AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1168040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1168040 MtrunA17_Chr7g0264961 100.000 250 0 0 1 250 1 250 6.31e-175 481
Msa1168040 MtrunA17_Chr4g0030861 74.603 252 62 2 1 250 1 252 4.39e-121 345
Msa1168040 MtrunA17_Chr1g0212671 67.460 252 80 2 1 250 1 252 1.19e-114 328
Msa1168040 MtrunA17_Chr7g0222791 69.841 252 74 2 1 250 1 252 7.89e-110 317
Msa1168040 MtrunA17_Chr2g0331261 61.224 245 94 1 4 247 3 247 1.22e-95 280
Msa1168040 MtrunA17_Chr8g0340161 61.847 249 93 2 3 250 1 248 1.89e-94 277
Msa1168040 MtrunA17_Chr1g0188771 54.264 258 110 2 1 250 1 258 2.95e-94 277
Msa1168040 MtrunA17_Chr6g0478191 57.647 255 103 2 1 250 1 255 1.55e-91 270
Msa1168040 MtrunA17_Chr5g0399341 62.602 246 91 1 5 250 3 247 2.20e-90 267
Msa1168040 MtrunA17_Chr1g0146161 53.226 248 111 3 3 249 1 244 6.99e-83 248
Msa1168040 MtrunA17_Chr1g0146171 52.869 244 110 3 3 245 1 240 3.57e-79 238
Msa1168040 MtrunA17_Chr4g0020781 42.079 202 114 3 46 245 4 204 9.81e-43 144
Msa1168040 MtrunA17_Chr2g0326621 36.653 251 141 6 12 245 31 280 9.65e-40 139
Msa1168040 MtrunA17_Chr1g0199731 36.515 241 136 5 12 236 30 269 1.41e-36 130
Msa1168040 MtrunA17_Chr4g0006001 35.965 228 131 5 21 236 56 280 7.87e-36 129
Msa1168040 MtrunA17_Chr7g0264111 36.087 230 130 5 21 234 39 267 7.18e-35 126
Msa1168040 MtrunA17_Chr4g0029071 34.800 250 146 6 12 245 30 278 1.00e-34 125
Msa1168040 MtrunA17_Chr3g0145671 36.986 219 119 6 21 225 37 250 7.45e-34 123
Msa1168040 MtrunA17_Chr3g0113211 34.310 239 141 5 11 236 45 280 7.51e-33 120
Msa1168040 MtrunA17_Chr5g0397391 34.016 244 137 6 10 236 41 277 8.70e-33 120
Msa1168040 MtrunA17_Chr8g0386961 33.333 243 138 6 11 236 42 277 1.17e-32 120
Msa1168040 MtrunA17_Chr5g0426131 33.735 249 149 4 4 248 23 259 3.76e-32 118
Msa1168040 MtrunA17_Chr5g0436701 34.286 245 140 7 11 240 45 283 3.02e-31 116
Msa1168040 MtrunA17_Chr2g0284611 34.468 235 145 5 16 248 33 260 1.13e-27 107
Msa1168040 MtrunA17_Chr2g0284591 34.016 244 150 5 1 240 13 249 2.11e-27 106
Msa1168040 MtrunA17_Chr3g0079421 36.638 232 122 9 25 249 30 243 1.10e-25 101
Msa1168040 MtrunA17_Chr8g0379901 35.616 219 131 6 20 236 38 248 1.95e-25 101
Msa1168040 MtrunA17_Chr5g0435051 33.937 221 131 5 20 236 39 248 6.67e-25 99.8
Msa1168040 MtrunA17_Chr2g0284631 33.621 232 140 6 20 249 90 309 8.77e-25 100
Msa1168040 MtrunA17_Chr4g0001221 36.893 206 113 5 25 225 79 272 2.40e-23 96.3
Msa1168040 MtrunA17_Chr8g0379911 32.365 241 143 7 4 236 19 247 5.11e-23 94.4
Msa1168040 MtrunA17_Chr2g0333771 35.922 206 115 6 25 225 84 277 5.30e-23 95.1
Msa1168040 MtrunA17_Chr7g0217331 32.751 229 147 3 21 249 37 258 1.66e-22 93.2
Msa1168040 MtrunA17_Chr2g0284581 32.889 225 141 6 20 243 37 252 8.55e-22 91.3
Msa1168040 MtrunA17_Chr1g0184541 30.837 227 148 5 24 249 65 283 1.33e-21 91.3
Msa1168040 MtrunA17_Chr1g0201331 33.913 230 140 7 19 246 73 292 5.13e-21 89.7
Msa1168040 MtrunA17_Chr4g0044201 30.493 223 126 5 20 236 34 233 3.35e-20 86.7
Msa1168040 MtrunA17_Chr2g0284601 34.171 199 123 5 46 243 13 204 3.75e-19 83.2
Msa1168040 MtrunA17_Chr4g0038591 28.235 255 149 9 12 243 42 285 1.12e-16 78.2
Msa1168040 MtrunA17_Chr6g0467461 36.364 110 50 3 129 237 3 93 1.37e-13 65.5
Msa1168040 MtrunA17_Chr4g0038611 29.703 202 115 7 69 249 33 228 3.92e-13 67.4
Msa1168040 MtrunA17_Chr8g0362451 34.314 102 48 2 143 244 6 88 9.66e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1168040 AT2G36830.1 79.681 251 50 1 1 250 1 251 1.23e-141 397
Msa1168040 AT3G26520.1 75.099 253 60 3 1 250 1 253 3.24e-130 369
Msa1168040 AT4G01470.1 71.825 252 69 2 1 250 1 252 2.85e-121 346
Msa1168040 AT5G47450.1 62.195 246 91 2 5 249 3 247 2.82e-95 280
Msa1168040 AT3G16240.1 57.600 250 104 2 3 250 1 250 1.04e-89 266
Msa1168040 AT1G73190.1 56.107 262 100 3 4 250 7 268 5.80e-87 259
Msa1168040 AT1G17810.1 55.939 261 101 3 4 250 7 267 1.16e-86 258
Msa1168040 AT4G17340.1 60.976 246 94 2 5 249 3 247 1.01e-84 253
Msa1168040 AT2G25810.1 50.403 248 116 4 3 249 1 242 7.78e-72 220
Msa1168040 AT3G47440.1 45.662 219 115 4 18 234 20 236 2.57e-49 163
Msa1168040 AT2G37170.1 36.255 251 141 7 12 245 28 276 2.37e-38 135
Msa1168040 AT2G37170.2 36.255 251 141 7 12 245 71 319 3.43e-38 136
Msa1168040 AT2G37180.1 36.255 251 141 7 12 245 28 276 4.00e-38 135
Msa1168040 AT3G53420.1 37.344 241 134 6 21 245 39 278 2.09e-37 133
Msa1168040 AT3G53420.2 37.344 241 134 6 21 245 39 278 2.09e-37 133
Msa1168040 AT2G39010.1 34.940 249 142 6 2 234 22 266 2.88e-37 132
Msa1168040 AT3G54820.1 36.522 230 129 5 21 234 38 266 5.31e-37 132
Msa1168040 AT5G60660.1 35.270 241 139 6 12 236 30 269 1.59e-34 125
Msa1168040 AT2G16850.1 37.327 217 121 5 21 225 36 249 1.61e-34 125
Msa1168040 AT4G35100.1 35.865 237 137 5 21 245 38 271 3.46e-34 124
Msa1168040 AT4G35100.2 35.865 237 137 5 21 245 38 271 3.46e-34 124
Msa1168040 AT4G00430.1 34.454 238 141 5 11 236 43 277 2.06e-33 122
Msa1168040 AT3G61430.2 36.638 232 131 6 21 240 52 279 2.41e-33 122
Msa1168040 AT3G61430.1 36.638 232 131 6 21 240 52 279 2.41e-33 122
Msa1168040 AT2G45960.1 36.207 232 132 6 21 240 52 279 5.11e-33 121
Msa1168040 AT4G23400.1 35.776 232 126 7 21 236 53 277 5.22e-33 121
Msa1168040 AT1G01620.1 34.649 228 134 5 21 236 52 276 2.01e-32 120
