Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435100 | XP_013462162.1 | 95.923 | 466 | 19 | 0 | 1 | 466 | 1 | 466 | 0.0 | 881 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435100 | A0A072V2W7 | 95.923 | 466 | 19 | 0 | 1 | 466 | 1 | 466 | 0.0 | 881 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0435100 | Msa0574400 | 0.802144 | 6.448013e-49 | -8.615850e-47 |
| Msa0435100 | Msa1091320 | 0.810617 | 1.054611e-50 | -8.615850e-47 |
| Msa0435100 | Msa1111290 | 0.802516 | 5.406505e-49 | -8.615850e-47 |
| Msa0435100 | Msa1184890 | 0.805882 | 1.076833e-49 | -8.615850e-47 |
| Msa0435100 | Msa1208950 | 0.808620 | 2.831651e-50 | -8.615850e-47 |
| Msa0435100 | Msa1267040 | 0.823668 | 1.223379e-53 | -8.615850e-47 |
| Msa0435100 | Msa1267170 | 0.827294 | 1.693446e-54 | -8.615850e-47 |
| Msa0435100 | Msa1341840 | 0.834606 | 2.720287e-56 | -8.615850e-47 |
| Msa0435100 | Msa1403710 | 0.822206 | 2.681209e-53 | -8.615850e-47 |
| Msa0435100 | Msa1461370 | 0.801764 | 7.719374e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435100 | MtrunA17_Chr3g0141921 | 95.923 | 466 | 19 | 0 | 1 | 466 | 1 | 466 | 0.0 | 881 |
| Msa0435100 | MtrunA17_Chr4g0004211 | 29.148 | 446 | 239 | 10 | 72 | 456 | 224 | 653 | 7.90e-42 | 157 |
| Msa0435100 | MtrunA17_Chr4g0034861 | 28.698 | 453 | 246 | 11 | 72 | 461 | 194 | 632 | 1.32e-39 | 151 |
| Msa0435100 | MtrunA17_Chr3g0141911 | 49.412 | 170 | 49 | 6 | 283 | 451 | 34 | 167 | 1.74e-36 | 132 |
| Msa0435100 | MtrunA17_Chr2g0331991 | 46.610 | 118 | 62 | 1 | 345 | 461 | 592 | 709 | 4.79e-22 | 99.4 |
| Msa0435100 | MtrunA17_Chr2g0331991 | 29.924 | 264 | 140 | 11 | 68 | 303 | 248 | 494 | 4.18e-19 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435100 | AT1G75420.1 | 76.149 | 457 | 104 | 3 | 8 | 464 | 7 | 458 | 0.0 | 673 |
| Msa0435100 | AT1G75420.3 | 78.505 | 428 | 88 | 2 | 37 | 464 | 9 | 432 | 0.0 | 649 |
| Msa0435100 | AT1G19710.1 | 73.404 | 470 | 118 | 4 | 1 | 464 | 1 | 469 | 0.0 | 646 |
| Msa0435100 | AT1G75420.2 | 81.769 | 373 | 68 | 0 | 92 | 464 | 1 | 373 | 0.0 | 633 |
| Msa0435100 | AT1G52420.1 | 29.581 | 453 | 251 | 11 | 68 | 461 | 226 | 669 | 1.46e-43 | 163 |
| Msa0435100 | AT3G15940.2 | 28.898 | 481 | 243 | 14 | 68 | 461 | 228 | 696 | 6.78e-38 | 147 |
| Msa0435100 | AT3G15940.1 | 28.898 | 481 | 243 | 14 | 68 | 461 | 228 | 696 | 6.78e-38 | 147 |
Find 123 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATCAATTTACAATTTAA+TGG | 0.196158 | 3_2:+88123607 | None:intergenic |
| TGCACATAACATTGTGAAAT+TGG | 0.197530 | 3_2:-88123789 | Msa0435100:CDS |
| ACGAAATGCCATTGCTTCTA+TGG | 0.222266 | 3_2:+88125127 | None:intergenic |
| TCGCACGAACTATCTCTTTC+TGG | 0.222877 | 3_2:-88127678 | Msa0435100:CDS |
