AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1246530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1246530 MtrunA17_Chr8g0361111 97.984 248 2 1 1 245 1 248 1.82e-180 495
Msa1246530 MtrunA17_Chr2g0323291 60.094 213 68 3 23 235 6 201 7.71e-87 257
Msa1246530 MtrunA17_Chr2g0318741 44.025 159 54 4 23 181 18 141 1.68e-34 121
Msa1246530 MtrunA17_Chr1g0194801 30.114 176 97 5 42 214 6 158 5.94e-19 80.9
Msa1246530 MtrunA17_Chr1g0176321 27.807 187 108 6 41 216 2 172 8.63e-19 80.9
Msa1246530 MtrunA17_Chr5g0427291 31.250 176 95 7 46 212 12 170 6.65e-15 70.5
Msa1246530 MtrunA17_Chr4g0032261 32.955 176 90 7 42 212 5 157 9.96e-15 69.7
Msa1246530 MtrunA17_Chr1g0195661 29.714 175 96 6 46 217 16 166 1.06e-14 69.7
Msa1246530 MtrunA17_Chr7g0240701 28.249 177 97 5 42 212 5 157 2.55e-14 68.9
Msa1246530 MtrunA17_Chr5g0433951 31.765 170 96 6 44 212 7 157 5.49e-14 67.8
Msa1246530 MtrunA17_Chr2g0294421 30.058 173 99 6 42 212 5 157 6.94e-14 67.4
Msa1246530 MtrunA17_Chr1g0176311 25.414 181 114 5 41 216 21 185 1.14e-12 64.7
Msa1246530 MtrunA17_Chr4g0001641 42.857 63 32 2 150 212 7 65 8.83e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1246530 AT1G11360.2 61.207 232 67 4 1 232 1 209 2.19e-95 280
Msa1246530 AT1G11360.1 61.207 232 67 4 1 232 1 209 2.19e-95 280
Msa1246530 AT1G11360.4 61.207 232 67 4 1 232 1 209 2.19e-95 280
Msa1246530 AT1G11360.3 61.207 232 67 4 1 232 1 209 2.19e-95 280
Msa1246530 AT5G54430.2 67.290 214 47 5 39 246 45 241 8.50e-82 245
Msa1246530 AT5G54430.5 67.290 214 47 5 39 246 45 241 8.50e-82 245
Msa1246530 AT4G27320.1 68.599 207 44 3 31 227 34 229 1.30e-81 245
Msa1246530 AT4G27320.2 68.599 207 44 3 31 227 34 229 1.33e-81 245
Msa1246530 AT5G54430.3 67.136 213 47 5 39 245 45 240 1.06e-80 243
Msa1246530 AT5G54430.6 67.136 213 47 5 39 245 45 240 1.06e-80 243
Msa1246530 AT5G54430.1 67.136 213 47 5 39 245 45 240 1.32e-80 242
Msa1246530 AT5G54430.4 67.136 213 47 5 39 245 45 240 1.32e-80 242
Msa1246530 AT3G21210.1 44.538 238 67 7 22 246 8 193 2.62e-38 142
Msa1246530 AT3G17020.1 30.769 182 87 5 42 212 7 160 7.04e-16 73.2
Msa1246530 AT3G11930.2 28.261 184 115 6 36 216 28 197 7.21e-16 73.9
Msa1246530 AT3G11930.1 28.272 191 105 8 36 216 28 196 9.72e-16 73.6
Msa1246530 AT3G03270.2 31.667 180 93 5 39 212 2 157 1.93e-15 72.0
Msa1246530 AT3G11930.4 27.807 187 102 7 42 216 33 198 3.39e-15 72.4
Msa1246530 AT3G58450.1 26.738 187 105 4 44 220 32 196 7.85e-14 68.6
