Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709800 | RDX75818.1 | 67.846 | 622 | 107 | 4 | 1 | 530 | 23 | 643 | 0.0 | 816 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709800 | sp|Q9FUW6|BETV6_BETPN | 74.545 | 275 | 70 | 0 | 256 | 530 | 34 | 308 | 1.31e-148 | 431 |
| Msa0709800 | sp|Q9FUW6|BETV6_BETPN | 68.954 | 306 | 47 | 1 | 1 | 258 | 1 | 306 | 8.97e-140 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709800 | A0A371FBZ4 | 67.846 | 622 | 107 | 4 | 1 | 530 | 23 | 643 | 0.0 | 816 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0384190 | Msa0709800 | 0.969671 | 1.819577e-130 | -8.615850e-47 |
| Msa0434900 | Msa0709800 | 0.995460 | 1.742142e-216 | -8.615850e-47 |
| Msa0478840 | Msa0709800 | 0.948914 | 3.654864e-107 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709800 | MtrunA17_Chr3g0141691 | 94.545 | 275 | 15 | 0 | 256 | 530 | 34 | 308 | 0.0 | 535 |
| Msa0709800 | MtrunA17_Chr3g0141691 | 65.033 | 306 | 59 | 1 | 1 | 258 | 1 | 306 | 8.22e-131 | 383 |
| Msa0709800 | MtrunA17_Chr3g0141681 | 80.195 | 308 | 11 | 1 | 1 | 258 | 1 | 308 | 5.75e-165 | 470 |
| Msa0709800 | MtrunA17_Chr3g0141681 | 74.368 | 277 | 69 | 1 | 256 | 530 | 34 | 310 | 6.67e-146 | 421 |
| Msa0709800 | MtrunA17_Chr3g0144701 | 67.636 | 275 | 89 | 0 | 256 | 530 | 38 | 312 | 1.46e-137 | 400 |
| Msa0709800 | MtrunA17_Chr3g0144701 | 59.934 | 302 | 73 | 1 | 5 | 258 | 9 | 310 | 1.57e-121 | 359 |
| Msa0709800 | MtrunA17_Chr5g0404471 | 65.818 | 275 | 94 | 0 | 256 | 530 | 35 | 309 | 1.10e-128 | 377 |
| Msa0709800 | MtrunA17_Chr5g0404471 | 58.224 | 304 | 79 | 1 | 2 | 257 | 3 | 306 | 2.31e-115 | 343 |
| Msa0709800 | MtrunA17_Chr4g0035131 | 59.636 | 275 | 111 | 0 | 256 | 530 | 74 | 348 | 4.72e-113 | 340 |
| Msa0709800 | MtrunA17_Chr4g0035131 | 52.303 | 304 | 97 | 1 | 3 | 258 | 43 | 346 | 2.51e-102 | 312 |
| Msa0709800 | MtrunA17_Chr4g0035111 | 56.250 | 272 | 119 | 0 | 256 | 527 | 36 | 307 | 3.15e-109 | 328 |
| Msa0709800 | MtrunA17_Chr4g0035111 | 50.000 | 306 | 105 | 1 | 1 | 258 | 3 | 308 | 8.66e-102 | 309 |
| Msa0709800 | MtrunA17_Chr5g0404511 | 56.458 | 271 | 116 | 2 | 261 | 530 | 49 | 318 | 6.62e-101 | 306 |
| Msa0709800 | MtrunA17_Chr5g0404511 | 48.265 | 317 | 104 | 4 | 1 | 258 | 1 | 316 | 2.75e-88 | 274 |
| Msa0709800 | MtrunA17_Chr5g0404481 | 56.089 | 271 | 117 | 2 | 261 | 530 | 49 | 318 | 1.71e-100 | 306 |
| Msa0709800 | MtrunA17_Chr5g0404481 | 47.950 | 317 | 105 | 4 | 1 | 258 | 1 | 316 | 6.50e-88 | 273 |
| Msa0709800 | MtrunA17_Chr4g0035121 | 49.097 | 277 | 139 | 1 | 256 | 530 | 33 | 309 | 3.35e-91 | 281 |
| Msa0709800 | MtrunA17_Chr4g0035121 | 40.656 | 305 | 131 | 2 | 3 | 257 | 2 | 306 | 1.46e-68 | 223 |
| Msa0709800 | MtrunA17_Chr8g0369391 | 47.407 | 270 | 135 | 3 | 267 | 530 | 44 | 312 | 3.73e-75 | 240 |
| Msa0709800 | MtrunA17_Chr8g0369391 | 37.662 | 308 | 137 | 4 | 3 | 256 | 2 | 308 | 7.98e-59 | 197 |
| Msa0709800 | MtrunA17_Chr5g0409651 | 46.097 | 269 | 137 | 3 | 267 | 529 | 44 | 310 | 6.39e-74 | 237 |
| Msa0709800 | MtrunA17_Chr5g0409651 | 37.987 | 308 | 133 | 5 | 4 | 256 | 3 | 307 | 2.59e-59 | 199 |
| Msa0709800 | MtrunA17_Chr5g0409641 | 46.617 | 266 | 134 | 3 | 267 | 526 | 44 | 307 | 4.17e-73 | 234 |
| Msa0709800 | MtrunA17_Chr5g0409641 | 37.987 | 308 | 133 | 5 | 4 | 256 | 3 | 307 | 6.22e-58 | 195 |
| Msa0709800 | MtrunA17_Chr3g0078901 | 42.066 | 271 | 152 | 3 | 260 | 530 | 40 | 305 | 2.00e-72 | 233 |
| Msa0709800 | MtrunA17_Chr3g0078901 | 37.954 | 303 | 140 | 4 | 2 | 258 | 3 | 303 | 1.20e-62 | 207 |
| Msa0709800 | MtrunA17_Chr3g0078831 | 42.264 | 265 | 148 | 3 | 266 | 530 | 46 | 305 | 2.91e-67 | 219 |
| Msa0709800 | MtrunA17_Chr3g0078831 | 37.954 | 303 | 140 | 4 | 2 | 258 | 3 | 303 | 1.47e-59 | 199 |
| Msa0709800 | MtrunA17_Chr1g0198771 | 38.202 | 267 | 163 | 1 | 266 | 530 | 52 | 318 | 3.61e-59 | 199 |
| Msa0709800 | MtrunA17_Chr1g0198771 | 31.290 | 310 | 162 | 3 | 4 | 263 | 13 | 321 | 1.27e-46 | 166 |
| Msa0709800 | MtrunA17_Chr3g0078941 | 42.927 | 205 | 112 | 3 | 326 | 530 | 12 | 211 | 1.34e-51 | 175 |
| Msa0709800 | MtrunA17_Chr3g0078941 | 33.000 | 200 | 87 | 3 | 104 | 258 | 12 | 209 | 5.14e-27 | 108 |
| Msa0709800 | MtrunA17_Chr3g0078951 | 50.000 | 106 | 49 | 3 | 2 | 106 | 3 | 105 | 4.16e-22 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709800 | AT4G39230.1 | 66.909 | 275 | 91 | 0 | 256 | 530 | 34 | 308 | 1.98e-133 | 390 |
| Msa0709800 | AT4G39230.1 | 60.131 | 306 | 74 | 1 | 1 | 258 | 1 | 306 | 2.04e-121 | 359 |
| Msa0709800 | AT1G75280.1 | 65.217 | 276 | 93 | 2 | 256 | 529 | 35 | 309 | 3.82e-125 | 369 |
| Msa0709800 | AT1G75280.1 | 62.171 | 304 | 64 | 2 | 3 | 256 | 4 | 306 | 3.14e-119 | 353 |
| Msa0709800 | AT1G75290.1 | 63.768 | 276 | 98 | 1 | 256 | 529 | 35 | 310 | 2.59e-124 | 367 |
| Msa0709800 | AT1G75290.1 | 56.393 | 305 | 83 | 1 | 2 | 256 | 3 | 307 | 2.30e-112 | 336 |
| Msa0709800 | AT1G75290.2 | 63.768 | 276 | 98 | 1 | 256 | 529 | 62 | 337 | 1.49e-123 | 366 |
| Msa0709800 | AT1G75290.2 | 56.393 | 305 | 83 | 1 | 2 | 256 | 30 | 334 | 1.53e-111 | 335 |
| Msa0709800 | AT1G75300.1 | 57.241 | 290 | 105 | 3 | 256 | 529 | 35 | 321 | 4.46e-109 | 328 |
| Msa0709800 | AT1G75300.1 | 45.426 | 317 | 112 | 5 | 3 | 258 | 4 | 320 | 1.85e-73 | 236 |
| Msa0709800 | AT1G19540.1 | 57.348 | 279 | 115 | 2 | 256 | 530 | 32 | 310 | 1.88e-103 | 313 |
| Msa0709800 | AT1G19540.1 | 50.654 | 306 | 99 | 2 | 5 | 258 | 3 | 308 | 2.19e-93 | 287 |
| Msa0709800 | AT4G34540.1 | 47.636 | 275 | 139 | 1 | 256 | 530 | 37 | 306 | 1.95e-87 | 272 |
| Msa0709800 | AT4G34540.1 | 39.604 | 303 | 130 | 2 | 3 | 257 | 6 | 303 | 4.72e-66 | 216 |
| Msa0709800 | AT1G19540.2 | 59.375 | 224 | 87 | 2 | 256 | 475 | 32 | 255 | 1.59e-82 | 258 |
| Msa0709800 | AT1G19540.2 | 50.593 | 253 | 73 | 2 | 5 | 205 | 3 | 255 | 8.88e-71 | 227 |
| Msa0709800 | AT4G13660.1 | 44.322 | 273 | 144 | 3 | 264 | 530 | 47 | 317 | 3.77e-67 | 220 |
| Msa0709800 | AT4G13660.1 | 36.570 | 309 | 140 | 4 | 2 | 256 | 7 | 313 | 5.86e-54 | 185 |
| Msa0709800 | AT4G13660.2 | 44.322 | 273 | 144 | 3 | 264 | 530 | 47 | 317 | 3.77e-67 | 220 |
| Msa0709800 | AT4G13660.2 | 36.570 | 309 | 140 | 4 | 2 | 256 | 7 | 313 | 5.86e-54 | 185 |
| Msa0709800 | AT1G32100.1 | 43.333 | 270 | 145 | 3 | 267 | 530 | 50 | 317 | 5.40e-67 | 219 |
| Msa0709800 | AT1G32100.1 | 35.714 | 308 | 142 | 4 | 3 | 256 | 8 | 313 | 6.71e-52 | 179 |
Find 140 sgRNAs with CRISPR-Local
Find 430 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATAGCACGTCGAATTT+TGG | 0.137471 | 5_1:+916798 | None:intergenic |
| CACGACTATGGGTGTTAATT+TGG | 0.229530 | 5_1:-913769 | Msa0709800:CDS |
| AACATTACCAGTCTCTTTAA+TGG | 0.235620 | 5_1:+913523 | None:intergenic |
| GCTCGGAATATTGTGTAATA+TGG | 0.236564 | 5_1:-912211 | Msa0709800:three_prime_UTR |
| TTGAATGAATAAATGTTCTT+TGG | 0.240740 | 5_1:+916368 | None:intergenic |
| TTTGAGATTGAGCCTTCTTT+TGG | 0.245864 | 5_1:-912502 | Msa0709800:CDS |
| TGAATGAATAAATGTTCTTT+GGG | 0.284153 | 5_1:+916369 | None:intergenic |
| CTCAATAATTTCAAAACTTT+AGG | 0.291956 | 5_1:-918186 | Msa0709800:CDS |
| CCTCCACAATTTCACGACTA+TGG | 0.294665 | 5_1:-913781 | Msa0709800:CDS |
