AlfalfaGEDB | Msa1079730

M. sativa cultivar zhongmu-4 / Msa1079730

KEGG: K09873
GO: GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0006855 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009705 GO:0009941 GO:0012505 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0015893 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0030104 GO:0031012 GO:0031090 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0042493 GO:0042592 GO:0042742 GO:0042807 GO:0042886 GO:0042887 GO:0042891 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043667 GO:0043668 GO:0043673 GO:0043674 GO:0044420 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048878 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0080170 GO:0098542 GO:0098588 GO:0098805
PFAM: PF00230.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079730	XP_013450030.1	100.000	250	0	0	1	250	1	250	6.86e-171	481

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079730	sp\|Q9FY14\|TIP1_MEDTR	100.000	250	0	0	1	250	1	250	8.56e-174	481

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079730	A0A072U4J6	100.000	250	0	0	1	250	1	250	3.28e-171	481

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa1079730	0.804970	1.673078e-49	-8.615850e-47
Msa0005350	Msa1079730	-0.800163	1.639684e-48	-8.615850e-47
Msa0006040	Msa1079730	-0.817125	3.878943e-52	-8.615850e-47
Msa0007080	Msa1079730	-0.812329	4.477706e-51	-8.615850e-47
Msa0013050	Msa1079730	0.810541	1.094879e-50	-8.615850e-47
Msa0015100	Msa1079730	-0.819702	1.011127e-52	-8.615850e-47
Msa0023470	Msa1079730	-0.822764	1.989201e-53	-8.615850e-47
Msa0029850	Msa1079730	-0.826492	2.633846e-54	-8.615850e-47
Msa0032610	Msa1079730	-0.807778	4.281497e-50	-8.615850e-47
Msa0042980	Msa1079730	0.885636	6.854603e-72	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079730	MtrunA17_Chr7g0264961	100.000	250	0	0	1	250	1	250	6.31e-175	481
Msa1079730	MtrunA17_Chr4g0030861	74.603	252	62	2	1	250	1	252	4.39e-121	345
Msa1079730	MtrunA17_Chr1g0212671	67.460	252	80	2	1	250	1	252	1.19e-114	328
Msa1079730	MtrunA17_Chr7g0222791	69.841	252	74	2	1	250	1	252	7.89e-110	317
Msa1079730	MtrunA17_Chr2g0331261	61.224	245	94	1	4	247	3	247	1.22e-95	280
Msa1079730	MtrunA17_Chr8g0340161	61.847	249	93	2	3	250	1	248	1.89e-94	277
Msa1079730	MtrunA17_Chr1g0188771	54.264	258	110	2	1	250	1	258	2.95e-94	277
Msa1079730	MtrunA17_Chr6g0478191	57.647	255	103	2	1	250	1	255	1.55e-91	270
Msa1079730	MtrunA17_Chr5g0399341	62.602	246	91	1	5	250	3	247	2.20e-90	267
Msa1079730	MtrunA17_Chr1g0146161	53.226	248	111	3	3	249	1	244	6.99e-83	248

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1079730	AT2G36830.1	79.681	251	50	1	1	250	1	251	1.23e-141	397
Msa1079730	AT3G26520.1	75.099	253	60	3	1	250	1	253	3.24e-130	369
Msa1079730	AT4G01470.1	71.825	252	69	2	1	250	1	252	2.85e-121	346
Msa1079730	AT5G47450.1	62.195	246	91	2	5	249	3	247	2.82e-95	280
Msa1079730	AT3G16240.1	57.600	250	104	2	3	250	1	250	1.04e-89	266
Msa1079730	AT1G73190.1	56.107	262	100	3	4	250	7	268	5.80e-87	259
Msa1079730	AT1G17810.1	55.939	261	101	3	4	250	7	267	1.16e-86	258
Msa1079730	AT4G17340.1	60.976	246	94	2	5	249	3	247	1.01e-84	253
Msa1079730	AT2G25810.1	50.403	248	116	4	3	249	1	242	7.78e-72	220
Msa1079730	AT3G47440.1	45.662	219	115	4	18	234	20	236	2.57e-49	163