Msa1246530 AT3G53990.1 25.862 174 105 4 42 212 5 157 4.03e-13 65.9
Msa1246530 AT1G09740.2 28.723 188 110 6 37 219 3 171 4.71e-12 63.2
Msa1246530 AT1G09740.1 28.723 188 110 6 37 219 3 171 4.71e-12 63.2
Msa1246530 AT3G11930.3 25.121 207 118 6 36 216 28 223 6.23e-12 63.5

Find 84 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCGTATGCGGTGTTATT+GGG 0.183511 8_2:-38187549 None:intergenic
GGATTCGTATGCGGTGTTAT+TGG 0.193524 8_2:-38187550 None:intergenic
AAGGGTGGTGGATTCGGATT+TGG 0.212027 8_2:-38187587 None:intergenic
TGGTCTTAGTGCTGTGATTA+TGG 0.223499 8_2:+38188049 Msa1246530:CDS
ATGGCTTCTTCTTCTGAGTT+TGG 0.269141 8_2:-38187834 None:intergenic
GTTATTGGTGGCGATGTTTA+TGG 0.271233 8_2:-38187853 None:intergenic
AGGGTGGTGGATTCGGATTT+GGG 0.271885 8_2:-38187586 None:intergenic
ACGTCCTCTTCGGCGCTGAT+TGG 0.283937 8_2:+38187781 Msa1246530:CDS
TATCATGATCCTTCACAATA+TGG 0.299081 8_2:-38187992 None:intergenic
CGTCCTCTTCGGCGCTGATT+GGG 0.327604 8_2:+38187782 Msa1246530:CDS
GGTCTTAGTGCTGTGATTAT+GGG 0.345114 8_2:+38188050 Msa1246530:CDS
GGGAGGAAGGGTGGTGGATT+CGG 0.347707 8_2:-38187593 None:intergenic
TTTACGACGGGCGCCGGCGG+TGG 0.353192 8_2:-38187646 None:intergenic
GAGTTGGTGTTGCGGCGGAC+TGG 0.353376 8_2:-38187623 None:intergenic
GGCGAGGGGAGGAAGGGTGG+TGG 0.353858 8_2:-38187599 None:intergenic
TTCTTATGTTCATGCGCAAC+AGG 0.354187 8_2:-38188251 None:intergenic
TGAGGCTGTTGTTGCTGTTA+AGG 0.360083 8_2:+38188199 Msa1246530:CDS
GGAAGAGATCTCGGTGTTAT+TGG 0.376841 8_2:-38187868 None:intergenic
TTCACAATATGGATCTTATA+CGG 0.381641 8_2:-38187981 None:intergenic
GACTGGTGGCGAGGGGAGGA+AGG 0.397572 8_2:-38187606 None:intergenic
GGGTGGTGGATTCGGATTTG+GGG 0.397867 8_2:-38187585 None:intergenic
ATTATGGGAAGCCGGGGATT+CGG 0.415537 8_2:+38188065 Msa1246530:CDS
TGCTGTGATTATGGGAAGCC+GGG 0.416921 8_2:+38188058 Msa1246530:CDS
CGGGCGCCGGCGGTGGGAGT+TGG 0.422938 8_2:-38187639 None:intergenic
GCATGAACATAAGAAAGGTT+AGG 0.425323 8_2:+38188259 Msa1246530:CDS
TGAGTTTGGATCGGTGTTGA+TGG 0.428135 8_2:-38187820 None:intergenic
GGTGGCGAGGGGAGGAAGGG+TGG 0.432256 8_2:-38187602 None:intergenic
GCCGGCGCCCGTCGTAAAAT+CGG 0.442139 8_2:+38187651 Msa1246530:CDS
TTCTTCTTCTGAGTTTGGAT+CGG 0.445240 8_2:-38187829 None:intergenic
GGTGGTGGATTCGGATTTGG+GGG 0.450244 8_2:-38187584 None:intergenic
TTGCGGCGGACTGGTGGCGA+GGG 0.451016 8_2:-38187614 None:intergenic
GATTCGGCGCGGTGCGTCGA+GGG 0.455895 8_2:+38188081 Msa1246530:CDS