| GTTGGTAGATACATAGGTAT+AGG | 0.311190 | 5_1:+913176 | None:intergenic |
| GAAGATTATCGCTGCAATTA+AGG | 0.319373 | 5_1:-917857 | Msa0709800:CDS |
| ATTTGCAGCTGTCTTCAATA+AGG | 0.334657 | 5_1:-912938 | Msa0709800:intron |
| CAAAACTTTAGGCGTCAATT+TGG | 0.338853 | 5_1:-918175 | Msa0709800:CDS |
| ATGATACGATGCTTGAGTTT+TGG | 0.341179 | 5_1:-912155 | Msa0709800:three_prime_UTR |
| GTTGAATGAGTAAATGTTCT+TGG | 0.342329 | 5_1:+912837 | None:intergenic |
| GTATCTACCAACTCCTTTGC+TGG | 0.357028 | 5_1:-913165 | Msa0709800:CDS |
| TTTGTGATTGAGCCATCTTT+TGG | 0.365839 | 5_1:-916098 | Msa0709800:CDS |
| GAATCGATCGAAAGTAATTA+AGG | 0.367927 | 5_1:-918378 | Msa0709800:five_prime_UTR |
| GCCTTGTGGGAGAAGAAGAT+TGG | 0.369735 | 5_1:-912805 | Msa0709800:CDS |
| ACAGTTGTGTACTTGACATC+TGG | 0.375136 | 5_1:+916053 | None:intergenic |
| GCCTTGTGGGAGAAGAAGAT+TGG | 0.381870 | 5_1:-916335 | Msa0709800:CDS |
| TGGATCATCCACAGCTCTAA+TGG | 0.384230 | 5_1:+916424 | None:intergenic |
| GTGGAGGAGCTTAGCCTTGG+TGG | 0.402912 | 5_1:+913797 | None:intergenic |
| TAAAGAGACTGGTAATGTTA+AGG | 0.403410 | 5_1:-913519 | Msa0709800:intron |
| ATCGATAATACCACGTTGAT+TGG | 0.408391 | 5_1:+916158 | None:intergenic |
| TCACACACATGCTGCTGATC+AGG | 0.417659 | 5_1:-913561 | Msa0709800:CDS |
| ATCGAAAGTAATTAAGGATC+AGG | 0.420974 | 5_1:-918372 | Msa0709800:five_prime_UTR |
| ATTGCTAATCCTACATTGTC+TGG | 0.420981 | 5_1:+912562 | None:intergenic |
| ATGTCGAATTTGTACTTTCA+CGG | 0.422437 | 5_1:+913221 | None:intergenic |
| AAGAGACAAAGTCATTATCT+TGG | 0.430812 | 5_1:-913097 | Msa0709800:CDS |
| AGAATCTTATTCAATGTCCT+TGG | 0.431387 | 5_1:+916404 | None:intergenic |
| CAACGAGCTTGTAGCCTTGT+GGG | 0.437114 | 5_1:-916348 | Msa0709800:CDS |
| AAACTTCTCAAGGATATTCA+AGG | 0.440563 | 5_1:-916278 | Msa0709800:intron |
| TTGAATGAGTAAATGTTCTT+GGG | 0.442585 | 5_1:+912838 | None:intergenic |
| TAATAGAGGATAAACTTCTC+AGG | 0.447457 | 5_1:-912759 | Msa0709800:CDS |
| TGGAGGAGCTTAGCCTTGGT+GGG | 0.448790 | 5_1:+913798 | None:intergenic |
| TAAGGAGGCTGGTAACGTTA+AGG | 0.454571 | 5_1:-917839 | Msa0709800:intron |
| TTGAGGAGATTAGCCTTGGC+AGG | 0.461709 | 5_1:+918204 | None:intergenic |
| CTTGGTGGACCTGTAGCTCC+AGG | 0.463568 | 5_1:+913117 | None:intergenic |
| AGAGTGGTGTAGTTGACATC+CGG | 0.463970 | 5_1:+912457 | None:intergenic |
| AATCCTACATTGTCTGGAAA+AGG | 0.466589 | 5_1:+912568 | None:intergenic |
| CAACGATGTTATCGCCTTGT+GGG | 0.467739 | 5_1:-912818 | Msa0709800:CDS |
| AATACCACGTTGATTGGAAT+AGG | 0.469491 | 5_1:+916164 | None:intergenic |
| TTTGTCCAACCTGGAGCTAC+AGG | 0.481668 | 5_1:-913126 | Msa0709800:CDS |
| TCCTTGAGAAGTTTATCCTC+TGG | 0.484267 | 5_1:+916287 | None:intergenic |
| GATCAGCGAGGGTGGATTCA+CGG | 0.492277 | 5_1:+918226 | None:intergenic |
| AGAAGGCTCAATCTCAAAGT+TGG | 0.492703 | 5_1:+912507 | None:intergenic |
| ATCGCTGCCATTAAAGAGAC+TGG | 0.495657 | 5_1:-913530 | Msa0709800:CDS |
| CTCCACAATTTCACGACTAT+GGG | 0.495937 | 5_1:-913780 | Msa0709800:CDS |
| AGAGACAAAGTCATTATCTT+GGG | 0.498507 | 5_1:-913096 | Msa0709800:CDS |
| CACCCATAGTCGTGAAATTG+TGG | 0.499376 | 5_1:+913778 | None:intergenic |
| CCAGCAAAATCTGCATTTGA+AGG | 0.504040 | 5_1:-916826 | Msa0709800:CDS |
| ATAATGACTTTGTCTCTTGG+TGG | 0.505831 | 5_1:+913102 | None:intergenic |
| TTGGTAGATACATAGGTATA+GGG | 0.507969 | 5_1:+913177 | None:intergenic |
| AGCCTTGGTGGGGTCAGACA+TGG | 0.508905 | 5_1:+913809 | None:intergenic |
| TTCACGGACCAATGCAAAAG+TGG | 0.510674 | 5_1:+918242 | None:intergenic |
| TACTTCAAACGAACTGATCA+AGG | 0.512935 | 5_1:+916021 | None:intergenic |
| AAGATAATGACTTTGTCTCT+TGG | 0.516542 | 5_1:+913099 | None:intergenic |
| ATCGCTGCAATTAAGGAGGC+TGG | 0.516620 | 5_1:-917850 | Msa0709800:CDS |
| ATTCTCAAATGAAATGATCA+AGG | 0.517748 | 5_1:+912425 | None:intergenic |
| GTAGAAGCAAGTGCAAAAGC+TGG | 0.517859 | 5_1:-918270 | Msa0709800:CDS |
| GGTAGGCCACGCTCTGATTG+AGG | 0.518193 | 5_1:-917887 | Msa0709800:CDS |
| ATTATTGAGGAGATTAGCCT+TGG | 0.522079 | 5_1:+918200 | None:intergenic |
| TCCAGAGGATAAACTTCTCA+AGG | 0.522426 | 5_1:-916288 | Msa0709800:CDS |
| CCTTGTGGGAGAAGAAGATT+GGG | 0.523149 | 5_1:-916334 | Msa0709800:CDS |
| TAACACACGCGTTGCATCCA+TGG | 0.523365 | 5_1:-918349 | Msa0709800:exon |
| CCTTGTGGGAGAAGAAGATT+GGG | 0.523799 | 5_1:-912804 | Msa0709800:CDS |
| CACCACTCGGTGTTTGTGAA+AGG | 0.525734 | 5_1:-916134 | Msa0709800:CDS |
| AAACTTCTCAGGGATATTGA+AGG | 0.530402 | 5_1:-912748 | Msa0709800:intron |
| GAAGCCTCAACCCCAAAAGA+AGG | 0.535959 | 5_1:+912490 | None:intergenic |
| CCCAATCTTCTTCTCCCACA+AGG | 0.539941 | 5_1:+912804 | None:intergenic |
| TAAGCCTCAACCCCAAAAGA+TGG | 0.540084 | 5_1:+916086 | None:intergenic |
| TCTCTACGATAATGAGAGCT+TGG | 0.541283 | 5_1:-913627 | Msa0709800:CDS |
| AAAGGAGTTGGTAGATACAT+AGG | 0.542824 | 5_1:+913170 | None:intergenic |
| CCCAATCTTCTTCTCCCACA+AGG | 0.547082 | 5_1:+916334 | None:intergenic |
| TTCAATAAGGAAGAAGACAT+TGG | 0.551282 | 5_1:-912925 | Msa0709800:CDS |
| TCAACGATGTTATCGCCTTG+TGG | 0.553409 | 5_1:-912819 | Msa0709800:CDS |
| TACGAATAATGACAATTGCT+CGG | 0.554046 | 5_1:-912228 | Msa0709800:three_prime_UTR |
| CAGTTGTGTACTTGACATCT+GGG | 0.555264 | 5_1:+916054 | None:intergenic |
| GTACCAACATTTGTCCAACC+TGG | 0.556184 | 5_1:-913135 | Msa0709800:CDS |
| GGAGGAGCTTAGCCTTGGTG+GGG | 0.557357 | 5_1:+913799 | None:intergenic |
| AAAATAACCAGCAAAGGAGT+TGG | 0.560210 | 5_1:+913158 | None:intergenic |
| CGACATATGATTGAAGCTGA+AGG | 0.561768 | 5_1:-913204 | Msa0709800:CDS |
| TGAGGCTTCTGCTTTATACC+CGG | 0.563811 | 5_1:-912476 | Msa0709800:CDS |
| TCAACGAGCTTGTAGCCTTG+TGG | 0.567546 | 5_1:-916349 | Msa0709800:CDS |
| GAATGAATAAATGTTCTTTG+GGG | 0.568027 | 5_1:+916370 | None:intergenic |
| AATGAATAAATGTTCTTTGG+GGG | 0.568257 | 5_1:+916371 | None:intergenic |
| TCTGTATGATCATGAGAACT+TGG | 0.570219 | 5_1:-917947 | Msa0709800:CDS |
| GAGTGGTGTAGTTGACATCC+GGG | 0.579953 | 5_1:+912458 | None:intergenic |
| ACGTCGTTCCCAAATTCTGA+AGG | 0.580113 | 5_1:+913285 | None:intergenic |
| AACATTCACCATTAGAGCTG+TGG | 0.581419 | 5_1:-916432 | Msa0709800:CDS |
| AAAGTCATTATCTTGGGTGA+TGG | 0.581506 | 5_1:-913090 | Msa0709800:CDS |
| GTGGACCTGTAGCTCCAGGT+TGG | 0.581878 | 5_1:+913121 | None:intergenic |
| AGTAATCAAGCAGGTAGATG+TGG | 0.585296 | 5_1:-917920 | Msa0709800:CDS |
| GGTAGATGTGGTCATATCTA+CGG | 0.586142 | 5_1:-917908 | Msa0709800:CDS |
| CTTGGTGAAAGTAATCAAGC+AGG | 0.588181 | 5_1:-917929 | Msa0709800:CDS |
| CGACAGAGGTGGATCAGTTG+TGG | 0.590006 | 5_1:+912326 | None:intergenic |
| GCTCCAGGTTGGACAAATGT+TGG | 0.594940 | 5_1:+913132 | None:intergenic |
| CACCCTCGCTGATCCTGCCA+AGG | 0.595340 | 5_1:-918217 | Msa0709800:CDS |
| AATGAGTAAATGTTCTTGGG+AGG | 0.600435 | 5_1:+912841 | None:intergenic |
| GGTATTATCGATCCACCACT+CGG | 0.602530 | 5_1:-916147 | Msa0709800:CDS |
| TTAAAGCTGTGGATGATCCA+AGG | 0.604389 | 5_1:-912891 | Msa0709800:CDS |
| CAGCAAAATCTGCATTTGAA+GGG | 0.606294 | 5_1:-916825 | Msa0709800:CDS |
| TGGTACAAAATAACCAGCAA+AGG | 0.607224 | 5_1:+913152 | None:intergenic |
| ATTGTGGAGGAGCTTAGCCT+TGG | 0.614967 | 5_1:+913794 | None:intergenic |
| GGATGTCAACTACACCACTC+TGG | 0.615304 | 5_1:-912455 | Msa0709800:CDS |
| AATAGAGGATAAACTTCTCA+GGG | 0.615441 | 5_1:-912758 | Msa0709800:CDS |