Msa1168040 AT1G01620.2 37.234 188 103 5 63 236 18 204 3.38e-28 107
Msa1168040 AT1G80760.1 34.667 225 128 6 25 243 84 295 1.68e-25 102
Msa1168040 AT2G45960.3 33.790 219 120 6 21 217 52 267 2.54e-24 99.0
Msa1168040 AT2G45960.2 34.783 207 120 5 21 215 52 255 3.12e-24 98.2
Msa1168040 AT5G37820.1 34.081 223 137 5 24 245 46 259 1.51e-22 94.0
Msa1168040 AT4G10380.1 34.764 233 141 5 17 246 72 296 2.63e-22 93.6
Msa1168040 AT5G37820.2 34.081 223 137 5 24 245 82 295 2.94e-22 94.0
Msa1168040 AT2G39010.2 34.857 175 101 4 2 167 22 192 4.56e-22 91.3
Msa1168040 AT4G19030.1 31.858 226 124 6 20 230 54 264 7.56e-22 92.4
Msa1168040 AT4G18910.1 31.034 232 131 6 20 236 51 268 1.10e-21 91.7
Msa1168040 AT5G37810.1 33.036 224 141 5 24 245 46 262 1.76e-21 90.9
Msa1168040 AT1G52180.1 48.352 91 47 0 125 215 34 124 6.31e-21 85.5
Msa1168040 AT3G06100.1 28.452 239 165 3 2 240 27 259 7.78e-21 89.0
Msa1168040 AT3G06100.2 30.332 211 141 3 24 234 1 205 4.26e-20 86.3
Msa1168040 AT1G31885.1 34.272 213 121 5 24 226 46 249 6.41e-20 87.4
Msa1168040 AT1G31885.2 37.179 156 88 3 78 225 41 194 3.48e-17 79.0
Msa1168040 AT4G00430.2 33.951 162 99 3 11 167 43 201 6.08e-17 77.4
Msa1168040 AT2G34390.1 30.222 225 141 6 20 236 47 263 2.72e-14 71.2
Msa1168040 AT2G34390.2 30.317 221 138 6 24 236 9 221 5.09e-14 70.1
Msa1168040 AT3G06100.3 32.308 130 87 1 105 234 44 172 1.65e-13 67.8
Msa1168040 AT4G19030.3 29.891 184 100 5 20 188 54 223 1.22e-11 62.8

Find 135 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCATAATAGCTCCAAAAT+TGG 0.192946 7_4:-60703623 None:intergenic
ATTCCAATGTTACCCTTCTT+TGG 0.212168 7_4:-60704513 None:intergenic
ATGTTGATTCCTCCCAATTT+TGG 0.212841 7_4:+60703610 Msa1168040:five_prime_UTR
CATTGTTGGTGCTAACATTT+TGG 0.214654 7_4:+60704560 Msa1168040:CDS
CTGAATCAATGTTATAATTT+CGG 0.220298 7_4:+60705003 Msa1168040:three_prime_UTR
AGAAAAGAAACAATGTTATT+TGG 0.222570 7_4:-60703569 None:intergenic
ATGCTTGTGTCTTACTTATA+TGG 0.225708 7_4:-60703716 None:intergenic
GTTACTGTGAAAGCGCTTTC+TGG 0.244535 7_4:-60703767 None:intergenic
TGAATCAATGTTATAATTTC+GGG 0.256983 7_4:+60705004 Msa1168040:three_prime_UTR
GGTCCAACCACTGGGTCTAC+TGG 0.291738 7_4:+60704655 Msa1168040:CDS
TACTGGGCTGGCCCACTTAT+CGG 0.311103 7_4:+60704672 Msa1168040:CDS
CTTATCGGTGGTGGAATTGC+TGG 0.323157 7_4:+60704687 Msa1168040:CDS
GTCTTCGCCGGTTCAGGTTC+CGG 0.329402 7_4:+60703931 Msa1168040:CDS
TTCCAATGTTACCCTTCTTT+GGG 0.343393 7_4:-60704512 None:intergenic
ATTATTGCACCAATTGCTAT+TGG 0.349026 7_4:+60704534 Msa1168040:CDS
TTGGAGATTGTGATGACCTT+TGG 0.349069 7_4:+60704456 Msa1168040:CDS
ATCTTCGTCTTCGCCGGTTC+AGG 0.350013 7_4:+60703925 Msa1168040:CDS
TTGGTTGGTGGAGCCTTTAC+CGG 0.366838 7_4:+60704579 Msa1168040:CDS
GCTGGAGCTGGTCCAACCAC+TGG 0.370487 7_4:+60704646 Msa1168040:CDS
ATTGCTATTGGTTTCATTGT+TGG 0.373919 7_4:+60704546 Msa1168040:CDS
CCCAACTACTGACTACTAGA+TGG 0.375801 7_4:+60704755 Msa1168040:exon
CTCAGCCAAACCAGCTTTCA+AGG 0.378565 7_4:-60703887 None:intergenic
AAATGGTGGCCGTTGATCTT+TGG 0.379333 7_4:+60704893 Msa1168040:three_prime_UTR
AAACCAGCTTTCAAGGTGTC+TGG 0.380207 7_4:-60703880 None:intergenic
AGTTGGAGTTGGACCAGCTT+TGG 0.387058 7_4:+60704431 Msa1168040:CDS
CTGCTGTTGTGAGCTGGAGC+TGG 0.387382 7_4:+60704634 Msa1168040:CDS
AGACACCTTGAAAGCTGGTT+TGG 0.388141 7_4:+60703882 Msa1168040:CDS
TCGGGCCTGCTGTTGTGAGC+TGG 0.388266 7_4:+60704628 Msa1168040:CDS
TTCATAATAGCTCCAAAATT+GGG 0.390433 7_4:-60703622 None:intergenic
GAATGACACTGCTGGGTTCA+TGG 0.394289 7_4:-60704607 None:intergenic
CCCATCTAGTAGTCAGTAGT+TGG 0.396152 7_4:-60704756 None:intergenic
TGCGATACCGGAACCTGAAC+CGG 0.401710 7_4:-60703938 None:intergenic
TTGCAGTCTGTTCCAGCATT+CGG 0.404116 7_4:+60704396 Msa1168040:intron
GTCAACCCCGCTGTCACCTT+CGG 0.406903 7_4:+60704081 Msa1168040:CDS
CCTCGTCTTTGTTACCGCTT+CGG 0.409303 7_4:+60704191 Msa1168040:CDS
CAGTAGTTGGGAGCTGCTCA+TGG 0.412257 7_4:-60704743 None:intergenic
TGAACCCAGCAGTGTCATTC+GGG 0.413725 7_4:+60704610 Msa1168040:CDS
AACCACTGGGTCTACTGGGC+TGG 0.414067 7_4:+60704660 Msa1168040:CDS
CTCTTTGTTGCTGTCTCCGT+TGG 0.414749 7_4:+60704036 Msa1168040:CDS
ATGAACCCAGCAGTGTCATT+CGG 0.415899 7_4:+60704609 Msa1168040:CDS
TTGTACATGCTTGGCCTAGC+AGG 0.416679 7_4:+60704958 Msa1168040:three_prime_UTR
TTTGGTTCACCGGTTGTAAC+GGG 0.422320 7_4:-60703679 None:intergenic
ACCTTCATCTTCGTCTTCGC+CGG 0.425837 7_4:+60703919 Msa1168040:CDS
GTCCAACCACTGGGTCTACT+GGG 0.451536 7_4:+60704656 Msa1168040:CDS
TAATATTGAAATATATCAAC+CGG 0.454291 7_4:+60703653 Msa1168040:five_prime_UTR
AATTGCTGGGCTTGTCTATG+AGG 0.457537 7_4:+60704701 Msa1168040:CDS
TGCTGGGTTCATGGATGCTC+CGG 0.461853 7_4:-60704598 None:intergenic
CTGGAGCTGGTCCAACCACT+GGG 0.462301 7_4:+60704647 Msa1168040:CDS
GACGGTGCTGCCACCCCTGC+CGG 0.462881 7_4:+60703979 Msa1168040:CDS
CACCCAGACACCTTGAAAGC+TGG 0.464496 7_4:+60703877 Msa1168040:CDS
ACCTTCGGTGCCTTCGTTGG+TGG 0.466591 7_4:+60704096 Msa1168040:CDS
CCCTCTGATAGTCCGAATGC+TGG 0.468725 7_4:-60704408 None:intergenic
AAGCTTGTTGTATGCGATAC+CGG 0.471031 7_4:-60703950 None:intergenic
GTCACCTTCGGTGCCTTCGT+TGG 0.471790 7_4:+60704093 Msa1168040:CDS
AACCGGTAACCCGTTACAAC+CGG 0.475571 7_4:+60703670 Msa1168040:five_prime_UTR
GAGGCAGAGATGAGACCGGC+AGG 0.478206 7_4:-60703994 None:intergenic
TCCGTTGGTGCTAACATCTC+CGG 0.479679 7_4:+60704051 Msa1168040:CDS
