime_UTR 20.0%
! TTCATAATAGCTCCAAAATT+GGG + chr7_2:78921788-78921807 None:intergenic 25.0%
! TTTCATAATAGCTCCAAAAT+TGG + chr7_2:78921789-78921808 None:intergenic 25.0%
! ATTAAAAAAGGACACAACAA+AGG + chr7_2:78922983-78923002 None:intergenic 25.0%
!!! GTGTCCTTTTTTAATTATTG+AGG - chr7_2:78922988-78923007 Msa1079730:CDS 25.0%
! CAACCCTCAATAATTAAAAA+AGG + chr7_2:78922995-78923014 None:intergenic 25.0%
!! GTTTCTTTTGTGTTGAAAAA+TGG - chr7_2:78923014-78923033 Msa1079730:exon 25.0%
!! AAGAAACAATGTTATTTGGT+GGG + chr7_2:78921731-78921750 None:intergenic 25.0%
!! AAAGAAACAATGTTATTTGG+TGG + chr7_2:78921732-78921751 None:intergenic 25.0%
! TTCATAATAGCTCCAAAATT+GGG + chr7_2:78921788-78921807 None:intergenic 25.0%
! TTTCATAATAGCTCCAAAAT+TGG + chr7_2:78921789-78921808 None:intergenic 25.0%
! ATTAAAAAAGGACACAACAA+AGG + chr7_2:78922983-78923002 None:intergenic 25.0%
!!! GTGTCCTTTTTTAATTATTG+AGG - chr7_2:78922988-78923007 Msa1079730:CDS 25.0%
! CAACCCTCAATAATTAAAAA+AGG + chr7_2:78922995-78923014 None:intergenic 25.0%
!! GTTTCTTTTGTGTTGAAAAA+TGG - chr7_2:78923014-78923033 Msa1079730:exon 25.0%
ATGCTTGTGTCTTACTTATA+TGG + chr7_2:78921882-78921901 None:intergenic 30.0%
TATAAGTAAGACACAAGCAT+AGG - chr7_2:78921882-78921901 Msa1079730:three_prime_UTR 30.0%
AATTAAACTCTTGCACGTTA+GGG + chr7_2:78922444-78922463 None:intergenic 30.0%
AAATTAAACTCTTGCACGTT+AGG + chr7_2:78922445-78922464 None:intergenic 30.0%
ATTATTGCACCAATTGCTAT+TGG - chr7_2:78922666-78922685 Msa1079730:CDS 30.0%
ACAATGAAACCAATAGCAAT+TGG + chr7_2:78922678-78922697 None:intergenic 30.0%
!! ATTGCTATTGGTTTCATTGT+TGG - chr7_2:78922678-78922697 Msa1079730:CDS 30.0%
! TCTTTTGTGTTGAAAAATGG+TGG - chr7_2:78923017-78923036 Msa1079730:exon 30.0%
!! TTATAACATTGATTCAGTGG+TGG + chr7_2:78923138-78923157 None:intergenic 30.0%
ATGCTTGTGTCTTACTTATA+TGG + chr7_2:78921882-78921901 None:intergenic 30.0%
TATAAGTAAGACACAAGCAT+AGG - chr7_2:78921882-78921901 Msa1079730:three_prime_UTR 30.0%
AATTAAACTCTTGCACGTTA+GGG + chr7_2:78922444-78922463 None:intergenic 30.0%
AAATTAAACTCTTGCACGTT+AGG + chr7_2:78922445-78922464 None:intergenic 30.0%
ATTATTGCACCAATTGCTAT+TGG - chr7_2:78922666-78922685 Msa1079730:CDS 30.0%
ACAATGAAACCAATAGCAAT+TGG + chr7_2:78922678-78922697 None:intergenic 30.0%
!! ATTGCTATTGGTTTCATTGT+TGG - chr7_2:78922678-78922697 Msa1079730:CDS 30.0%
! TCTTTTGTGTTGAAAAATGG+TGG - chr7_2:78923017-78923036 Msa1079730:exon 30.0%
!! TTATAACATTGATTCAGTGG+TGG + chr7_2:78923138-78923157 None:intergenic 30.0%
!!! ACATTGTTTCTTTTCTGGCT+TGG - chr7_2:78921739-78921758 Msa1079730:three_prime_UTR 35.0%
!!! ATGTTGATTCCTCCCAATTT+TGG - chr7_2:78921773-78921792 Msa1079730:three_prime_UTR 35.0%
ATAATAGCTCCAAAATTGGG+AGG + chr7_2:78921785-78921804 None:intergenic 35.0%
TTACTTATATGGAGAACGAC+CGG + chr7_2:78921871-78921890 None:intergenic 35.0%
TTCCAATGTTACCCTTCTTT+GGG + chr7_2:78922647-78922666 None:intergenic 35.0%
ATTCCAATGTTACCCTTCTT+TGG + chr7_2:78922648-78922667 None:intergenic 35.0%
!!! CATTGTTGGTGCTAACATTT+TGG - chr7_2:78922692-78922711 Msa1079730:CDS 35.0%