| AACCTACACTATTAAAGCTG+TGG | 0.616425 | 5_1:-912902 | Msa0709800:CDS |
| TTAGAGCTGTGGATGATCCA+AGG | 0.628287 | 5_1:-916421 | Msa0709800:CDS |
| CTTTCACAAACACCGAGTGG+TGG | 0.628695 | 5_1:+916135 | None:intergenic |
| TCACGGACCAATGCAAAAGT+GGG | 0.629925 | 5_1:+918243 | None:intergenic |
| TTCAACAAGGAAGATGACAT+TGG | 0.630695 | 5_1:-916455 | Msa0709800:CDS |
| CTTGGCAGGATCAGCGAGGG+TGG | 0.631457 | 5_1:+918218 | None:intergenic |
| CGTCGTTCCCAAATTCTGAA+GGG | 0.635524 | 5_1:+913286 | None:intergenic |
| GCTCAATCTCAAAGTTGGTG+TGG | 0.637181 | 5_1:+912512 | None:intergenic |
| ATCCACAGCTTTAATAGTGT+AGG | 0.637952 | 5_1:+912900 | None:intergenic |
| TTCAGAATTTGGGAACGACG+TGG | 0.641605 | 5_1:-913283 | Msa0709800:CDS |
| AAATGTTCTTGGGAGGTCTG+AGG | 0.641726 | 5_1:+912848 | None:intergenic |
| ACGTCATTCCCAAATTCCGA+AGG | 0.641793 | 5_1:+916871 | None:intergenic |
| ATCGGAGGAACAGGTTACAT+CGG | 0.642196 | 5_1:-918303 | Msa0709800:CDS |
| GATGTGGTCATATCTACGGT+AGG | 0.649142 | 5_1:-917904 | Msa0709800:CDS |
| CTTGATCCTCAATCAGAGCG+TGG | 0.652635 | 5_1:+917881 | None:intergenic |
| ATGTACAGCGGTGTTCAACA+AGG | 0.653602 | 5_1:-916468 | Msa0709800:intron |
| TAAGAAGCAATAAGCGACAG+AGG | 0.658226 | 5_1:+912312 | None:intergenic |
| TGACGTTGATCGTGTCCATG+CGG | 0.662937 | 5_1:-916854 | Msa0709800:CDS |
| AGCCTTGGCAGGATCAGCGA+GGG | 0.665918 | 5_1:+918215 | None:intergenic |
| TGTCACTCAGTGTTTGTGAA+AGG | 0.666291 | 5_1:-912538 | Msa0709800:CDS |
| TAGTCGGTGGTAACATACTG+AGG | 0.666775 | 5_1:+912185 | None:intergenic |
| GATTATCGCTGCAATTAAGG+AGG | 0.668758 | 5_1:-917854 | Msa0709800:CDS |
| AGCAATGAAGCAAGTAGACG+TGG | 0.672283 | 5_1:-913600 | Msa0709800:CDS |
| GAAGCAATAAGCGACAGAGG+TGG | 0.674095 | 5_1:+912315 | None:intergenic |
| TGTCAACTACACCACTCTGG+AGG | 0.681149 | 5_1:-912452 | Msa0709800:CDS |
| CCATAGTCGTGAAATTGTGG+AGG | 0.682789 | 5_1:+913781 | None:intergenic |
| CACCTTTCACAAACACCGAG+TGG | 0.683877 | 5_1:+916132 | None:intergenic |
| AACCATGTCTGACCCCACCA+AGG | 0.684946 | 5_1:-913811 | Msa0709800:CDS |
| ATCAAGGCATTCCTCCAGAG+TGG | 0.685958 | 5_1:+912441 | None:intergenic |
| AGATGTCAAGTACACAACTG+TGG | 0.707472 | 5_1:-916051 | Msa0709800:CDS |
| TAGCCTTGGCAGGATCAGCG+AGG | 0.707487 | 5_1:+918214 | None:intergenic |
| TGTCAAGTACACAACTGTGG+AGG | 0.712034 | 5_1:-916048 | Msa0709800:CDS |
| GGCTCCTATTCCAATCAACG+TGG | 0.763745 | 5_1:-916168 | Msa0709800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATATATAAATATTA+GGG | + | chr5_1:915734-915753 | None:intergenic | 0.0% |
| !!! | TTTTTTTATATATAAATATT+AGG | + | chr5_1:915735-915754 | None:intergenic | 0.0% |
| !!! | TTTTATTTATTATAATAAAA+TGG | - | chr5_1:916018-916037 | Msa0709800:intron | 0.0% |
| !! | TAATAATATTAAGTTTGAAA+TGG | - | chr5_1:912593-912612 | Msa0709800:intron | 10.0% |
| !! | TCTATAATATAATATAATTC+TGG | - | chr5_1:912784-912803 | Msa0709800:CDS | 10.0% |
| !!! | GAATAGTTTTATTTTTTTTA+AGG | - | chr5_1:913411-913430 | Msa0709800:intron | 10.0% |
| !!! | AAATAGTTTTATTTTTTTTG+AGG | - | chr5_1:913444-913463 | Msa0709800:intron | 10.0% |
| !!! | AATAGTTTTATTTTTTTTGA+GGG | - | chr5_1:913445-913464 | Msa0709800:intron | 10.0% |
| !! | TTAGATAGAAAATTAAATAA+AGG | - | chr5_1:915631-915650 | Msa0709800:intron | 10.0% |
| !! | TTGTTATAAATTATATACAT+AGG | - | chr5_1:915793-915812 | Msa0709800:intron | 10.0% |
| !!! | TATTAGAAAGTTTTTTTTAA+GGG | + | chr5_1:916081-916100 | None:intergenic | 10.0% |
| !!! | TTATTAGAAAGTTTTTTTTA+AGG | + | chr5_1:916082-916101 | None:intergenic | 10.0% |
| !! | AATATCATTTGTTTATTTAT+TGG | + | chr5_1:916490-916509 | None:intergenic | 10.0% |
| !!! | TATTACATAAAATTTTTCAA+GGG | + | chr5_1:917811-917830 | None:intergenic | 10.0% |
| !! | CTAATGTTTATATTTAAATA+TGG | - | chr5_1:917953-917972 | Msa0709800:CDS | 10.0% |
| !! | AATCAAATTCATTAAAAAAG+TGG | + | chr5_1:912462-912481 | None:intergenic | 15.0% |
| !! | AAAAATGTGAAAAAGAAAAA+GGG | + | chr5_1:913035-913054 | None:intergenic | 15.0% |
| !! | AAAAAATGTGAAAAAGAAAA+AGG | + | chr5_1:913036-913055 | None:intergenic | 15.0% |
| !!! | ATTTTTTAAGAAAAGTTGTT+AGG | - | chr5_1:913049-913068 | Msa0709800:intron | 15.0% |
| !!! | TTTTTTAAGAAAAGTTGTTA+GGG | - | chr5_1:913050-913069 | Msa0709800:intron | 15.0% |
| !! | ACTTTACATATTATCAATTA+GGG | - | chr5_1:913142-913161 | Msa0709800:CDS | 15.0% |
| !!! | ATAGTTTTATTTTTTTTGAG+GGG | - | chr5_1:913446-913465 | Msa0709800:intron | 15.0% |
| !! | AATATAATCAGAATATTAGT+TGG | + | chr5_1:913504-913523 | None:intergenic | 15.0% |
| !!! | CTGATTATATTTTTCAATAA+AGG | - | chr5_1:913513-913532 | Msa0709800:intron | 15.0% |
| !!! | TTTAATTTGAGAGTTTTTAA+GGG | + | chr5_1:913636-913655 | None:intergenic | 15.0% |
| !!! | ACCTTTTTTGAATATTATTT+GGG | + | chr5_1:914700-914719 | None:intergenic | 15.0% |
| !!! | AACCTTTTTTGAATATTATT+TGG | + | chr5_1:914701-914720 | None:intergenic | 15.0% |
| !! | AATAAATATAGAGAAACAAA+AGG | - | chr5_1:915396-915415 | Msa0709800:intron | 15.0% |
| !! | ATAAATATAGAGAAACAAAA+GGG | - | chr5_1:915397-915416 | Msa0709800:intron | 15.0% |
| !! | ATACTTTAACAGATATTAAA+CGG | - | chr5_1:915584-915603 | Msa0709800:intron | 15.0% |
| !! | TGATATTTCAACAAAATTTA+AGG | - | chr5_1:915691-915710 | Msa0709800:intron | 15.0% |
| !! | GATATTTCAACAAAATTTAA+GGG | - | chr5_1:915692-915711 | Msa0709800:intron | 15.0% |
| !! | CAATAAAAAAGAGAAAAAAA+AGG | + | chr5_1:916242-916261 | None:intergenic | 15.0% |
| !!! | CTTTTTTTTCTCTTTTTTAT+TGG | - | chr5_1:916240-916259 | Msa0709800:intron | 15.0% |
| !! | GTTCAAAAATTATTATGAAA+TGG | - | chr5_1:916331-916350 | Msa0709800:CDS | 15.0% |
| !! | AACAAAAATACTAAATAGAT+AGG | + | chr5_1:916385-916404 | None:intergenic | 15.0% |
| !! | AGAGATAAAAATAAAATATG+AGG | + | chr5_1:916545-916564 | None:intergenic | 15.0% |
| !!! | AAACAAAAAAACTTTGATTT+TGG | - | chr5_1:917185-917204 | Msa0709800:intron | 15.0% |
| !!! | CTATTACATAAAATTTTTCA+AGG | + | chr5_1:917812-917831 | None:intergenic | 15.0% |
| !!! | TGAAAAATTTTATGTAATAG+AGG | - | chr5_1:917812-917831 | Msa0709800:intron | 15.0% |
| !! | TTGAAGAGAAATTTATAAAA+AGG | - | chr5_1:917906-917925 | Msa0709800:CDS | 15.0% |
| !! | TGAAGAGAAATTTATAAAAA+GGG | - | chr5_1:917907-917926 | Msa0709800:CDS | 15.0% |
| !! | ATCTTAAAAAAAAAGAAACT+TGG | + | chr5_1:918332-918351 | None:intergenic | 15.0% |
| !!! | CTAAAGTTTTGAAATTATTG+AGG | + | chr5_1:912401-912420 | None:intergenic | 20.0% |
| !! | CTCAATAATTTCAAAACTTT+AGG | - | chr5_1:912399-912418 | Msa0709800:three_prime_UTR | 20.0% |
| !! | AAATTCATTAAAAAAGTGGA+AGG | + | chr5_1:912458-912477 | None:intergenic | 20.0% |
| !! | ATATTGTGTTTGTATATCAT+TGG | - | chr5_1:912569-912588 | Msa0709800:CDS | 20.0% |
| !! | AATGGTAATTAAATTATTGC+AGG | - | chr5_1:912611-912630 | Msa0709800:intron | 20.0% |
| !! | ATGGTAATTAAATTATTGCA+GGG | - | chr5_1:912612-912631 | Msa0709800:intron | 20.0% |
| !! | AAAATGTGAAAAAGAAAAAG+GGG | + | chr5_1:913034-913053 | None:intergenic | 20.0% |
| !! | TTTAATACACATACAAACAA+AGG | + | chr5_1:913118-913137 | None:intergenic | 20.0% |
| !! | GACTTTACATATTATCAATT+AGG | - | chr5_1:913141-913160 | Msa0709800:CDS | 20.0% |
| !! | CTTTACATATTATCAATTAG+GGG | - | chr5_1:913143-913162 | Msa0709800:CDS | 20.0% |