ACAATGAAACCAATAGCAAT+TGG 0.481653 7_4:-60704543 None:intergenic
TACATCATCGCTCAACTCCT+CGG 0.483632 7_4:+60704147 Msa1168040:CDS
GTTACCCTTCTTTGGGTCAA+CGG 0.486754 7_4:-60704505 None:intergenic
CTAGCAGGTTCTTAGTCAGC+AGG 0.496036 7_4:+60704973 Msa1168040:three_prime_UTR
GGCAGAGATGAGACCGGCAG+GGG 0.496508 7_4:-60703992 None:intergenic
GTTCATGGATGCTCCGGTAA+AGG 0.500331 7_4:-60704592 None:intergenic
AGAGATGAGACCGGCAGGGG+TGG 0.506184 7_4:-60703989 None:intergenic
GTTATAATTTCGGGTCTGCT+AGG 0.506973 7_4:+60705013 Msa1168040:three_prime_UTR
CCATCTAGTAGTCAGTAGTT+GGG 0.508206 7_4:-60704755 None:intergenic
CAGCTCCAGCTCACAACAGC+AGG 0.509110 7_4:-60704633 None:intergenic
CAACAAAGAGAGCGAATGCA+TGG 0.509622 7_4:-60704023 None:intergenic
GCAGGCCCGAATGACACTGC+TGG 0.511306 7_4:-60704615 None:intergenic
ACAATCTCCAACACCAAAGC+TGG 0.516165 7_4:-60704444 None:intergenic
GCAATTCCACCACCGATAAG+TGG 0.516249 7_4:-60704684 None:intergenic
TTATCGGTGGTGGAATTGCT+GGG 0.516651 7_4:+60704688 Msa1168040:CDS
GATTGTGATGACCTTTGGAT+TGG 0.517625 7_4:+60704461 Msa1168040:CDS
AGCGAATGCATGGGCGATGG+AGG 0.527289 7_4:-60704013 None:intergenic
AAGGCACCGAAGGTGACAGC+GGG 0.529721 7_4:-60704087 None:intergenic
GCTGGCCCACTTATCGGTGG+TGG 0.532535 7_4:+60704678 Msa1168040:CDS
TCTGGGTGAGTTGCCTCTTG+AGG 0.532672 7_4:-60703862 None:intergenic
AACCAGCTTTCAAGGTGTCT+GGG 0.534447 7_4:-60703879 None:intergenic
AGTAGTTGGGAGCTGCTCAT+GGG 0.538709 7_4:-60704742 None:intergenic
TACAGCCGTTGACCCAAAGA+AGG 0.539491 7_4:+60704500 Msa1168040:CDS
CTATCAGAGGGAGTTGGAGT+TGG 0.543695 7_4:+60704420 Msa1168040:CDS
AGTTGGACCAGCTTTGGTGT+TGG 0.548732 7_4:+60704437 Msa1168040:CDS
GTTACAACCGGTGAACCAAA+AGG 0.550412 7_4:+60703682 Msa1168040:five_prime_UTR
AAATTATAACATTGATTCAG+TGG 0.559617 7_4:-60705000 None:intergenic
ACCGGAGATGTTAGCACCAA+CGG 0.561542 7_4:-60704052 None:intergenic
GAGAGCGAATGCATGGGCGA+TGG 0.568019 7_4:-60704016 None:intergenic
TTCGGACTATCAGAGGGAGT+TGG 0.568192 7_4:+60704414 Msa1168040:CDS
GTTGATCTTTGGTTGTACGT+TGG 0.568559 7_4:+60704904 Msa1168040:three_prime_UTR
GATGGAGGCAGAGATGAGAC+CGG 0.570486 7_4:-60703998 None:intergenic
TGTAAACGATACCACGGAGG+AGG 0.570553 7_4:-60704128 None:intergenic
CAGGCCCGAATGACACTGCT+GGG 0.571592 7_4:-60704614 None:intergenic
AGCCCAGTAGACCCAGTGGT+TGG 0.571603 7_4:-60704658 None:intergenic
CCAACTACTGACTACTAGAT+GGG 0.574858 7_4:+60704756 Msa1168040:exon
GAGGAGGGCGGAAGCAACGA+TGG 0.575546 7_4:-60704172 None:intergenic
AGCGGGGTTGACATGTCCAC+CGG 0.585176 7_4:-60704070 None:intergenic
TTACTTATATGGAGAACGAC+CGG 0.590638 7_4:-60703705 None:intergenic
TCCAGCATTCGGACTATCAG+AGG 0.598958 7_4:+60704407 Msa1168040:CDS
ACCGGCGAAGACGAAGATGA+AGG 0.599996 7_4:-60703920 None:intergenic
AGGGGTGGCAGCACCGTCGT+TGG 0.600822 7_4:-60703974 None:intergenic
GACCCAAAGAAGGGTAACAT+TGG 0.607785 7_4:+60704510 Msa1168040:CDS
TATAAGTAAGACACAAGCAT+AGG 0.608314 7_4:+60703719 Msa1168040:five_prime_UTR
CAATTCCACCACCGATAAGT+GGG 0.611426 7_4:-60704683 None:intergenic
CTGCTGACTAAGAACCTGCT+AGG 0.612472 7_4:-60704972 None:intergenic
ACCACCAACGAAGGCACCGA+AGG 0.616088 7_4:-60704097 None:intergenic
TGCCTCTTGAGGAGTTCCTA+CGG 0.618685 7_4:-60703851 None:intergenic
AACAAAGAGAGCGAATGCAT+GGG 0.618823 7_4:-60704022 None:intergenic
GGTTAGTGATCATGATGGAA+TGG 0.621224 7_4:+60704925 Msa1168040:three_prime_UTR
AGGCAGAGATGAGACCGGCA+GGG 0.622500 7_4:-60703993 None:intergenic
TTATAACATTGATTCAGTGG+TGG 0.622918 7_4:-60704997 None:intergenic
AGCGGTAACAAAGACGAGGA+GGG 0.625271 7_4:-60704187 None:intergenic
CGGAAGCAACGATGGATCCG+AGG 0.625561 7_4:-60704164 None:intergenic
AACGTACAACCAAAGATCAA+CGG 0.631888 7_4:-60704902 None:intergenic
ATAATAGCTCCAAAATTGGG+AGG 0.634095 7_4:-60703619 None:intergenic
ACAGCCGTTGACCCAAAGAA+GGG 0.637474 7_4:+60704501 Msa1168040:CDS
CCGATCAGAAACATCGCCGT+AGG 0.641211 7_4:+60703835 Msa1168040:CDS
CACTGTGTACACCAATCCAA+AGG 0.645737 7_4:-60704472 None:intergenic
TGGGCTGGCCCACTTATCGG+TGG 0.647241 7_4:+60704675 Msa1168040:CDS
CCAGCATTCGGACTATCAGA+GGG 0.651221 7_4:+60704408 Msa1168040:CDS
AAGCGGTAACAAAGACGAGG+AGG 0.654245 7_4:-60704188 None:intergenic
CCTACGGCGATGTTTCTGAT+CGG 0.655680 7_4:-60703835 None:intergenic
GAAGGCACCGAAGGTGACAG+CGG 0.658097 7_4:-60704088 None:intergenic
GTAAACGATACCACGGAGGA+GGG 0.659135 7_4:-60704127 None:intergenic
CAACCGGTGAACCAAAAGGC+CGG 0.660337 7_4:+60703686 Msa1168040:five_prime_UTR
GTTGGTGCTAACATCTCCGG+TGG 0.661142 7_4:+60704054 Msa1168040:CDS
ACGTTGGTTAGTGATCATGA+TGG 0.661589 7_4:+60704920 Msa1168040:three_prime_UTR
GGCCAGCCCAGTAGACCCAG+TGG 0.666619 7_4:-60704662 None:intergenic
TACAACAAGCTTACCAACGA+CGG 0.666995 7_4:+60703961 Msa1168040:CDS
GGTAACAAAGACGAGGAGGG+CGG 0.672640 7_4:-60704184 None:intergenic
GGTAACATCACCCTCCTCCG+TGG 0.681289 7_4:+60704117 Msa1168040:CDS
CCGAAGCGGTAACAAAGACG+AGG 0.684473 7_4:-60704191 None:intergenic
GGTGATGTTACCACCAACGA+AGG 0.686744 7_4:-60704106 None:intergenic
CGAGAAGTATCTTACCGAAG+CGG 0.689056 7_4:-60704205 None:intergenic
CGATGATGTAAACGATACCA+CGG 0.702096 7_4:-60704134 None:intergenic
AGGCACCGAAGGTGACAGCG+GGG 0.759550 7_4:-60704086 None:intergenic
TGATGTAAACGATACCACGG+AGG 0.802444 7_4:-60704131 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTGAAATATATCAAC+CGG + chr7_4:60703653-60703672 Msa1168040:five_prime_UTR 15.0%