AACGTACAACCAAAGATCAA+CGG + chr7_2:78923043-78923062 None:intergenic 35.0%
!!! ACATTGTTTCTTTTCTGGCT+TGG - chr7_2:78921739-78921758 Msa1079730:three_prime_UTR 35.0%
!!! ATGTTGATTCCTCCCAATTT+TGG - chr7_2:78921773-78921792 Msa1079730:three_prime_UTR 35.0%
ATAATAGCTCCAAAATTGGG+AGG + chr7_2:78921785-78921804 None:intergenic 35.0%
TTACTTATATGGAGAACGAC+CGG + chr7_2:78921871-78921890 None:intergenic 35.0%
TTCCAATGTTACCCTTCTTT+GGG + chr7_2:78922647-78922666 None:intergenic 35.0%
ATTCCAATGTTACCCTTCTT+TGG + chr7_2:78922648-78922667 None:intergenic 35.0%
!!! CATTGTTGGTGCTAACATTT+TGG - chr7_2:78922692-78922711 Msa1079730:CDS 35.0%
AACGTACAACCAAAGATCAA+CGG + chr7_2:78923043-78923062 None:intergenic 35.0%
!!! TTTTGGTTCACCGGTTGTAA+CGG + chr7_2:78921846-78921865 None:intergenic 40.0%
!! AAGCTTGTTGTATGCGATAC+CGG + chr7_2:78922100-78922119 None:intergenic 40.0%
TACAACAAGCTTACCAACGA+CGG - chr7_2:78922108-78922127 Msa1079730:CDS 40.0%
AACAAAGAGAGCGAATGCAT+GGG + chr7_2:78922172-78922191 None:intergenic 40.0%
CGATGATGTAAACGATACCA+CGG + chr7_2:78922284-78922303 None:intergenic 40.0%
TTGGAGATTGTGATGACCTT+TGG - chr7_2:78922588-78922607 Msa1079730:intron 40.0%
GATTGTGATGACCTTTGGAT+TGG - chr7_2:78922593-78922612 Msa1079730:intron 40.0%
!!! GTTGGTGCTAACATTTTGGT+TGG - chr7_2:78922696-78922715 Msa1079730:CDS 40.0%
CCATCTAGTAGTCAGTAGTT+GGG + chr7_2:78922890-78922909 None:intergenic 40.0%
! CCAACTACTGACTACTAGAT+GGG - chr7_2:78922888-78922907 Msa1079730:CDS 40.0%
GTTGATCTTTGGTTGTACGT+TGG - chr7_2:78923042-78923061 Msa1079730:five_prime_UTR 40.0%
! ACGTTGGTTAGTGATCATGA+TGG - chr7_2:78923058-78923077 Msa1079730:five_prime_UTR 40.0%
! GGTTAGTGATCATGATGGAA+TGG - chr7_2:78923063-78923082 Msa1079730:five_prime_UTR 40.0%
! GTTATAATTTCGGGTCTGCT+TGG - chr7_2:78923151-78923170 Msa1079730:five_prime_UTR 40.0%
!!! TTTTGGTTCACCGGTTGTAA+CGG + chr7_2:78921846-78921865 None:intergenic 40.0%
!! AAGCTTGTTGTATGCGATAC+CGG + chr7_2:78922100-78922119 None:intergenic 40.0%
TACAACAAGCTTACCAACGA+CGG - chr7_2:78922108-78922127 Msa1079730:CDS 40.0%
AACAAAGAGAGCGAATGCAT+GGG + chr7_2:78922172-78922191 None:intergenic 40.0%
CGATGATGTAAACGATACCA+CGG + chr7_2:78922284-78922303 None:intergenic 40.0%
TTGGAGATTGTGATGACCTT+TGG - chr7_2:78922588-78922607 Msa1079730:intron 40.0%
GATTGTGATGACCTTTGGAT+TGG - chr7_2:78922593-78922612 Msa1079730:intron 40.0%
!!! GTTGGTGCTAACATTTTGGT+TGG - chr7_2:78922696-78922715 Msa1079730:CDS 40.0%
CCATCTAGTAGTCAGTAGTT+GGG + chr7_2:78922890-78922909 None:intergenic 40.0%
! CCAACTACTGACTACTAGAT+GGG - chr7_2:78922888-78922907 Msa1079730:CDS 40.0%
GTTGATCTTTGGTTGTACGT+TGG - chr7_2:78923042-78923061 Msa1079730:five_prime_UTR 40.0%
! ACGTTGGTTAGTGATCATGA+TGG - chr7_2:78923058-78923077 Msa1079730:five_prime_UTR 40.0%
! GGTTAGTGATCATGATGGAA+TGG - chr7_2:78923063-78923082 Msa1079730:five_prime_UTR 40.0%
! GTTATAATTTCGGGTCTGCT+TGG - chr7_2:78923151-78923170 Msa1079730:five_prime_UTR 40.0%
! TTTGGTTCACCGGTTGTAAC+GGG + chr7_2:78921845-78921864 None:intergenic 45.0%
GTTACAACCGGTGAACCAAA+AGG - chr7_2:78921845-78921864 Msa1079730:three_prime_UTR 45.0%