CGAGGGAGTGATGGAAAGCT+TGG 0.459523 8_2:+38188098 Msa1246530:CDS
CATGAACATAAGAAAGGTTA+GGG 0.460852 8_2:+38188260 Msa1246530:CDS
TCTTCTTCTAGCTTCCGTTT+CGG 0.464225 8_2:-38187894 None:intergenic
GGATAACGAACAACAACAAC+AGG 0.467960 8_2:-38188158 None:intergenic
GTGCTGTGATTATGGGAAGC+CGG 0.485598 8_2:+38188057 Msa1246530:CDS
TCAGCAGCATCTTTATCATC+AGG 0.485969 8_2:-38188179 None:intergenic
GAGGAGGATGACAGCATCAC+CGG 0.487963 8_2:-38187742 None:intergenic
TGTCTTGAAGTTGAGCGTCT+TGG 0.488142 8_2:+38188029 Msa1246530:CDS
GGCGGACTGGTGGCGAGGGG+AGG 0.493374 8_2:-38187610 None:intergenic
GGATTCGGCGCGGTGCGTCG+AGG 0.512761 8_2:+38188080 Msa1246530:CDS
ATTCGTATGCGGTGTTATTG+GGG 0.516187 8_2:-38187548 None:intergenic
GTCCTCTTCGGCGCTGATTG+GGG 0.529444 8_2:+38187783 Msa1246530:CDS
GTTGCGGCGGACTGGTGGCG+AGG 0.531453 8_2:-38187615 None:intergenic
ACTGGTGGCGAGGGGAGGAA+GGG 0.536304 8_2:-38187605 None:intergenic
GCAACACCAACTCCCACCGC+CGG 0.537020 8_2:+38187633 Msa1246530:CDS
CGCCGAAGAGGACGTCGGTA+GGG 0.540325 8_2:-38187773 None:intergenic
GAGGGAGTGATGGAAAGCTT+GGG 0.540363 8_2:+38188099 Msa1246530:CDS
TGTGAAGGATCATGATATGA+AGG 0.542050 8_2:+38187998 Msa1246530:CDS
TTCTAGCTTCCGTTTCGGCG+TGG 0.549588 8_2:-38187889 None:intergenic
TTGGTGTTGCGGCGGACTGG+TGG 0.551212 8_2:-38187620 None:intergenic
CGGTAGGGCTGACGTGGAGG+AGG 0.552310 8_2:-38187758 None:intergenic
AGAGATCTCGGTGTTATTGG+TGG 0.561192 8_2:-38187865 None:intergenic
TGCTGTTAAGGAAGGTGATG+AGG 0.561629 8_2:+38188211 Msa1246530:CDS
GGACGTCGGTAGGGCTGACG+TGG 0.563280 8_2:-38187764 None:intergenic
TTTCGGCGTGGAAGAGATCT+CGG 0.567577 8_2:-38187877 None:intergenic
GGCGGTGGGAGTTGGTGTTG+CGG 0.569635 8_2:-38187631 None:intergenic
AGATCTCTTCCACGCCGAAA+CGG 0.575017 8_2:+38187880 Msa1246530:CDS
GGGTCGGATGTAGTGTTGTA+CGG 0.581567 8_2:-38187721 None:intergenic
GCGCCGAAGAGGACGTCGGT+AGG 0.584829 8_2:-38187774 None:intergenic
GCTGTTAAGGAAGGTGATGA+GGG 0.586963 8_2:+38188212 Msa1246530:CDS
GTTGCGCATGAACATAAGAA+AGG 0.592839 8_2:+38188254 Msa1246530:CDS
GCGGTGCGTCGAGGGAGTGA+TGG 0.598507 8_2:+38188089 Msa1246530:CDS
AGGAGGATGACAGCATCACC+GGG 0.600265 8_2:-38187741 None:intergenic
GCTCTCGTCGGAGAGGTCAA+CGG 0.611136 8_2:-38187679 None:intergenic
AACCCCAATCAGCGCCGAAG+AGG 0.613753 8_2:-38187785 None:intergenic
GGAATCTGAGCTTCTTTGAG+CGG 0.614313 8_2:-38187960 None:intergenic
GGTGTTGATGGAGAGATCGA+TGG 0.618449 8_2:-38187808 None:intergenic
CGTCGGTAGGGCTGACGTGG+AGG 0.619707 8_2:-38187761 None:intergenic