!!! TTTATCTTTTTTCTTTTGAA+GGG - chr7_4:60705072-60705091 None:intergenic 15.0%
!!! TTTTATCTTTTTTCTTTTGA+AGG - chr7_4:60705073-60705092 None:intergenic 15.0%
!! TAATATTGAAATATATCAAC+CGG + chr7_4:60703653-60703672 Msa1168040:five_prime_UTR 15.0%
!!! TTTATCTTTTTTCTTTTGAA+GGG - chr7_4:60705072-60705091 None:intergenic 15.0%
!!! TTTTATCTTTTTTCTTTTGA+AGG - chr7_4:60705073-60705092 None:intergenic 15.0%
!! AGAAAAGAAACAATGTTATT+TGG - chr7_4:60703572-60703591 None:intergenic 20.0%
!!! AAATAACATTGTTTCTTTTC+TGG + chr7_4:60703571-60703590 Msa1168040:five_prime_UTR 20.0%
!! ATGCAACTTTAATATTTCAT+CGG + chr7_4:60704315-60704334 Msa1168040:intron 20.0%
!!! TGTCCTTTTTTAATTATTGA+GGG + chr7_4:60704851-60704870 Msa1168040:three_prime_UTR 20.0%
!!! TAAATTATTTTGTACATGCT+TGG + chr7_4:60704949-60704968 Msa1168040:three_prime_UTR 20.0%
!!! AAATTATAACATTGATTCAG+TGG - chr7_4:60705003-60705022 None:intergenic 20.0%
!! CTGAATCAATGTTATAATTT+CGG + chr7_4:60705003-60705022 Msa1168040:three_prime_UTR 20.0%
!! TGAATCAATGTTATAATTTC+GGG + chr7_4:60705004-60705023 Msa1168040:three_prime_UTR 20.0%
!! AGAAAAGAAACAATGTTATT+TGG - chr7_4:60703572-60703591 None:intergenic 20.0%
!!! AAATAACATTGTTTCTTTTC+TGG + chr7_4:60703571-60703590 Msa1168040:five_prime_UTR 20.0%
!! ATGCAACTTTAATATTTCAT+CGG + chr7_4:60704315-60704334 Msa1168040:intron 20.0%
!!! TGTCCTTTTTTAATTATTGA+GGG + chr7_4:60704851-60704870 Msa1168040:three_prime_UTR 20.0%
!!! TAAATTATTTTGTACATGCT+TGG + chr7_4:60704949-60704968 Msa1168040:three_prime_UTR 20.0%
!!! AAATTATAACATTGATTCAG+TGG - chr7_4:60705003-60705022 None:intergenic 20.0%
!! CTGAATCAATGTTATAATTT+CGG + chr7_4:60705003-60705022 Msa1168040:three_prime_UTR 20.0%
!! TGAATCAATGTTATAATTTC+GGG + chr7_4:60705004-60705023 Msa1168040:three_prime_UTR 20.0%
! TTCATAATAGCTCCAAAATT+GGG - chr7_4:60703625-60703644 None:intergenic 25.0%
! TTTCATAATAGCTCCAAAAT+TGG - chr7_4:60703626-60703645 None:intergenic 25.0%
! AATTAAACTCTTGCATGTTA+GGG - chr7_4:60704292-60704311 None:intergenic 25.0%
! AAATTAAACTCTTGCATGTT+AGG - chr7_4:60704293-60704312 None:intergenic 25.0%
! ATTAAAAAAGGACACAACAA+AGG - chr7_4:60704845-60704864 None:intergenic 25.0%
!!! GTGTCCTTTTTTAATTATTG+AGG + chr7_4:60704850-60704869 Msa1168040:three_prime_UTR 25.0%
! CAACCCTCAATAATTAAAAA+AGG - chr7_4:60704857-60704876 None:intergenic 25.0%
!! GTTTCTTTTGTGTTGAAAAA+TGG + chr7_4:60704876-60704895 Msa1168040:three_prime_UTR 25.0%
!! AAGAAACAATGTTATTTGGT+GGG - chr7_4:60703568-60703587 None:intergenic 25.0%
!! AAAGAAACAATGTTATTTGG+TGG - chr7_4:60703569-60703588 None:intergenic 25.0%
! TTCATAATAGCTCCAAAATT+GGG - chr7_4:60703625-60703644 None:intergenic 25.0%
! TTTCATAATAGCTCCAAAAT+TGG - chr7_4:60703626-60703645 None:intergenic 25.0%
! AATTAAACTCTTGCATGTTA+GGG - chr7_4:60704292-60704311 None:intergenic 25.0%
! AAATTAAACTCTTGCATGTT+AGG - chr7_4:60704293-60704312 None:intergenic 25.0%
! ATTAAAAAAGGACACAACAA+AGG - chr7_4:60704845-60704864 None:intergenic 25.0%
!!! GTGTCCTTTTTTAATTATTG+AGG + chr7_4:60704850-60704869 Msa1168040:three_prime_UTR 25.0%
! CAACCCTCAATAATTAAAAA+AGG - chr7_4:60704857-60704876 None:intergenic 25.0%
!! GTTTCTTTTGTGTTGAAAAA+TGG + chr7_4:60704876-60704895 Msa1168040:three_prime_UTR 25.0%
ATGCTTGTGTCTTACTTATA+TGG - chr7_4:60703719-60703738 None:intergenic 30.0%
TATAAGTAAGACACAAGCAT+AGG + chr7_4:60703719-60703738 Msa1168040:five_prime_UTR 30.0%
ATTATTGCACCAATTGCTAT+TGG + chr7_4:60704534-60704553 Msa1168040:CDS 30.0%
ACAATGAAACCAATAGCAAT+TGG - chr7_4:60704546-60704565 None:intergenic 30.0%
!! ATTGCTATTGGTTTCATTGT+TGG + chr7_4:60704546-60704565 Msa1168040:CDS 30.0%
! TCTTTTGTGTTGAAAAATGG+TGG + chr7_4:60704879-60704898 Msa1168040:three_prime_UTR 30.0%
!! TTATAACATTGATTCAGTGG+TGG - chr7_4:60705000-60705019 None:intergenic 30.0%
ATGCTTGTGTCTTACTTATA+TGG - chr7_4:60703719-60703738 None:intergenic 30.0%
TATAAGTAAGACACAAGCAT+AGG + chr7_4:60703719-60703738 Msa1168040:five_prime_UTR 30.0%
ATTATTGCACCAATTGCTAT+TGG + chr7_4:60704534-60704553 Msa1168040:CDS 30.0%
ACAATGAAACCAATAGCAAT+TGG - chr7_4:60704546-60704565 None:intergenic 30.0%
!! ATTGCTATTGGTTTCATTGT+TGG + chr7_4:60704546-60704565 Msa1168040:CDS 30.0%
! TCTTTTGTGTTGAAAAATGG+TGG + chr7_4:60704879-60704898 Msa1168040:three_prime_UTR 30.0%
!! TTATAACATTGATTCAGTGG+TGG - chr7_4:60705000-60705019 None:intergenic 30.0%
!!! ACATTGTTTCTTTTCTGGCT+TGG + chr7_4:60703576-60703595 Msa1168040:five_prime_UTR 35.0%
!!! ATGTTGATTCCTCCCAATTT+TGG + chr7_4:60703610-60703629 Msa1168040:five_prime_UTR 35.0%
ATAATAGCTCCAAAATTGGG+AGG - chr7_4:60703622-60703641 None:intergenic 35.0%
TTACTTATATGGAGAACGAC+CGG - chr7_4:60703708-60703727 None:intergenic 35.0%
TTCCAATGTTACCCTTCTTT+GGG - chr7_4:60704515-60704534 None:intergenic 35.0%
ATTCCAATGTTACCCTTCTT+TGG - chr7_4:60704516-60704535 None:intergenic 35.0%
!!! CATTGTTGGTGCTAACATTT+TGG + chr7_4:60704560-60704579 Msa1168040:CDS 35.0%
AACGTACAACCAAAGATCAA+CGG - chr7_4:60704905-60704924 None:intergenic 35.0%
!!! ACATTGTTTCTTTTCTGGCT+TGG + chr7_4:60703576-60703595 Msa1168040:five_prime_UTR 35.0%
!!! ATGTTGATTCCTCCCAATTT+TGG + chr7_4:60703610-60703629 Msa1168040:five_prime_UTR 35.0%
ATAATAGCTCCAAAATTGGG+AGG - chr7_4:60703622-60703641 None:intergenic 35.0%
TTACTTATATGGAGAACGAC+CGG - chr7_4:60703708-60703727 None:intergenic 35.0%