!! GTTACTGTGAAAGCGCTTTC+TGG + chr7_2:78921917-78921936 None:intergenic 45.0%
! CCTACAGCGATGTTTCTGAT+CGG + chr7_2:78921985-78922004 None:intergenic 45.0%
! AACCAGCTTTCAAGGTGTCT+GGG + chr7_2:78922029-78922048 None:intergenic 45.0%
! AAACCAGCTTTCAAGGTGTC+TGG + chr7_2:78922030-78922049 None:intergenic 45.0%
AGACACCTTGAAAGCTGGTT+TGG - chr7_2:78922029-78922048 Msa1079730:three_prime_UTR 45.0%
ACCTTCATCTTTGTCTTCGC+CGG - chr7_2:78922066-78922085 Msa1079730:three_prime_UTR 45.0%
CAACAAAGAGAGCGAATGCA+TGG + chr7_2:78922173-78922192 None:intergenic 45.0%
TGATGTAAACGATACCACGG+AGG + chr7_2:78922281-78922300 None:intergenic 45.0%
TACATCATCGCTCAACTCCT+CGG - chr7_2:78922294-78922313 Msa1079730:CDS 45.0%
!! CGAGAAGTATCTTACCGAAG+CGG + chr7_2:78922355-78922374 None:intergenic 45.0%
CGCTTCGGTAAGATACTTCT+CGG - chr7_2:78922353-78922372 Msa1079730:CDS 45.0%
TTGCAGTCTGTTCCAGCATT+CGG - chr7_2:78922528-78922547 Msa1079730:intron 45.0%
ACAATCTCCAACACCAAAGC+TGG + chr7_2:78922579-78922598 None:intergenic 45.0%
CACTGTGTACACCAATCCAA+AGG + chr7_2:78922607-78922626 None:intergenic 45.0%
GTTACCCTTCTTTGGGTCAA+CGG + chr7_2:78922640-78922659 None:intergenic 45.0%
GACCCAAAGAAGGGTAACAT+TGG - chr7_2:78922642-78922661 Msa1079730:intron 45.0%
!!! GGTGCTAACATTTTGGTTGG+TGG - chr7_2:78922699-78922718 Msa1079730:CDS 45.0%
! ATGAACCCAGCAGTGTCATT+CGG - chr7_2:78922741-78922760 Msa1079730:CDS 45.0%
CAATTCCACCACCGATAAGT+GGG + chr7_2:78922818-78922837 None:intergenic 45.0%
!! TTATCGGTGGTGGAATTGCT+GGG - chr7_2:78922820-78922839 Msa1079730:CDS 45.0%
AATTGCTGGGCTTGTCTATG+AGG - chr7_2:78922833-78922852 Msa1079730:CDS 45.0%
! CCCAACTACTGACTACTAGA+TGG - chr7_2:78922887-78922906 Msa1079730:CDS 45.0%
CCCATCTAGTAGTCAGTAGT+TGG + chr7_2:78922891-78922910 None:intergenic 45.0%
AAATGGTGGCCGTTGATCTT+TGG - chr7_2:78923031-78923050 Msa1079730:exon 45.0%
! TTTGGTTCACCGGTTGTAAC+GGG + chr7_2:78921845-78921864 None:intergenic 45.0%
GTTACAACCGGTGAACCAAA+AGG - chr7_2:78921845-78921864 Msa1079730:three_prime_UTR 45.0%
!! GTTACTGTGAAAGCGCTTTC+TGG + chr7_2:78921917-78921936 None:intergenic 45.0%
! CCTACAGCGATGTTTCTGAT+CGG + chr7_2:78921985-78922004 None:intergenic 45.0%
! AACCAGCTTTCAAGGTGTCT+GGG + chr7_2:78922029-78922048 None:intergenic 45.0%
! AAACCAGCTTTCAAGGTGTC+TGG + chr7_2:78922030-78922049 None:intergenic 45.0%
AGACACCTTGAAAGCTGGTT+TGG - chr7_2:78922029-78922048 Msa1079730:three_prime_UTR 45.0%
ACCTTCATCTTTGTCTTCGC+CGG - chr7_2:78922066-78922085 Msa1079730:three_prime_UTR 45.0%
CAACAAAGAGAGCGAATGCA+TGG + chr7_2:78922173-78922192 None:intergenic 45.0%
TGATGTAAACGATACCACGG+AGG + chr7_2:78922281-78922300 None:intergenic 45.0%
TACATCATCGCTCAACTCCT+CGG - chr7_2:78922294-78922313 Msa1079730:CDS 45.0%
!! CGAGAAGTATCTTACCGAAG+CGG + chr7_2:78922355-78922374 None:intergenic 45.0%
CGCTTCGGTAAGATACTTCT+CGG - chr7_2:78922353-78922372 Msa1079730:CDS 45.0%
TTGCAGTCTGTTCCAGCATT+CGG - chr7_2:78922528-78922547 Msa1079730:intron 45.0%
ACAATCTCCAACACCAAAGC+TGG + chr7_2:78922579-78922598 None:intergenic 45.0%
