Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434900 | RDX75818.1 | 67.846 | 622 | 107 | 4 | 1 | 530 | 23 | 643 | 0.0 | 816 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434900 | sp|Q9FUW6|BETV6_BETPN | 74.545 | 275 | 70 | 0 | 256 | 530 | 34 | 308 | 1.31e-148 | 431 |
| Msa0434900 | sp|Q9FUW6|BETV6_BETPN | 68.954 | 306 | 47 | 1 | 1 | 258 | 1 | 306 | 8.97e-140 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434900 | A0A498J6Q1 | 66.090 | 578 | 110 | 3 | 1 | 530 | 1 | 540 | 0.0 | 738 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044540 | Msa0434900 | 0.800988 | 1.112947e-48 | -8.615850e-47 |
| Msa0384190 | Msa0434900 | 0.957415 | 2.867002e-115 | -8.615850e-47 |
| Msa0434900 | Msa0478840 | 0.956608 | 1.974142e-114 | -8.615850e-47 |
| Msa0434900 | Msa0709800 | 0.995460 | 1.742142e-216 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434900 | MtrunA17_Chr3g0141691 | 94.545 | 275 | 15 | 0 | 256 | 530 | 34 | 308 | 0.0 | 535 |
| Msa0434900 | MtrunA17_Chr3g0141691 | 65.033 | 306 | 59 | 1 | 1 | 258 | 1 | 306 | 8.22e-131 | 383 |
| Msa0434900 | MtrunA17_Chr3g0141681 | 80.195 | 308 | 11 | 1 | 1 | 258 | 1 | 308 | 5.75e-165 | 470 |
| Msa0434900 | MtrunA17_Chr3g0141681 | 74.368 | 277 | 69 | 1 | 256 | 530 | 34 | 310 | 6.67e-146 | 421 |
| Msa0434900 | MtrunA17_Chr3g0144701 | 67.636 | 275 | 89 | 0 | 256 | 530 | 38 | 312 | 1.46e-137 | 400 |
| Msa0434900 | MtrunA17_Chr3g0144701 | 59.934 | 302 | 73 | 1 | 5 | 258 | 9 | 310 | 1.57e-121 | 359 |
| Msa0434900 | MtrunA17_Chr5g0404471 | 65.818 | 275 | 94 | 0 | 256 | 530 | 35 | 309 | 1.10e-128 | 377 |
| Msa0434900 | MtrunA17_Chr5g0404471 | 58.224 | 304 | 79 | 1 | 2 | 257 | 3 | 306 | 2.31e-115 | 343 |
| Msa0434900 | MtrunA17_Chr4g0035131 | 59.636 | 275 | 111 | 0 | 256 | 530 | 74 | 348 | 4.72e-113 | 340 |
| Msa0434900 | MtrunA17_Chr4g0035131 | 52.303 | 304 | 97 | 1 | 3 | 258 | 43 | 346 | 2.51e-102 | 312 |
| Msa0434900 | MtrunA17_Chr4g0035111 | 56.250 | 272 | 119 | 0 | 256 | 527 | 36 | 307 | 3.15e-109 | 328 |
| Msa0434900 | MtrunA17_Chr4g0035111 | 50.000 | 306 | 105 | 1 | 1 | 258 | 3 | 308 | 8.66e-102 | 309 |
| Msa0434900 | MtrunA17_Chr5g0404511 | 56.458 | 271 | 116 | 2 | 261 | 530 | 49 | 318 | 6.62e-101 | 306 |
| Msa0434900 | MtrunA17_Chr5g0404511 | 48.265 | 317 | 104 | 4 | 1 | 258 | 1 | 316 | 2.75e-88 | 274 |
| Msa0434900 | MtrunA17_Chr5g0404481 | 56.089 | 271 | 117 | 2 | 261 | 530 | 49 | 318 | 1.71e-100 | 306 |
| Msa0434900 | MtrunA17_Chr5g0404481 | 47.950 | 317 | 105 | 4 | 1 | 258 | 1 | 316 | 6.50e-88 | 273 |
| Msa0434900 | MtrunA17_Chr4g0035121 | 49.097 | 277 | 139 | 1 | 256 | 530 | 33 | 309 | 3.35e-91 | 281 |
| Msa0434900 | MtrunA17_Chr4g0035121 | 40.656 | 305 | 131 | 2 | 3 | 257 | 2 | 306 | 1.46e-68 | 223 |
| Msa0434900 | MtrunA17_Chr8g0369391 | 47.407 | 270 | 135 | 3 | 267 | 530 | 44 | 312 | 3.73e-75 | 240 |
| Msa0434900 | MtrunA17_Chr8g0369391 | 37.662 | 308 | 137 | 4 | 3 | 256 | 2 | 308 | 7.98e-59 | 197 |
| Msa0434900 | MtrunA17_Chr5g0409651 | 46.097 | 269 | 137 | 3 | 267 | 529 | 44 | 310 | 6.39e-74 | 237 |
| Msa0434900 | MtrunA17_Chr5g0409651 | 37.987 | 308 | 133 | 5 | 4 | 256 | 3 | 307 | 2.59e-59 | 199 |
| Msa0434900 | MtrunA17_Chr5g0409641 | 46.617 | 266 | 134 | 3 | 267 | 526 | 44 | 307 | 4.17e-73 | 234 |
| Msa0434900 | MtrunA17_Chr5g0409641 | 37.987 | 308 | 133 | 5 | 4 | 256 | 3 | 307 | 6.22e-58 | 195 |
| Msa0434900 | MtrunA17_Chr3g0078901 | 42.066 | 271 | 152 | 3 | 260 | 530 | 40 | 305 | 2.00e-72 | 233 |
| Msa0434900 | MtrunA17_Chr3g0078901 | 37.954 | 303 | 140 | 4 | 2 | 258 | 3 | 303 | 1.20e-62 | 207 |
| Msa0434900 | MtrunA17_Chr3g0078831 | 42.264 | 265 | 148 | 3 | 266 | 530 | 46 | 305 | 2.91e-67 | 219 |
| Msa0434900 | MtrunA17_Chr3g0078831 | 37.954 | 303 | 140 | 4 | 2 | 258 | 3 | 303 | 1.47e-59 | 199 |
| Msa0434900 | MtrunA17_Chr1g0198771 | 38.202 | 267 | 163 | 1 | 266 | 530 | 52 | 318 | 3.61e-59 | 199 |
| Msa0434900 | MtrunA17_Chr1g0198771 | 31.290 | 310 | 162 | 3 | 4 | 263 | 13 | 321 | 1.27e-46 | 166 |
| Msa0434900 | MtrunA17_Chr3g0078941 | 42.927 | 205 | 112 | 3 | 326 | 530 | 12 | 211 | 1.34e-51 | 175 |
| Msa0434900 | MtrunA17_Chr3g0078941 | 33.000 | 200 | 87 | 3 | 104 | 258 | 12 | 209 | 5.14e-27 | 108 |
| Msa0434900 | MtrunA17_Chr3g0078951 | 50.000 | 106 | 49 | 3 | 2 | 106 | 3 | 105 | 4.16e-22 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0434900 | AT4G39230.1 | 66.909 | 275 | 91 | 0 | 256 | 530 | 34 | 308 | 1.98e-133 | 390 |
| Msa0434900 | AT4G39230.1 | 60.131 | 306 | 74 | 1 | 1 | 258 | 1 | 306 | 2.04e-121 | 359 |
| Msa0434900 | AT1G75280.1 | 65.217 | 276 | 93 | 2 | 256 | 529 | 35 | 309 | 3.82e-125 | 369 |
| Msa0434900 | AT1G75280.1 | 62.171 | 304 | 64 | 2 | 3 | 256 | 4 | 306 | 3.14e-119 | 353 |
| Msa0434900 | AT1G75290.1 | 63.768 | 276 | 98 | 1 | 256 | 529 | 35 | 310 | 2.59e-124 | 367 |
| Msa0434900 | AT1G75290.1 | 56.393 | 305 | 83 | 1 | 2 | 256 | 3 | 307 | 2.30e-112 | 336 |
| Msa0434900 | AT1G75290.2 | 63.768 | 276 | 98 | 1 | 256 | 529 | 62 | 337 | 1.49e-123 | 366 |
| Msa0434900 | AT1G75290.2 | 56.393 | 305 | 83 | 1 | 2 | 256 | 30 | 334 | 1.53e-111 | 335 |
| Msa0434900 | AT1G75300.1 | 57.241 | 290 | 105 | 3 | 256 | 529 | 35 | 321 | 4.46e-109 | 328 |
| Msa0434900 | AT1G75300.1 | 45.426 | 317 | 112 | 5 | 3 | 258 | 4 | 320 | 1.85e-73 | 236 |
| Msa0434900 | AT1G19540.1 | 57.348 | 279 | 115 | 2 | 256 | 530 | 32 | 310 | 1.88e-103 | 313 |
| Msa0434900 | AT1G19540.1 | 50.654 | 306 | 99 | 2 | 5 | 258 | 3 | 308 | 2.19e-93 | 287 |
| Msa0434900 | AT4G34540.1 | 47.636 | 275 | 139 | 1 | 256 | 530 | 37 | 306 | 1.95e-87 | 272 |
| Msa0434900 | AT4G34540.1 | 39.604 | 303 | 130 | 2 | 3 | 257 | 6 | 303 | 4.72e-66 | 216 |
| Msa0434900 | AT1G19540.2 | 59.375 | 224 | 87 | 2 | 256 | 475 | 32 | 255 | 1.59e-82 | 258 |
| Msa0434900 | AT1G19540.2 | 50.593 | 253 | 73 | 2 | 5 | 205 | 3 | 255 | 8.88e-71 | 227 |
| Msa0434900 | AT4G13660.1 | 44.322 | 273 | 144 | 3 | 264 | 530 | 47 | 317 | 3.77e-67 | 220 |
| Msa0434900 | AT4G13660.1 | 36.570 | 309 | 140 | 4 | 2 | 256 | 7 | 313 | 5.86e-54 | 185 |
| Msa0434900 | AT4G13660.2 | 44.322 | 273 | 144 | 3 | 264 | 530 | 47 | 317 | 3.77e-67 | 220 |
| Msa0434900 | AT4G13660.2 | 36.570 | 309 | 140 | 4 | 2 | 256 | 7 | 313 | 5.86e-54 | 185 |
| Msa0434900 | AT1G32100.1 | 43.333 | 270 | 145 | 3 | 267 | 530 | 50 | 317 | 5.40e-67 | 219 |
| Msa0434900 | AT1G32100.1 | 35.714 | 308 | 142 | 4 | 3 | 256 | 8 | 313 | 6.71e-52 | 179 |
Find 140 sgRNAs with CRISPR-Local
Find 430 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATAGCACGTCGAATTT+TGG | 0.137471 | 3_2:-87930612 | None:intergenic |
| CACGACTATGGGTGTTAATT+TGG | 0.229530 | 3_2:+87933641 | Msa0434900:CDS |
| AACATTACCAGTCTCTTTAA+TGG | 0.235620 | 3_2:-87933887 | None:intergenic |
| GCTCGGAATATTGTGTAATA+TGG | 0.236564 | 3_2:+87935210 | Msa0434900:three_prime_UTR |
| TTGAATGAATAAATGTTCTT+TGG | 0.240740 | 3_2:-87931042 | None:intergenic |
| TTTGAGATTGAGCCTTCTTT+TGG | 0.245864 | 3_2:+87934919 | Msa0434900:CDS |
| TGAATGAATAAATGTTCTTT+GGG | 0.284153 | 3_2:-87931041 | None:intergenic |
| CTCAATAATTTCAAAACTTT+AGG | 0.291956 | 3_2:+87929213 | Msa0434900:CDS |
| CCTCCACAATTTCACGACTA+TGG | 0.294665 | 3_2:+87933629 | Msa0434900:CDS |
| GTTGGTAGATACATAGGTAT+AGG | 0.311190 | 3_2:-87934245 | None:intergenic |
| GAAGATTATCGCTGCAATTA+AGG | 0.319373 | 3_2:+87929542 | Msa0434900:CDS |
| ATTTGCAGCTGTCTTCAATA+AGG | 0.334657 | 3_2:+87934483 | Msa0434900:intron |