| !! | ATGCATCTAGTAATTTAATA+AGG | - | chr5_1:913189-913208 | Msa0709800:CDS | 20.0% |
| !! | TAATAAGGAGTTTACATTTA+AGG | - | chr5_1:913204-913223 | Msa0709800:CDS | 20.0% |
| !! | AGGACAAATATAAAATCAAA+TGG | - | chr5_1:913224-913243 | Msa0709800:CDS | 20.0% |
| !! | AAAAATAGTTAGTACTACTA+CGG | - | chr5_1:913474-913493 | Msa0709800:intron | 20.0% |
| !!! | GTTTAATTTGAGAGTTTTTA+AGG | + | chr5_1:913637-913656 | None:intergenic | 20.0% |
| !!! | TCATTTTCTTAAATCATTAC+CGG | + | chr5_1:913974-913993 | None:intergenic | 20.0% |
| !! | TGAATGAATAAATGTTCTTT+GGG | + | chr5_1:914219-914238 | None:intergenic | 20.0% |
| !! | TTGAATGAATAAATGTTCTT+TGG | + | chr5_1:914220-914239 | None:intergenic | 20.0% |
| !! | ACCCAAATAATATTCAAAAA+AGG | - | chr5_1:914696-914715 | Msa0709800:intron | 20.0% |
| !!! | ATCCATTAAATTTAATTTGC+CGG | - | chr5_1:914943-914962 | Msa0709800:intron | 20.0% |
| !! | GTTATAGTACATGTTATTAT+TGG | + | chr5_1:914970-914989 | None:intergenic | 20.0% |
| !!! | ATGTCGATTTTATAAAACTT+GGG | + | chr5_1:915018-915037 | None:intergenic | 20.0% |
| !!! | AATGTCGATTTTATAAAACT+TGG | + | chr5_1:915019-915038 | None:intergenic | 20.0% |
| !! | ATTAAAGAGTTGAAATAAGA+AGG | - | chr5_1:915316-915335 | Msa0709800:intron | 20.0% |
| !! | TTAAAGAGTTGAAATAAGAA+GGG | - | chr5_1:915317-915336 | Msa0709800:intron | 20.0% |
| !!! | TACAATTTTAAAGCAAATCT+AGG | - | chr5_1:915355-915374 | Msa0709800:intron | 20.0% |
| !! | GAACAAAAAAAAAGATTAAG+TGG | - | chr5_1:915448-915467 | Msa0709800:intron | 20.0% |
| !! | AAAAAAGATTAAGTGGAAAA+TGG | - | chr5_1:915455-915474 | Msa0709800:intron | 20.0% |
| !! | GATAGAAAATTAAATAAAGG+AGG | - | chr5_1:915634-915653 | Msa0709800:intron | 20.0% |
| !! | TGTTTGATTAAAAAATAGAG+AGG | - | chr5_1:915661-915680 | Msa0709800:intron | 20.0% |
| !! | GTTTGATTAAAAAATAGAGA+GGG | - | chr5_1:915662-915681 | Msa0709800:intron | 20.0% |
| !! | TTATGGTTAGAAATTTAGAA+GGG | + | chr5_1:915867-915886 | None:intergenic | 20.0% |
| !!! | GTATTTTTGTTTTTTCTTGT+TGG | - | chr5_1:916394-916413 | Msa0709800:CDS | 20.0% |
| !! | GGTAAATAAATGTAATATGT+AGG | + | chr5_1:916584-916603 | None:intergenic | 20.0% |
| !! | ATATAAGGTAAATTAAGAGT+GGG | + | chr5_1:916862-916881 | None:intergenic | 20.0% |
| !! | AATATAAGGTAAATTAAGAG+TGG | + | chr5_1:916863-916882 | None:intergenic | 20.0% |
| !! | TGGTGATATACTATAATATA+AGG | + | chr5_1:916877-916896 | None:intergenic | 20.0% |
| !! | AACAATTTAAACAATGTCTT+TGG | + | chr5_1:917232-917251 | None:intergenic | 20.0% |
| !! | GAGTATAAAATTTATGAAGA+GGG | - | chr5_1:917929-917948 | Msa0709800:CDS | 20.0% |
| !! | AAAAGCAAGATTTTGTTCAT+CGG | - | chr5_1:912264-912283 | Msa0709800:three_prime_UTR | 25.0% |
| ! | TGGTAATTAAATTATTGCAG+GGG | - | chr5_1:912613-912632 | Msa0709800:intron | 25.0% |
| ! | CATTTGGATTATGACTAAAT+GGG | + | chr5_1:912895-912914 | None:intergenic | 25.0% |
| ! | TCATTTGGATTATGACTAAA+TGG | + | chr5_1:912896-912915 | None:intergenic | 25.0% |
| ! | AGTATATGAAAATGTTTGCA+AGG | + | chr5_1:913387-913406 | None:intergenic | 25.0% |
| ! | TATTTCTTGTATATGTACAG+CGG | - | chr5_1:914105-914124 | Msa0709800:intron | 25.0% |
| ! | AATGAATAAATGTTCTTTGG+GGG | + | chr5_1:914217-914236 | None:intergenic | 25.0% |
| ! | GAATGAATAAATGTTCTTTG+GGG | + | chr5_1:914218-914237 | None:intergenic | 25.0% |
| !! | ATATGAGTTGTTTGTTACTT+TGG | - | chr5_1:914616-914635 | Msa0709800:intron | 25.0% |
| !!! | TTTCATTTGCTATGTAAACT+TGG | - | chr5_1:914662-914681 | Msa0709800:intron | 25.0% |
| ! | ACATTGAACAAATGGAATTT+AGG | - | chr5_1:914877-914896 | Msa0709800:intron | 25.0% |
| ! | CATTGAACAAATGGAATTTA+GGG | - | chr5_1:914878-914897 | Msa0709800:intron | 25.0% |
| ! | ATTGAACAAATGGAATTTAG+GGG | - | chr5_1:914879-914898 | Msa0709800:intron | 25.0% |
| !!! | TCCATTAAATTTAATTTGCC+GGG | - | chr5_1:914944-914963 | Msa0709800:intron | 25.0% |
| !! | TGCTTTTACAAATAATAGAG+GGG | + | chr5_1:915047-915066 | None:intergenic | 25.0% |
| !! | GTGCTTTTACAAATAATAGA+GGG | + | chr5_1:915048-915067 | None:intergenic | 25.0% |
| !! | AGTGCTTTTACAAATAATAG+AGG | + | chr5_1:915049-915068 | None:intergenic | 25.0% |
| !!! | GTGATTTTAACAAATGAGTT+TGG | + | chr5_1:915194-915213 | None:intergenic | 25.0% |
| ! | TCGTAAGAAAATTGAACAAA+AGG | + | chr5_1:915242-915261 | None:intergenic | 25.0% |
| !!! | ATGGAAATAGCTTTGAAAAT+AGG | - | chr5_1:915474-915493 | Msa0709800:intron | 25.0% |
| !!! | TGGAAATAGCTTTGAAAATA+GGG | - | chr5_1:915475-915494 | Msa0709800:intron | 25.0% |
| !!! | TATTAAACGGTGTTATTTAG+AGG | - | chr5_1:915597-915616 | Msa0709800:intron | 25.0% |
| !!! | ATTAAACGGTGTTATTTAGA+GGG | - | chr5_1:915598-915617 | Msa0709800:intron | 25.0% |
| ! | ATTTCAACAAAATTTAAGGG+AGG | - | chr5_1:915695-915714 | Msa0709800:intron | 25.0% |
| !!! | CTTTTTTTGACAATTGGAAA+GGG | + | chr5_1:915835-915854 | None:intergenic | 25.0% |
| !!! | TCTTTTTTTGACAATTGGAA+AGG | + | chr5_1:915836-915855 | None:intergenic | 25.0% |
| ! | GTTATGGTTAGAAATTTAGA+AGG | + | chr5_1:915868-915887 | None:intergenic | 25.0% |
| ! | CAAACATATCGATAAATAAG+TGG | + | chr5_1:915928-915947 | None:intergenic | 25.0% |
| ! | AATAAAAGTTCCATCTACAA+TGG | - | chr5_1:916119-916138 | Msa0709800:CDS | 25.0% |
| !! | ATTAGAGTTTGAAATGAGAA+TGG | - | chr5_1:916921-916940 | Msa0709800:intron | 25.0% |
| ! | AAAATATGCAAAAGAAGAAG+AGG | + | chr5_1:917102-917121 | None:intergenic | 25.0% |
| !!! | TTTTTGTTTTTGTTTGAGAG+AGG | + | chr5_1:917174-917193 | None:intergenic | 25.0% |
| ! | ATGCAAATTAAAATACAGTG+AGG | + | chr5_1:917614-917633 | None:intergenic | 25.0% |
| ! | TTGAATGAGTAAATGTTCTT+GGG | + | chr5_1:917750-917769 | None:intergenic | 25.0% |
| ! | GGAGTATAAAATTTATGAAG+AGG | - | chr5_1:917928-917947 | Msa0709800:CDS | 25.0% |
| ! | ATTCTCAAATGAAATGATCA+AGG | + | chr5_1:918163-918182 | None:intergenic | 25.0% |
| !! | TCGTATCATTTTCAAATAGT+CGG | + | chr5_1:918419-918438 | None:intergenic | 25.0% |
| !! | GAAAAAACTCTAAAGCAGTT+TGG | - | chr5_1:912177-912196 | Msa0709800:three_prime_UTR | 30.0% |
| GAATCGATCGAAAGTAATTA+AGG | - | chr5_1:912207-912226 | Msa0709800:three_prime_UTR | 30.0% | |
| ATCGAAAGTAATTAAGGATC+AGG | - | chr5_1:912213-912232 | Msa0709800:three_prime_UTR | 30.0% | |
| TTCATTAAAAAAGTGGAAGG+AGG | + | chr5_1:912455-912474 | None:intergenic | 30.0% | |
| GAGTTAATATTTCCAGCTAA+AGG | + | chr5_1:912545-912564 | None:intergenic | 30.0% | |
| GGTAATTAAATTATTGCAGG+GGG | - | chr5_1:912614-912633 | Msa0709800:intron | 30.0% | |
| AAACCAGAAAAAAGGGTAAA+AGG | + | chr5_1:912834-912853 | None:intergenic | 30.0% | |
| !!! | TTTTACCCTTTTTTCTGGTT+TGG | - | chr5_1:912833-912852 | Msa0709800:CDS | 30.0% |
| TCGTTTGAACACAAAGTTAA+AGG | + | chr5_1:913599-913618 | None:intergenic | 30.0% | |
| !! | TTTGAGAGTTTTTAAGGGTT+CGG | + | chr5_1:913631-913650 | None:intergenic | 30.0% |
| !!! | AGATTTTTTCCTTCGGAATT+TGG | - | chr5_1:913705-913724 | Msa0709800:intron | 30.0% |
| !!! | GATTTTTTCCTTCGGAATTT+GGG | - | chr5_1:913706-913725 | Msa0709800:intron | 30.0% |
| ! | TATATGACGACTTTGTCTTT+TGG | + | chr5_1:913909-913928 | None:intergenic | 30.0% |
| AAAGACAAAGTCGTCATATA+TGG | - | chr5_1:913909-913928 | Msa0709800:intron | 30.0% | |