CACTGTGTACACCAATCCAA+AGG + chr7_2:78922607-78922626 None:intergenic 45.0%
GTTACCCTTCTTTGGGTCAA+CGG + chr7_2:78922640-78922659 None:intergenic 45.0%
GACCCAAAGAAGGGTAACAT+TGG - chr7_2:78922642-78922661 Msa1079730:intron 45.0%
!!! GGTGCTAACATTTTGGTTGG+TGG - chr7_2:78922699-78922718 Msa1079730:CDS 45.0%
! ATGAACCCAGCAGTGTCATT+CGG - chr7_2:78922741-78922760 Msa1079730:CDS 45.0%
CAATTCCACCACCGATAAGT+GGG + chr7_2:78922818-78922837 None:intergenic 45.0%
!! TTATCGGTGGTGGAATTGCT+GGG - chr7_2:78922820-78922839 Msa1079730:CDS 45.0%
AATTGCTGGGCTTGTCTATG+AGG - chr7_2:78922833-78922852 Msa1079730:CDS 45.0%
! CCCAACTACTGACTACTAGA+TGG - chr7_2:78922887-78922906 Msa1079730:CDS 45.0%
CCCATCTAGTAGTCAGTAGT+TGG + chr7_2:78922891-78922910 None:intergenic 45.0%
AAATGGTGGCCGTTGATCTT+TGG - chr7_2:78923031-78923050 Msa1079730:exon 45.0%
AACCGGTAACCCGTTACAAC+CGG - chr7_2:78921833-78921852 Msa1079730:three_prime_UTR 50.0%
CCGATCAGAAACATCGCTGT+AGG - chr7_2:78921982-78922001 Msa1079730:three_prime_UTR 50.0%
CTCAGCCAAACCAGCTTTCA+AGG + chr7_2:78922037-78922056 None:intergenic 50.0%
ACCGGCGAAGACAAAGATGA+AGG + chr7_2:78922070-78922089 None:intergenic 50.0%
!! ATCTTTGTCTTCGCCGGTTC+AGG - chr7_2:78922072-78922091 Msa1079730:three_prime_UTR 50.0%
CTCTTTGTTGCTGTCTCCGT+TGG - chr7_2:78922183-78922202 Msa1079730:CDS 50.0%
!! TCCGTTGGTGCTAACATCTC+CGG - chr7_2:78922198-78922217 Msa1079730:CDS 50.0%
ACCGGAGATGTTAGCACCAA+CGG + chr7_2:78922202-78922221 None:intergenic 50.0%
GGTGATGTTACCACCAACGA+AGG + chr7_2:78922256-78922275 None:intergenic 50.0%
GTAAACGATACCACGGAGGA+GGG + chr7_2:78922277-78922296 None:intergenic 50.0%
TGTAAACGATACCACGGAGG+AGG + chr7_2:78922278-78922297 None:intergenic 50.0%
AGCGGTAACAAAGACGAGGA+GGG + chr7_2:78922337-78922356 None:intergenic 50.0%
AAGCGGTAACAAAGACGAGG+AGG + chr7_2:78922338-78922357 None:intergenic 50.0%
CCTCGTCTTTGTTACCGCTT+CGG - chr7_2:78922338-78922357 Msa1079730:CDS 50.0%
TCCAGCATTCGGACTATCAG+AGG - chr7_2:78922539-78922558 Msa1079730:intron 50.0%
CCAGCATTCGGACTATCAGA+GGG - chr7_2:78922540-78922559 Msa1079730:intron 50.0%
TTCGGACTATCAGAGGGAGT+TGG - chr7_2:78922546-78922565 Msa1079730:intron 50.0%
CTATCAGAGGGAGTTGGAGT+TGG - chr7_2:78922552-78922571 Msa1079730:intron 50.0%
AGTTGGAGTTGGACCAGCTT+TGG - chr7_2:78922563-78922582 Msa1079730:intron 50.0%
! AGTTGGACCAGCTTTGGTGT+TGG - chr7_2:78922569-78922588 Msa1079730:intron 50.0%
TACAGCCGTTGACCCAAAGA+AGG - chr7_2:78922632-78922651 Msa1079730:intron 50.0%
ACAGCCGTTGACCCAAAGAA+GGG - chr7_2:78922633-78922652 Msa1079730:intron 50.0%
!! TTGGTTGGTGGAGCCTTTAC+CGG - chr7_2:78922711-78922730 Msa1079730:CDS 50.0%
GTTCATGGATGCTCCGGTAA+AGG + chr7_2:78922727-78922746 None:intergenic 50.0%
GAATGACACTGCTGGGTTCA+TGG + chr7_2:78922742-78922761 None:intergenic 50.0%
! TGAACCCAGCAGTGTCATTC+GGG - chr7_2:78922742-78922761 Msa1079730:CDS 50.0%
GCAATTCCACCACCGATAAG+TGG + chr7_2:78922819-78922838 None:intergenic 50.0%
!! CTTATCGGTGGTGGAATTGC+TGG - chr7_2:78922819-78922838 Msa1079730:CDS 50.0%
AGTAGTTGGGAGCTGCTCAT+GGG + chr7_2:78922877-78922896 None:intergenic 50.0%