| CAAAACTTTAGGCGTCAATT+TGG | 0.338853 | 3_2:+87929224 | Msa0434900:CDS |
| ATGATACGATGCTTGAGTTT+TGG | 0.341179 | 3_2:+87935266 | Msa0434900:three_prime_UTR |
| GTTGAATGAGTAAATGTTCT+TGG | 0.342329 | 3_2:-87934584 | None:intergenic |
| GTATCTACCAACTCCTTTGC+TGG | 0.357028 | 3_2:+87934256 | Msa0434900:CDS |
| TTTGTGATTGAGCCATCTTT+TGG | 0.365839 | 3_2:+87931312 | Msa0434900:CDS |
| GAATCGATCGAAAGTAATTA+AGG | 0.367927 | 3_2:+87929021 | Msa0434900:five_prime_UTR |
| GCCTTGTGGGAGAAGAAGAT+TGG | 0.369735 | 3_2:+87934616 | Msa0434900:CDS |
| ACAGTTGTGTACTTGACATC+TGG | 0.375136 | 3_2:-87931357 | None:intergenic |
| GCCTTGTGGGAGAAGAAGAT+TGG | 0.381870 | 3_2:+87931075 | Msa0434900:CDS |
| TGGATCATCCACAGCTCTAA+TGG | 0.384230 | 3_2:-87930986 | None:intergenic |
| GTGGAGGAGCTTAGCCTTGG+TGG | 0.402912 | 3_2:-87933613 | None:intergenic |
| TAAAGAGACTGGTAATGTTA+AGG | 0.403410 | 3_2:+87933891 | Msa0434900:CDS |
| ATCGATAATACCACGTTGAT+TGG | 0.408391 | 3_2:-87931252 | None:intergenic |
| TCACACACATGCTGCTGATC+AGG | 0.417659 | 3_2:+87933849 | Msa0434900:CDS |
| ATCGAAAGTAATTAAGGATC+AGG | 0.420974 | 3_2:+87929027 | Msa0434900:five_prime_UTR |
| ATTGCTAATCCTACATTGTC+TGG | 0.420981 | 3_2:-87934859 | None:intergenic |
| ATGTCGAATTTGTACTTTCA+CGG | 0.422437 | 3_2:-87934200 | None:intergenic |
| AAGAGACAAAGTCATTATCT+TGG | 0.430812 | 3_2:+87934324 | Msa0434900:CDS |
| AGAATCTTATTCAATGTCCT+TGG | 0.431387 | 3_2:-87931006 | None:intergenic |
| CAACGAGCTTGTAGCCTTGT+GGG | 0.437114 | 3_2:+87931062 | Msa0434900:CDS |
| AAACTTCTCAAGGATATTCA+AGG | 0.440563 | 3_2:+87931132 | Msa0434900:CDS |
| TTGAATGAGTAAATGTTCTT+GGG | 0.442585 | 3_2:-87934583 | None:intergenic |
| TAATAGAGGATAAACTTCTC+AGG | 0.447457 | 3_2:+87934662 | Msa0434900:CDS |
| TGGAGGAGCTTAGCCTTGGT+GGG | 0.448790 | 3_2:-87933612 | None:intergenic |
| TAAGGAGGCTGGTAACGTTA+AGG | 0.454571 | 3_2:+87929560 | Msa0434900:CDS |
| TTGAGGAGATTAGCCTTGGC+AGG | 0.461709 | 3_2:-87929195 | None:intergenic |
| CTTGGTGGACCTGTAGCTCC+AGG | 0.463568 | 3_2:-87934304 | None:intergenic |
| AGAGTGGTGTAGTTGACATC+CGG | 0.463970 | 3_2:-87934964 | None:intergenic |
| AATCCTACATTGTCTGGAAA+AGG | 0.466589 | 3_2:-87934853 | None:intergenic |
| CAACGATGTTATCGCCTTGT+GGG | 0.467739 | 3_2:+87934603 | Msa0434900:CDS |
| AATACCACGTTGATTGGAAT+AGG | 0.469491 | 3_2:-87931246 | None:intergenic |
| TTTGTCCAACCTGGAGCTAC+AGG | 0.481668 | 3_2:+87934295 | Msa0434900:CDS |
| TCCTTGAGAAGTTTATCCTC+TGG | 0.484267 | 3_2:-87931123 | None:intergenic |
| GATCAGCGAGGGTGGATTCA+CGG | 0.492277 | 3_2:-87929173 | None:intergenic |
| AGAAGGCTCAATCTCAAAGT+TGG | 0.492703 | 3_2:-87934914 | None:intergenic |
| ATCGCTGCCATTAAAGAGAC+TGG | 0.495657 | 3_2:+87933880 | Msa0434900:CDS |
| CTCCACAATTTCACGACTAT+GGG | 0.495937 | 3_2:+87933630 | Msa0434900:CDS |
| AGAGACAAAGTCATTATCTT+GGG | 0.498507 | 3_2:+87934325 | Msa0434900:CDS |
| CACCCATAGTCGTGAAATTG+TGG | 0.499376 | 3_2:-87933632 | None:intergenic |
| CCAGCAAAATCTGCATTTGA+AGG | 0.504040 | 3_2:+87930584 | Msa0434900:CDS |
| ATAATGACTTTGTCTCTTGG+TGG | 0.505831 | 3_2:-87934319 | None:intergenic |
| TTGGTAGATACATAGGTATA+GGG | 0.507969 | 3_2:-87934244 | None:intergenic |
| AGCCTTGGTGGGGTCAGACA+TGG | 0.508905 | 3_2:-87933601 | None:intergenic |
| TTCACGGACCAATGCAAAAG+TGG | 0.510674 | 3_2:-87929157 | None:intergenic |
| TACTTCAAACGAACTGATCA+AGG | 0.512935 | 3_2:-87931389 | None:intergenic |
| AAGATAATGACTTTGTCTCT+TGG | 0.516542 | 3_2:-87934322 | None:intergenic |
| ATCGCTGCAATTAAGGAGGC+TGG | 0.516620 | 3_2:+87929549 | Msa0434900:CDS |
| ATTCTCAAATGAAATGATCA+AGG | 0.517748 | 3_2:-87934996 | None:intergenic |
| GTAGAAGCAAGTGCAAAAGC+TGG | 0.517859 | 3_2:+87929129 | Msa0434900:CDS |
| GGTAGGCCACGCTCTGATTG+AGG | 0.518193 | 3_2:+87929512 | Msa0434900:CDS |
| ATTATTGAGGAGATTAGCCT+TGG | 0.522079 | 3_2:-87929199 | None:intergenic |
| TCCAGAGGATAAACTTCTCA+AGG | 0.522426 | 3_2:+87931122 | Msa0434900:CDS |
| CCTTGTGGGAGAAGAAGATT+GGG | 0.523149 | 3_2:+87931076 | Msa0434900:CDS |
| TAACACACGCGTTGCATCCA+TGG | 0.523365 | 3_2:+87929050 | Msa0434900:exon |
| CCTTGTGGGAGAAGAAGATT+GGG | 0.523799 | 3_2:+87934617 | Msa0434900:CDS |
| CACCACTCGGTGTTTGTGAA+AGG | 0.525734 | 3_2:+87931276 | Msa0434900:CDS |
| AAACTTCTCAGGGATATTGA+AGG | 0.530402 | 3_2:+87934673 | Msa0434900:CDS |
| GAAGCCTCAACCCCAAAAGA+AGG | 0.535959 | 3_2:-87934931 | None:intergenic |
| CCCAATCTTCTTCTCCCACA+AGG | 0.539941 | 3_2:-87934617 | None:intergenic |
| TAAGCCTCAACCCCAAAAGA+TGG | 0.540084 | 3_2:-87931324 | None:intergenic |
| TCTCTACGATAATGAGAGCT+TGG | 0.541283 | 3_2:+87933783 | Msa0434900:CDS |
| AAAGGAGTTGGTAGATACAT+AGG | 0.542824 | 3_2:-87934251 | None:intergenic |
| CCCAATCTTCTTCTCCCACA+AGG | 0.547082 | 3_2:-87931076 | None:intergenic |
| TTCAATAAGGAAGAAGACAT+TGG | 0.551282 | 3_2:+87934496 | Msa0434900:CDS |
| TCAACGATGTTATCGCCTTG+TGG | 0.553409 | 3_2:+87934602 | Msa0434900:CDS |
| TACGAATAATGACAATTGCT+CGG | 0.554046 | 3_2:+87935193 | Msa0434900:three_prime_UTR |
| CAGTTGTGTACTTGACATCT+GGG | 0.555264 | 3_2:-87931356 | None:intergenic |
| GTACCAACATTTGTCCAACC+TGG | 0.556184 | 3_2:+87934286 | Msa0434900:CDS |
| GGAGGAGCTTAGCCTTGGTG+GGG | 0.557357 | 3_2:-87933611 | None:intergenic |
| AAAATAACCAGCAAAGGAGT+TGG | 0.560210 | 3_2:-87934263 | None:intergenic |
| CGACATATGATTGAAGCTGA+AGG | 0.561768 | 3_2:+87934217 | Msa0434900:CDS |
| TGAGGCTTCTGCTTTATACC+CGG | 0.563811 | 3_2:+87934945 | Msa0434900:CDS |
| TCAACGAGCTTGTAGCCTTG+TGG | 0.567546 | 3_2:+87931061 | Msa0434900:CDS |
| GAATGAATAAATGTTCTTTG+GGG | 0.568027 | 3_2:-87931040 | None:intergenic |
| AATGAATAAATGTTCTTTGG+GGG | 0.568257 | 3_2:-87931039 | None:intergenic |
| TCTGTATGATCATGAGAACT+TGG | 0.570219 | 3_2:+87929452 | Msa0434900:CDS |
| GAGTGGTGTAGTTGACATCC+GGG | 0.579953 | 3_2:-87934963 | None:intergenic |
| ACGTCGTTCCCAAATTCTGA+AGG | 0.580113 | 3_2:-87934136 | None:intergenic |
| AACATTCACCATTAGAGCTG+TGG | 0.581419 | 3_2:+87930978 | Msa0434900:CDS |
| AAAGTCATTATCTTGGGTGA+TGG | 0.581506 | 3_2:+87934331 | Msa0434900:CDS |
| GTGGACCTGTAGCTCCAGGT+TGG | 0.581878 | 3_2:-87934300 | None:intergenic |
| AGTAATCAAGCAGGTAGATG+TGG | 0.585296 | 3_2:+87929479 | Msa0434900:CDS |
| GGTAGATGTGGTCATATCTA+CGG | 0.586142 | 3_2:+87929491 | Msa0434900:CDS |
| CTTGGTGAAAGTAATCAAGC+AGG | 0.588181 | 3_2:+87929470 | Msa0434900:CDS |
| CGACAGAGGTGGATCAGTTG+TGG | 0.590006 | 3_2:-87935095 | None:intergenic |
| GCTCCAGGTTGGACAAATGT+TGG | 0.594940 | 3_2:-87934289 | None:intergenic |
| CACCCTCGCTGATCCTGCCA+AGG | 0.595340 | 3_2:+87929182 | Msa0434900:CDS |
| AATGAGTAAATGTTCTTGGG+AGG | 0.600435 | 3_2:-87934580 | None:intergenic |
| GGTATTATCGATCCACCACT+CGG | 0.602530 | 3_2:+87931263 | Msa0434900:CDS |
| TTAAAGCTGTGGATGATCCA+AGG | 0.604389 | 3_2:+87934530 | Msa0434900:CDS |
| CAGCAAAATCTGCATTTGAA+GGG | 0.606294 | 3_2:+87930585 | Msa0434900:CDS |
| TGGTACAAAATAACCAGCAA+AGG | 0.607224 | 3_2:-87934269 | None:intergenic |
| ATTGTGGAGGAGCTTAGCCT+TGG | 0.614967 | 3_2:-87933616 | None:intergenic |
| GGATGTCAACTACACCACTC+TGG | 0.615304 | 3_2:+87934966 | Msa0434900:CDS |
| AATAGAGGATAAACTTCTCA+GGG | 0.615441 | 3_2:+87934663 | Msa0434900:CDS |
| AACCTACACTATTAAAGCTG+TGG | 0.616425 | 3_2:+87934519 | Msa0434900:CDS |
| TTAGAGCTGTGGATGATCCA+AGG | 0.628287 | 3_2:+87930989 | Msa0434900:CDS |
| CTTTCACAAACACCGAGTGG+TGG | 0.628695 | 3_2:-87931275 | None:intergenic |