| !! | CATGTTAGTTTGTTACCTTT+GGG | + | chr5_1:913945-913964 | None:intergenic | 30.0% |
| !! | ACATGTTAGTTTGTTACCTT+TGG | + | chr5_1:913946-913965 | None:intergenic | 30.0% |
| AAGGTAACAAACTAACATGT+TGG | - | chr5_1:913946-913965 | Msa0709800:intron | 30.0% | |
| AGAATCTTATTCAATGTCCT+TGG | + | chr5_1:914184-914203 | None:intergenic | 30.0% | |
| !!! | TGGAAGAAAAGTTTTTTCGA+CGG | + | chr5_1:914281-914300 | None:intergenic | 30.0% |
| AAACTTCTCAAGGATATTCA+AGG | - | chr5_1:914307-914326 | Msa0709800:intron | 30.0% | |
| ! | TATATTCCCTTTTATTGCAG+AGG | - | chr5_1:914396-914415 | Msa0709800:intron | 30.0% |
| ! | TCGATTTTATAAAACTTGGG+AGG | + | chr5_1:915015-915034 | None:intergenic | 30.0% |
| ! | TTTTACAAATAATAGAGGGG+AGG | + | chr5_1:915044-915063 | None:intergenic | 30.0% |
| ! | TTTCAGAGTGTTAAGTTCAA+GGG | + | chr5_1:915077-915096 | None:intergenic | 30.0% |
| !!! | ATGGTAATCCCTTTTTCAAA+CGG | + | chr5_1:915102-915121 | None:intergenic | 30.0% |
| AACTGATTATTTGTCAAGCA+TGG | + | chr5_1:915121-915140 | None:intergenic | 30.0% | |
| AAGAAAATTGAACAAAAGGC+TGG | + | chr5_1:915238-915257 | None:intergenic | 30.0% | |
| ! | TTACGATAGATACATTGACT+CGG | - | chr5_1:915256-915275 | Msa0709800:intron | 30.0% |
| TATAGAGAAACAAAAGGGAA+TGG | - | chr5_1:915402-915421 | Msa0709800:intron | 30.0% | |
| !! | TTAAACGGTGTTATTTAGAG+GGG | - | chr5_1:915599-915618 | Msa0709800:intron | 30.0% |
| !!! | CCATGTCTTTTTTTGACAAT+TGG | + | chr5_1:915841-915860 | None:intergenic | 30.0% |
| CCAATTGTCAAAAAAAGACA+TGG | - | chr5_1:915838-915857 | Msa0709800:intron | 30.0% | |
| CATCACTAGCAATAAAATGT+TGG | + | chr5_1:915958-915977 | None:intergenic | 30.0% | |
| TTGAGTATTTCCATTGTAGA+TGG | + | chr5_1:916132-916151 | None:intergenic | 30.0% | |
| GTCATACATAAGTGATAGAT+GGG | + | chr5_1:916176-916195 | None:intergenic | 30.0% | |
| AGTCATACATAAGTGATAGA+TGG | + | chr5_1:916177-916196 | None:intergenic | 30.0% | |
| GGATAAGAAAGAAATGTGTA+TGG | - | chr5_1:916415-916434 | Msa0709800:CDS | 30.0% | |
| AAGAGCAAGATACTGATAAT+AGG | - | chr5_1:916662-916681 | Msa0709800:intron | 30.0% | |
| CTCTAATATAGTAATATGCC+TGG | + | chr5_1:916908-916927 | None:intergenic | 30.0% | |
| AACATTACCAGTCTCTTTAA+TGG | + | chr5_1:917065-917084 | None:intergenic | 30.0% | |
| ! | TAAAGAGACTGGTAATGTTA+AGG | - | chr5_1:917066-917085 | Msa0709800:intron | 30.0% |
| !!! | TTTGATTTTGGCTTGTTCTA+GGG | - | chr5_1:917197-917216 | Msa0709800:intron | 30.0% |
| ! | AGATTTTTCCCTTCAGAATT+TGG | - | chr5_1:917291-917310 | Msa0709800:intron | 30.0% |
| ! | GATTTTTCCCTTCAGAATTT+GGG | - | chr5_1:917292-917311 | Msa0709800:intron | 30.0% |
| ATGTCGAATTTGTACTTTCA+CGG | + | chr5_1:917367-917386 | None:intergenic | 30.0% | |
| TTGGTAGATACATAGGTATA+GGG | + | chr5_1:917411-917430 | None:intergenic | 30.0% | |
| AAGATAATGACTTTGTCTCT+TGG | + | chr5_1:917489-917508 | None:intergenic | 30.0% | |
| AAGAGACAAAGTCATTATCT+TGG | - | chr5_1:917488-917507 | Msa0709800:intron | 30.0% | |
| AGAGACAAAGTCATTATCTT+GGG | - | chr5_1:917489-917508 | Msa0709800:intron | 30.0% | |
| TTCAATAAGGAAGAAGACAT+TGG | - | chr5_1:917660-917679 | Msa0709800:intron | 30.0% | |
| ! | AGAATTTTGTTCAATGTCCT+TGG | + | chr5_1:917714-917733 | None:intergenic | 30.0% |
| GTTGAATGAGTAAATGTTCT+TGG | + | chr5_1:917751-917770 | None:intergenic | 30.0% | |
| TAATAGAGGATAAACTTCTC+AGG | - | chr5_1:917826-917845 | Msa0709800:intron | 30.0% | |
| AATAGAGGATAAACTTCTCA+GGG | - | chr5_1:917827-917846 | Msa0709800:intron | 30.0% | |
| TACGAATAATGACAATTGCT+CGG | - | chr5_1:918357-918376 | Msa0709800:five_prime_UTR | 30.0% | |
| ! | TATCATTTTCAAATAGTCGG+TGG | + | chr5_1:918416-918435 | None:intergenic | 30.0% |
| !! | ATTATTGAGGAGATTAGCCT+TGG | + | chr5_1:912388-912407 | None:intergenic | 35.0% |
| CAAAACTTTAGGCGTCAATT+TGG | - | chr5_1:912410-912429 | Msa0709800:exon | 35.0% | |
| GGAGGAATATATTACGTACA+GGG | + | chr5_1:912437-912456 | None:intergenic | 35.0% | |
| AGGAGGAATATATTACGTAC+AGG | + | chr5_1:912438-912457 | None:intergenic | 35.0% | |
| TCTGTATGATCATGAGAACT+TGG | - | chr5_1:912638-912657 | Msa0709800:intron | 35.0% | |
| GAAGATTATCGCTGCAATTA+AGG | - | chr5_1:912728-912747 | Msa0709800:intron | 35.0% | |
| AGAAGCCAAACCAGAAAAAA+GGG | + | chr5_1:912841-912860 | None:intergenic | 35.0% | |
| AAGAAGCCAAACCAGAAAAA+AGG | + | chr5_1:912842-912861 | None:intergenic | 35.0% | |
| ! | GAAAAAGGGGTATACATACA+GGG | + | chr5_1:913021-913040 | None:intergenic | 35.0% |
| ! | AGAAAAAGGGGTATACATAC+AGG | + | chr5_1:913022-913041 | None:intergenic | 35.0% |
| ! | TATCAATTAGGGGCATGTTT+AGG | - | chr5_1:913153-913172 | Msa0709800:CDS | 35.0% |
| CTCTCAAATTAAACTCTTGC+TGG | - | chr5_1:913643-913662 | Msa0709800:intron | 35.0% | |
| CAAATTAAACTCTTGCTGGT+AGG | - | chr5_1:913647-913666 | Msa0709800:intron | 35.0% | |
| !! | GCTGGTAGGAATTTTAACAT+TGG | - | chr5_1:913661-913680 | Msa0709800:intron | 35.0% |
| CAGCAAAATCTGCATTTGAA+GGG | - | chr5_1:913760-913779 | Msa0709800:intron | 35.0% | |
| ! | TTCAATAGCACGTCGAATTT+TGG | + | chr5_1:913790-913809 | None:intergenic | 35.0% |
| TTGCTAGACACATATGTGTA+GGG | + | chr5_1:913825-913844 | None:intergenic | 35.0% | |
| TTCAACAAGGAAGATGACAT+TGG | - | chr5_1:914130-914149 | Msa0709800:intron | 35.0% | |
| ! | CGAAAAAACTTTTCTTCCAG+AGG | - | chr5_1:914282-914301 | Msa0709800:intron | 35.0% |
| ! | AATACCACGTTGATTGGAAT+AGG | + | chr5_1:914424-914443 | None:intergenic | 35.0% |
| ATCGATAATACCACGTTGAT+TGG | + | chr5_1:914430-914449 | None:intergenic | 35.0% | |
| ! | TTTGTGATTGAGCCATCTTT+TGG | - | chr5_1:914487-914506 | Msa0709800:intron | 35.0% |
| ! | TTGTGATTGAGCCATCTTTT+GGG | - | chr5_1:914488-914507 | Msa0709800:intron | 35.0% |
| TACTTCAAACGAACTGATCA+AGG | + | chr5_1:914567-914586 | None:intergenic | 35.0% | |
| TTGTCAAAATGTTGCCTTCT+TGG | - | chr5_1:914728-914747 | Msa0709800:intron | 35.0% | |
| GCCCGGCAAATTAAATTTAA+TGG | + | chr5_1:914948-914967 | None:intergenic | 35.0% | |
| AGTACATGTTATTATTGGCC+CGG | + | chr5_1:914965-914984 | None:intergenic | 35.0% | |
| ! | GTTTCAGAGTGTTAAGTTCA+AGG | + | chr5_1:915078-915097 | None:intergenic | 35.0% |
| AGAAACAAAAGGGAATGGAA+GGG | - | chr5_1:915407-915426 | Msa0709800:intron | 35.0% | |
| ! | TTGACCTTTTCCATTGAAGA+TGG | - | chr5_1:915554-915573 | Msa0709800:intron | 35.0% |
| TATATCACAGCCATCTTCAA+TGG | + | chr5_1:915567-915586 | None:intergenic | 35.0% | |
| AGCAAGATACTGATAATAGG+AGG | - | chr5_1:916665-916684 | Msa0709800:intron | 35.0% | |
| GCAAGATACTGATAATAGGA+GGG | - | chr5_1:916666-916685 | Msa0709800:intron | 35.0% | |
| TATAGTAGAAGCAAGCGTAA+AGG | - | chr5_1:916717-916736 | Msa0709800:intron | 35.0% | |
| ! | ATCACACTTTTGCTTTGGTT+AGG | - | chr5_1:916746-916765 | Msa0709800:intron | 35.0% |
| ! | TCACACTTTTGCTTTGGTTA+GGG | - | chr5_1:916747-916766 | Msa0709800:intron | 35.0% |
| ! | TGGGTGTTTGAAATCTTACA+TGG | + | chr5_1:916843-916862 | None:intergenic | 35.0% |
| TATATCACCAATGAACATCC+AGG | - | chr5_1:916887-916906 | Msa0709800:intron | 35.0% | |
| TAATATGCCTGGATGTTCAT+TGG | + | chr5_1:916897-916916 | None:intergenic | 35.0% | |