TTGTACATGCTTGGCCTAGC+AGG - chr7_2:78923096-78923115 Msa1079730:five_prime_UTR 50.0%
! CTGCTGACTAAGAACCTGCT+AGG + chr7_2:78923113-78923132 None:intergenic 50.0%
CTAGCAGGTTCTTAGTCAGC+AGG - chr7_2:78923111-78923130 Msa1079730:five_prime_UTR 50.0%
AACCGGTAACCCGTTACAAC+CGG - chr7_2:78921833-78921852 Msa1079730:three_prime_UTR 50.0%
CCGATCAGAAACATCGCTGT+AGG - chr7_2:78921982-78922001 Msa1079730:three_prime_UTR 50.0%
CTCAGCCAAACCAGCTTTCA+AGG + chr7_2:78922037-78922056 None:intergenic 50.0%
ACCGGCGAAGACAAAGATGA+AGG + chr7_2:78922070-78922089 None:intergenic 50.0%
!! ATCTTTGTCTTCGCCGGTTC+AGG - chr7_2:78922072-78922091 Msa1079730:three_prime_UTR 50.0%
CTCTTTGTTGCTGTCTCCGT+TGG - chr7_2:78922183-78922202 Msa1079730:CDS 50.0%
!! TCCGTTGGTGCTAACATCTC+CGG - chr7_2:78922198-78922217 Msa1079730:CDS 50.0%
ACCGGAGATGTTAGCACCAA+CGG + chr7_2:78922202-78922221 None:intergenic 50.0%
GGTGATGTTACCACCAACGA+AGG + chr7_2:78922256-78922275 None:intergenic 50.0%
GTAAACGATACCACGGAGGA+GGG + chr7_2:78922277-78922296 None:intergenic 50.0%
TGTAAACGATACCACGGAGG+AGG + chr7_2:78922278-78922297 None:intergenic 50.0%
AGCGGTAACAAAGACGAGGA+GGG + chr7_2:78922337-78922356 None:intergenic 50.0%
AAGCGGTAACAAAGACGAGG+AGG + chr7_2:78922338-78922357 None:intergenic 50.0%
CCTCGTCTTTGTTACCGCTT+CGG - chr7_2:78922338-78922357 Msa1079730:CDS 50.0%
TCCAGCATTCGGACTATCAG+AGG - chr7_2:78922539-78922558 Msa1079730:intron 50.0%
CCAGCATTCGGACTATCAGA+GGG - chr7_2:78922540-78922559 Msa1079730:intron 50.0%
TTCGGACTATCAGAGGGAGT+TGG - chr7_2:78922546-78922565 Msa1079730:intron 50.0%
CTATCAGAGGGAGTTGGAGT+TGG - chr7_2:78922552-78922571 Msa1079730:intron 50.0%
AGTTGGAGTTGGACCAGCTT+TGG - chr7_2:78922563-78922582 Msa1079730:intron 50.0%
! AGTTGGACCAGCTTTGGTGT+TGG - chr7_2:78922569-78922588 Msa1079730:intron 50.0%
TACAGCCGTTGACCCAAAGA+AGG - chr7_2:78922632-78922651 Msa1079730:intron 50.0%
ACAGCCGTTGACCCAAAGAA+GGG - chr7_2:78922633-78922652 Msa1079730:intron 50.0%
!! TTGGTTGGTGGAGCCTTTAC+CGG - chr7_2:78922711-78922730 Msa1079730:CDS 50.0%
GTTCATGGATGCTCCGGTAA+AGG + chr7_2:78922727-78922746 None:intergenic 50.0%
GAATGACACTGCTGGGTTCA+TGG + chr7_2:78922742-78922761 None:intergenic 50.0%
! TGAACCCAGCAGTGTCATTC+GGG - chr7_2:78922742-78922761 Msa1079730:CDS 50.0%
GCAATTCCACCACCGATAAG+TGG + chr7_2:78922819-78922838 None:intergenic 50.0%
!! CTTATCGGTGGTGGAATTGC+TGG - chr7_2:78922819-78922838 Msa1079730:CDS 50.0%
AGTAGTTGGGAGCTGCTCAT+GGG + chr7_2:78922877-78922896 None:intergenic 50.0%
TTGTACATGCTTGGCCTAGC+AGG - chr7_2:78923096-78923115 Msa1079730:five_prime_UTR 50.0%
! CTGCTGACTAAGAACCTGCT+AGG + chr7_2:78923113-78923132 None:intergenic 50.0%
CTAGCAGGTTCTTAGTCAGC+AGG - chr7_2:78923111-78923130 Msa1079730:five_prime_UTR 50.0%
!! CACCGGTTGTAACGGGTTAC+CGG + chr7_2:78921838-78921857 None:intergenic 55.0%
CAACCGGTGAACCAAAAGGC+CGG - chr7_2:78921849-78921868 Msa1079730:three_prime_UTR 55.0%
! ATGGAGAACGACCGGCCTTT+TGG + chr7_2:78921863-78921882 None:intergenic 55.0%
CGCTGTAGGAACTCCTCAAG+AGG - chr7_2:78921996-78922015 Msa1079730:three_prime_UTR 55.0%