| TCACGGACCAATGCAAAAGT+GGG | 0.629925 | 3_2:-87929156 | None:intergenic |
| TTCAACAAGGAAGATGACAT+TGG | 0.630695 | 3_2:+87930955 | Msa0434900:CDS |
| CTTGGCAGGATCAGCGAGGG+TGG | 0.631457 | 3_2:-87929181 | None:intergenic |
| CGTCGTTCCCAAATTCTGAA+GGG | 0.635524 | 3_2:-87934135 | None:intergenic |
| GCTCAATCTCAAAGTTGGTG+TGG | 0.637181 | 3_2:-87934909 | None:intergenic |
| ATCCACAGCTTTAATAGTGT+AGG | 0.637952 | 3_2:-87934521 | None:intergenic |
| TTCAGAATTTGGGAACGACG+TGG | 0.641605 | 3_2:+87934138 | Msa0434900:CDS |
| AAATGTTCTTGGGAGGTCTG+AGG | 0.641726 | 3_2:-87934573 | None:intergenic |
| ACGTCATTCCCAAATTCCGA+AGG | 0.641793 | 3_2:-87930539 | None:intergenic |
| ATCGGAGGAACAGGTTACAT+CGG | 0.642196 | 3_2:+87929096 | Msa0434900:CDS |
| GATGTGGTCATATCTACGGT+AGG | 0.649142 | 3_2:+87929495 | Msa0434900:CDS |
| CTTGATCCTCAATCAGAGCG+TGG | 0.652635 | 3_2:-87929518 | None:intergenic |
| ATGTACAGCGGTGTTCAACA+AGG | 0.653602 | 3_2:+87930942 | Msa0434900:intron |
| TAAGAAGCAATAAGCGACAG+AGG | 0.658226 | 3_2:-87935109 | None:intergenic |
| TGACGTTGATCGTGTCCATG+CGG | 0.662937 | 3_2:+87930556 | Msa0434900:CDS |
| AGCCTTGGCAGGATCAGCGA+GGG | 0.665918 | 3_2:-87929184 | None:intergenic |
| TGTCACTCAGTGTTTGTGAA+AGG | 0.666291 | 3_2:+87934883 | Msa0434900:CDS |
| TAGTCGGTGGTAACATACTG+AGG | 0.666775 | 3_2:-87935236 | None:intergenic |
| GATTATCGCTGCAATTAAGG+AGG | 0.668758 | 3_2:+87929545 | Msa0434900:CDS |
| AGCAATGAAGCAAGTAGACG+TGG | 0.672283 | 3_2:+87933810 | Msa0434900:CDS |
| GAAGCAATAAGCGACAGAGG+TGG | 0.674095 | 3_2:-87935106 | None:intergenic |
| TGTCAACTACACCACTCTGG+AGG | 0.681149 | 3_2:+87934969 | Msa0434900:CDS |
| CCATAGTCGTGAAATTGTGG+AGG | 0.682789 | 3_2:-87933629 | None:intergenic |
| CACCTTTCACAAACACCGAG+TGG | 0.683877 | 3_2:-87931278 | None:intergenic |
| AACCATGTCTGACCCCACCA+AGG | 0.684946 | 3_2:+87933599 | Msa0434900:CDS |
| ATCAAGGCATTCCTCCAGAG+TGG | 0.685958 | 3_2:-87934980 | None:intergenic |
| AGATGTCAAGTACACAACTG+TGG | 0.707472 | 3_2:+87931359 | Msa0434900:CDS |
| TAGCCTTGGCAGGATCAGCG+AGG | 0.707487 | 3_2:-87929185 | None:intergenic |
| TGTCAAGTACACAACTGTGG+AGG | 0.712034 | 3_2:+87931362 | Msa0434900:CDS |
| GGCTCCTATTCCAATCAACG+TGG | 0.763745 | 3_2:+87931242 | Msa0434900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATATATAAATATTA+GGG | - | chr3_2:87932559-87932578 | None:intergenic | 0.0% |
| !!! | TTTTTTTATATATAAATATT+AGG | - | chr3_2:87932560-87932579 | None:intergenic | 0.0% |
| !!! | TTTTATTTATTATAATAAAA+TGG | + | chr3_2:87932843-87932862 | Msa0434900:intron | 0.0% |
| !! | TAATAATATTAAGTTTGAAA+TGG | + | chr3_2:87929407-87929426 | Msa0434900:intron | 10.0% |
| !!! | GAATAGTTTTATTTTTTTTA+AGG | + | chr3_2:87930230-87930249 | Msa0434900:intron | 10.0% |
| !!! | AAATAGTTTTATTTTTTTTG+AGG | + | chr3_2:87930263-87930282 | Msa0434900:intron | 10.0% |
| !!! | AATAGTTTTATTTTTTTTGA+GGG | + | chr3_2:87930264-87930283 | Msa0434900:intron | 10.0% |
| !! | TTAGATAGAAAATTAAATAA+AGG | + | chr3_2:87932456-87932475 | Msa0434900:intron | 10.0% |
| !! | TTGTTATAAATTATATACAT+AGG | + | chr3_2:87932618-87932637 | Msa0434900:intron | 10.0% |
| !!! | TATTAGAAAGTTTTTTTTAA+GGG | - | chr3_2:87932906-87932925 | None:intergenic | 10.0% |
| !!! | TTATTAGAAAGTTTTTTTTA+AGG | - | chr3_2:87932907-87932926 | None:intergenic | 10.0% |
| !! | AATATCATTTGTTTATTTAT+TGG | - | chr3_2:87933315-87933334 | None:intergenic | 10.0% |
| !!! | TATTACATAAAATTTTTCAA+GGG | - | chr3_2:87934647-87934666 | None:intergenic | 10.0% |
| !! | CTAATGTTTATATTTAAATA+TGG | + | chr3_2:87934789-87934808 | Msa0434900:intron | 10.0% |
| !! | AATCAAATTCATTAAAAAAG+TGG | - | chr3_2:87929276-87929295 | None:intergenic | 15.0% |
| !! | AAAAATGTGAAAAAGAAAAA+GGG | - | chr3_2:87929854-87929873 | None:intergenic | 15.0% |
| !! | AAAAAATGTGAAAAAGAAAA+AGG | - | chr3_2:87929855-87929874 | None:intergenic | 15.0% |
| !!! | ATTTTTTAAGAAAAGTTGTT+AGG | + | chr3_2:87929868-87929887 | Msa0434900:intron | 15.0% |
| !!! | TTTTTTAAGAAAAGTTGTTA+GGG | + | chr3_2:87929869-87929888 | Msa0434900:intron | 15.0% |
| !! | ACTTTACATATTATCAATTA+GGG | + | chr3_2:87929961-87929980 | Msa0434900:intron | 15.0% |
| !!! | ATAGTTTTATTTTTTTTGAG+GGG | + | chr3_2:87930265-87930284 | Msa0434900:intron | 15.0% |
| !! | AATATAATCAGAATATTAGT+TGG | - | chr3_2:87930323-87930342 | None:intergenic | 15.0% |
| !!! | CTGATTATATTTTTCAATAA+AGG | + | chr3_2:87930332-87930351 | Msa0434900:intron | 15.0% |
| !!! | TTTAATTTGAGAGTTTTTTA+GGG | - | chr3_2:87930461-87930480 | None:intergenic | 15.0% |
| !!! | ACCTTTTTTGAATATTATTT+GGG | - | chr3_2:87931525-87931544 | None:intergenic | 15.0% |
| !!! | AACCTTTTTTGAATATTATT+TGG | - | chr3_2:87931526-87931545 | None:intergenic | 15.0% |
| !! | AATAAATATAGAGAAACAAA+AGG | + | chr3_2:87932221-87932240 | Msa0434900:intron | 15.0% |
| !! | ATAAATATAGAGAAACAAAA+GGG | + | chr3_2:87932222-87932241 | Msa0434900:intron | 15.0% |
| !! | ATACTTTAACAGATATTAAA+CGG | + | chr3_2:87932409-87932428 | Msa0434900:intron | 15.0% |
| !! | TGATATTTCAACAAAATTTA+AGG | + | chr3_2:87932516-87932535 | Msa0434900:intron | 15.0% |
| !! | GATATTTCAACAAAATTTAA+GGG | + | chr3_2:87932517-87932536 | Msa0434900:intron | 15.0% |
| !! | CAATAAAAAAGAGAAAAAAA+AGG | - | chr3_2:87933067-87933086 | None:intergenic | 15.0% |
| !!! | CTTTTTTTTCTCTTTTTTAT+TGG | + | chr3_2:87933065-87933084 | Msa0434900:intron | 15.0% |
| !! | GTTCAAAAATTATTATGAAA+TGG | + | chr3_2:87933156-87933175 | Msa0434900:intron | 15.0% |
| !! | AACAAAAATACTAAATAGAT+AGG | - | chr3_2:87933210-87933229 | None:intergenic | 15.0% |
| !! | AGAGATAAAAATAAAATATG+AGG | - | chr3_2:87933370-87933389 | None:intergenic | 15.0% |
| !!! | CTATTACATAAAATTTTTCA+AGG | - | chr3_2:87934648-87934667 | None:intergenic | 15.0% |
| !!! | TGAAAAATTTTATGTAATAG+AGG | + | chr3_2:87934648-87934667 | Msa0434900:CDS | 15.0% |
| !! | TTGAAGAGAAATTTATAAAA+AGG | + | chr3_2:87934742-87934761 | Msa0434900:intron | 15.0% |
| !! | TGAAGAGAAATTTATAAAAA+GGG | + | chr3_2:87934743-87934762 | Msa0434900:intron | 15.0% |
| !! | ATCTTAAAAAAAAAGAAACT+TGG | - | chr3_2:87935168-87935187 | None:intergenic | 15.0% |
| !!! | CTAAAGTTTTGAAATTATTG+AGG | - | chr3_2:87929215-87929234 | None:intergenic | 20.0% |
| !! | CTCAATAATTTCAAAACTTT+AGG | + | chr3_2:87929213-87929232 | Msa0434900:CDS | 20.0% |
| !! | AAATTCATTAAAAAAGTGGA+AGG | - | chr3_2:87929272-87929291 | None:intergenic | 20.0% |
| !! | ATATTGTGTTTGTATATCAT+TGG | + | chr3_2:87929383-87929402 | Msa0434900:intron | 20.0% |
| !! | AATGGTAATTAAATTATTGC+AGG | + | chr3_2:87929425-87929444 | Msa0434900:intron | 20.0% |
| !! | ATGGTAATTAAATTATTGCA+GGG | + | chr3_2:87929426-87929445 | Msa0434900:intron | 20.0% |
| !! | AAAATGTGAAAAAGAAAAAG+GGG | - | chr3_2:87929853-87929872 | None:intergenic | 20.0% |
| !! | TTTAATACACATACAAACAA+AGG | - | chr3_2:87929937-87929956 | None:intergenic | 20.0% |
| !! | GACTTTACATATTATCAATT+AGG | + | chr3_2:87929960-87929979 | Msa0434900:intron | 20.0% |
| !! | CTTTACATATTATCAATTAG+GGG | + | chr3_2:87929962-87929981 | Msa0434900:intron | 20.0% |
| !! | ATGCATCTAGTAATTTAATA+AGG | + | chr3_2:87930008-87930027 | Msa0434900:intron | 20.0% |
| !! | TTAATAAGGAGTTTACATTT+AGG | + | chr3_2:87930022-87930041 | Msa0434900:intron | 20.0% |
| !! | TAATAAGGAGTTTACATTTA+GGG | + | chr3_2:87930023-87930042 | Msa0434900:intron | 20.0% |
| !! | AAAAATAGTTAGTACTACTA+CGG | + | chr3_2:87930293-87930312 | Msa0434900:intron | 20.0% |