| ! | GTTTGAAATGAGAATGGCAT+TGG | - | chr5_1:916927-916946 | Msa0709800:intron | 35.0% |
| !!! | CTTTGATTTTGGCTTGTTCT+AGG | - | chr5_1:917196-917215 | Msa0709800:intron | 35.0% |
| ! | GTTGGTAGATACATAGGTAT+AGG | + | chr5_1:917412-917431 | None:intergenic | 35.0% |
| !! | AAAGGAGTTGGTAGATACAT+AGG | + | chr5_1:917418-917437 | None:intergenic | 35.0% |
| AAAATAACCAGCAAAGGAGT+TGG | + | chr5_1:917430-917449 | None:intergenic | 35.0% | |
| TGGTACAAAATAACCAGCAA+AGG | + | chr5_1:917436-917455 | None:intergenic | 35.0% | |
| ATAATGACTTTGTCTCTTGG+TGG | + | chr5_1:917486-917505 | None:intergenic | 35.0% | |
| AAAGTCATTATCTTGGGTGA+TGG | - | chr5_1:917495-917514 | Msa0709800:intron | 35.0% | |
| ! | TTGGGTGATGGCAATAAAAA+AGG | - | chr5_1:917507-917526 | Msa0709800:intron | 35.0% |
| !! | GTGGTTTAGTTCATGCATTT+TGG | - | chr5_1:917557-917576 | Msa0709800:intron | 35.0% |
| ACAGTGAGGTATGCAAATAT+TGG | + | chr5_1:917600-917619 | None:intergenic | 35.0% | |
| ATTTGCAGCTGTCTTCAATA+AGG | - | chr5_1:917647-917666 | Msa0709800:intron | 35.0% | |
| AACCTACACTATTAAAGCTG+TGG | - | chr5_1:917683-917702 | Msa0709800:intron | 35.0% | |
| ! | ATCCACAGCTTTAATAGTGT+AGG | + | chr5_1:917688-917707 | None:intergenic | 35.0% |
| AATGAGTAAATGTTCTTGGG+AGG | + | chr5_1:917747-917766 | None:intergenic | 35.0% | |
| AAACTTCTCAGGGATATTGA+AGG | - | chr5_1:917837-917856 | Msa0709800:intron | 35.0% | |
| AATCCTACATTGTCTGGAAA+AGG | + | chr5_1:918020-918039 | None:intergenic | 35.0% | |
| ATTGCTAATCCTACATTGTC+TGG | + | chr5_1:918026-918045 | None:intergenic | 35.0% | |
| !! | TTTGAGATTGAGCCTTCTTT+TGG | - | chr5_1:918083-918102 | Msa0709800:intron | 35.0% |
| ! | TTGAGATTGAGCCTTCTTTT+GGG | - | chr5_1:918084-918103 | Msa0709800:intron | 35.0% |
| GCTCGGAATATTGTGTAATA+TGG | - | chr5_1:918374-918393 | Msa0709800:five_prime_UTR | 35.0% | |
| !! | AATCTTGCTTTTCTCAGCCA+TGG | + | chr5_1:912256-912275 | None:intergenic | 40.0% |
| ! | AGCAAGATTTTGTTCATCGG+AGG | - | chr5_1:912267-912286 | Msa0709800:three_prime_UTR | 40.0% |
| ! | ATTTTGTTCATCGGAGGAAC+AGG | - | chr5_1:912273-912292 | Msa0709800:three_prime_UTR | 40.0% |
| CTTGGTGAAAGTAATCAAGC+AGG | - | chr5_1:912656-912675 | Msa0709800:intron | 40.0% | |
| AGTAATCAAGCAGGTAGATG+TGG | - | chr5_1:912665-912684 | Msa0709800:intron | 40.0% | |
| GGTAGATGTGGTCATATCTA+CGG | - | chr5_1:912677-912696 | Msa0709800:intron | 40.0% | |
| GATTATCGCTGCAATTAAGG+AGG | - | chr5_1:912731-912750 | Msa0709800:intron | 40.0% | |
| ! | GTGCCTTTTACCCTTTTTTC+TGG | - | chr5_1:912828-912847 | Msa0709800:CDS | 40.0% |
| TCATGTACACCACACAAAAG+TGG | - | chr5_1:913307-913326 | Msa0709800:intron | 40.0% | |
| AAAGTGGACAGTCACAATCA+TGG | - | chr5_1:913323-913342 | Msa0709800:intron | 40.0% | |
| TGTGTCAAAGTCCAAATTGC+CGG | + | chr5_1:913361-913380 | None:intergenic | 40.0% | |
| !!! | TCCGCAGAGATTTTTTCCTT+CGG | - | chr5_1:913698-913717 | Msa0709800:intron | 40.0% |
| TCCGAAGGAAAAAATCTCTG+CGG | + | chr5_1:913702-913721 | None:intergenic | 40.0% | |
| ! | CCTTCAAATGCAGATTTTGC+TGG | + | chr5_1:913762-913781 | None:intergenic | 40.0% |
| CCAGCAAAATCTGCATTTGA+AGG | - | chr5_1:913759-913778 | Msa0709800:intron | 40.0% | |
| ! | AATTCGACGTGCTATTGAAG+CGG | - | chr5_1:913791-913810 | Msa0709800:CDS | 40.0% |
| GTTGCTAGACACATATGTGT+AGG | + | chr5_1:913826-913845 | None:intergenic | 40.0% | |
| TGTCTAGCAACTACTTTGCT+GGG | - | chr5_1:913835-913854 | Msa0709800:intron | 40.0% | |
| ! | ATGACGACTTTGTCTTTTGG+AGG | + | chr5_1:913906-913925 | None:intergenic | 40.0% |
| AAAGTCGTCATATATGGCGA+TGG | - | chr5_1:913915-913934 | Msa0709800:intron | 40.0% | |
| ACAAACTAACATGTTGGCAC+CGG | - | chr5_1:913952-913971 | Msa0709800:intron | 40.0% | |
| AACATTCACCATTAGAGCTG+TGG | - | chr5_1:914153-914172 | Msa0709800:intron | 40.0% | |
| TCCAGAGGATAAACTTCTCA+AGG | - | chr5_1:914297-914316 | Msa0709800:intron | 40.0% | |
| TCCTTGAGAAGTTTATCCTC+TGG | + | chr5_1:914301-914320 | None:intergenic | 40.0% | |
| TAGGAGCCTCTGCAATAAAA+GGG | + | chr5_1:914405-914424 | None:intergenic | 40.0% | |
| ATAGGAGCCTCTGCAATAAA+AGG | + | chr5_1:914406-914425 | None:intergenic | 40.0% | |
| ! | TGTGATTGAGCCATCTTTTG+GGG | - | chr5_1:914489-914508 | Msa0709800:intron | 40.0% |
| CAGTTGTGTACTTGACATCT+GGG | + | chr5_1:914534-914553 | None:intergenic | 40.0% | |
| ACAGTTGTGTACTTGACATC+TGG | + | chr5_1:914535-914554 | None:intergenic | 40.0% | |
| AGATGTCAAGTACACAACTG+TGG | - | chr5_1:914534-914553 | Msa0709800:intron | 40.0% | |
| !! | TGTTACTTTGGAGTTTGACG+CGG | - | chr5_1:914628-914647 | Msa0709800:intron | 40.0% |
| AAACTCAGATGACACCAAGA+AGG | + | chr5_1:914745-914764 | None:intergenic | 40.0% | |
| GCTCATAGTTTGACTAAGCA+CGG | + | chr5_1:914850-914869 | None:intergenic | 40.0% | |
| TGCTTAGTCAAACTATGAGC+AGG | - | chr5_1:914850-914869 | Msa0709800:intron | 40.0% | |
| GCTTAGTCAAACTATGAGCA+GGG | - | chr5_1:914851-914870 | Msa0709800:intron | 40.0% | |
| CTTAGTCAAACTATGAGCAG+GGG | - | chr5_1:914852-914871 | Msa0709800:intron | 40.0% | |
| CAGGGGAAACATTGAACAAA+TGG | - | chr5_1:914869-914888 | Msa0709800:intron | 40.0% | |
| ! | TCTGAAACGCCGTTTGAAAA+AGG | - | chr5_1:915090-915109 | Msa0709800:intron | 40.0% |
| CTGAAACGCCGTTTGAAAAA+GGG | - | chr5_1:915091-915110 | Msa0709800:intron | 40.0% | |
| GACCTACACTACACAATGAA+GGG | + | chr5_1:915163-915182 | None:intergenic | 40.0% | |
| TGACCTACACTACACAATGA+AGG | + | chr5_1:915164-915183 | None:intergenic | 40.0% | |
| !!! | TGCTATTTTTCCCATACGCT+GGG | + | chr5_1:915296-915315 | None:intergenic | 40.0% |
| !!! | TTGCTATTTTTCCCATACGC+TGG | + | chr5_1:915297-915316 | None:intergenic | 40.0% |
| GAGAAACAAAAGGGAATGGA+AGG | - | chr5_1:915406-915425 | Msa0709800:intron | 40.0% | |
| GATCGTGCACAATCTTTGAA+CGG | - | chr5_1:915521-915540 | Msa0709800:intron | 40.0% | |
| ACAGCCATCTTCAATGGAAA+AGG | + | chr5_1:915561-915580 | None:intergenic | 40.0% | |
| ! | ATGCTGCTCAACGATTTTCA+CGG | + | chr5_1:915892-915911 | None:intergenic | 40.0% |
| ACTCAAGTATTCGAGCAATG+GGG | + | chr5_1:916605-916624 | None:intergenic | 40.0% | |
| CACTCAAGTATTCGAGCAAT+GGG | + | chr5_1:916606-916625 | None:intergenic | 40.0% | |
| TCACTCAAGTATTCGAGCAA+TGG | + | chr5_1:916607-916626 | None:intergenic | 40.0% | |
| ATACTGATAATAGGAGGGAC+TGG | - | chr5_1:916671-916690 | Msa0709800:intron | 40.0% | |
| ! | TGGACATCACACTTTTGCTT+TGG | - | chr5_1:916741-916760 | Msa0709800:intron | 40.0% |
| CTCCACAATTTCACGACTAT+GGG | - | chr5_1:916805-916824 | Msa0709800:intron | 40.0% | |
| CACGACTATGGGTGTTAATT+TGG | - | chr5_1:916816-916835 | Msa0709800:CDS | 40.0% | |
| !! | AAATGAGAATGGCATTGGCA+GGG | - | chr5_1:916932-916951 | Msa0709800:intron | 40.0% |
| TCTCTACGATAATGAGAGCT+TGG | - | chr5_1:916958-916977 | Msa0709800:intron | 40.0% | |
| TGCAAAAGAAGAAGAGGACA+AGG | + | chr5_1:917096-917115 | None:intergenic | 40.0% | |
| !!! | TACAGATTTTGCTGGCTCAA+CGG | + | chr5_1:917340-917359 | None:intergenic | 40.0% |
| CGACATATGATTGAAGCTGA+AGG | - | chr5_1:917381-917400 | Msa0709800:intron | 40.0% | |
| TTAACCACTACTTCTACGCT+TGG | - | chr5_1:917535-917554 | Msa0709800:intron | 40.0% | |
| TTAAAGCTGTGGATGATCCA+AGG | - | chr5_1:917694-917713 | Msa0709800:intron | 40.0% | |