TTCCAATGTTACCCTTCTTT+GGG - chr7_4:60704515-60704534 None:intergenic 35.0%
ATTCCAATGTTACCCTTCTT+TGG - chr7_4:60704516-60704535 None:intergenic 35.0%
!!! CATTGTTGGTGCTAACATTT+TGG + chr7_4:60704560-60704579 Msa1168040:CDS 35.0%
AACGTACAACCAAAGATCAA+CGG - chr7_4:60704905-60704924 None:intergenic 35.0%
!!! TTTTGGTTCACCGGTTGTAA+CGG - chr7_4:60703683-60703702 None:intergenic 40.0%
!! AAGCTTGTTGTATGCGATAC+CGG - chr7_4:60703953-60703972 None:intergenic 40.0%
TACAACAAGCTTACCAACGA+CGG + chr7_4:60703961-60703980 Msa1168040:CDS 40.0%
AACAAAGAGAGCGAATGCAT+GGG - chr7_4:60704025-60704044 None:intergenic 40.0%
CGATGATGTAAACGATACCA+CGG - chr7_4:60704137-60704156 None:intergenic 40.0%
TTGGAGATTGTGATGACCTT+TGG + chr7_4:60704456-60704475 Msa1168040:CDS 40.0%
GATTGTGATGACCTTTGGAT+TGG + chr7_4:60704461-60704480 Msa1168040:CDS 40.0%
!!! GTTGGTGCTAACATTTTGGT+TGG + chr7_4:60704564-60704583 Msa1168040:CDS 40.0%
CCATCTAGTAGTCAGTAGTT+GGG - chr7_4:60704758-60704777 None:intergenic 40.0%
! CCAACTACTGACTACTAGAT+GGG + chr7_4:60704756-60704775 Msa1168040:exon 40.0%
GTTGATCTTTGGTTGTACGT+TGG + chr7_4:60704904-60704923 Msa1168040:three_prime_UTR 40.0%
! ACGTTGGTTAGTGATCATGA+TGG + chr7_4:60704920-60704939 Msa1168040:three_prime_UTR 40.0%
! GGTTAGTGATCATGATGGAA+TGG + chr7_4:60704925-60704944 Msa1168040:three_prime_UTR 40.0%
! GTTATAATTTCGGGTCTGCT+AGG + chr7_4:60705013-60705032 Msa1168040:three_prime_UTR 40.0%
!!! TTTTGGTTCACCGGTTGTAA+CGG - chr7_4:60703683-60703702 None:intergenic 40.0%
!! AAGCTTGTTGTATGCGATAC+CGG - chr7_4:60703953-60703972 None:intergenic 40.0%
TACAACAAGCTTACCAACGA+CGG + chr7_4:60703961-60703980 Msa1168040:CDS 40.0%
AACAAAGAGAGCGAATGCAT+GGG - chr7_4:60704025-60704044 None:intergenic 40.0%
CGATGATGTAAACGATACCA+CGG - chr7_4:60704137-60704156 None:intergenic 40.0%
TTGGAGATTGTGATGACCTT+TGG + chr7_4:60704456-60704475 Msa1168040:CDS 40.0%
GATTGTGATGACCTTTGGAT+TGG + chr7_4:60704461-60704480 Msa1168040:CDS 40.0%
!!! GTTGGTGCTAACATTTTGGT+TGG + chr7_4:60704564-60704583 Msa1168040:CDS 40.0%
CCATCTAGTAGTCAGTAGTT+GGG - chr7_4:60704758-60704777 None:intergenic 40.0%
! CCAACTACTGACTACTAGAT+GGG + chr7_4:60704756-60704775 Msa1168040:exon 40.0%
GTTGATCTTTGGTTGTACGT+TGG + chr7_4:60704904-60704923 Msa1168040:three_prime_UTR 40.0%
! ACGTTGGTTAGTGATCATGA+TGG + chr7_4:60704920-60704939 Msa1168040:three_prime_UTR 40.0%
! GGTTAGTGATCATGATGGAA+TGG + chr7_4:60704925-60704944 Msa1168040:three_prime_UTR 40.0%
! GTTATAATTTCGGGTCTGCT+AGG + chr7_4:60705013-60705032 Msa1168040:three_prime_UTR 40.0%
! TTTGGTTCACCGGTTGTAAC+GGG - chr7_4:60703682-60703701 None:intergenic 45.0%
GTTACAACCGGTGAACCAAA+AGG + chr7_4:60703682-60703701 Msa1168040:five_prime_UTR 45.0%
!! GTTACTGTGAAAGCGCTTTC+TGG - chr7_4:60703770-60703789 None:intergenic 45.0%
! AACCAGCTTTCAAGGTGTCT+GGG - chr7_4:60703882-60703901 None:intergenic 45.0%
! AAACCAGCTTTCAAGGTGTC+TGG - chr7_4:60703883-60703902 None:intergenic 45.0%
AGACACCTTGAAAGCTGGTT+TGG + chr7_4:60703882-60703901 Msa1168040:CDS 45.0%
CAACAAAGAGAGCGAATGCA+TGG - chr7_4:60704026-60704045 None:intergenic 45.0%
TGATGTAAACGATACCACGG+AGG - chr7_4:60704134-60704153 None:intergenic 45.0%
TACATCATCGCTCAACTCCT+CGG + chr7_4:60704147-60704166 Msa1168040:CDS 45.0%
!! CGAGAAGTATCTTACCGAAG+CGG - chr7_4:60704208-60704227 None:intergenic 45.0%
CGCTTCGGTAAGATACTTCT+CGG + chr7_4:60704206-60704225 Msa1168040:intron 45.0%
TTGCAGTCTGTTCCAGCATT+CGG + chr7_4:60704396-60704415 Msa1168040:intron 45.0%
ACAATCTCCAACACCAAAGC+TGG - chr7_4:60704447-60704466 None:intergenic 45.0%
CACTGTGTACACCAATCCAA+AGG - chr7_4:60704475-60704494 None:intergenic 45.0%
GTTACCCTTCTTTGGGTCAA+CGG - chr7_4:60704508-60704527 None:intergenic 45.0%
GACCCAAAGAAGGGTAACAT+TGG + chr7_4:60704510-60704529 Msa1168040:CDS 45.0%
!!! GGTGCTAACATTTTGGTTGG+TGG + chr7_4:60704567-60704586 Msa1168040:CDS 45.0%
! ATGAACCCAGCAGTGTCATT+CGG + chr7_4:60704609-60704628 Msa1168040:CDS 45.0%
CAATTCCACCACCGATAAGT+GGG - chr7_4:60704686-60704705 None:intergenic 45.0%
!! TTATCGGTGGTGGAATTGCT+GGG + chr7_4:60704688-60704707 Msa1168040:CDS 45.0%
AATTGCTGGGCTTGTCTATG+AGG + chr7_4:60704701-60704720 Msa1168040:CDS 45.0%
! CCCAACTACTGACTACTAGA+TGG + chr7_4:60704755-60704774 Msa1168040:exon 45.0%
CCCATCTAGTAGTCAGTAGT+TGG - chr7_4:60704759-60704778 None:intergenic 45.0%
AAATGGTGGCCGTTGATCTT+TGG + chr7_4:60704893-60704912 Msa1168040:three_prime_UTR 45.0%
! TTTGGTTCACCGGTTGTAAC+GGG - chr7_4:60703682-60703701 None:intergenic 45.0%
GTTACAACCGGTGAACCAAA+AGG + chr7_4:60703682-60703701 Msa1168040:five_prime_UTR 45.0%
!! GTTACTGTGAAAGCGCTTTC+TGG - chr7_4:60703770-60703789 None:intergenic 45.0%
! AACCAGCTTTCAAGGTGTCT+GGG - chr7_4:60703882-60703901 None:intergenic 45.0%
! AAACCAGCTTTCAAGGTGTC+TGG - chr7_4:60703883-60703902 None:intergenic 45.0%
AGACACCTTGAAAGCTGGTT+TGG + chr7_4:60703882-60703901 Msa1168040:CDS 45.0%
CAACAAAGAGAGCGAATGCA+TGG - chr7_4:60704026-60704045 None:intergenic 45.0%
TGATGTAAACGATACCACGG+AGG - chr7_4:60704134-60704153 None:intergenic 45.0%
TACATCATCGCTCAACTCCT+CGG + chr7_4:60704147-60704166 Msa1168040:CDS 45.0%
!! CGAGAAGTATCTTACCGAAG+CGG - chr7_4:60704208-60704227 None:intergenic 45.0%
CGCTTCGGTAAGATACTTCT+CGG + chr7_4:60704206-60704225 Msa1168040:intron 45.0%