| TAAATTGATTCCAAAGAAAA+AGG | 0.249712 | 3_2:-88123596 | Msa0435100:three_prime_UTR |
| CCCACTTCCTTTGTTCTGTA+TGG | 0.261172 | 3_2:-88123537 | Msa0435100:three_prime_UTR |
| GTGGCTGGATGCCGTCTTAA+AGG | 0.261650 | 3_2:-88126453 | Msa0435100:CDS |
| GGGTTCTTCGTGAGCATGTT+AGG | 0.272900 | 3_2:-88126079 | Msa0435100:CDS |
| AATAGGACCAGGGAGAGTTT+AGG | 0.282610 | 3_2:-88126287 | Msa0435100:CDS |
| TGATCAGGTTATTTATAGTT+TGG | 0.290255 | 3_2:-88127565 | Msa0435100:CDS |
| TGGAAATAGCAAGGAACTTA+TGG | 0.291694 | 3_2:-88126129 | Msa0435100:CDS |
| AGATGTACAACATAAGTTTC+AGG | 0.314019 | 3_2:+88126152 | None:intergenic |
| TGAAAGTTTGCAGCTCATTC+AGG | 0.315271 | 3_2:-88125723 | Msa0435100:CDS |
| GAGAGTGAAAGAGAGGTTTC+TGG | 0.327030 | 3_2:-88123720 | Msa0435100:CDS |
| ATAGGACCAGGGAGAGTTTA+GGG | 0.339089 | 3_2:-88126286 | Msa0435100:intron |
| GTCACACCATCCTTGCCTTC+AGG | 0.359263 | 3_2:+88123818 | None:intergenic |
| CAGTCACGGGGAGAATGTTT+TGG | 0.367113 | 3_2:-88125158 | Msa0435100:CDS |
| TGTTGAGAAGAGGCTGACTA+TGG | 0.372554 | 3_2:-88123759 | Msa0435100:CDS |
| ACTGTGGAGATCGTGGTTAA+TGG | 0.373098 | 3_2:-88123860 | Msa0435100:CDS |
| GAAACTTATGTTGTACATCT+TGG | 0.390726 | 3_2:-88126149 | Msa0435100:CDS |
| AATGTTGGACAGAGGAGTTC+AGG | 0.395727 | 3_2:-88127535 | Msa0435100:intron |
| CTGCAGAGTACTGGAAGAAT+AGG | 0.404454 | 3_2:-88126304 | Msa0435100:CDS |
| CTAGGTAAGGAGCCACTGTC+AGG | 0.405315 | 3_2:+88125561 | None:intergenic |
| CTGTGGAGATCGTGGTTAAT+GGG | 0.408149 | 3_2:-88123859 | Msa0435100:CDS |
| TGCTCAGACAAAGTTTGAAA+TGG | 0.409480 | 3_2:-88125645 | Msa0435100:CDS |
| TTCATGAAATCCAAGGGGCT+TGG | 0.414417 | 3_2:+88127723 | None:intergenic |
| GTGTTGGTTCTGATGTTGTT+TGG | 0.416917 | 3_2:-88127614 | Msa0435100:CDS |
| ATCATAGCACCTGCAACAAA+AGG | 0.424798 | 3_2:+88126341 | None:intergenic |
| TACAGCTCTTAAAGCTGATC+TGG | 0.435509 | 3_2:-88126504 | Msa0435100:CDS |
| ATCGTGGTTAATGGGACAAC+CGG | 0.438418 | 3_2:-88123851 | Msa0435100:CDS |
| CAGGTGTTTCACGTGGTAAA+GGG | 0.445043 | 3_2:-88125772 | Msa0435100:CDS |
| GCAGGTGTTTCACGTGGTAA+AGG | 0.451121 | 3_2:-88125773 | Msa0435100:intron |
| TAATGGTGAAGTTCCTAAGC+TGG | 0.455786 | 3_2:+88123624 | None:intergenic |
| ACAATTAAATTAACCAGCTT+AGG | 0.455925 | 3_2:-88123637 | Msa0435100:exon |
| ATGAAAGCTAGTAACATTAA+CGG | 0.460740 | 3_2:+88127873 | None:intergenic |
| CCTGCCTGCAAAAGGTGAAA+AGG | 0.463848 | 3_2:-88126534 | Msa0435100:CDS |
| CTGATTCCGTTGTGCTTCGA+AGG | 0.470227 | 3_2:+88127782 | None:intergenic |
| CACATATAACTGCAGAGTAC+TGG | 0.470342 | 3_2:-88126313 | Msa0435100:CDS |
| CTTTGTGGTGTTGCATGAAT+CGG | 0.474570 | 3_2:+88127806 | None:intergenic |
| ATTCTAAATACTGCTGTAGC+TGG | 0.475189 | 3_2:-88126479 | Msa0435100:CDS |