TGCGGCGGACTGGTGGCGAG+GGG 0.622611 8_2:-38187613 None:intergenic
GCTGTTGTTGCTGTTAAGGA+AGG 0.624018 8_2:+38188203 Msa1246530:CDS
GGTGGGAGTTGGTGTTGCGG+CGG 0.628633 8_2:-38187628 None:intergenic
TGATGATAAAGATGCTGCTG+AGG 0.632652 8_2:+38188181 Msa1246530:CDS
GGATGACAGCATCACCGGGT+CGG 0.651732 8_2:-38187737 None:intergenic
GTATAAGATCCATATTGTGA+AGG 0.654145 8_2:+38187983 Msa1246530:CDS
GGGAAGCCGGGGATTCGGCG+CGG 0.657257 8_2:+38188070 Msa1246530:CDS
AGGATCATGATATGAAGGAA+CGG 0.667933 8_2:+38188003 Msa1246530:CDS
TTGTGGGTCGGATTCGTATG+CGG 0.682438 8_2:-38187559 None:intergenic
CGTACGCGCTCTCGTCGGAG+AGG 0.686951 8_2:-38187686 None:intergenic
GTACAACACTACATCCGACC+CGG 0.689396 8_2:+38187723 Msa1246530:CDS
GCTGTGATTATGGGAAGCCG+GGG 0.691579 8_2:+38188059 Msa1246530:CDS
ATCAGCGCCGAAGAGGACGT+CGG 0.716462 8_2:-38187778 None:intergenic
AAGATCAGCAGACTTCGTCG+CGG 0.796336 8_2:-38187931 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TTCACAATATGGATCTTATA+CGG - chr8_2:38187984-38188003 None:intergenic 25.0%
GTATAAGATCCATATTGTGA+AGG + chr8_2:38187983-38188002 Msa1246530:CDS 30.0%
TATCATGATCCTTCACAATA+TGG - chr8_2:38187995-38188014 None:intergenic 30.0%
TTCTTCTTCTGAGTTTGGAT+CGG - chr8_2:38187832-38187851 None:intergenic 35.0%
TGTGAAGGATCATGATATGA+AGG + chr8_2:38187998-38188017 Msa1246530:CDS 35.0%
AGGATCATGATATGAAGGAA+CGG + chr8_2:38188003-38188022 Msa1246530:CDS 35.0%
!! ATTCGTATGCGGTGTTATTG+GGG - chr8_2:38187551-38187570 None:intergenic 40.0%
!! GATTCGTATGCGGTGTTATT+GGG - chr8_2:38187552-38187571 None:intergenic 40.0%
ATGGCTTCTTCTTCTGAGTT+TGG - chr8_2:38187837-38187856 None:intergenic 40.0%
!! GTTATTGGTGGCGATGTTTA+TGG - chr8_2:38187856-38187875 None:intergenic 40.0%
!! TCTTCTTCTAGCTTCCGTTT+CGG - chr8_2:38187897-38187916 None:intergenic 40.0%
! TGGTCTTAGTGCTGTGATTA+TGG + chr8_2:38188049-38188068 Msa1246530:CDS 40.0%
GGTCTTAGTGCTGTGATTAT+GGG + chr8_2:38188050-38188069 Msa1246530:CDS 40.0%
GGATAACGAACAACAACAAC+AGG - chr8_2:38188161-38188180 None:intergenic 40.0%
TCAGCAGCATCTTTATCATC+AGG - chr8_2:38188182-38188201 None:intergenic 40.0%
TGATGATAAAGATGCTGCTG+AGG + chr8_2:38188181-38188200 Msa1246530:CDS 40.0%
TTCTTATGTTCATGCGCAAC+AGG - chr8_2:38188254-38188273 None:intergenic 40.0%
GTTGCGCATGAACATAAGAA+AGG + chr8_2:38188254-38188273 Msa1246530:CDS 40.0%
!! GGATTCGTATGCGGTGTTAT+TGG - chr8_2:38187553-38187572 None:intergenic 45.0%
!! TGAGTTTGGATCGGTGTTGA+TGG - chr8_2:38187823-38187842 None:intergenic 45.0%