| TTCTCAGGGATATTGAAGGT+TGG | - | chr5_1:917841-917860 | Msa0709800:CDS | 40.0% | |
| ! | ACACCTTTTCCAGACAATGT+AGG | - | chr5_1:918014-918033 | Msa0709800:intron | 40.0% |
| TGTCACTCAGTGTTTGTGAA+AGG | - | chr5_1:918047-918066 | Msa0709800:intron | 40.0% | |
| AGAAGGCTCAATCTCAAAGT+TGG | + | chr5_1:918081-918100 | None:intergenic | 40.0% | |
| ! | TGAGATTGAGCCTTCTTTTG+GGG | - | chr5_1:918085-918104 | Msa0709800:intron | 40.0% |
| TAAGAAGCAATAAGCGACAG+AGG | + | chr5_1:918276-918295 | None:intergenic | 40.0% | |
| ATCGGAGGAACAGGTTACAT+CGG | - | chr5_1:912282-912301 | Msa0709800:three_prime_UTR | 45.0% | |
| GTAGAAGCAAGTGCAAAAGC+TGG | - | chr5_1:912315-912334 | Msa0709800:three_prime_UTR | 45.0% | |
| !! | TGGACATCCCACTTTTGCAT+TGG | - | chr5_1:912335-912354 | Msa0709800:three_prime_UTR | 45.0% |
| TCACGGACCAATGCAAAAGT+GGG | + | chr5_1:912345-912364 | None:intergenic | 45.0% | |
| TTCACGGACCAATGCAAAAG+TGG | + | chr5_1:912346-912365 | None:intergenic | 45.0% | |
| ACAGAGAGTGATCCTTTAGC+TGG | - | chr5_1:912530-912549 | Msa0709800:CDS | 45.0% | |
| GATGTGGTCATATCTACGGT+AGG | - | chr5_1:912681-912700 | Msa0709800:intron | 45.0% | |
| ! | TAAGGAGGCTGGTAACGTTA+AGG | - | chr5_1:912746-912765 | Msa0709800:intron | 45.0% |
| ! | AAGGGGTATACATACAGGGA+CGG | + | chr5_1:913017-913036 | None:intergenic | 45.0% |
| !! | TGTGACTGTCCACTTTTGTG+TGG | + | chr5_1:913319-913338 | None:intergenic | 45.0% |
| TGGACAGTCACAATCATGGT+GGG | - | chr5_1:913327-913346 | Msa0709800:intron | 45.0% | |
| ACGTCATTCCCAAATTCCGA+AGG | + | chr5_1:913717-913736 | None:intergenic | 45.0% | |
| ! | ATTTTGCTGGATCTACCGCA+TGG | + | chr5_1:913749-913768 | None:intergenic | 45.0% |
| GTGTCTAGCAACTACTTTGC+TGG | - | chr5_1:913834-913853 | Msa0709800:intron | 45.0% | |
| !! | TTTGTCTTTTGGAGGAGGTG+GGG | + | chr5_1:913898-913917 | None:intergenic | 45.0% |
| !! | CTTTGTCTTTTGGAGGAGGT+GGG | + | chr5_1:913899-913918 | None:intergenic | 45.0% |
| !! | ACTTTGTCTTTTGGAGGAGG+TGG | + | chr5_1:913900-913919 | None:intergenic | 45.0% |
| !! | ACGACTTTGTCTTTTGGAGG+AGG | + | chr5_1:913903-913922 | None:intergenic | 45.0% |
| TATGGCGATGGAAATCCCAA+AGG | - | chr5_1:913927-913946 | Msa0709800:intron | 45.0% | |
| ATGTACAGCGGTGTTCAACA+AGG | - | chr5_1:914117-914136 | Msa0709800:intron | 45.0% | |
| ! | TGGATCATCCACAGCTCTAA+TGG | + | chr5_1:914164-914183 | None:intergenic | 45.0% |
| TTAGAGCTGTGGATGATCCA+AGG | - | chr5_1:914164-914183 | Msa0709800:intron | 45.0% | |
| CCTTGTGGGAGAAGAAGATT+GGG | - | chr5_1:914251-914270 | Msa0709800:intron | 45.0% | |
| GGTATTATCGATCCACCACT+CGG | - | chr5_1:914438-914457 | Msa0709800:intron | 45.0% | |
| TAAGCCTCAACCCCAAAAGA+TGG | + | chr5_1:914502-914521 | None:intergenic | 45.0% | |
| TGTCAAGTACACAACTGTGG+AGG | - | chr5_1:914537-914556 | Msa0709800:intron | 45.0% | |
| ! | CAGAGTGTTAAGTTCAAGGG+AGG | + | chr5_1:915074-915093 | None:intergenic | 45.0% |
| CTCCCTTCATTGTGTAGTGT+AGG | - | chr5_1:915158-915177 | Msa0709800:intron | 45.0% | |
| !! | CGATAGATACATTGACTCGG+AGG | - | chr5_1:915259-915278 | Msa0709800:intron | 45.0% |
| !! | TAGATACATTGACTCGGAGG+TGG | - | chr5_1:915262-915281 | Msa0709800:intron | 45.0% |
| GTGCACAATCTTTGAACGGA+TGG | - | chr5_1:915525-915544 | Msa0709800:intron | 45.0% | |
| !! | AACGGTGTTATTTAGAGGGG+AGG | - | chr5_1:915602-915621 | Msa0709800:intron | 45.0% |
| ! | CAACGATTTTCACGGGGTTA+TGG | + | chr5_1:915884-915903 | None:intergenic | 45.0% |
| ! | TGCTGCTCAACGATTTTCAC+GGG | + | chr5_1:915891-915910 | None:intergenic | 45.0% |
| CCATAGTCGTGAAATTGTGG+AGG | + | chr5_1:916807-916826 | None:intergenic | 45.0% | |
| CCTCCACAATTTCACGACTA+TGG | - | chr5_1:916804-916823 | Msa0709800:intron | 45.0% | |
| CACCCATAGTCGTGAAATTG+TGG | + | chr5_1:916810-916829 | None:intergenic | 45.0% | |
| !! | GAAATGAGAATGGCATTGGC+AGG | - | chr5_1:916931-916950 | Msa0709800:intron | 45.0% |
| !! | AATGAGAATGGCATTGGCAG+GGG | - | chr5_1:916933-916952 | Msa0709800:intron | 45.0% |
| AGCAATGAAGCAAGTAGACG+TGG | - | chr5_1:916985-917004 | Msa0709800:intron | 45.0% | |
| ATCGCTGCCATTAAAGAGAC+TGG | - | chr5_1:917055-917074 | Msa0709800:intron | 45.0% | |
| CGTCGTTCCCAAATTCTGAA+GGG | + | chr5_1:917302-917321 | None:intergenic | 45.0% | |
| ACGTCGTTCCCAAATTCTGA+AGG | + | chr5_1:917303-917322 | None:intergenic | 45.0% | |
| TTCAGAATTTGGGAACGACG+TGG | - | chr5_1:917302-917321 | Msa0709800:intron | 45.0% | |
| ! | ACGGCGAATACAGATTTTGC+TGG | + | chr5_1:917348-917367 | None:intergenic | 45.0% |
| GTATCTACCAACTCCTTTGC+TGG | - | chr5_1:917420-917439 | Msa0709800:intron | 45.0% | |
| GTACCAACATTTGTCCAACC+TGG | - | chr5_1:917450-917469 | Msa0709800:intron | 45.0% | |
| AAATGTTCTTGGGAGGTCTG+AGG | + | chr5_1:917740-917759 | None:intergenic | 45.0% | |
| TCAACGATGTTATCGCCTTG+TGG | - | chr5_1:917766-917785 | Msa0709800:intron | 45.0% | |
| CAACGATGTTATCGCCTTGT+GGG | - | chr5_1:917767-917786 | Msa0709800:intron | 45.0% | |
| CCTTGTGGGAGAAGAAGATT+GGG | - | chr5_1:914251-914270 | Msa0709800:intron | 45.0% | |
| !! | GCTCAATCTCAAAGTTGGTG+TGG | + | chr5_1:918076-918095 | None:intergenic | 45.0% |
| TGAGGCTTCTGCTTTATACC+CGG | - | chr5_1:918109-918128 | Msa0709800:intron | 45.0% | |
| AGAGTGGTGTAGTTGACATC+CGG | + | chr5_1:918131-918150 | None:intergenic | 45.0% | |
| TAGTCGGTGGTAACATACTG+AGG | + | chr5_1:918403-918422 | None:intergenic | 45.0% | |
| !! | ATAAATAAATATTTATCATT+TGG | + | chr5_1:912911-912930 | None:intergenic | 5.0% |
| !!! | ATTTAAATATTTTTTATTTG+AGG | - | chr5_1:913263-913282 | Msa0709800:CDS | 5.0% |
| TAACACACGCGTTGCATCCA+TGG | - | chr5_1:912236-912255 | Msa0709800:three_prime_UTR | 50.0% | |
| !! | TTGAGGAGATTAGCCTTGGC+AGG | + | chr5_1:912384-912403 | None:intergenic | 50.0% |
| CTTGATCCTCAATCAGAGCG+TGG | + | chr5_1:912707-912726 | None:intergenic | 50.0% | |
| ATCGCTGCAATTAAGGAGGC+TGG | - | chr5_1:912735-912754 | Msa0709800:intron | 50.0% | |
| GGTATACATACAGGGACGGA+GGG | + | chr5_1:913013-913032 | None:intergenic | 50.0% | |
| GTGGACAGTCACAATCATGG+TGG | - | chr5_1:913326-913345 | Msa0709800:intron | 50.0% | |
| ! | AGTCACAATCATGGTGGGAG+TGG | - | chr5_1:913332-913351 | Msa0709800:intron | 50.0% |
| ! | GTCACAATCATGGTGGGAGT+GGG | - | chr5_1:913333-913352 | Msa0709800:intron | 50.0% |
| TGACGTTGATCGTGTCCATG+CGG | - | chr5_1:913731-913750 | Msa0709800:intron | 50.0% | |
| TGTCCTGGCTGAGCTAATGT+GGG | + | chr5_1:913870-913889 | None:intergenic | 50.0% | |
| TTGTCCTGGCTGAGCTAATG+TGG | + | chr5_1:913871-913890 | None:intergenic | 50.0% | |
| ! | TCAACGAGCTTGTAGCCTTG+TGG | - | chr5_1:914236-914255 | Msa0709800:intron | 50.0% |
| !! | CAACGAGCTTGTAGCCTTGT+GGG | - | chr5_1:914237-914256 | Msa0709800:intron | 50.0% |
| GCCTTGTGGGAGAAGAAGAT+TGG | - | chr5_1:914250-914269 | Msa0709800:intron | 50.0% | |
| CCCAATCTTCTTCTCCCACA+AGG | + | chr5_1:914254-914273 | None:intergenic | 50.0% | |
| GGCTCCTATTCCAATCAACG+TGG | - | chr5_1:914417-914436 | Msa0709800:intron | 50.0% | |
| CTTTCACAAACACCGAGTGG+TGG | + | chr5_1:914453-914472 | None:intergenic | 50.0% | |
| !! | CACCACTCGGTGTTTGTGAA+AGG | - | chr5_1:914451-914470 | Msa0709800:intron | 50.0% |