| GGCATTTCGTCTGCCTGTAC+TGG | 0.475966 | 3_2:-88125114 | Msa0435100:intron |
| TCCGTCGGAAATGCACCATC+TGG | 0.478042 | 3_2:-88127747 | Msa0435100:CDS |
| TAGTTTGGAGAGTAAAATGT+TGG | 0.480059 | 3_2:-88127550 | Msa0435100:CDS |
| TTGCATGAATCGGAATTGTT+CGG | 0.482273 | 3_2:+88127816 | None:intergenic |
| GCCTTCAGGATGCAGCAAAC+CGG | 0.485028 | 3_2:+88123832 | None:intergenic |
| TGCTGTAGCTGGAAAGTGGC+TGG | 0.486096 | 3_2:-88126468 | Msa0435100:CDS |
| TGATAGGTCCTGCCTGCAAA+AGG | 0.486905 | 3_2:-88126542 | Msa0435100:intron |
| TGTTCTTGTTCAGAATTCTC+AGG | 0.489341 | 3_2:-88125528 | Msa0435100:intron |
| GGTTCTTCGTGAGCATGTTA+GGG | 0.489601 | 3_2:-88126078 | Msa0435100:CDS |
| AGGCTGACTATGGGAAAGAA+AGG | 0.492284 | 3_2:-88123749 | Msa0435100:CDS |
| TTGTGCTTCGAAGGTCTTTG+TGG | 0.502365 | 3_2:+88127791 | None:intergenic |
| TGAATCCACCATAAAACCTT+CGG | 0.503051 | 3_2:+88126410 | None:intergenic |
| GTATCCTGCTGAACATGATC+AGG | 0.504998 | 3_2:-88127580 | Msa0435100:CDS |
| CAGAAGATAGTGTAGCAAAG+AGG | 0.510374 | 3_2:-88126100 | Msa0435100:CDS |
| CTTCGATTTCATGAAATCCA+AGG | 0.514716 | 3_2:+88127716 | None:intergenic |
| TTCGATTTCATGAAATCCAA+GGG | 0.516013 | 3_2:+88127717 | None:intergenic |
| GGCGAAGCATTCAGTAGCAT+TGG | 0.516216 | 3_2:-88127910 | Msa0435100:CDS |
| TGGTGCATTTCCGACGGAAG+AGG | 0.519098 | 3_2:+88127752 | None:intergenic |
| CTGCAATTCTATGTGACATA+TGG | 0.519548 | 3_2:+88123693 | None:intergenic |
| AGAAAATATGTATTACCCAT+TGG | 0.523554 | 3_2:-88123367 | Msa0435100:three_prime_UTR |
| GGTATGAGAGAGTGAAAGAG+AGG | 0.524664 | 3_2:-88123727 | Msa0435100:CDS |
| GCCAATTCCATCAAAAGTAA+AGG | 0.527566 | 3_2:+88127651 | None:intergenic |
| AGAAGATAGTGTAGCAAAGA+GGG | 0.528791 | 3_2:-88126099 | Msa0435100:CDS |
| ATAACCTGATCATGTTCAGC+AGG | 0.529328 | 3_2:+88127576 | None:intergenic |
| AGTTACCCTCGTTCTTCCGA+AGG | 0.529697 | 3_2:-88126426 | Msa0435100:CDS |
| TCCAAGGGGCTTGGACCAGA+TGG | 0.531755 | 3_2:+88127732 | None:intergenic |
| GAGCATGTTAGGGAATCTCT+TGG | 0.531903 | 3_2:-88126068 | Msa0435100:CDS |
| TAGCATTGGCGAAGAAAAGA+TGG | 0.533158 | 3_2:-88127896 | Msa0435100:CDS |
| GAAATCGAAGCTAGTTCTCA+TGG | 0.534458 | 3_2:-88127703 | Msa0435100:CDS |
| GTTCTGTATGGATGCGTAGT+GGG | 0.534468 | 3_2:-88123525 | Msa0435100:three_prime_UTR |
| AGTGAAGGACGTACCAGTAC+AGG | 0.541451 | 3_2:+88125101 | None:intergenic |
| CAAGAACATCAATAGAAGCT+AGG | 0.543899 | 3_2:+88125543 | None:intergenic |
| AACATACCCTAAACTCTCCC+TGG | 0.543946 | 3_2:+88126280 | None:intergenic |
| GGTGCATTTCCGACGGAAGA+GGG | 0.544846 | 3_2:+88127753 | None:intergenic |
| TTCACAATGTTATGTGCAAG+AGG | 0.545519 | 3_2:+88123794 | None:intergenic |
| TCCATACAGAACAAAGGAAG+TGG | 0.545757 | 3_2:+88123536 | None:intergenic |