!! AGAGATCTCGGTGTTATTGG+TGG - chr8_2:38187868-38187887 None:intergenic 45.0%
!! GGAAGAGATCTCGGTGTTAT+TGG - chr8_2:38187871-38187890 None:intergenic 45.0%
GGAATCTGAGCTTCTTTGAG+CGG - chr8_2:38187963-38187982 None:intergenic 45.0%
TGTCTTGAAGTTGAGCGTCT+TGG + chr8_2:38188029-38188048 Msa1246530:CDS 45.0%
! TGAGGCTGTTGTTGCTGTTA+AGG + chr8_2:38188199-38188218 Msa1246530:CDS 45.0%
! GCTGTTGTTGCTGTTAAGGA+AGG + chr8_2:38188203-38188222 Msa1246530:CDS 45.0%
TGCTGTTAAGGAAGGTGATG+AGG + chr8_2:38188211-38188230 Msa1246530:CDS 45.0%
GCTGTTAAGGAAGGTGATGA+GGG + chr8_2:38188212-38188231 Msa1246530:CDS 45.0%
TTGTGGGTCGGATTCGTATG+CGG - chr8_2:38187562-38187581 None:intergenic 50.0%
TTCGGATTTGGGGGAGTTGT+GGG - chr8_2:38187578-38187597 None:intergenic 50.0%
ATTCGGATTTGGGGGAGTTG+TGG - chr8_2:38187579-38187598 None:intergenic 50.0%
!! AGGGTGGTGGATTCGGATTT+GGG - chr8_2:38187589-38187608 None:intergenic 50.0%
!! AAGGGTGGTGGATTCGGATT+TGG - chr8_2:38187590-38187609 None:intergenic 50.0%
GGGTCGGATGTAGTGTTGTA+CGG - chr8_2:38187724-38187743 None:intergenic 50.0%
GTACAACACTACATCCGACC+CGG + chr8_2:38187723-38187742 Msa1246530:CDS 50.0%
!! GGTGTTGATGGAGAGATCGA+TGG - chr8_2:38187811-38187830 None:intergenic 50.0%
TTTCGGCGTGGAAGAGATCT+CGG - chr8_2:38187880-38187899 None:intergenic 50.0%
AGATCTCTTCCACGCCGAAA+CGG + chr8_2:38187880-38187899 Msa1246530:CDS 50.0%
AAGATCAGCAGACTTCGTCG+CGG - chr8_2:38187934-38187953 None:intergenic 50.0%
GTGCTGTGATTATGGGAAGC+CGG + chr8_2:38188057-38188076 Msa1246530:CDS 50.0%
TGCTGTGATTATGGGAAGCC+GGG + chr8_2:38188058-38188077 Msa1246530:CDS 50.0%
ATTATGGGAAGCCGGGGATT+CGG + chr8_2:38188065-38188084 Msa1246530:CDS 50.0%
! GAGGGAGTGATGGAAAGCTT+GGG + chr8_2:38188099-38188118 Msa1246530:CDS 50.0%
GATTTGGGGGAGTTGTGGGT+CGG - chr8_2:38187574-38187593 None:intergenic 55.0%
!! GGTGGTGGATTCGGATTTGG+GGG - chr8_2:38187587-38187606 None:intergenic 55.0%
!! GGGTGGTGGATTCGGATTTG+GGG - chr8_2:38187588-38187607 None:intergenic 55.0%
AGGAGGATGACAGCATCACC+GGG - chr8_2:38187744-38187763 None:intergenic 55.0%
GAGGAGGATGACAGCATCAC+CGG - chr8_2:38187745-38187764 None:intergenic 55.0%
!! TTCTAGCTTCCGTTTCGGCG+TGG - chr8_2:38187892-38187911 None:intergenic 55.0%
GCTGTGATTATGGGAAGCCG+GGG + chr8_2:38188059-38188078 Msa1246530:CDS 55.0%
! CGAGGGAGTGATGGAAAGCT+TGG + chr8_2:38188098-38188117 Msa1246530:CDS 55.0%
!! GGGAGGAAGGGTGGTGGATT+CGG - chr8_2:38187596-38187615 None:intergenic 60.0%