| !!! | GTTTAATTTGAGAGTTTTTT+AGG | - | chr3_2:87930462-87930481 | None:intergenic | 20.0% |
| !!! | TCATTTTCTTAAATCATTAC+CGG | - | chr3_2:87930799-87930818 | None:intergenic | 20.0% |
| !! | TGAATGAATAAATGTTCTTT+GGG | - | chr3_2:87931044-87931063 | None:intergenic | 20.0% |
| !! | TTGAATGAATAAATGTTCTT+TGG | - | chr3_2:87931045-87931064 | None:intergenic | 20.0% |
| !! | ACCCAAATAATATTCAAAAA+AGG | + | chr3_2:87931521-87931540 | Msa0434900:intron | 20.0% |
| !!! | ATCCATTAAATTTAATTTGC+CGG | + | chr3_2:87931768-87931787 | Msa0434900:intron | 20.0% |
| !! | GTTATAGTACATGTTATTAT+TGG | - | chr3_2:87931795-87931814 | None:intergenic | 20.0% |
| !!! | ATGTCGATTTTATAAAACTT+GGG | - | chr3_2:87931843-87931862 | None:intergenic | 20.0% |
| !!! | AATGTCGATTTTATAAAACT+TGG | - | chr3_2:87931844-87931863 | None:intergenic | 20.0% |
| !! | ATTAAAGAGTTGAAATAAGA+AGG | + | chr3_2:87932141-87932160 | Msa0434900:intron | 20.0% |
| !! | TTAAAGAGTTGAAATAAGAA+GGG | + | chr3_2:87932142-87932161 | Msa0434900:intron | 20.0% |
| !!! | TACAATTTTAAAGCAAATCT+AGG | + | chr3_2:87932180-87932199 | Msa0434900:intron | 20.0% |
| !! | GAAGAAAAAAAAAGATTAAG+TGG | + | chr3_2:87932273-87932292 | Msa0434900:intron | 20.0% |
| !! | AAAAAAGATTAAGTGGAAAA+TGG | + | chr3_2:87932280-87932299 | Msa0434900:intron | 20.0% |
| !! | GATAGAAAATTAAATAAAGG+AGG | + | chr3_2:87932459-87932478 | Msa0434900:intron | 20.0% |
| !! | TGTTTGATTAAAAAATAGAG+AGG | + | chr3_2:87932486-87932505 | Msa0434900:intron | 20.0% |
| !! | GTTTGATTAAAAAATAGAGA+GGG | + | chr3_2:87932487-87932506 | Msa0434900:intron | 20.0% |
| !! | TTATGGTTAGAAATTTAGAA+GGG | - | chr3_2:87932692-87932711 | None:intergenic | 20.0% |
| !!! | GTATTTTTGTTTTTTCTTGT+TGG | + | chr3_2:87933219-87933238 | Msa0434900:intron | 20.0% |
| !! | GGTAAATAAATGTAATATGT+AGG | - | chr3_2:87933409-87933428 | None:intergenic | 20.0% |
| !! | ATATAAGGTAAATTAAGAGT+GGG | - | chr3_2:87933687-87933706 | None:intergenic | 20.0% |
| !! | AATATAAGGTAAATTAAGAG+TGG | - | chr3_2:87933688-87933707 | None:intergenic | 20.0% |
| !! | TGGTGATATACTATAATATA+AGG | - | chr3_2:87933702-87933721 | None:intergenic | 20.0% |
| !!! | CTTTGAATATCTATCTATTT+TGG | + | chr3_2:87934021-87934040 | Msa0434900:intron | 20.0% |
| !! | AACAATTTAAACAATGTCTT+TGG | - | chr3_2:87934068-87934087 | None:intergenic | 20.0% |
| !! | GAGTATAAAATTTATGAAGA+GGG | + | chr3_2:87934765-87934784 | Msa0434900:intron | 20.0% |
| !! | AAAAGCAAGATTTTGTTCAT+CGG | + | chr3_2:87929078-87929097 | Msa0434900:CDS | 25.0% |
| ! | TGGTAATTAAATTATTGCAG+GGG | + | chr3_2:87929427-87929446 | Msa0434900:intron | 25.0% |
| ! | CATTTGGATTATGACTAAAT+GGG | - | chr3_2:87929714-87929733 | None:intergenic | 25.0% |
| ! | TCATTTGGATTATGACTAAA+TGG | - | chr3_2:87929715-87929734 | None:intergenic | 25.0% |
| ! | GGGACAAATATAAAATCAAA+TGG | + | chr3_2:87930043-87930062 | Msa0434900:intron | 25.0% |
| ! | AGTATATGAAAATGTTTGCA+AGG | - | chr3_2:87930206-87930225 | None:intergenic | 25.0% |
| ! | TATTTCTTGTATATGTACAG+CGG | + | chr3_2:87930930-87930949 | Msa0434900:intron | 25.0% |
| ! | AATGAATAAATGTTCTTTGG+GGG | - | chr3_2:87931042-87931061 | None:intergenic | 25.0% |
| ! | GAATGAATAAATGTTCTTTG+GGG | - | chr3_2:87931043-87931062 | None:intergenic | 25.0% |
| !! | ATATGAGTTGTTTGTTACTT+TGG | + | chr3_2:87931441-87931460 | Msa0434900:intron | 25.0% |
| !!! | TTTCATTTGCTATGTAAACT+TGG | + | chr3_2:87931487-87931506 | Msa0434900:intron | 25.0% |
| ! | ACATTGAACAAATGGAATTT+AGG | + | chr3_2:87931702-87931721 | Msa0434900:intron | 25.0% |
| ! | CATTGAACAAATGGAATTTA+GGG | + | chr3_2:87931703-87931722 | Msa0434900:intron | 25.0% |
| ! | ATTGAACAAATGGAATTTAG+GGG | + | chr3_2:87931704-87931723 | Msa0434900:intron | 25.0% |
| !!! | TCCATTAAATTTAATTTGCC+GGG | + | chr3_2:87931769-87931788 | Msa0434900:intron | 25.0% |
| !! | TGCTTTTACAAATAATAGAG+GGG | - | chr3_2:87931872-87931891 | None:intergenic | 25.0% |
| !! | GTGCTTTTACAAATAATAGA+GGG | - | chr3_2:87931873-87931892 | None:intergenic | 25.0% |
| !! | AGTGCTTTTACAAATAATAG+AGG | - | chr3_2:87931874-87931893 | None:intergenic | 25.0% |
| !!! | GTGATTTTAACAAATGAGTT+TGG | - | chr3_2:87932019-87932038 | None:intergenic | 25.0% |
| ! | TCGTAAGAAAATTGAACAAA+AGG | - | chr3_2:87932067-87932086 | None:intergenic | 25.0% |
| !!! | ATGGAAATAGCTTTGAAAAT+AGG | + | chr3_2:87932299-87932318 | Msa0434900:intron | 25.0% |
| !!! | TGGAAATAGCTTTGAAAATA+GGG | + | chr3_2:87932300-87932319 | Msa0434900:intron | 25.0% |
| !!! | TATTAAACGGTGTTATTTAG+AGG | + | chr3_2:87932422-87932441 | Msa0434900:intron | 25.0% |
| !!! | ATTAAACGGTGTTATTTAGA+GGG | + | chr3_2:87932423-87932442 | Msa0434900:intron | 25.0% |
| ! | ATTTCAACAAAATTTAAGGG+AGG | + | chr3_2:87932520-87932539 | Msa0434900:intron | 25.0% |
| !!! | CTTTTTTTGACAATTGGAAA+GGG | - | chr3_2:87932660-87932679 | None:intergenic | 25.0% |
| !!! | TCTTTTTTTGACAATTGGAA+AGG | - | chr3_2:87932661-87932680 | None:intergenic | 25.0% |
| ! | GTTATGGTTAGAAATTTAGA+AGG | - | chr3_2:87932693-87932712 | None:intergenic | 25.0% |
| ! | CAAACATATCGATAAATAAG+TGG | - | chr3_2:87932753-87932772 | None:intergenic | 25.0% |
| ! | AATAAAAGTTCCATCTACAA+TGG | + | chr3_2:87932944-87932963 | Msa0434900:intron | 25.0% |
| !! | ATTAGAGTTTGAAATGAGAA+TGG | + | chr3_2:87933746-87933765 | Msa0434900:intron | 25.0% |
| ! | AAAATATGCAAAAGAAGAAG+AGG | - | chr3_2:87933927-87933946 | None:intergenic | 25.0% |
| !!! | TTTTTGTTTTTGTTTGAGAG+AGG | - | chr3_2:87933999-87934018 | None:intergenic | 25.0% |
| ! | ATGCAAATTAAAATACAGTG+AGG | - | chr3_2:87934450-87934469 | None:intergenic | 25.0% |
| ! | TTGAATGAGTAAATGTTCTT+GGG | - | chr3_2:87934586-87934605 | None:intergenic | 25.0% |
| ! | GGAGTATAAAATTTATGAAG+AGG | + | chr3_2:87934764-87934783 | Msa0434900:intron | 25.0% |
| ! | ATTCTCAAATGAAATGATCA+AGG | - | chr3_2:87934999-87935018 | None:intergenic | 25.0% |
| !! | TCGTATCATTTTCAAATAGT+CGG | - | chr3_2:87935255-87935274 | None:intergenic | 25.0% |
| !! | GAAAAAACTCTAAAGCAGTT+TGG | + | chr3_2:87928991-87929010 | Msa0434900:five_prime_UTR | 30.0% |
| GAATCGATCGAAAGTAATTA+AGG | + | chr3_2:87929021-87929040 | Msa0434900:five_prime_UTR | 30.0% | |
| ATCGAAAGTAATTAAGGATC+AGG | + | chr3_2:87929027-87929046 | Msa0434900:five_prime_UTR | 30.0% | |
| TTCATTAAAAAAGTGGAAGG+AGG | - | chr3_2:87929269-87929288 | None:intergenic | 30.0% | |
| GAGTTAATATTTCCAGCTAA+AGG | - | chr3_2:87929359-87929378 | None:intergenic | 30.0% | |
| GGTAATTAAATTATTGCAGG+GGG | + | chr3_2:87929428-87929447 | Msa0434900:intron | 30.0% | |
| AAACCAGAAAAAAGGGTAAA+AGG | - | chr3_2:87929653-87929672 | None:intergenic | 30.0% | |
| !!! | TTTTACCCTTTTTTCTGGTT+TGG | + | chr3_2:87929652-87929671 | Msa0434900:intron | 30.0% |
| TCGTTTGAACACAAAGTTAA+AGG | - | chr3_2:87930424-87930443 | None:intergenic | 30.0% | |
| !!! | TTTGAGAGTTTTTTAGGGTT+CGG | - | chr3_2:87930456-87930475 | None:intergenic | 30.0% |
| CAAATTAAACTCTTGCTTGT+AGG | + | chr3_2:87930472-87930491 | Msa0434900:intron | 30.0% | |
| !! | GCTTGTAGGAATTTTAACAT+TGG | + | chr3_2:87930486-87930505 | Msa0434900:intron | 30.0% |
| !!! | AGATTTTTTCCTTCGGAATT+TGG | + | chr3_2:87930530-87930549 | Msa0434900:CDS | 30.0% |
| !!! | GATTTTTTCCTTCGGAATTT+GGG | + | chr3_2:87930531-87930550 | Msa0434900:CDS | 30.0% |
| ! | TATATGACGACTTTGTCTTT+TGG | - | chr3_2:87930734-87930753 | None:intergenic | 30.0% |