TCTGGGTGAGTTGCCTCTTG+AGG + chr7_2:78922012-78922031 None:intergenic 55.0%
CACCCAGACACCTTGAAAGC+TGG - chr7_2:78922024-78922043 Msa1079730:three_prime_UTR 55.0%
TGCGATACCGGAACCTGAAC+CGG + chr7_2:78922088-78922107 None:intergenic 55.0%
GATGGAGGCAGAGATGAGAC+CGG + chr7_2:78922148-78922167 None:intergenic 55.0%
!! GTTGGTGCTAACATCTCCGG+TGG - chr7_2:78922201-78922220 Msa1079730:CDS 55.0%
GGTAACAAAGACGAGGAGGG+CGG + chr7_2:78922334-78922353 None:intergenic 55.0%
CCGAAGCGGTAACAAAGACG+AGG + chr7_2:78922341-78922360 None:intergenic 55.0%
CCCTCTGATAGTCCGAATGC+TGG + chr7_2:78922543-78922562 None:intergenic 55.0%
TGCTGGGTTCATGGATGCTC+CGG + chr7_2:78922733-78922752 None:intergenic 55.0%
GTCCAACCACTGGGTCTACT+GGG - chr7_2:78922788-78922807 Msa1079730:CDS 55.0%
!! TACTGGGCTGGCCCACTTAT+CGG - chr7_2:78922804-78922823 Msa1079730:CDS 55.0%
CAGTAGTTGGGAGCTGCTCA+TGG + chr7_2:78922878-78922897 None:intergenic 55.0%
!! CACCGGTTGTAACGGGTTAC+CGG + chr7_2:78921838-78921857 None:intergenic 55.0%
CAACCGGTGAACCAAAAGGC+CGG - chr7_2:78921849-78921868 Msa1079730:three_prime_UTR 55.0%
! ATGGAGAACGACCGGCCTTT+TGG + chr7_2:78921863-78921882 None:intergenic 55.0%
CGCTGTAGGAACTCCTCAAG+AGG - chr7_2:78921996-78922015 Msa1079730:three_prime_UTR 55.0%
TCTGGGTGAGTTGCCTCTTG+AGG + chr7_2:78922012-78922031 None:intergenic 55.0%
CACCCAGACACCTTGAAAGC+TGG - chr7_2:78922024-78922043 Msa1079730:three_prime_UTR 55.0%
TGCGATACCGGAACCTGAAC+CGG + chr7_2:78922088-78922107 None:intergenic 55.0%
GATGGAGGCAGAGATGAGAC+CGG + chr7_2:78922148-78922167 None:intergenic 55.0%
!! GTTGGTGCTAACATCTCCGG+TGG - chr7_2:78922201-78922220 Msa1079730:CDS 55.0%
GGTAACAAAGACGAGGAGGG+CGG + chr7_2:78922334-78922353 None:intergenic 55.0%
CCGAAGCGGTAACAAAGACG+AGG + chr7_2:78922341-78922360 None:intergenic 55.0%
CCCTCTGATAGTCCGAATGC+TGG + chr7_2:78922543-78922562 None:intergenic 55.0%
TGCTGGGTTCATGGATGCTC+CGG + chr7_2:78922733-78922752 None:intergenic 55.0%
GTCCAACCACTGGGTCTACT+GGG - chr7_2:78922788-78922807 Msa1079730:CDS 55.0%
!! TACTGGGCTGGCCCACTTAT+CGG - chr7_2:78922804-78922823 Msa1079730:CDS 55.0%
CAGTAGTTGGGAGCTGCTCA+TGG + chr7_2:78922878-78922897 None:intergenic 55.0%
!!! CGACCGGCCTTTTGGTTCAC+CGG + chr7_2:78921855-78921874 None:intergenic 60.0%
!! GTCTTCGCCGGTTCAGGTTC+CGG - chr7_2:78922078-78922097 Msa1079730:three_prime_UTR 60.0%
AGGCAGAGATGAGACCGGCA+GGG + chr7_2:78922143-78922162 None:intergenic 60.0%
AGCGAATGCATGGGCGATGG+AGG + chr7_2:78922163-78922182 None:intergenic 60.0%
GAGAGCGAATGCATGGGCGA+TGG + chr7_2:78922166-78922185 None:intergenic 60.0%
AGCGGGGTTGACATGTCCAC+CGG + chr7_2:78922220-78922239 None:intergenic 60.0%
GTCAACCCCGCTGTCACCTT+CGG - chr7_2:78922228-78922247 Msa1079730:CDS 60.0%
!! AAGGCACCGAAGGTGACAGC+GGG + chr7_2:78922237-78922256 None:intergenic 60.0%
!! GAAGGCACCGAAGGTGACAG+CGG + chr7_2:78922238-78922257 None:intergenic 60.0%
!! GTCACCTTCGGTGCCTTCGT+TGG - chr7_2:78922240-78922259 Msa1079730:CDS 60.0%
!! ACCTTCGGTGCCTTCGTTGG+TGG - chr7_2:78922243-78922262 Msa1079730:CDS 60.0%