| CACCTTTCACAAACACCGAG+TGG | + | chr5_1:914456-914475 | None:intergenic | 50.0% | |
| !!! | TGAGCCATCTTTTGGGGTTG+AGG | - | chr5_1:914495-914514 | Msa0709800:intron | 50.0% |
| ! | TTTTCCCATACGCTGGGTCA+TGG | + | chr5_1:915290-915309 | None:intergenic | 50.0% |
| ACAAAAGGGAATGGAAGGGC+AGG | - | chr5_1:915411-915430 | Msa0709800:intron | 50.0% | |
| CAAAAGGGAATGGAAGGGCA+GGG | - | chr5_1:915412-915431 | Msa0709800:intron | 50.0% | |
| GGAAGGGCAGGGAATCTATA+TGG | - | chr5_1:915423-915442 | Msa0709800:intron | 50.0% | |
| AGGGCAGGGAATCTATATGG+TGG | - | chr5_1:915426-915445 | Msa0709800:intron | 50.0% | |
| ! | GCTGCTCAACGATTTTCACG+GGG | + | chr5_1:915890-915909 | None:intergenic | 50.0% |
| ! | GAGTGAGAAGAAGTGTGCAG+TGG | - | chr5_1:916621-916640 | Msa0709800:intron | 50.0% |
| TGTGCAGTGGTCACGTGAAA+TGG | - | chr5_1:916634-916653 | Msa0709800:intron | 50.0% | |
| !! | ATAGGAGGGACTGGCTACAT+TGG | - | chr5_1:916680-916699 | Msa0709800:intron | 50.0% |
| GTAGAAGCAAGCGTAAAGGC+TGG | - | chr5_1:916721-916740 | Msa0709800:intron | 50.0% | |
| ATTGTGGAGGAGCTTAGCCT+TGG | + | chr5_1:916794-916813 | None:intergenic | 50.0% | |
| !! | ATGAGAATGGCATTGGCAGG+GGG | - | chr5_1:916934-916953 | Msa0709800:intron | 50.0% |
| TCACACACATGCTGCTGATC+AGG | - | chr5_1:917024-917043 | Msa0709800:intron | 50.0% | |
| !!! | ATTTTGCTGGCTCAACGGCA+TGG | + | chr5_1:917335-917354 | None:intergenic | 50.0% |
| ! | GCTCCAGGTTGGACAAATGT+TGG | + | chr5_1:917456-917475 | None:intergenic | 50.0% |
| TTTGTCCAACCTGGAGCTAC+AGG | - | chr5_1:917459-917478 | Msa0709800:intron | 50.0% | |
| ACCACTACTTCTACGCTTGG+TGG | - | chr5_1:917538-917557 | Msa0709800:intron | 50.0% | |
| ACCACCAAGCGTAGAAGTAG+TGG | + | chr5_1:917542-917561 | None:intergenic | 50.0% | |
| GCCTTGTGGGAGAAGAAGAT+TGG | - | chr5_1:914250-914269 | Msa0709800:intron | 50.0% | |
| CCCAATCTTCTTCTCCCACA+AGG | + | chr5_1:914254-914273 | None:intergenic | 50.0% | |
| !!! | TGAGCCTTCTTTTGGGGTTG+AGG | - | chr5_1:918091-918110 | Msa0709800:intron | 50.0% |
| GAAGCCTCAACCCCAAAAGA+AGG | + | chr5_1:918098-918117 | None:intergenic | 50.0% | |
| GAGTGGTGTAGTTGACATCC+GGG | + | chr5_1:918130-918149 | None:intergenic | 50.0% | |
| GGATGTCAACTACACCACTC+TGG | - | chr5_1:918130-918149 | Msa0709800:intron | 50.0% | |
| TGTCAACTACACCACTCTGG+AGG | - | chr5_1:918133-918152 | Msa0709800:intron | 50.0% | |
| ! | ATCAAGGCATTCCTCCAGAG+TGG | + | chr5_1:918147-918166 | None:intergenic | 50.0% |
| GAAGCAATAAGCGACAGAGG+TGG | + | chr5_1:918273-918292 | None:intergenic | 50.0% | |
| ! | GATCAGCGAGGGTGGATTCA+CGG | + | chr5_1:912362-912381 | None:intergenic | 55.0% |
| GGGTATACATACAGGGACGG+AGG | + | chr5_1:913014-913033 | None:intergenic | 55.0% | |
| ! | ATCATGGTGGGAGTGGGATC+CGG | - | chr5_1:913339-913358 | Msa0709800:intron | 55.0% |
| ! | CGACGTGCTATTGAAGCGGA+AGG | - | chr5_1:913795-913814 | Msa0709800:CDS | 55.0% |
| GTCCTGGCTGAGCTAATGTG+GGG | + | chr5_1:913869-913888 | None:intergenic | 55.0% | |
| TGGTTCCATGACCCAGCGTA+TGG | - | chr5_1:915282-915301 | Msa0709800:intron | 55.0% | |
| GGTTCCATGACCCAGCGTAT+GGG | - | chr5_1:915283-915302 | Msa0709800:intron | 55.0% | |
| GCAGTGGTCACGTGAAATGG+CGG | - | chr5_1:916637-916656 | Msa0709800:intron | 55.0% | |
| AACCATGTCTGACCCCACCA+AGG | - | chr5_1:916774-916793 | Msa0709800:intron | 55.0% | |
| !! | TGGAGGAGCTTAGCCTTGGT+GGG | + | chr5_1:916790-916809 | None:intergenic | 55.0% |
| CGACAGAGGTGGATCAGTTG+TGG | + | chr5_1:918262-918281 | None:intergenic | 55.0% | |
| AGCCTTGGCAGGATCAGCGA+GGG | + | chr5_1:912373-912392 | None:intergenic | 60.0% | |
| ! | TAGCCTTGGCAGGATCAGCG+AGG | + | chr5_1:912374-912393 | None:intergenic | 60.0% |
| GGTAGGCCACGCTCTGATTG+AGG | - | chr5_1:912698-912717 | Msa0709800:intron | 60.0% | |
| GGGAGTGGGATCCGGCAATT+TGG | - | chr5_1:913347-913366 | Msa0709800:intron | 60.0% | |
| CTCCCCACATTAGCTCAGCC+AGG | - | chr5_1:913864-913883 | Msa0709800:intron | 60.0% | |
| AGCCTTGGTGGGGTCAGACA+TGG | + | chr5_1:916779-916798 | None:intergenic | 60.0% | |
| !! | GGAGGAGCTTAGCCTTGGTG+GGG | + | chr5_1:916789-916808 | None:intergenic | 60.0% |
| !! | GTGGAGGAGCTTAGCCTTGG+TGG | + | chr5_1:916791-916810 | None:intergenic | 60.0% |
| GTGGACCTGTAGCTCCAGGT+TGG | + | chr5_1:917467-917486 | None:intergenic | 60.0% | |
| ! | CTTGGTGGACCTGTAGCTCC+AGG | + | chr5_1:917471-917490 | None:intergenic | 60.0% |
| CTTGGCAGGATCAGCGAGGG+TGG | + | chr5_1:912370-912389 | None:intergenic | 65.0% | |
| CACCCTCGCTGATCCTGCCA+AGG | - | chr5_1:912368-912387 | Msa0709800:three_prime_UTR | 65.0% | |
| GGAGGTGGGGCGAATTGTCC+TGG | + | chr5_1:913885-913904 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 912155 | 918452 | 912155 | ID=Msa0709800;Name=Msa0709800 |
| chr5_1 | mRNA | 912155 | 918452 | 912155 | ID=Msa0709800-mRNA-1;Parent=Msa0709800;Name=Msa0709800-mRNA-1;_AED=0.21;_eAED=0.21;_QI=100|0.77|0.5|1|1|1|10|274|530 |
| chr5_1 | exon | 912155 | 912595 | 912155 | ID=Msa0709800-mRNA-1:exon:486;Parent=Msa0709800-mRNA-1 |
| chr5_1 | exon | 912749 | 912952 | 912749 | ID=Msa0709800-mRNA-1:exon:485;Parent=Msa0709800-mRNA-1 |
| chr5_1 | exon | 913079 | 913316 | 913079 | ID=Msa0709800-mRNA-1:exon:484;Parent=Msa0709800-mRNA-1 |
| chr5_1 | exon | 913520 | 913654 | 913520 | ID=Msa0709800-mRNA-1:exon:483;Parent=Msa0709800-mRNA-1 |
| chr5_1 | exon | 913764 | 913839 | 913764 | ID=Msa0709800-mRNA-1:exon:482;Parent=Msa0709800-mRNA-1 |
| chr5_1 | exon | 916035 | 916191 | 916035 | ID=Msa0709800-mRNA-1:exon:481;Parent=Msa0709800-mRNA-1 |
| chr5_1 | exon | 916279 | 916482 | 916279 | ID=Msa0709800-mRNA-1:exon:480;Parent=Msa0709800-mRNA-1 |
| chr5_1 | exon | 916809 | 916902 | 916809 | ID=Msa0709800-mRNA-1:exon:479;Parent=Msa0709800-mRNA-1 |
| chr5_1 | exon | 917840 | 917974 | 917840 | ID=Msa0709800-mRNA-1:exon:478;Parent=Msa0709800-mRNA-1 |
| chr5_1 | exon | 918170 | 918452 | 918170 | ID=Msa0709800-mRNA-1:exon:477;Parent=Msa0709800-mRNA-1 |
| chr5_1 | five_prime_UTR | 918353 | 918452 | 918353 | ID=Msa0709800-mRNA-1:five_prime_utr;Parent=Msa0709800-mRNA-1 |
| chr5_1 | CDS | 918170 | 918352 | 918170 | ID=Msa0709800-mRNA-1:cds;Parent=Msa0709800-mRNA-1 |
| chr5_1 | CDS | 917840 | 917974 | 917840 | ID=Msa0709800-mRNA-1:cds;Parent=Msa0709800-mRNA-1 |
| chr5_1 | CDS | 916809 | 916902 | 916809 | ID=Msa0709800-mRNA-1:cds;Parent=Msa0709800-mRNA-1 |
| chr5_1 | CDS | 916279 | 916482 | 916279 | ID=Msa0709800-mRNA-1:cds;Parent=Msa0709800-mRNA-1 |
| chr5_1 | CDS | 916035 | 916191 | 916035 | ID=Msa0709800-mRNA-1:cds;Parent=Msa0709800-mRNA-1 |
| chr5_1 | CDS | 913764 | 913839 | 913764 | ID=Msa0709800-mRNA-1:cds;Parent=Msa0709800-mRNA-1 |
| chr5_1 | CDS | 913520 | 913654 | 913520 | ID=Msa0709800-mRNA-1:cds;Parent=Msa0709800-mRNA-1 |
| chr5_1 | CDS | 913079 | 913316 | 913079 | ID=Msa0709800-mRNA-1:cds;Parent=Msa0709800-mRNA-1 |
| chr5_1 | CDS | 912749 | 912952 | 912749 | ID=Msa0709800-mRNA-1:cds;Parent=Msa0709800-mRNA-1 |
| chr5_1 | CDS | 912429 | 912595 | 912429 | ID=Msa0709800-mRNA-1:cds;Parent=Msa0709800-mRNA-1 |
| chr5_1 | three_prime_UTR | 912155 | 912428 | 912155 | ID=Msa0709800-mRNA-1:three_prime_utr;Parent=Msa0709800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