| AAAGACAAAGTCGTCATATA+TGG | + | chr3_2:87930734-87930753 | Msa0434900:intron | 30.0% | |
| !! | CATGTTAGTTTGTTACCTTT+GGG | - | chr3_2:87930770-87930789 | None:intergenic | 30.0% |
| !! | ACATGTTAGTTTGTTACCTT+TGG | - | chr3_2:87930771-87930790 | None:intergenic | 30.0% |
| AAGGTAACAAACTAACATGT+TGG | + | chr3_2:87930771-87930790 | Msa0434900:intron | 30.0% | |
| AGAATCTTATTCAATGTCCT+TGG | - | chr3_2:87931009-87931028 | None:intergenic | 30.0% | |
| !!! | TGGAAGAAAAGTTTTTTCGA+CGG | - | chr3_2:87931106-87931125 | None:intergenic | 30.0% |
| AAACTTCTCAAGGATATTCA+AGG | + | chr3_2:87931132-87931151 | Msa0434900:CDS | 30.0% | |
| ! | TATATTCCCTTTTATTGCAG+AGG | + | chr3_2:87931221-87931240 | Msa0434900:intron | 30.0% |
| ! | TCGATTTTATAAAACTTGGG+AGG | - | chr3_2:87931840-87931859 | None:intergenic | 30.0% |
| ! | TTTTACAAATAATAGAGGGG+AGG | - | chr3_2:87931869-87931888 | None:intergenic | 30.0% |
| ! | TTTCAGAGTGTTAAGTTCAA+GGG | - | chr3_2:87931902-87931921 | None:intergenic | 30.0% |
| !!! | ATGGTAATCCCTTTTTCAAA+CGG | - | chr3_2:87931927-87931946 | None:intergenic | 30.0% |
| AACTGATTATTTGTCAAGCA+TGG | - | chr3_2:87931946-87931965 | None:intergenic | 30.0% | |
| AAGAAAATTGAACAAAAGGC+TGG | - | chr3_2:87932063-87932082 | None:intergenic | 30.0% | |
| ! | TTACGATAGATACATTGACT+CGG | + | chr3_2:87932081-87932100 | Msa0434900:intron | 30.0% |
| TATAGAGAAACAAAAGGGAA+TGG | + | chr3_2:87932227-87932246 | Msa0434900:intron | 30.0% | |
| !! | TTAAACGGTGTTATTTAGAG+GGG | + | chr3_2:87932424-87932443 | Msa0434900:intron | 30.0% |
| !!! | CCATGTCTTTTTTTGACAAT+TGG | - | chr3_2:87932666-87932685 | None:intergenic | 30.0% |
| CCAATTGTCAAAAAAAGACA+TGG | + | chr3_2:87932663-87932682 | Msa0434900:intron | 30.0% | |
| CATCACTAGCAATAAAATGT+TGG | - | chr3_2:87932783-87932802 | None:intergenic | 30.0% | |
| GTCATACATAAGTGATAGAT+GGG | - | chr3_2:87933001-87933020 | None:intergenic | 30.0% | |
| AGTCATACATAAGTGATAGA+TGG | - | chr3_2:87933002-87933021 | None:intergenic | 30.0% | |
| GGATAAGAAAGAAATGTGTA+TGG | + | chr3_2:87933240-87933259 | Msa0434900:intron | 30.0% | |
| AAGAGCAAGATACTGATAAT+AGG | + | chr3_2:87933487-87933506 | Msa0434900:intron | 30.0% | |
| CTCTAATATAGTAATATGCC+TGG | - | chr3_2:87933733-87933752 | None:intergenic | 30.0% | |
| AACATTACCAGTCTCTTTAA+TGG | - | chr3_2:87933890-87933909 | None:intergenic | 30.0% | |
| ! | TAAAGAGACTGGTAATGTTA+AGG | + | chr3_2:87933891-87933910 | Msa0434900:CDS | 30.0% |
| !!! | TATCTATTTTGGCTTGTTCT+AGG | + | chr3_2:87934032-87934051 | Msa0434900:intron | 30.0% |
| !!! | ATCTATTTTGGCTTGTTCTA+GGG | + | chr3_2:87934033-87934052 | Msa0434900:intron | 30.0% |
| ! | AGATTTTTCCCTTCAGAATT+TGG | + | chr3_2:87934127-87934146 | Msa0434900:CDS | 30.0% |
| ! | GATTTTTCCCTTCAGAATTT+GGG | + | chr3_2:87934128-87934147 | Msa0434900:CDS | 30.0% |
| ATGTCGAATTTGTACTTTCA+CGG | - | chr3_2:87934203-87934222 | None:intergenic | 30.0% | |
| TTGGTAGATACATAGGTATA+GGG | - | chr3_2:87934247-87934266 | None:intergenic | 30.0% | |
| AAGATAATGACTTTGTCTCT+TGG | - | chr3_2:87934325-87934344 | None:intergenic | 30.0% | |
| AAGAGACAAAGTCATTATCT+TGG | + | chr3_2:87934324-87934343 | Msa0434900:CDS | 30.0% | |
| AGAGACAAAGTCATTATCTT+GGG | + | chr3_2:87934325-87934344 | Msa0434900:CDS | 30.0% | |
| TTCAATAAGGAAGAAGACAT+TGG | + | chr3_2:87934496-87934515 | Msa0434900:CDS | 30.0% | |
| ! | AGAATTTTGTTCAATGTCCT+TGG | - | chr3_2:87934550-87934569 | None:intergenic | 30.0% |
| GTTGAATGAGTAAATGTTCT+TGG | - | chr3_2:87934587-87934606 | None:intergenic | 30.0% | |
| TAATAGAGGATAAACTTCTC+AGG | + | chr3_2:87934662-87934681 | Msa0434900:CDS | 30.0% | |
| AATAGAGGATAAACTTCTCA+GGG | + | chr3_2:87934663-87934682 | Msa0434900:CDS | 30.0% | |
| TACGAATAATGACAATTGCT+CGG | + | chr3_2:87935193-87935212 | Msa0434900:three_prime_UTR | 30.0% | |
| ! | TATCATTTTCAAATAGTCGG+TGG | - | chr3_2:87935252-87935271 | None:intergenic | 30.0% |
| !! | ATTATTGAGGAGATTAGCCT+TGG | - | chr3_2:87929202-87929221 | None:intergenic | 35.0% |
| CAAAACTTTAGGCGTCAATT+TGG | + | chr3_2:87929224-87929243 | Msa0434900:CDS | 35.0% | |
| GGAGGAATATATTACGTACA+GGG | - | chr3_2:87929251-87929270 | None:intergenic | 35.0% | |
| AGGAGGAATATATTACGTAC+AGG | - | chr3_2:87929252-87929271 | None:intergenic | 35.0% | |
| TCTGTATGATCATGAGAACT+TGG | + | chr3_2:87929452-87929471 | Msa0434900:CDS | 35.0% | |
| GAAGATTATCGCTGCAATTA+AGG | + | chr3_2:87929542-87929561 | Msa0434900:CDS | 35.0% | |
| AGAAGCCAAACCAGAAAAAA+GGG | - | chr3_2:87929660-87929679 | None:intergenic | 35.0% | |
| AAGAAGCCAAACCAGAAAAA+AGG | - | chr3_2:87929661-87929680 | None:intergenic | 35.0% | |
| ! | GAAAAAGGGGTATACATACA+GGG | - | chr3_2:87929840-87929859 | None:intergenic | 35.0% |
| ! | AGAAAAAGGGGTATACATAC+AGG | - | chr3_2:87929841-87929860 | None:intergenic | 35.0% |
| ! | TATCAATTAGGGGCATGTTT+AGG | + | chr3_2:87929972-87929991 | Msa0434900:intron | 35.0% |
| CAGCAAAATCTGCATTTGAA+GGG | + | chr3_2:87930585-87930604 | Msa0434900:CDS | 35.0% | |
| ! | TTCAATAGCACGTCGAATTT+TGG | - | chr3_2:87930615-87930634 | None:intergenic | 35.0% |
| TTGCTAGACACATATGTGTA+GGG | - | chr3_2:87930650-87930669 | None:intergenic | 35.0% | |
| TTCAACAAGGAAGATGACAT+TGG | + | chr3_2:87930955-87930974 | Msa0434900:CDS | 35.0% | |
| ! | CGAAAAAACTTTTCTTCCAG+AGG | + | chr3_2:87931107-87931126 | Msa0434900:CDS | 35.0% |
| ! | AATACCACGTTGATTGGAAT+AGG | - | chr3_2:87931249-87931268 | None:intergenic | 35.0% |
| ATCGATAATACCACGTTGAT+TGG | - | chr3_2:87931255-87931274 | None:intergenic | 35.0% | |
| ! | TTTGTGATTGAGCCATCTTT+TGG | + | chr3_2:87931312-87931331 | Msa0434900:CDS | 35.0% |
| ! | TTGTGATTGAGCCATCTTTT+GGG | + | chr3_2:87931313-87931332 | Msa0434900:CDS | 35.0% |
| TACTTCAAACGAACTGATCA+AGG | - | chr3_2:87931392-87931411 | None:intergenic | 35.0% | |
| TTGTCAAAATGTTGCCTTCT+TGG | + | chr3_2:87931553-87931572 | Msa0434900:intron | 35.0% | |
| GCCCGGCAAATTAAATTTAA+TGG | - | chr3_2:87931773-87931792 | None:intergenic | 35.0% | |
| AGTACATGTTATTATTGGCC+CGG | - | chr3_2:87931790-87931809 | None:intergenic | 35.0% | |
| ! | GTTTCAGAGTGTTAAGTTCA+AGG | - | chr3_2:87931903-87931922 | None:intergenic | 35.0% |
| AGAAACAAAAGGGAATGGAA+GGG | + | chr3_2:87932232-87932251 | Msa0434900:intron | 35.0% | |
| ! | TTGACCTTTTCCATTGAAGA+TGG | + | chr3_2:87932379-87932398 | Msa0434900:intron | 35.0% |
| TATATCACAGCCATCTTCAA+TGG | - | chr3_2:87932392-87932411 | None:intergenic | 35.0% | |
| AGCAAGATACTGATAATAGG+AGG | + | chr3_2:87933490-87933509 | Msa0434900:intron | 35.0% | |
| GCAAGATACTGATAATAGGA+GGG | + | chr3_2:87933491-87933510 | Msa0434900:intron | 35.0% | |
| TATAGTAGAAGCAAGCGTAA+AGG | + | chr3_2:87933542-87933561 | Msa0434900:intron | 35.0% | |
| ! | ATCACACTTTTGCTTTGGTT+AGG | + | chr3_2:87933571-87933590 | Msa0434900:intron | 35.0% |
| ! | TCACACTTTTGCTTTGGTTA+GGG | + | chr3_2:87933572-87933591 | Msa0434900:intron | 35.0% |
| ! | TGGGTGTTTGAAATCTTACA+TGG | - | chr3_2:87933668-87933687 | None:intergenic | 35.0% |
| TATATCACCAATGAACATCC+AGG | + | chr3_2:87933712-87933731 | Msa0434900:intron | 35.0% | |
| TAATATGCCTGGATGTTCAT+TGG | - | chr3_2:87933722-87933741 | None:intergenic | 35.0% | |
| ! | GTTTGAAATGAGAATGGCAT+TGG | + | chr3_2:87933752-87933771 | Msa0434900:intron | 35.0% |
| ! | GTTGGTAGATACATAGGTAT+AGG | - | chr3_2:87934248-87934267 | None:intergenic | 35.0% |