TTGCAGTCTGTTCCAGCATT+CGG + chr7_4:60704396-60704415 Msa1168040:intron 45.0%
ACAATCTCCAACACCAAAGC+TGG - chr7_4:60704447-60704466 None:intergenic 45.0%
CACTGTGTACACCAATCCAA+AGG - chr7_4:60704475-60704494 None:intergenic 45.0%
GTTACCCTTCTTTGGGTCAA+CGG - chr7_4:60704508-60704527 None:intergenic 45.0%
GACCCAAAGAAGGGTAACAT+TGG + chr7_4:60704510-60704529 Msa1168040:CDS 45.0%
!!! GGTGCTAACATTTTGGTTGG+TGG + chr7_4:60704567-60704586 Msa1168040:CDS 45.0%
! ATGAACCCAGCAGTGTCATT+CGG + chr7_4:60704609-60704628 Msa1168040:CDS 45.0%
CAATTCCACCACCGATAAGT+GGG - chr7_4:60704686-60704705 None:intergenic 45.0%
!! TTATCGGTGGTGGAATTGCT+GGG + chr7_4:60704688-60704707 Msa1168040:CDS 45.0%
AATTGCTGGGCTTGTCTATG+AGG + chr7_4:60704701-60704720 Msa1168040:CDS 45.0%
! CCCAACTACTGACTACTAGA+TGG + chr7_4:60704755-60704774 Msa1168040:exon 45.0%
CCCATCTAGTAGTCAGTAGT+TGG - chr7_4:60704759-60704778 None:intergenic 45.0%
AAATGGTGGCCGTTGATCTT+TGG + chr7_4:60704893-60704912 Msa1168040:three_prime_UTR 45.0%
AACCGGTAACCCGTTACAAC+CGG + chr7_4:60703670-60703689 Msa1168040:five_prime_UTR 50.0%
! CCTACGGCGATGTTTCTGAT+CGG - chr7_4:60703838-60703857 None:intergenic 50.0%
TGCCTCTTGAGGAGTTCCTA+CGG - chr7_4:60703854-60703873 None:intergenic 50.0%
CTCAGCCAAACCAGCTTTCA+AGG - chr7_4:60703890-60703909 None:intergenic 50.0%
ACCTTCATCTTCGTCTTCGC+CGG + chr7_4:60703919-60703938 Msa1168040:CDS 50.0%
CTCTTTGTTGCTGTCTCCGT+TGG + chr7_4:60704036-60704055 Msa1168040:CDS 50.0%
!! TCCGTTGGTGCTAACATCTC+CGG + chr7_4:60704051-60704070 Msa1168040:CDS 50.0%
ACCGGAGATGTTAGCACCAA+CGG - chr7_4:60704055-60704074 None:intergenic 50.0%
GGTGATGTTACCACCAACGA+AGG - chr7_4:60704109-60704128 None:intergenic 50.0%
GTAAACGATACCACGGAGGA+GGG - chr7_4:60704130-60704149 None:intergenic 50.0%
TGTAAACGATACCACGGAGG+AGG - chr7_4:60704131-60704150 None:intergenic 50.0%
AGCGGTAACAAAGACGAGGA+GGG - chr7_4:60704190-60704209 None:intergenic 50.0%
AAGCGGTAACAAAGACGAGG+AGG - chr7_4:60704191-60704210 None:intergenic 50.0%
CCTCGTCTTTGTTACCGCTT+CGG + chr7_4:60704191-60704210 Msa1168040:CDS 50.0%
TCCAGCATTCGGACTATCAG+AGG + chr7_4:60704407-60704426 Msa1168040:CDS 50.0%
CCAGCATTCGGACTATCAGA+GGG + chr7_4:60704408-60704427 Msa1168040:CDS 50.0%
TTCGGACTATCAGAGGGAGT+TGG + chr7_4:60704414-60704433 Msa1168040:CDS 50.0%
CTATCAGAGGGAGTTGGAGT+TGG + chr7_4:60704420-60704439 Msa1168040:CDS 50.0%
AGTTGGAGTTGGACCAGCTT+TGG + chr7_4:60704431-60704450 Msa1168040:CDS 50.0%
! AGTTGGACCAGCTTTGGTGT+TGG + chr7_4:60704437-60704456 Msa1168040:CDS 50.0%
TACAGCCGTTGACCCAAAGA+AGG + chr7_4:60704500-60704519 Msa1168040:CDS 50.0%
ACAGCCGTTGACCCAAAGAA+GGG + chr7_4:60704501-60704520 Msa1168040:CDS 50.0%
!! TTGGTTGGTGGAGCCTTTAC+CGG + chr7_4:60704579-60704598 Msa1168040:CDS 50.0%
GTTCATGGATGCTCCGGTAA+AGG - chr7_4:60704595-60704614 None:intergenic 50.0%
GAATGACACTGCTGGGTTCA+TGG - chr7_4:60704610-60704629 None:intergenic 50.0%
! TGAACCCAGCAGTGTCATTC+GGG + chr7_4:60704610-60704629 Msa1168040:CDS 50.0%
GCAATTCCACCACCGATAAG+TGG - chr7_4:60704687-60704706 None:intergenic 50.0%
!! CTTATCGGTGGTGGAATTGC+TGG + chr7_4:60704687-60704706 Msa1168040:CDS 50.0%
AGTAGTTGGGAGCTGCTCAT+GGG - chr7_4:60704745-60704764 None:intergenic 50.0%
TTGTACATGCTTGGCCTAGC+AGG + chr7_4:60704958-60704977 Msa1168040:three_prime_UTR 50.0%
! CTGCTGACTAAGAACCTGCT+AGG - chr7_4:60704975-60704994 None:intergenic 50.0%
CTAGCAGGTTCTTAGTCAGC+AGG + chr7_4:60704973-60704992 Msa1168040:three_prime_UTR 50.0%
AACCGGTAACCCGTTACAAC+CGG + chr7_4:60703670-60703689 Msa1168040:five_prime_UTR 50.0%
! CCTACGGCGATGTTTCTGAT+CGG - chr7_4:60703838-60703857 None:intergenic 50.0%
TGCCTCTTGAGGAGTTCCTA+CGG - chr7_4:60703854-60703873 None:intergenic 50.0%
CTCAGCCAAACCAGCTTTCA+AGG - chr7_4:60703890-60703909 None:intergenic 50.0%
ACCTTCATCTTCGTCTTCGC+CGG + chr7_4:60703919-60703938 Msa1168040:CDS 50.0%
CTCTTTGTTGCTGTCTCCGT+TGG + chr7_4:60704036-60704055 Msa1168040:CDS 50.0%
!! TCCGTTGGTGCTAACATCTC+CGG + chr7_4:60704051-60704070 Msa1168040:CDS 50.0%
ACCGGAGATGTTAGCACCAA+CGG - chr7_4:60704055-60704074 None:intergenic 50.0%
GGTGATGTTACCACCAACGA+AGG - chr7_4:60704109-60704128 None:intergenic 50.0%
GTAAACGATACCACGGAGGA+GGG - chr7_4:60704130-60704149 None:intergenic 50.0%
TGTAAACGATACCACGGAGG+AGG - chr7_4:60704131-60704150 None:intergenic 50.0%
AGCGGTAACAAAGACGAGGA+GGG - chr7_4:60704190-60704209 None:intergenic 50.0%
AAGCGGTAACAAAGACGAGG+AGG - chr7_4:60704191-60704210 None:intergenic 50.0%
CCTCGTCTTTGTTACCGCTT+CGG + chr7_4:60704191-60704210 Msa1168040:CDS 50.0%
TCCAGCATTCGGACTATCAG+AGG + chr7_4:60704407-60704426 Msa1168040:CDS 50.0%
CCAGCATTCGGACTATCAGA+GGG + chr7_4:60704408-60704427 Msa1168040:CDS 50.0%
TTCGGACTATCAGAGGGAGT+TGG + chr7_4:60704414-60704433 Msa1168040:CDS 50.0%
CTATCAGAGGGAGTTGGAGT+TGG + chr7_4:60704420-60704439 Msa1168040:CDS 50.0%
AGTTGGAGTTGGACCAGCTT+TGG + chr7_4:60704431-60704450 Msa1168040:CDS 50.0%
! AGTTGGACCAGCTTTGGTGT+TGG + chr7_4:60704437-60704456 Msa1168040:CDS 50.0%
TACAGCCGTTGACCCAAAGA+AGG + chr7_4:60704500-60704519 Msa1168040:CDS 50.0%
ACAGCCGTTGACCCAAAGAA+GGG + chr7_4:60704501-60704520 Msa1168040:CDS 50.0%
!! TTGGTTGGTGGAGCCTTTAC+CGG + chr7_4:60704579-60704598 Msa1168040:CDS 50.0%
GTTCATGGATGCTCCGGTAA+AGG - chr7_4:60704595-60704614 None:intergenic 50.0%