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Find 135 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGCTTTCAAGGTGTC+TGG	0.380207	7_2:+78922961	None:intergenic
AAATGGTGGCCGTTGATCTT+TGG	0.379333	7_2:-78921957	Msa1079730:three_prime_UTR
AAATTATAACATTGATTCAG+TGG	0.559617	7_2:+78921850	None:intergenic
AACAAAGAGAGCGAATGCAT+GGG	0.618823	7_2:+78922819	None:intergenic
AACCACTGGGTCTACTGGGC+TGG	0.414067	7_2:-78922196	Msa1079730:CDS
AACCAGCTTTCAAGGTGTCT+GGG	0.534447	7_2:+78922962	None:intergenic
AACCGGTAACCCGTTACAAC+CGG	0.439821	7_2:-78923155	Msa1079730:five_prime_UTR
AACGTACAACCAAAGATCAA+CGG	0.631888	7_2:+78921948	None:intergenic
AAGCGGTAACAAAGACGAGG+AGG	0.654245	7_2:+78922653	None:intergenic
AAGCTTGTTGTATGCGATAC+CGG	0.471031	7_2:+78922891	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGCTTGTGTCTTACTTATA+TGG	+	chr7_2:78921882-78921901	None:intergenic	30.0%
TATAAGTAAGACACAAGCAT+AGG	-	chr7_2:78921882-78921901	Msa1079730:three_prime_UTR	30.0%
AATTAAACTCTTGCACGTTA+GGG	+	chr7_2:78922444-78922463	None:intergenic	30.0%
AAATTAAACTCTTGCACGTT+AGG	+	chr7_2:78922445-78922464	None:intergenic	30.0%
ATTATTGCACCAATTGCTAT+TGG	-	chr7_2:78922666-78922685	Msa1079730:CDS	30.0%
ACAATGAAACCAATAGCAAT+TGG	+	chr7_2:78922678-78922697	None:intergenic	30.0%
ATGCTTGTGTCTTACTTATA+TGG	+	chr7_2:78921882-78921901	None:intergenic	30.0%
TATAAGTAAGACACAAGCAT+AGG	-	chr7_2:78921882-78921901	Msa1079730:three_prime_UTR	30.0%
AATTAAACTCTTGCACGTTA+GGG	+	chr7_2:78922444-78922463	None:intergenic	30.0%
AAATTAAACTCTTGCACGTT+AGG	+	chr7_2:78922445-78922464	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	78921730	78923280	78921730	ID=Msa1079730;Name=Msa1079730
chr7_2	mRNA	78921730	78923280	78921730	ID=Msa1079730-mRNA-1;Parent=Msa1079730;Name=Msa1079730-mRNA-1;_AED=0.02;_eAED=0.02;_QI=249\|1\|1\|1\|1\|1\|2\|375\|250
chr7_2	exon	78921730	78922476	78921730	ID=Msa1079730-mRNA-1:exon:19747;Parent=Msa1079730-mRNA-1
chr7_2	exon	78922651	78923280	78922651	ID=Msa1079730-mRNA-1:exon:19746;Parent=Msa1079730-mRNA-1
chr7_2	five_prime_UTR	78923032	78923280	78923032	ID=Msa1079730-mRNA-1:five_prime_utr;Parent=Msa1079730-mRNA-1
chr7_2	CDS	78922651	78923031	78922651	ID=Msa1079730-mRNA-1:cds;Parent=Msa1079730-mRNA-1
chr7_2	CDS	78922105	78922476	78922105	ID=Msa1079730-mRNA-1:cds;Parent=Msa1079730-mRNA-1
chr7_2	three_prime_UTR	78921730	78922104	78921730	ID=Msa1079730-mRNA-1:three_prime_utr;Parent=Msa1079730-mRNA-1

Gene Sequence

>Msa1079730

ATGCCGATCAGAAACATCGCTGTAGGAACTCCTCAAGAGGCAACTCACCCAGACACCTTGAAAGCTGGTTTGGCTGAGTTCATCTCAACCTTCATCTTTGTCTTCGCCGGTTCAGGTTCCGGTATCGCATACAACAAGCTTACCAACGACGGTGCTGCCACCCCTGCCGGTCTCATCTCTGCCTCCATCGCCCATGCATTCGCTCTCTTTGTTGCTGTCTCCGTTGGTGCTAACATCTCCGGTGGACATGTCAACCCCGCTGTCACCTTCGGTGCCTTCGTTGGTGGTAACATCACCCTCCTCCGTGGTATCGTTTACATCATCGCTCAACTCCTCGGATCCATCGTTGCTTCCGCCCTCCTCGTCTTTGTTACCGCTTCGTCTGTTCCAGCATTCGGACTATCAGAGGGAGTTGGAGTTGGACCAGCTTTGGTGTTGGAGATTGTGATGACCTTTGGATTGGTGTACACAGTGTATGCTACAGCCGTTGACCCAAAGAAGGGTAACATTGGAATTATTGCACCAATTGCTATTGGTTTCATTGTTGGTGCTAACATTTTGGTTGGTGGAGCCTTTACCGGAGCATCCATGAACCCAGCAGTGTCATTCGGGCCTGCTGTTGTGAGCTGGAGCTGGTCCAACCACTGGGTCTACTGGGCTGGCCCACTTATCGGTGGTGGAATTGCTGGGCTTGTCTATGAGGTTCTATTCATCAACAGCACCCATGAGCAGCTCCCAACTACTGACTACTAG

Protein sequence

>Msa1079730

MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTASSVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWVYWAGPLIGGGIAGLVYEVLFINSTHEQLPTTDY*