| !! | AAAGGAGTTGGTAGATACAT+AGG | - | chr3_2:87934254-87934273 | None:intergenic | 35.0% |
| AAAATAACCAGCAAAGGAGT+TGG | - | chr3_2:87934266-87934285 | None:intergenic | 35.0% | |
| TGGTACAAAATAACCAGCAA+AGG | - | chr3_2:87934272-87934291 | None:intergenic | 35.0% | |
| ATAATGACTTTGTCTCTTGG+TGG | - | chr3_2:87934322-87934341 | None:intergenic | 35.0% | |
| AAAGTCATTATCTTGGGTGA+TGG | + | chr3_2:87934331-87934350 | Msa0434900:CDS | 35.0% | |
| ! | TTGGGTGATGGCAATAAAAA+AGG | + | chr3_2:87934343-87934362 | Msa0434900:CDS | 35.0% |
| !! | GTGGTTTAGTTCATGCATTT+TGG | + | chr3_2:87934393-87934412 | Msa0434900:intron | 35.0% |
| ACAGTGAGGTATGCAAATAT+TGG | - | chr3_2:87934436-87934455 | None:intergenic | 35.0% | |
| ATTTGCAGCTGTCTTCAATA+AGG | + | chr3_2:87934483-87934502 | Msa0434900:intron | 35.0% | |
| AACCTACACTATTAAAGCTG+TGG | + | chr3_2:87934519-87934538 | Msa0434900:CDS | 35.0% | |
| ! | ATCCACAGCTTTAATAGTGT+AGG | - | chr3_2:87934524-87934543 | None:intergenic | 35.0% |
| AATGAGTAAATGTTCTTGGG+AGG | - | chr3_2:87934583-87934602 | None:intergenic | 35.0% | |
| AAACTTCTCAGGGATATTGA+AGG | + | chr3_2:87934673-87934692 | Msa0434900:CDS | 35.0% | |
| AATCCTACATTGTCTGGAAA+AGG | - | chr3_2:87934856-87934875 | None:intergenic | 35.0% | |
| ATTGCTAATCCTACATTGTC+TGG | - | chr3_2:87934862-87934881 | None:intergenic | 35.0% | |
| !! | TTTGAGATTGAGCCTTCTTT+TGG | + | chr3_2:87934919-87934938 | Msa0434900:CDS | 35.0% |
| ! | TTGAGATTGAGCCTTCTTTT+GGG | + | chr3_2:87934920-87934939 | Msa0434900:CDS | 35.0% |
| GCTCGGAATATTGTGTAATA+TGG | + | chr3_2:87935210-87935229 | Msa0434900:three_prime_UTR | 35.0% | |
| !! | AATCTTGCTTTTCTCAGCCA+TGG | - | chr3_2:87929070-87929089 | None:intergenic | 40.0% |
| ! | AGCAAGATTTTGTTCATCGG+AGG | + | chr3_2:87929081-87929100 | Msa0434900:CDS | 40.0% |
| ! | ATTTTGTTCATCGGAGGAAC+AGG | + | chr3_2:87929087-87929106 | Msa0434900:CDS | 40.0% |
| CTTGGTGAAAGTAATCAAGC+AGG | + | chr3_2:87929470-87929489 | Msa0434900:CDS | 40.0% | |
| AGTAATCAAGCAGGTAGATG+TGG | + | chr3_2:87929479-87929498 | Msa0434900:CDS | 40.0% | |
| GGTAGATGTGGTCATATCTA+CGG | + | chr3_2:87929491-87929510 | Msa0434900:CDS | 40.0% | |
| GATTATCGCTGCAATTAAGG+AGG | + | chr3_2:87929545-87929564 | Msa0434900:CDS | 40.0% | |
| ! | GTGCCTTTTACCCTTTTTTC+TGG | + | chr3_2:87929647-87929666 | Msa0434900:intron | 40.0% |
| TCATGTACACCACACAAAAG+TGG | + | chr3_2:87930126-87930145 | Msa0434900:intron | 40.0% | |
| AAAGTGGACAGTCACAATCA+TGG | + | chr3_2:87930142-87930161 | Msa0434900:intron | 40.0% | |
| TGTGTCAAAGTCCAAATTGC+CGG | - | chr3_2:87930180-87930199 | None:intergenic | 40.0% | |
| !!! | TCCGCAGAGATTTTTTCCTT+CGG | + | chr3_2:87930523-87930542 | Msa0434900:intron | 40.0% |
| TCCGAAGGAAAAAATCTCTG+CGG | - | chr3_2:87930527-87930546 | None:intergenic | 40.0% | |
| ! | CCTTCAAATGCAGATTTTGC+TGG | - | chr3_2:87930587-87930606 | None:intergenic | 40.0% |
| CCAGCAAAATCTGCATTTGA+AGG | + | chr3_2:87930584-87930603 | Msa0434900:CDS | 40.0% | |
| ! | AATTCGACGTGCTATTGAAG+CGG | + | chr3_2:87930616-87930635 | Msa0434900:intron | 40.0% |
| GTTGCTAGACACATATGTGT+AGG | - | chr3_2:87930651-87930670 | None:intergenic | 40.0% | |
| TGTCTAGCAACTACTTTGCT+GGG | + | chr3_2:87930660-87930679 | Msa0434900:intron | 40.0% | |
| ! | ATGACGACTTTGTCTTTTGG+AGG | - | chr3_2:87930731-87930750 | None:intergenic | 40.0% |
| AAAGTCGTCATATATGGCGA+TGG | + | chr3_2:87930740-87930759 | Msa0434900:intron | 40.0% | |
| ACAAACTAACATGTTGGCAC+CGG | + | chr3_2:87930777-87930796 | Msa0434900:intron | 40.0% | |
| AACATTCACCATTAGAGCTG+TGG | + | chr3_2:87930978-87930997 | Msa0434900:CDS | 40.0% | |
| TCCAGAGGATAAACTTCTCA+AGG | + | chr3_2:87931122-87931141 | Msa0434900:CDS | 40.0% | |
| TCCTTGAGAAGTTTATCCTC+TGG | - | chr3_2:87931126-87931145 | None:intergenic | 40.0% | |
| TAGGAGCCTCTGCAATAAAA+GGG | - | chr3_2:87931230-87931249 | None:intergenic | 40.0% | |
| ATAGGAGCCTCTGCAATAAA+AGG | - | chr3_2:87931231-87931250 | None:intergenic | 40.0% | |
| ! | TGTGATTGAGCCATCTTTTG+GGG | + | chr3_2:87931314-87931333 | Msa0434900:CDS | 40.0% |
| CAGTTGTGTACTTGACATCT+GGG | - | chr3_2:87931359-87931378 | None:intergenic | 40.0% | |
| ACAGTTGTGTACTTGACATC+TGG | - | chr3_2:87931360-87931379 | None:intergenic | 40.0% | |
| AGATGTCAAGTACACAACTG+TGG | + | chr3_2:87931359-87931378 | Msa0434900:CDS | 40.0% | |
| !! | TGTTACTTTGGAGTTTGACG+CGG | + | chr3_2:87931453-87931472 | Msa0434900:intron | 40.0% |
| AAACTCAGATGACACCAAGA+AGG | - | chr3_2:87931570-87931589 | None:intergenic | 40.0% | |
| GCTCATAGTTTGACTAAGCA+CGG | - | chr3_2:87931675-87931694 | None:intergenic | 40.0% | |
| TGCTTAGTCAAACTATGAGC+AGG | + | chr3_2:87931675-87931694 | Msa0434900:intron | 40.0% | |
| GCTTAGTCAAACTATGAGCA+GGG | + | chr3_2:87931676-87931695 | Msa0434900:intron | 40.0% | |
| CTTAGTCAAACTATGAGCAG+GGG | + | chr3_2:87931677-87931696 | Msa0434900:intron | 40.0% | |
| CAGGGGAAACATTGAACAAA+TGG | + | chr3_2:87931694-87931713 | Msa0434900:intron | 40.0% | |
| ! | TCTGAAACGCCGTTTGAAAA+AGG | + | chr3_2:87931915-87931934 | Msa0434900:intron | 40.0% |
| CTGAAACGCCGTTTGAAAAA+GGG | + | chr3_2:87931916-87931935 | Msa0434900:intron | 40.0% | |
| GACCTACACTACACAATGAA+GGG | - | chr3_2:87931988-87932007 | None:intergenic | 40.0% | |
| TGACCTACACTACACAATGA+AGG | - | chr3_2:87931989-87932008 | None:intergenic | 40.0% | |
| !!! | TGCTATTTTTCCCATACGCT+GGG | - | chr3_2:87932121-87932140 | None:intergenic | 40.0% |
| !!! | TTGCTATTTTTCCCATACGC+TGG | - | chr3_2:87932122-87932141 | None:intergenic | 40.0% |
| GAGAAACAAAAGGGAATGGA+AGG | + | chr3_2:87932231-87932250 | Msa0434900:intron | 40.0% | |
| GATCGTGCACAATCTTTGAA+CGG | + | chr3_2:87932346-87932365 | Msa0434900:intron | 40.0% | |
| ACAGCCATCTTCAATGGAAA+AGG | - | chr3_2:87932386-87932405 | None:intergenic | 40.0% | |
| ! | ATGCTGCTCAACGATTTTCA+CGG | - | chr3_2:87932717-87932736 | None:intergenic | 40.0% |
| ACTCAAGTATTCGAGCAATG+GGG | - | chr3_2:87933430-87933449 | None:intergenic | 40.0% | |
| CACTCAAGTATTCGAGCAAT+GGG | - | chr3_2:87933431-87933450 | None:intergenic | 40.0% | |
| TCACTCAAGTATTCGAGCAA+TGG | - | chr3_2:87933432-87933451 | None:intergenic | 40.0% | |
| ATACTGATAATAGGAGGGAC+TGG | + | chr3_2:87933496-87933515 | Msa0434900:intron | 40.0% | |
| ! | TGGACATCACACTTTTGCTT+TGG | + | chr3_2:87933566-87933585 | Msa0434900:intron | 40.0% |
| CTCCACAATTTCACGACTAT+GGG | + | chr3_2:87933630-87933649 | Msa0434900:CDS | 40.0% | |
| CACGACTATGGGTGTTAATT+TGG | + | chr3_2:87933641-87933660 | Msa0434900:CDS | 40.0% | |
| !! | AAATGAGAATGGCATTGGCA+GGG | + | chr3_2:87933757-87933776 | Msa0434900:intron | 40.0% |
| TCTCTACGATAATGAGAGCT+TGG | + | chr3_2:87933783-87933802 | Msa0434900:CDS | 40.0% | |
| TGCAAAAGAAGAAGAGGACA+AGG | - | chr3_2:87933921-87933940 | None:intergenic | 40.0% | |
| !!! | TACAGATTTTGCTGGCTCAA+CGG | - | chr3_2:87934176-87934195 | None:intergenic | 40.0% |
| CGACATATGATTGAAGCTGA+AGG | + | chr3_2:87934217-87934236 | Msa0434900:CDS | 40.0% | |
| TTAACCACTACTTCTACGCT+TGG | + | chr3_2:87934371-87934390 | Msa0434900:intron | 40.0% | |
| TTAAAGCTGTGGATGATCCA+AGG | + | chr3_2:87934530-87934549 | Msa0434900:CDS | 40.0% | |
| TTCTCAGGGATATTGAAGGT+TGG | + | chr3_2:87934677-87934696 | Msa0434900:intron | 40.0% | |
| ! | ACACCTTTTCCAGACAATGT+AGG | + | chr3_2:87934850-87934869 | Msa0434900:CDS | 40.0% |
| TGTCACTCAGTGTTTGTGAA+AGG | + | chr3_2:87934883-87934902 | Msa0434900:CDS | 40.0% | |