!! ACCACCAACGAAGGCACCGA+AGG + chr7_2:78922247-78922266 None:intergenic 60.0%
GGTAACATCACCCTCCTCCG+TGG - chr7_2:78922264-78922283 Msa1079730:CDS 60.0%
CGGAAGCAACGATGGATCCG+AGG + chr7_2:78922314-78922333 None:intergenic 60.0%
CAGGCCCGAATGACACTGCT+GGG + chr7_2:78922749-78922768 None:intergenic 60.0%
CAGCTCCAGCTCACAACAGC+AGG + chr7_2:78922768-78922787 None:intergenic 60.0%
CTGCTGTTGTGAGCTGGAGC+TGG - chr7_2:78922766-78922785 Msa1079730:CDS 60.0%
CTGGAGCTGGTCCAACCACT+GGG - chr7_2:78922779-78922798 Msa1079730:CDS 60.0%
GGTCCAACCACTGGGTCTAC+TGG - chr7_2:78922787-78922806 Msa1079730:CDS 60.0%
AGCCCAGTAGACCCAGTGGT+TGG + chr7_2:78922793-78922812 None:intergenic 60.0%
AACCACTGGGTCTACTGGGC+TGG - chr7_2:78922792-78922811 Msa1079730:CDS 60.0%
!!! CGACCGGCCTTTTGGTTCAC+CGG + chr7_2:78921855-78921874 None:intergenic 60.0%
!! GTCTTCGCCGGTTCAGGTTC+CGG - chr7_2:78922078-78922097 Msa1079730:three_prime_UTR 60.0%
AGGCAGAGATGAGACCGGCA+GGG + chr7_2:78922143-78922162 None:intergenic 60.0%
AGCGAATGCATGGGCGATGG+AGG + chr7_2:78922163-78922182 None:intergenic 60.0%
GAGAGCGAATGCATGGGCGA+TGG + chr7_2:78922166-78922185 None:intergenic 60.0%
AGCGGGGTTGACATGTCCAC+CGG + chr7_2:78922220-78922239 None:intergenic 60.0%
GTCAACCCCGCTGTCACCTT+CGG - chr7_2:78922228-78922247 Msa1079730:CDS 60.0%
!! AAGGCACCGAAGGTGACAGC+GGG + chr7_2:78922237-78922256 None:intergenic 60.0%
!! GAAGGCACCGAAGGTGACAG+CGG + chr7_2:78922238-78922257 None:intergenic 60.0%
!! GTCACCTTCGGTGCCTTCGT+TGG - chr7_2:78922240-78922259 Msa1079730:CDS 60.0%
!! ACCTTCGGTGCCTTCGTTGG+TGG - chr7_2:78922243-78922262 Msa1079730:CDS 60.0%
!! ACCACCAACGAAGGCACCGA+AGG + chr7_2:78922247-78922266 None:intergenic 60.0%
GGTAACATCACCCTCCTCCG+TGG - chr7_2:78922264-78922283 Msa1079730:CDS 60.0%
CGGAAGCAACGATGGATCCG+AGG + chr7_2:78922314-78922333 None:intergenic 60.0%
CAGGCCCGAATGACACTGCT+GGG + chr7_2:78922749-78922768 None:intergenic 60.0%
CAGCTCCAGCTCACAACAGC+AGG + chr7_2:78922768-78922787 None:intergenic 60.0%
CTGCTGTTGTGAGCTGGAGC+TGG - chr7_2:78922766-78922785 Msa1079730:CDS 60.0%
CTGGAGCTGGTCCAACCACT+GGG - chr7_2:78922779-78922798 Msa1079730:CDS 60.0%
GGTCCAACCACTGGGTCTAC+TGG - chr7_2:78922787-78922806 Msa1079730:CDS 60.0%
AGCCCAGTAGACCCAGTGGT+TGG + chr7_2:78922793-78922812 None:intergenic 60.0%
AACCACTGGGTCTACTGGGC+TGG - chr7_2:78922792-78922811 Msa1079730:CDS 60.0%
AGAGATGAGACCGGCAGGGG+TGG + chr7_2:78922139-78922158 None:intergenic 65.0%
GGCAGAGATGAGACCGGCAG+GGG + chr7_2:78922142-78922161 None:intergenic 65.0%
GAGGCAGAGATGAGACCGGC+AGG + chr7_2:78922144-78922163 None:intergenic 65.0%
!! AGGCACCGAAGGTGACAGCG+GGG + chr7_2:78922236-78922255 None:intergenic 65.0%
GAGGAGGGCGGAAGCAACGA+TGG + chr7_2:78922322-78922341 None:intergenic 65.0%
GCAGGCCCGAATGACACTGC+TGG + chr7_2:78922750-78922769 None:intergenic 65.0%
TCGGGCCTGCTGTTGTGAGC+TGG - chr7_2:78922760-78922779 Msa1079730:CDS 65.0%
GCTGGAGCTGGTCCAACCAC+TGG - chr7_2:78922778-78922797 Msa1079730:CDS 65.0%
!! TGGGCTGGCCCACTTATCGG+TGG - chr7_2:78922807-78922826 Msa1079730:CDS 65.0%
GCTGGCCCACTTATCGGTGG+TGG - chr7_2:78922810-78922829 Msa1079730:CDS 65.0%