!!! GGCGACGCCGATTTTACGAC+GGG - chr8_2:38187661-38187680 None:intergenic 60.0%
!!! CGGCGACGCCGATTTTACGA+CGG - chr8_2:38187662-38187681 None:intergenic 60.0%
GCTCTCGTCGGAGAGGTCAA+CGG - chr8_2:38187682-38187701 None:intergenic 60.0%
TACAGCGTACGCGCTCTCGT+CGG - chr8_2:38187694-38187713 None:intergenic 60.0%
GGATGACAGCATCACCGGGT+CGG - chr8_2:38187740-38187759 None:intergenic 60.0%
AGCCCTACCGACGTCCTCTT+CGG + chr8_2:38187771-38187790 Msa1246530:CDS 60.0%
! ATCAGCGCCGAAGAGGACGT+CGG - chr8_2:38187781-38187800 None:intergenic 60.0%
!! ACGTCCTCTTCGGCGCTGAT+TGG + chr8_2:38187781-38187800 Msa1246530:CDS 60.0%
!! CGTCCTCTTCGGCGCTGATT+GGG + chr8_2:38187782-38187801 Msa1246530:CDS 60.0%
!! GTCCTCTTCGGCGCTGATTG+GGG + chr8_2:38187783-38187802 Msa1246530:CDS 60.0%
! AACCCCAATCAGCGCCGAAG+AGG - chr8_2:38187788-38187807 None:intergenic 60.0%
! ACTGGTGGCGAGGGGAGGAA+GGG - chr8_2:38187608-38187627 None:intergenic 65.0%
!! TTGGTGTTGCGGCGGACTGG+TGG - chr8_2:38187623-38187642 None:intergenic 65.0%
!! GAGTTGGTGTTGCGGCGGAC+TGG - chr8_2:38187626-38187645 None:intergenic 65.0%
!! GGTGGGAGTTGGTGTTGCGG+CGG - chr8_2:38187631-38187650 None:intergenic 65.0%
!! GGCGGTGGGAGTTGGTGTTG+CGG - chr8_2:38187634-38187653 None:intergenic 65.0%
GCAACACCAACTCCCACCGC+CGG + chr8_2:38187633-38187652 Msa1246530:CDS 65.0%
!!! GATTTTACGACGGGCGCCGG+CGG - chr8_2:38187652-38187671 None:intergenic 65.0%
GCCGGCGCCCGTCGTAAAAT+CGG + chr8_2:38187651-38187670 Msa1246530:CDS 65.0%
!! GCCGATTTTACGACGGGCGC+CGG - chr8_2:38187655-38187674 None:intergenic 65.0%
AGAGCGCGTACGCTGTACGC+TGG + chr8_2:38187697-38187716 Msa1246530:CDS 65.0%
GAGCGCGTACGCTGTACGCT+GGG + chr8_2:38187698-38187717 Msa1246530:CDS 65.0%
CGCCGAAGAGGACGTCGGTA+GGG - chr8_2:38187776-38187795 None:intergenic 65.0%
! GACTGGTGGCGAGGGGAGGA+AGG - chr8_2:38187609-38187628 None:intergenic 70.0%
!! TTGCGGCGGACTGGTGGCGA+GGG - chr8_2:38187617-38187636 None:intergenic 70.0%
CGTACGCGCTCTCGTCGGAG+AGG - chr8_2:38187689-38187708 None:intergenic 70.0%
CGGTAGGGCTGACGTGGAGG+AGG - chr8_2:38187761-38187780 None:intergenic 70.0%
CGTCGGTAGGGCTGACGTGG+AGG - chr8_2:38187764-38187783 None:intergenic 70.0%
GGACGTCGGTAGGGCTGACG+TGG - chr8_2:38187767-38187786 None:intergenic 70.0%
GCGCCGAAGAGGACGTCGGT+AGG - chr8_2:38187777-38187796 None:intergenic 70.0%
GATTCGGCGCGGTGCGTCGA+GGG + chr8_2:38188081-38188100 Msa1246530:CDS 70.0%
GCGGTGCGTCGAGGGAGTGA+TGG + chr8_2:38188089-38188108 Msa1246530:CDS 70.0%