| AGAAGGCTCAATCTCAAAGT+TGG | - | chr3_2:87934917-87934936 | None:intergenic | 40.0% | |
| ! | TGAGATTGAGCCTTCTTTTG+GGG | + | chr3_2:87934921-87934940 | Msa0434900:CDS | 40.0% |
| TAAGAAGCAATAAGCGACAG+AGG | - | chr3_2:87935112-87935131 | None:intergenic | 40.0% | |
| ATCGGAGGAACAGGTTACAT+CGG | + | chr3_2:87929096-87929115 | Msa0434900:CDS | 45.0% | |
| GTAGAAGCAAGTGCAAAAGC+TGG | + | chr3_2:87929129-87929148 | Msa0434900:CDS | 45.0% | |
| !! | TGGACATCCCACTTTTGCAT+TGG | + | chr3_2:87929149-87929168 | Msa0434900:CDS | 45.0% |
| TCACGGACCAATGCAAAAGT+GGG | - | chr3_2:87929159-87929178 | None:intergenic | 45.0% | |
| TTCACGGACCAATGCAAAAG+TGG | - | chr3_2:87929160-87929179 | None:intergenic | 45.0% | |
| ACAGAGAGTGATCCTTTAGC+TGG | + | chr3_2:87929344-87929363 | Msa0434900:intron | 45.0% | |
| GATGTGGTCATATCTACGGT+AGG | + | chr3_2:87929495-87929514 | Msa0434900:CDS | 45.0% | |
| ! | TAAGGAGGCTGGTAACGTTA+AGG | + | chr3_2:87929560-87929579 | Msa0434900:CDS | 45.0% |
| ! | AAGGGGTATACATACAGGGA+GGG | - | chr3_2:87929836-87929855 | None:intergenic | 45.0% |
| ! | AAAGGGGTATACATACAGGG+AGG | - | chr3_2:87929837-87929856 | None:intergenic | 45.0% |
| !! | TGTGACTGTCCACTTTTGTG+TGG | - | chr3_2:87930138-87930157 | None:intergenic | 45.0% |
| TGGACAGTCACAATCATGGT+GGG | + | chr3_2:87930146-87930165 | Msa0434900:intron | 45.0% | |
| ACGTCATTCCCAAATTCCGA+AGG | - | chr3_2:87930542-87930561 | None:intergenic | 45.0% | |
| ! | ATTTTGCTGGATCTACCGCA+TGG | - | chr3_2:87930574-87930593 | None:intergenic | 45.0% |
| GTGTCTAGCAACTACTTTGC+TGG | + | chr3_2:87930659-87930678 | Msa0434900:intron | 45.0% | |
| !! | TTTGTCTTTTGGAGGAGGTG+GGG | - | chr3_2:87930723-87930742 | None:intergenic | 45.0% |
| !! | CTTTGTCTTTTGGAGGAGGT+GGG | - | chr3_2:87930724-87930743 | None:intergenic | 45.0% |
| !! | ACTTTGTCTTTTGGAGGAGG+TGG | - | chr3_2:87930725-87930744 | None:intergenic | 45.0% |
| !! | ACGACTTTGTCTTTTGGAGG+AGG | - | chr3_2:87930728-87930747 | None:intergenic | 45.0% |
| TATGGCGATGGAAATCCCAA+AGG | + | chr3_2:87930752-87930771 | Msa0434900:intron | 45.0% | |
| ATGTACAGCGGTGTTCAACA+AGG | + | chr3_2:87930942-87930961 | Msa0434900:intron | 45.0% | |
| ! | TGGATCATCCACAGCTCTAA+TGG | - | chr3_2:87930989-87931008 | None:intergenic | 45.0% |
| TTAGAGCTGTGGATGATCCA+AGG | + | chr3_2:87930989-87931008 | Msa0434900:CDS | 45.0% | |
| CCTTGTGGGAGAAGAAGATT+GGG | + | chr3_2:87931076-87931095 | Msa0434900:CDS | 45.0% | |
| GGTATTATCGATCCACCACT+CGG | + | chr3_2:87931263-87931282 | Msa0434900:CDS | 45.0% | |
| TAAGCCTCAACCCCAAAAGA+TGG | - | chr3_2:87931327-87931346 | None:intergenic | 45.0% | |
| TGTCAAGTACACAACTGTGG+AGG | + | chr3_2:87931362-87931381 | Msa0434900:CDS | 45.0% | |
| ! | CAGAGTGTTAAGTTCAAGGG+AGG | - | chr3_2:87931899-87931918 | None:intergenic | 45.0% |
| CTCCCTTCATTGTGTAGTGT+AGG | + | chr3_2:87931983-87932002 | Msa0434900:intron | 45.0% | |
| !! | CGATAGATACATTGACTCGG+AGG | + | chr3_2:87932084-87932103 | Msa0434900:intron | 45.0% |
| !! | TAGATACATTGACTCGGAGG+TGG | + | chr3_2:87932087-87932106 | Msa0434900:intron | 45.0% |
| GTGCACAATCTTTGAACGGA+TGG | + | chr3_2:87932350-87932369 | Msa0434900:intron | 45.0% | |
| !! | AACGGTGTTATTTAGAGGGG+AGG | + | chr3_2:87932427-87932446 | Msa0434900:intron | 45.0% |
| ! | CAACGATTTTCACGGGGTTA+TGG | - | chr3_2:87932709-87932728 | None:intergenic | 45.0% |
| ! | TGCTGCTCAACGATTTTCAC+GGG | - | chr3_2:87932716-87932735 | None:intergenic | 45.0% |
| CCATAGTCGTGAAATTGTGG+AGG | - | chr3_2:87933632-87933651 | None:intergenic | 45.0% | |
| CCTCCACAATTTCACGACTA+TGG | + | chr3_2:87933629-87933648 | Msa0434900:CDS | 45.0% | |
| CACCCATAGTCGTGAAATTG+TGG | - | chr3_2:87933635-87933654 | None:intergenic | 45.0% | |
| !! | GAAATGAGAATGGCATTGGC+AGG | + | chr3_2:87933756-87933775 | Msa0434900:intron | 45.0% |
| !! | AATGAGAATGGCATTGGCAG+GGG | + | chr3_2:87933758-87933777 | Msa0434900:intron | 45.0% |
| AGCAATGAAGCAAGTAGACG+TGG | + | chr3_2:87933810-87933829 | Msa0434900:CDS | 45.0% | |
| ATCGCTGCCATTAAAGAGAC+TGG | + | chr3_2:87933880-87933899 | Msa0434900:CDS | 45.0% | |
| CGTCGTTCCCAAATTCTGAA+GGG | - | chr3_2:87934138-87934157 | None:intergenic | 45.0% | |
| ACGTCGTTCCCAAATTCTGA+AGG | - | chr3_2:87934139-87934158 | None:intergenic | 45.0% | |
| TTCAGAATTTGGGAACGACG+TGG | + | chr3_2:87934138-87934157 | Msa0434900:CDS | 45.0% | |
| ! | ACGGCGAATACAGATTTTGC+TGG | - | chr3_2:87934184-87934203 | None:intergenic | 45.0% |
| GTATCTACCAACTCCTTTGC+TGG | + | chr3_2:87934256-87934275 | Msa0434900:CDS | 45.0% | |
| GTACCAACATTTGTCCAACC+TGG | + | chr3_2:87934286-87934305 | Msa0434900:CDS | 45.0% | |
| AAATGTTCTTGGGAGGTCTG+AGG | - | chr3_2:87934576-87934595 | None:intergenic | 45.0% | |
| TCAACGATGTTATCGCCTTG+TGG | + | chr3_2:87934602-87934621 | Msa0434900:CDS | 45.0% | |
| CAACGATGTTATCGCCTTGT+GGG | + | chr3_2:87934603-87934622 | Msa0434900:CDS | 45.0% | |
| CCTTGTGGGAGAAGAAGATT+GGG | + | chr3_2:87931076-87931095 | Msa0434900:CDS | 45.0% | |
| !! | GCTCAATCTCAAAGTTGGTG+TGG | - | chr3_2:87934912-87934931 | None:intergenic | 45.0% |
| TGAGGCTTCTGCTTTATACC+CGG | + | chr3_2:87934945-87934964 | Msa0434900:CDS | 45.0% | |
| AGAGTGGTGTAGTTGACATC+CGG | - | chr3_2:87934967-87934986 | None:intergenic | 45.0% | |
| TAGTCGGTGGTAACATACTG+AGG | - | chr3_2:87935239-87935258 | None:intergenic | 45.0% | |
| !! | AATATAATATAATATAATTC+TGG | + | chr3_2:87929603-87929622 | Msa0434900:intron | 5.0% |
| !! | ATAAATAAATATTTATCATT+TGG | - | chr3_2:87929730-87929749 | None:intergenic | 5.0% |
| !!! | ATTTAAATATTTTTTATTTG+AGG | + | chr3_2:87930082-87930101 | Msa0434900:intron | 5.0% |
| TAACACACGCGTTGCATCCA+TGG | + | chr3_2:87929050-87929069 | Msa0434900:exon | 50.0% | |
| !! | TTGAGGAGATTAGCCTTGGC+AGG | - | chr3_2:87929198-87929217 | None:intergenic | 50.0% |
| CTTGATCCTCAATCAGAGCG+TGG | - | chr3_2:87929521-87929540 | None:intergenic | 50.0% | |
| ATCGCTGCAATTAAGGAGGC+TGG | + | chr3_2:87929549-87929568 | Msa0434900:CDS | 50.0% | |
| GGTATACATACAGGGAGGGA+GGG | - | chr3_2:87929832-87929851 | None:intergenic | 50.0% | |
| GTGGACAGTCACAATCATGG+TGG | + | chr3_2:87930145-87930164 | Msa0434900:intron | 50.0% | |
| ! | AGTCACAATCATGGTGGGAG+TGG | + | chr3_2:87930151-87930170 | Msa0434900:intron | 50.0% |
| ! | GTCACAATCATGGTGGGAGT+GGG | + | chr3_2:87930152-87930171 | Msa0434900:intron | 50.0% |
| TGACGTTGATCGTGTCCATG+CGG | + | chr3_2:87930556-87930575 | Msa0434900:CDS | 50.0% | |
| TGTCCTGGCTGAGCTAATGT+GGG | - | chr3_2:87930695-87930714 | None:intergenic | 50.0% | |
| TTGTCCTGGCTGAGCTAATG+TGG | - | chr3_2:87930696-87930715 | None:intergenic | 50.0% | |
| ! | TCAACGAGCTTGTAGCCTTG+TGG | + | chr3_2:87931061-87931080 | Msa0434900:CDS | 50.0% |
| !! | CAACGAGCTTGTAGCCTTGT+GGG | + | chr3_2:87931062-87931081 | Msa0434900:CDS | 50.0% |
| GCCTTGTGGGAGAAGAAGAT+TGG | + | chr3_2:87931075-87931094 | Msa0434900:CDS | 50.0% | |
| CCCAATCTTCTTCTCCCACA+AGG | - | chr3_2:87931079-87931098 | None:intergenic | 50.0% | |
| GGCTCCTATTCCAATCAACG+TGG | + | chr3_2:87931242-87931261 | Msa0434900:CDS | 50.0% | |
| CTTTCACAAACACCGAGTGG+TGG | - | chr3_2:87931278-87931297 | None:intergenic | 50.0% | |
| !! | CACCACTCGGTGTTTGTGAA+AGG | + | chr3_2:87931276-87931295 | Msa0434900:CDS | 50.0% |
| CACCTTTCACAAACACCGAG+TGG | - | chr3_2:87931281-87931300 | None:intergenic | 50.0% | |