AGAGATGAGACCGGCAGGGG+TGG + chr7_2:78922139-78922158 None:intergenic 65.0%
GGCAGAGATGAGACCGGCAG+GGG + chr7_2:78922142-78922161 None:intergenic 65.0%
GAGGCAGAGATGAGACCGGC+AGG + chr7_2:78922144-78922163 None:intergenic 65.0%
!! AGGCACCGAAGGTGACAGCG+GGG + chr7_2:78922236-78922255 None:intergenic 65.0%
GAGGAGGGCGGAAGCAACGA+TGG + chr7_2:78922322-78922341 None:intergenic 65.0%
GCAGGCCCGAATGACACTGC+TGG + chr7_2:78922750-78922769 None:intergenic 65.0%
TCGGGCCTGCTGTTGTGAGC+TGG - chr7_2:78922760-78922779 Msa1079730:CDS 65.0%
GCTGGAGCTGGTCCAACCAC+TGG - chr7_2:78922778-78922797 Msa1079730:CDS 65.0%
!! TGGGCTGGCCCACTTATCGG+TGG - chr7_2:78922807-78922826 Msa1079730:CDS 65.0%
GCTGGCCCACTTATCGGTGG+TGG - chr7_2:78922810-78922829 Msa1079730:CDS 65.0%
AGGGGTGGCAGCACCGTCGT+TGG + chr7_2:78922124-78922143 None:intergenic 70.0%
GGCCAGCCCAGTAGACCCAG+TGG + chr7_2:78922797-78922816 None:intergenic 70.0%
AGGGGTGGCAGCACCGTCGT+TGG + chr7_2:78922124-78922143 None:intergenic 70.0%
GGCCAGCCCAGTAGACCCAG+TGG + chr7_2:78922797-78922816 None:intergenic 70.0%
!! GACGGTGCTGCCACCCCTGC+CGG - chr7_2:78922126-78922145 Msa1079730:CDS 75.0%
!! GACGGTGCTGCCACCCCTGC+CGG - chr7_2:78922126-78922145 Msa1079730:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 78921730 78923280 78921730 ID=Msa1079730;Name=Msa1079730
chr7_2 mRNA 78921730 78923280 78921730 ID=Msa1079730-mRNA-1;Parent=Msa1079730;Name=Msa1079730-mRNA-1;_AED=0.02;_eAED=0.02;_QI=249|1|1|1|1|1|2|375|250
chr7_2 exon 78921730 78922476 78921730 ID=Msa1079730-mRNA-1:exon:19747;Parent=Msa1079730-mRNA-1
chr7_2 exon 78922651 78923280 78922651 ID=Msa1079730-mRNA-1:exon:19746;Parent=Msa1079730-mRNA-1
chr7_2 five_prime_UTR 78923032 78923280 78923032 ID=Msa1079730-mRNA-1:five_prime_utr;Parent=Msa1079730-mRNA-1
chr7_2 CDS 78922651 78923031 78922651 ID=Msa1079730-mRNA-1:cds;Parent=Msa1079730-mRNA-1
chr7_2 CDS 78922105 78922476 78922105 ID=Msa1079730-mRNA-1:cds;Parent=Msa1079730-mRNA-1
chr7_2 three_prime_UTR 78921730 78922104 78921730 ID=Msa1079730-mRNA-1:three_prime_utr;Parent=Msa1079730-mRNA-1
Gene Sequence

>Msa1079730

ATGCCGATCAGAAACATCGCTGTAGGAACTCCTCAAGAGGCAACTCACCCAGACACCTTGAAAGCTGGTTTGGCTGAGTTCATCTCAACCTTCATCTTTGTCTTCGCCGGTTCAGGTTCCGGTATCGCATACAACAAGCTTACCAACGACGGTGCTGCCACCCCTGCCGGTCTCATCTCTGCCTCCATCGCCCATGCATTCGCTCTCTTTGTTGCTGTCTCCGTTGGTGCTAACATCTCCGGTGGACATGTCAACCCCGCTGTCACCTTCGGTGCCTTCGTTGGTGGTAACATCACCCTCCTCCGTGGTATCGTTTACATCATCGCTCAACTCCTCGGATCCATCGTTGCTTCCGCCCTCCTCGTCTTTGTTACCGCTTCGTCTGTTCCAGCATTCGGACTATCAGAGGGAGTTGGAGTTGGACCAGCTTTGGTGTTGGAGATTGTGATGACCTTTGGATTGGTGTACACAGTGTATGCTACAGCCGTTGACCCAAAGAAGGGTAACATTGGAATTATTGCACCAATTGCTATTGGTTTCATTGTTGGTGCTAACATTTTGGTTGGTGGAGCCTTTACCGGAGCATCCATGAACCCAGCAGTGTCATTCGGGCCTGCTGTTGTGAGCTGGAGCTGGTCCAACCACTGGGTCTACTGGGCTGGCCCACTTATCGGTGGTGGAATTGCTGGGCTTGTCTATGAGGTTCTATTCATCAACAGCACCCATGAGCAGCTCCCAACTACTGACTACTAG

Protein sequence

>Msa1079730

MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTASSVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWVYWAGPLIGGGIAGLVYEVLFINSTHEQLPTTDY*