GGCGAGGGGAGGAAGGGTGG+TGG - chr8_2:38187602-38187621 None:intergenic 75.0%
GGTGGCGAGGGGAGGAAGGG+TGG - chr8_2:38187605-38187624 None:intergenic 75.0%
!! TGCGGCGGACTGGTGGCGAG+GGG - chr8_2:38187616-38187635 None:intergenic 75.0%
!! GTTGCGGCGGACTGGTGGCG+AGG - chr8_2:38187618-38187637 None:intergenic 75.0%
!! TTACGACGGGCGCCGGCGGT+GGG - chr8_2:38187648-38187667 None:intergenic 75.0%
!! TTTACGACGGGCGCCGGCGG+TGG - chr8_2:38187649-38187668 None:intergenic 75.0%
GGGAAGCCGGGGATTCGGCG+CGG + chr8_2:38188070-38188089 Msa1246530:CDS 75.0%
GACGCACCGCGCCGAATCCC+CGG - chr8_2:38188079-38188098 None:intergenic 75.0%
GGATTCGGCGCGGTGCGTCG+AGG + chr8_2:38188080-38188099 Msa1246530:CDS 75.0%
!!! GGCGGACTGGTGGCGAGGGG+AGG - chr8_2:38187613-38187632 None:intergenic 80.0%
!!! CGGGCGCCGGCGGTGGGAGT+TGG - chr8_2:38187642-38187661 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 38187540 38188280 38187540 ID=Msa1246530;Name=Msa1246530
chr8_2 mRNA 38187540 38188280 38187540 ID=Msa1246530-mRNA-1;Parent=Msa1246530;Name=Msa1246530-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|-1|0|1|-1|1|1|0|246
chr8_2 exon 38187540 38188280 38187540 ID=Msa1246530-mRNA-1:exon:11923;Parent=Msa1246530-mRNA-1
chr8_2 CDS 38187540 38188280 38187540 ID=Msa1246530-mRNA-1:cds;Parent=Msa1246530-mRNA-1
Gene Sequence

>Msa1246530

ATGCAGAACCCCAATAACACCGCATACGAATCCGACCCACAACTCCCCCAAATCCGAATCCACCACCCTTCCTCCCCTCGCCACCAGTCCGCCGCAACACCAACTCCCACCGCCGGCGCCCGTCGTAAAATCGGCGTCGCCGTTGACCTCTCCGACGAGAGCGCGTACGCTGTACGCTGGGCCGTACAACACTACATCCGACCCGGTGATGCTGTCATCCTCCTCCACGTCAGCCCTACCGACGTCCTCTTCGGCGCTGATTGGGGTTCCATCGATCTCTCCATCAACACCGATCCAAACTCAGAAGAAGAAGCCATAAACATCGCCACCAATAACACCGAGATCTCTTCCACGCCGAAACGGAAGCTAGAAGAAGACTACGACGCTTTCACCGCGACGAAGTCTGCTGATCTTGCAAAACCGCTCAAAGAAGCTCAGATTCCGTATAAGATCCATATTGTGAAGGATCATGATATGAAGGAACGGTTATGTCTTGAAGTTGAGCGTCTTGGTCTTAGTGCTGTGATTATGGGAAGCCGGGGATTCGGCGCGGTGCGTCGAGGGAGTGATGGAAAGCTTGGGAGTGTTAGTGATTACTGTGTTCATCATTGTGTTTGTCCTGTTGTTGTTGTTCGTTATCCTGATGATAAAGATGCTGCTGAGGCTGTTGTTGCTGTTAAGGAAGGTGATGAGGGTGAAGCTGTTATTAAGCCTGTTGCGCATGAACATAAGAAAGGTTAG

Protein sequence

>Msa1246530

MQNPNNTAYESDPQLPQIRIHHPSSPRHQSAATPTPTAGARRKIGVAVDLSDESAYAVRWAVQHYIRPGDAVILLHVSPTDVLFGADWGSIDLSINTDPNSEEEAINIATNNTEISSTPKRKLEEDYDAFTATKSADLAKPLKEAQIPYKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGFGAVRRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDAAEAVVAVKEGDEGEAVIKPVAHEHKKG*