| !!! | TGAGCCATCTTTTGGGGTTG+AGG | + | chr3_2:87931320-87931339 | Msa0434900:CDS | 50.0% |
| ! | TTTTCCCATACGCTGGGTCA+TGG | - | chr3_2:87932115-87932134 | None:intergenic | 50.0% |
| ACAAAAGGGAATGGAAGGGC+AGG | + | chr3_2:87932236-87932255 | Msa0434900:intron | 50.0% | |
| CAAAAGGGAATGGAAGGGCA+GGG | + | chr3_2:87932237-87932256 | Msa0434900:intron | 50.0% | |
| GGAAGGGCAGGGAATCTATA+TGG | + | chr3_2:87932248-87932267 | Msa0434900:intron | 50.0% | |
| AGGGCAGGGAATCTATATGG+TGG | + | chr3_2:87932251-87932270 | Msa0434900:intron | 50.0% | |
| ! | GCTGCTCAACGATTTTCACG+GGG | - | chr3_2:87932715-87932734 | None:intergenic | 50.0% |
| ! | GAGTGAGAAGAAGTGTGCAG+TGG | + | chr3_2:87933446-87933465 | Msa0434900:intron | 50.0% |
| TGTGCAGTGGTCACGTGAAA+TGG | + | chr3_2:87933459-87933478 | Msa0434900:intron | 50.0% | |
| !! | ATAGGAGGGACTGGCTACAT+TGG | + | chr3_2:87933505-87933524 | Msa0434900:intron | 50.0% |
| GTAGAAGCAAGCGTAAAGGC+TGG | + | chr3_2:87933546-87933565 | Msa0434900:intron | 50.0% | |
| ATTGTGGAGGAGCTTAGCCT+TGG | - | chr3_2:87933619-87933638 | None:intergenic | 50.0% | |
| !! | ATGAGAATGGCATTGGCAGG+GGG | + | chr3_2:87933759-87933778 | Msa0434900:intron | 50.0% |
| TCACACACATGCTGCTGATC+AGG | + | chr3_2:87933849-87933868 | Msa0434900:CDS | 50.0% | |
| !!! | ATTTTGCTGGCTCAACGGCA+TGG | - | chr3_2:87934171-87934190 | None:intergenic | 50.0% |
| ! | GCTCCAGGTTGGACAAATGT+TGG | - | chr3_2:87934292-87934311 | None:intergenic | 50.0% |
| TTTGTCCAACCTGGAGCTAC+AGG | + | chr3_2:87934295-87934314 | Msa0434900:CDS | 50.0% | |
| ACCACTACTTCTACGCTTGG+TGG | + | chr3_2:87934374-87934393 | Msa0434900:intron | 50.0% | |
| ACCACCAAGCGTAGAAGTAG+TGG | - | chr3_2:87934378-87934397 | None:intergenic | 50.0% | |
| GCCTTGTGGGAGAAGAAGAT+TGG | + | chr3_2:87931075-87931094 | Msa0434900:CDS | 50.0% | |
| CCCAATCTTCTTCTCCCACA+AGG | - | chr3_2:87931079-87931098 | None:intergenic | 50.0% | |
| !!! | TGAGCCTTCTTTTGGGGTTG+AGG | + | chr3_2:87934927-87934946 | Msa0434900:CDS | 50.0% |
| GAAGCCTCAACCCCAAAAGA+AGG | - | chr3_2:87934934-87934953 | None:intergenic | 50.0% | |
| GAGTGGTGTAGTTGACATCC+GGG | - | chr3_2:87934966-87934985 | None:intergenic | 50.0% | |
| GGATGTCAACTACACCACTC+TGG | + | chr3_2:87934966-87934985 | Msa0434900:CDS | 50.0% | |
| TGTCAACTACACCACTCTGG+AGG | + | chr3_2:87934969-87934988 | Msa0434900:CDS | 50.0% | |
| ! | ATCAAGGCATTCCTCCAGAG+TGG | - | chr3_2:87934983-87935002 | None:intergenic | 50.0% |
| GAAGCAATAAGCGACAGAGG+TGG | - | chr3_2:87935109-87935128 | None:intergenic | 50.0% | |
| ! | GATCAGCGAGGGTGGATTCA+CGG | - | chr3_2:87929176-87929195 | None:intergenic | 55.0% |
| GGGTATACATACAGGGAGGG+AGG | - | chr3_2:87929833-87929852 | None:intergenic | 55.0% | |
| ! | ATCATGGTGGGAGTGGGATC+CGG | + | chr3_2:87930158-87930177 | Msa0434900:intron | 55.0% |
| ! | CGACGTGCTATTGAAGCGGA+AGG | + | chr3_2:87930620-87930639 | Msa0434900:intron | 55.0% |
| GTCCTGGCTGAGCTAATGTG+GGG | - | chr3_2:87930694-87930713 | None:intergenic | 55.0% | |
| TGGTTCCATGACCCAGCGTA+TGG | + | chr3_2:87932107-87932126 | Msa0434900:intron | 55.0% | |
| GGTTCCATGACCCAGCGTAT+GGG | + | chr3_2:87932108-87932127 | Msa0434900:intron | 55.0% | |
| GCAGTGGTCACGTGAAATGG+CGG | + | chr3_2:87933462-87933481 | Msa0434900:intron | 55.0% | |
| AACCATGTCTGACCCCACCA+AGG | + | chr3_2:87933599-87933618 | Msa0434900:CDS | 55.0% | |
| !! | TGGAGGAGCTTAGCCTTGGT+GGG | - | chr3_2:87933615-87933634 | None:intergenic | 55.0% |
| CGACAGAGGTGGATCAGTTG+TGG | - | chr3_2:87935098-87935117 | None:intergenic | 55.0% | |
| AGCCTTGGCAGGATCAGCGA+GGG | - | chr3_2:87929187-87929206 | None:intergenic | 60.0% | |
| ! | TAGCCTTGGCAGGATCAGCG+AGG | - | chr3_2:87929188-87929207 | None:intergenic | 60.0% |
| GGTAGGCCACGCTCTGATTG+AGG | + | chr3_2:87929512-87929531 | Msa0434900:CDS | 60.0% | |
| GGGAGTGGGATCCGGCAATT+TGG | + | chr3_2:87930166-87930185 | Msa0434900:intron | 60.0% | |
| CTCCCCACATTAGCTCAGCC+AGG | + | chr3_2:87930689-87930708 | Msa0434900:intron | 60.0% | |
| AGCCTTGGTGGGGTCAGACA+TGG | - | chr3_2:87933604-87933623 | None:intergenic | 60.0% | |
| !! | GGAGGAGCTTAGCCTTGGTG+GGG | - | chr3_2:87933614-87933633 | None:intergenic | 60.0% |
| !! | GTGGAGGAGCTTAGCCTTGG+TGG | - | chr3_2:87933616-87933635 | None:intergenic | 60.0% |
| GTGGACCTGTAGCTCCAGGT+TGG | - | chr3_2:87934303-87934322 | None:intergenic | 60.0% | |
| ! | CTTGGTGGACCTGTAGCTCC+AGG | - | chr3_2:87934307-87934326 | None:intergenic | 60.0% |
| CTTGGCAGGATCAGCGAGGG+TGG | - | chr3_2:87929184-87929203 | None:intergenic | 65.0% | |
| CACCCTCGCTGATCCTGCCA+AGG | + | chr3_2:87929182-87929201 | Msa0434900:CDS | 65.0% | |
| GGAGGTGGGGCGAATTGTCC+TGG | - | chr3_2:87930710-87930729 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 87928969 | 87935288 | 87928969 | ID=Msa0434900;Name=Msa0434900 |
| chr3_2 | mRNA | 87928969 | 87935288 | 87928969 | ID=Msa0434900-mRNA-1;Parent=Msa0434900;Name=Msa0434900-mRNA-1;_AED=0.21;_eAED=0.21;_QI=100|0.77|0.5|1|1|1|10|274|530 |
| chr3_2 | exon | 87928969 | 87929251 | 87928969 | ID=Msa0434900-mRNA-1:exon:25743;Parent=Msa0434900-mRNA-1 |
| chr3_2 | exon | 87929447 | 87929581 | 87929447 | ID=Msa0434900-mRNA-1:exon:25744;Parent=Msa0434900-mRNA-1 |
| chr3_2 | exon | 87930530 | 87930623 | 87930530 | ID=Msa0434900-mRNA-1:exon:25745;Parent=Msa0434900-mRNA-1 |
| chr3_2 | exon | 87930950 | 87931153 | 87930950 | ID=Msa0434900-mRNA-1:exon:25746;Parent=Msa0434900-mRNA-1 |
| chr3_2 | exon | 87931241 | 87931397 | 87931241 | ID=Msa0434900-mRNA-1:exon:25747;Parent=Msa0434900-mRNA-1 |
| chr3_2 | exon | 87933593 | 87933668 | 87933593 | ID=Msa0434900-mRNA-1:exon:25748;Parent=Msa0434900-mRNA-1 |
| chr3_2 | exon | 87933778 | 87933912 | 87933778 | ID=Msa0434900-mRNA-1:exon:25749;Parent=Msa0434900-mRNA-1 |
| chr3_2 | exon | 87934127 | 87934364 | 87934127 | ID=Msa0434900-mRNA-1:exon:25750;Parent=Msa0434900-mRNA-1 |
| chr3_2 | exon | 87934491 | 87934694 | 87934491 | ID=Msa0434900-mRNA-1:exon:25751;Parent=Msa0434900-mRNA-1 |
| chr3_2 | exon | 87934848 | 87935288 | 87934848 | ID=Msa0434900-mRNA-1:exon:25752;Parent=Msa0434900-mRNA-1 |
| chr3_2 | five_prime_UTR | 87928969 | 87929068 | 87928969 | ID=Msa0434900-mRNA-1:five_prime_utr;Parent=Msa0434900-mRNA-1 |
| chr3_2 | CDS | 87929069 | 87929251 | 87929069 | ID=Msa0434900-mRNA-1:cds;Parent=Msa0434900-mRNA-1 |
| chr3_2 | CDS | 87929447 | 87929581 | 87929447 | ID=Msa0434900-mRNA-1:cds;Parent=Msa0434900-mRNA-1 |
| chr3_2 | CDS | 87930530 | 87930623 | 87930530 | ID=Msa0434900-mRNA-1:cds;Parent=Msa0434900-mRNA-1 |
| chr3_2 | CDS | 87930950 | 87931153 | 87930950 | ID=Msa0434900-mRNA-1:cds;Parent=Msa0434900-mRNA-1 |
| chr3_2 | CDS | 87931241 | 87931397 | 87931241 | ID=Msa0434900-mRNA-1:cds;Parent=Msa0434900-mRNA-1 |
| chr3_2 | CDS | 87933593 | 87933668 | 87933593 | ID=Msa0434900-mRNA-1:cds;Parent=Msa0434900-mRNA-1 |
| chr3_2 | CDS | 87933778 | 87933912 | 87933778 | ID=Msa0434900-mRNA-1:cds;Parent=Msa0434900-mRNA-1 |
| chr3_2 | CDS | 87934127 | 87934364 | 87934127 | ID=Msa0434900-mRNA-1:cds;Parent=Msa0434900-mRNA-1 |
| chr3_2 | CDS | 87934491 | 87934694 | 87934491 | ID=Msa0434900-mRNA-1:cds;Parent=Msa0434900-mRNA-1 |
| chr3_2 | CDS | 87934848 | 87935014 | 87934848 | ID=Msa0434900-mRNA-1:cds;Parent=Msa0434900-mRNA-1 |
| chr3_2 | three_prime_UTR | 87935015 | 87935288 | 87935015 | ID=Msa0434900-mRNA-1:three_prime_utr;Parent=Msa0434900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