GAATGACACTGCTGGGTTCA+TGG - chr7_4:60704610-60704629 None:intergenic 50.0%
! TGAACCCAGCAGTGTCATTC+GGG + chr7_4:60704610-60704629 Msa1168040:CDS 50.0%
GCAATTCCACCACCGATAAG+TGG - chr7_4:60704687-60704706 None:intergenic 50.0%
!! CTTATCGGTGGTGGAATTGC+TGG + chr7_4:60704687-60704706 Msa1168040:CDS 50.0%
AGTAGTTGGGAGCTGCTCAT+GGG - chr7_4:60704745-60704764 None:intergenic 50.0%
TTGTACATGCTTGGCCTAGC+AGG + chr7_4:60704958-60704977 Msa1168040:three_prime_UTR 50.0%
! CTGCTGACTAAGAACCTGCT+AGG - chr7_4:60704975-60704994 None:intergenic 50.0%
CTAGCAGGTTCTTAGTCAGC+AGG + chr7_4:60704973-60704992 Msa1168040:three_prime_UTR 50.0%
!! CACCGGTTGTAACGGGTTAC+CGG - chr7_4:60703675-60703694 None:intergenic 55.0%
CAACCGGTGAACCAAAAGGC+CGG + chr7_4:60703686-60703705 Msa1168040:five_prime_UTR 55.0%
! ATGGAGAACGACCGGCCTTT+TGG - chr7_4:60703700-60703719 None:intergenic 55.0%
CCGATCAGAAACATCGCCGT+AGG + chr7_4:60703835-60703854 Msa1168040:CDS 55.0%
TCTGGGTGAGTTGCCTCTTG+AGG - chr7_4:60703865-60703884 None:intergenic 55.0%
CACCCAGACACCTTGAAAGC+TGG + chr7_4:60703877-60703896 Msa1168040:CDS 55.0%
ACCGGCGAAGACGAAGATGA+AGG - chr7_4:60703923-60703942 None:intergenic 55.0%
!! ATCTTCGTCTTCGCCGGTTC+AGG + chr7_4:60703925-60703944 Msa1168040:CDS 55.0%
TGCGATACCGGAACCTGAAC+CGG - chr7_4:60703941-60703960 None:intergenic 55.0%
GATGGAGGCAGAGATGAGAC+CGG - chr7_4:60704001-60704020 None:intergenic 55.0%
!! GTTGGTGCTAACATCTCCGG+TGG + chr7_4:60704054-60704073 Msa1168040:CDS 55.0%
GGTAACAAAGACGAGGAGGG+CGG - chr7_4:60704187-60704206 None:intergenic 55.0%
CCGAAGCGGTAACAAAGACG+AGG - chr7_4:60704194-60704213 None:intergenic 55.0%
CCCTCTGATAGTCCGAATGC+TGG - chr7_4:60704411-60704430 None:intergenic 55.0%
TGCTGGGTTCATGGATGCTC+CGG - chr7_4:60704601-60704620 None:intergenic 55.0%
GTCCAACCACTGGGTCTACT+GGG + chr7_4:60704656-60704675 Msa1168040:CDS 55.0%
!! TACTGGGCTGGCCCACTTAT+CGG + chr7_4:60704672-60704691 Msa1168040:CDS 55.0%
CAGTAGTTGGGAGCTGCTCA+TGG - chr7_4:60704746-60704765 None:intergenic 55.0%
!! CACCGGTTGTAACGGGTTAC+CGG - chr7_4:60703675-60703694 None:intergenic 55.0%
CAACCGGTGAACCAAAAGGC+CGG + chr7_4:60703686-60703705 Msa1168040:five_prime_UTR 55.0%
! ATGGAGAACGACCGGCCTTT+TGG - chr7_4:60703700-60703719 None:intergenic 55.0%
CCGATCAGAAACATCGCCGT+AGG + chr7_4:60703835-60703854 Msa1168040:CDS 55.0%
TCTGGGTGAGTTGCCTCTTG+AGG - chr7_4:60703865-60703884 None:intergenic 55.0%
CACCCAGACACCTTGAAAGC+TGG + chr7_4:60703877-60703896 Msa1168040:CDS 55.0%
ACCGGCGAAGACGAAGATGA+AGG - chr7_4:60703923-60703942 None:intergenic 55.0%
!! ATCTTCGTCTTCGCCGGTTC+AGG + chr7_4:60703925-60703944 Msa1168040:CDS 55.0%
TGCGATACCGGAACCTGAAC+CGG - chr7_4:60703941-60703960 None:intergenic 55.0%
GATGGAGGCAGAGATGAGAC+CGG - chr7_4:60704001-60704020 None:intergenic 55.0%
!! GTTGGTGCTAACATCTCCGG+TGG + chr7_4:60704054-60704073 Msa1168040:CDS 55.0%
GGTAACAAAGACGAGGAGGG+CGG - chr7_4:60704187-60704206 None:intergenic 55.0%
CCGAAGCGGTAACAAAGACG+AGG - chr7_4:60704194-60704213 None:intergenic 55.0%
CCCTCTGATAGTCCGAATGC+TGG - chr7_4:60704411-60704430 None:intergenic 55.0%
TGCTGGGTTCATGGATGCTC+CGG - chr7_4:60704601-60704620 None:intergenic 55.0%
GTCCAACCACTGGGTCTACT+GGG + chr7_4:60704656-60704675 Msa1168040:CDS 55.0%
!! TACTGGGCTGGCCCACTTAT+CGG + chr7_4:60704672-60704691 Msa1168040:CDS 55.0%
CAGTAGTTGGGAGCTGCTCA+TGG - chr7_4:60704746-60704765 None:intergenic 55.0%
!!! CGACCGGCCTTTTGGTTCAC+CGG - chr7_4:60703692-60703711 None:intergenic 60.0%
CGCCGTAGGAACTCCTCAAG+AGG + chr7_4:60703849-60703868 Msa1168040:CDS 60.0%
!! GTCTTCGCCGGTTCAGGTTC+CGG + chr7_4:60703931-60703950 Msa1168040:CDS 60.0%
AGGCAGAGATGAGACCGGCA+GGG - chr7_4:60703996-60704015 None:intergenic 60.0%
AGCGAATGCATGGGCGATGG+AGG - chr7_4:60704016-60704035 None:intergenic 60.0%
GAGAGCGAATGCATGGGCGA+TGG - chr7_4:60704019-60704038 None:intergenic 60.0%
AGCGGGGTTGACATGTCCAC+CGG - chr7_4:60704073-60704092 None:intergenic 60.0%
GTCAACCCCGCTGTCACCTT+CGG + chr7_4:60704081-60704100 Msa1168040:CDS 60.0%
!! AAGGCACCGAAGGTGACAGC+GGG - chr7_4:60704090-60704109 None:intergenic 60.0%
!! GAAGGCACCGAAGGTGACAG+CGG - chr7_4:60704091-60704110 None:intergenic 60.0%
!! GTCACCTTCGGTGCCTTCGT+TGG + chr7_4:60704093-60704112 Msa1168040:CDS 60.0%
!! ACCTTCGGTGCCTTCGTTGG+TGG + chr7_4:60704096-60704115 Msa1168040:CDS 60.0%
!! ACCACCAACGAAGGCACCGA+AGG - chr7_4:60704100-60704119 None:intergenic 60.0%
GGTAACATCACCCTCCTCCG+TGG + chr7_4:60704117-60704136 Msa1168040:CDS 60.0%
CGGAAGCAACGATGGATCCG+AGG - chr7_4:60704167-60704186 None:intergenic 60.0%
CAGGCCCGAATGACACTGCT+GGG - chr7_4:60704617-60704636 None:intergenic 60.0%
CAGCTCCAGCTCACAACAGC+AGG - chr7_4:60704636-60704655 None:intergenic 60.0%
CTGCTGTTGTGAGCTGGAGC+TGG + chr7_4:60704634-60704653 Msa1168040:CDS 60.0%
CTGGAGCTGGTCCAACCACT+GGG + chr7_4:60704647-60704666 Msa1168040:CDS 60.0%
GGTCCAACCACTGGGTCTAC+TGG + chr7_4:60704655-60704674 Msa1168040:CDS 60.0%
AGCCCAGTAGACCCAGTGGT+TGG - chr7_4:60704661-60704680 None:intergenic 60.0%
AACCACTGGGTCTACTGGGC+TGG + chr7_4:60704660-60704679 Msa1168040:CDS 60.0%
!!! CGACCGGCCTTTTGGTTCAC+CGG - chr7_4:60703692-60703711 None:intergenic 60.0%
CGCCGTAGGAACTCCTCAAG+AGG + chr7_4:60703849-60703868 Msa1168040:CDS 60.0%
!! GTCTTCGCCGGTTCAGGTTC+CGG + chr7_4:60703931-60703950 Msa1168040:CDS 60.0%
AGGCAGAGATGAGACCGGCA+GGG - chr7_4:60703996-60704015 None:intergenic 60.0%
AGCGAATGCATGGGCGATGG+AGG - chr7_4:60704016-60704035 None:intergenic 60.0%
GAGAGCGAATGCATGGGCGA+TGG - chr7_4:60704019-60704038 None:intergenic 60.0%
AGCGGGGTTGACATGTCCAC+CGG - chr7_4:60704073-60704092 None:intergenic 60.0%
GTCAACCCCGCTGTCACCTT+CGG + chr7_4:60704081-60704100 Msa1168040:CDS 60.0%
!! AAGGCACCGAAGGTGACAGC+GGG - chr7_4:60704090-60704109 None:intergenic 60.0%
!! GAAGGCACCGAAGGTGACAG+CGG - chr7_4:60704091-60704110 None:intergenic 60.0%
!! GTCACCTTCGGTGCCTTCGT+TGG + chr7_4:60704093-60704112 Msa1168040:CDS 60.0%
!! ACCTTCGGTGCCTTCGTTGG+TGG + chr7_4:60704096-60704115 Msa1168040:CDS 60.0%
!! ACCACCAACGAAGGCACCGA+AGG - chr7_4:60704100-60704119 None:intergenic 60.0%
GGTAACATCACCCTCCTCCG+TGG + chr7_4:60704117-60704136 Msa1168040:CDS 60.0%
CGGAAGCAACGATGGATCCG+AGG - chr7_4:60704167-60704186 None:intergenic 60.0%
CAGGCCCGAATGACACTGCT+GGG - chr7_4:60704617-60704636 None:intergenic 60.0%
CAGCTCCAGCTCACAACAGC+AGG - chr7_4:60704636-60704655 None:intergenic 60.0%
CTGCTGTTGTGAGCTGGAGC+TGG + chr7_4:60704634-60704653 Msa1168040:CDS 60.0%
CTGGAGCTGGTCCAACCACT+GGG + chr7_4:60704647-60704666 Msa1168040:CDS 60.0%
GGTCCAACCACTGGGTCTAC+TGG + chr7_4:60704655-60704674 Msa1168040:CDS 60.0%
AGCCCAGTAGACCCAGTGGT+TGG - chr7_4:60704661-60704680 None:intergenic 60.0%
AACCACTGGGTCTACTGGGC+TGG + chr7_4:60704660-60704679 Msa1168040:CDS 60.0%
AGAGATGAGACCGGCAGGGG+TGG - chr7_4:60703992-60704011 None:intergenic 65.0%
GGCAGAGATGAGACCGGCAG+GGG - chr7_4:60703995-60704014 None:intergenic 65.0%
GAGGCAGAGATGAGACCGGC+AGG - chr7_4:60703997-60704016 None:intergenic 65.0%
!! AGGCACCGAAGGTGACAGCG+GGG - chr7_4:60704089-60704108 None:intergenic 65.0%
GAGGAGGGCGGAAGCAACGA+TGG - chr7_4:60704175-60704194 None:intergenic 65.0%
GCAGGCCCGAATGACACTGC+TGG - chr7_4:60704618-60704637 None:intergenic 65.0%
TCGGGCCTGCTGTTGTGAGC+TGG + chr7_4:60704628-60704647 Msa1168040:CDS 65.0%
GCTGGAGCTGGTCCAACCAC+TGG + chr7_4:60704646-60704665 Msa1168040:CDS 65.0%
!! TGGGCTGGCCCACTTATCGG+TGG + chr7_4:60704675-60704694 Msa1168040:CDS 65.0%
GCTGGCCCACTTATCGGTGG+TGG + chr7_4:60704678-60704697 Msa1168040:CDS 65.0%
AGAGATGAGACCGGCAGGGG+TGG - chr7_4:60703992-60704011 None:intergenic 65.0%
GGCAGAGATGAGACCGGCAG+GGG - chr7_4:60703995-60704014 None:intergenic 65.0%
GAGGCAGAGATGAGACCGGC+AGG - chr7_4:60703997-60704016 None:intergenic 65.0%
!! AGGCACCGAAGGTGACAGCG+GGG - chr7_4:60704089-60704108 None:intergenic 65.0%
GAGGAGGGCGGAAGCAACGA+TGG - chr7_4:60704175-60704194 None:intergenic 65.0%
GCAGGCCCGAATGACACTGC+TGG - chr7_4:60704618-60704637 None:intergenic 65.0%
TCGGGCCTGCTGTTGTGAGC+TGG + chr7_4:60704628-60704647 Msa1168040:CDS 65.0%
GCTGGAGCTGGTCCAACCAC+TGG + chr7_4:60704646-60704665 Msa1168040:CDS 65.0%
!! TGGGCTGGCCCACTTATCGG+TGG + chr7_4:60704675-60704694 Msa1168040:CDS 65.0%
GCTGGCCCACTTATCGGTGG+TGG + chr7_4:60704678-60704697 Msa1168040:CDS 65.0%
AGGGGTGGCAGCACCGTCGT+TGG - chr7_4:60703977-60703996 None:intergenic 70.0%
GGCCAGCCCAGTAGACCCAG+TGG - chr7_4:60704665-60704684 None:intergenic 70.0%
AGGGGTGGCAGCACCGTCGT+TGG - chr7_4:60703977-60703996 None:intergenic 70.0%
GGCCAGCCCAGTAGACCCAG+TGG - chr7_4:60704665-60704684 None:intergenic 70.0%
!! GACGGTGCTGCCACCCCTGC+CGG + chr7_4:60703979-60703998 Msa1168040:CDS 75.0%
!! GACGGTGCTGCCACCCCTGC+CGG + chr7_4:60703979-60703998 Msa1168040:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 60703567 60705142 60703567 ID=Msa1168040;Name=Msa1168040
chr7_4 mRNA 60703567 60705142 60703567 ID=Msa1168040-mRNA-1;Parent=Msa1168040;Name=Msa1168040-mRNA-1;_AED=0.06;_eAED=0.06;_QI=265|1|1|1|1|1|2|369|250
chr7_4 exon 60703567 60704212 60703567 ID=Msa1168040-mRNA-1:exon:19033;Parent=Msa1168040-mRNA-1
chr7_4 exon 60704402 60705142 60704402 ID=Msa1168040-mRNA-1:exon:19034;Parent=Msa1168040-mRNA-1
chr7_4 five_prime_UTR 60703567 60703831 60703567 ID=Msa1168040-mRNA-1:five_prime_utr;Parent=Msa1168040-mRNA-1
chr7_4 CDS 60703832 60704212 60703832 ID=Msa1168040-mRNA-1:cds;Parent=Msa1168040-mRNA-1
chr7_4 CDS 60704402 60704773 60704402 ID=Msa1168040-mRNA-1:cds;Parent=Msa1168040-mRNA-1
chr7_4 three_prime_UTR 60704774 60705142 60704774 ID=Msa1168040-mRNA-1:three_prime_utr;Parent=Msa1168040-mRNA-1
Gene Sequence

>Msa1168040

ATGCCGATCAGAAACATCGCCGTAGGAACTCCTCAAGAGGCAACTCACCCAGACACCTTGAAAGCTGGTTTGGCTGAGTTCATCTCAACCTTCATCTTCGTCTTCGCCGGTTCAGGTTCCGGTATCGCATACAACAAGCTTACCAACGACGGTGCTGCCACCCCTGCCGGTCTCATCTCTGCCTCCATCGCCCATGCATTCGCTCTCTTTGTTGCTGTCTCCGTTGGTGCTAACATCTCCGGTGGACATGTCAACCCCGCTGTCACCTTCGGTGCCTTCGTTGGTGGTAACATCACCCTCCTCCGTGGTATCGTTTACATCATCGCTCAACTCCTCGGATCCATCGTTGCTTCCGCCCTCCTCGTCTTTGTTACCGCTTCGTCTGTTCCAGCATTCGGACTATCAGAGGGAGTTGGAGTTGGACCAGCTTTGGTGTTGGAGATTGTGATGACCTTTGGATTGGTGTACACAGTGTATGCTACAGCCGTTGACCCAAAGAAGGGTAACATTGGAATTATTGCACCAATTGCTATTGGTTTCATTGTTGGTGCTAACATTTTGGTTGGTGGAGCCTTTACCGGAGCATCCATGAACCCAGCAGTGTCATTCGGGCCTGCTGTTGTGAGCTGGAGCTGGTCCAACCACTGGGTCTACTGGGCTGGCCCACTTATCGGTGGTGGAATTGCTGGGCTTGTCTATGAGGTTCTTTTCATCAACAGCACCCATGAGCAGCTCCCAACTACTGACTACTAG

Protein sequence

>Msa1168040

MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTASSVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWVYWAGPLIGGGIAGLVYEVLFINSTHEQLPTTDY*