| AGAACAACTCGATTCAAAAG+AGG | 0.547577 | 3_2:-88128004 | Msa0435100:five_prime_UTR |
| CTTCGCTCGATCGATCGATC+TGG | 0.547685 | 3_2:-88128082 | Msa0435100:five_prime_UTR |
| TTGCAGGGCACTGCAGCTGG+AGG | 0.549732 | 3_2:-88123884 | Msa0435100:intron |
| ACCATCTGGTCCAAGCCCCT+TGG | 0.551441 | 3_2:-88127733 | Msa0435100:CDS |
| TAGTGACATACTATTTATGA+TGG | 0.554440 | 3_2:+88126019 | None:intergenic |
| CTGCATCCTGAAGGCAAGGA+TGG | 0.559919 | 3_2:-88123824 | Msa0435100:CDS |
| TCATAGCACCTGCAACAAAA+GGG | 0.561260 | 3_2:+88126342 | None:intergenic |
| TGCGTAGTGGGTTGATGTAT+AGG | 0.567635 | 3_2:-88123513 | Msa0435100:three_prime_UTR |
| ACATCAATAGAAGCTAGGTA+AGG | 0.568775 | 3_2:+88125548 | None:intergenic |
| ATGTTCAGCAGGATACTGAT+TGG | 0.569395 | 3_2:+88127587 | None:intergenic |
| TAGAATTGCAGTGGTTCTCA+AGG | 0.573300 | 3_2:-88123681 | Msa0435100:CDS |
| ACCGGTTTGCTGCATCCTGA+AGG | 0.579599 | 3_2:-88123833 | Msa0435100:CDS |
| AGTACTGGAAGAATAGGACC+AGG | 0.581747 | 3_2:-88126298 | Msa0435100:CDS |
| GAGCTGCAAACTTTCATGAA+AGG | 0.583871 | 3_2:+88125730 | None:intergenic |
| GAGAGTAAAATGTTGGACAG+AGG | 0.584323 | 3_2:-88127543 | Msa0435100:CDS |
| CACGAACTATCTCTTTCTGG+TGG | 0.584552 | 3_2:-88127675 | Msa0435100:CDS |
| AAGGATAACCATAGAAGCAA+TGG | 0.585803 | 3_2:-88125135 | Msa0435100:CDS |
| GCGAGGGAATTATTTCAAAG+AGG | 0.586349 | 3_2:-88126381 | Msa0435100:CDS |
| GTTGAGAAGAGGCTGACTAT+GGG | 0.594669 | 3_2:-88123758 | Msa0435100:CDS |
| GGCTGACTATGGGAAAGAAA+GGG | 0.596427 | 3_2:-88123748 | Msa0435100:CDS |
| ACCAGATGGTGCATTTCCGA+CGG | 0.597524 | 3_2:+88127746 | None:intergenic |
| TTTGCTGCATCCTGAAGGCA+AGG | 0.599998 | 3_2:-88123828 | Msa0435100:CDS |
| CAGATTCACCCCTCTTCCGT+CGG | 0.601811 | 3_2:-88127762 | Msa0435100:CDS |
| TGTTCTGTATGGATGCGTAG+TGG | 0.606087 | 3_2:-88123526 | Msa0435100:three_prime_UTR |
| TGGTGGATTCATGAAATGCG+AGG | 0.616138 | 3_2:-88126398 | Msa0435100:CDS |
| TGGCAAGTCATGTTGAGAAG+AGG | 0.617321 | 3_2:-88123769 | Msa0435100:CDS |
| CACTGCAGCTGGAGGCACTG+TGG | 0.621939 | 3_2:-88123876 | Msa0435100:CDS |
| CCATACAGAACAAAGGAAGT+GGG | 0.624963 | 3_2:+88123537 | None:intergenic |
| TGGAGGCACTGTGGAGATCG+TGG | 0.626460 | 3_2:-88123867 | Msa0435100:CDS |
| GTGCATTTCCGACGGAAGAG+GGG | 0.627718 | 3_2:+88127754 | None:intergenic |
| ATACTGCTGTAGCTGGAAAG+TGG | 0.634836 | 3_2:-88126472 | Msa0435100:CDS |
| TGTACATCTTGGAAATAGCA+AGG | 0.635730 | 3_2:-88126138 | Msa0435100:CDS |
| GGTGGATTCATGAAATGCGA+GGG | 0.637828 | 3_2:-88126397 | Msa0435100:CDS |
| TGTTAACAAAACCCTGACAG+TGG | 0.644245 | 3_2:-88125573 | Msa0435100:CDS |
| TAGGTAAGGAGCCACTGTCA+GGG | 0.644824 | 3_2:+88125562 | None:intergenic |
| AACTTTCATGAAAGGCACGA+AGG | 0.649061 | 3_2:+88125738 | None:intergenic |
| CAGTAAAGTTGTGATTACAA+TGG | 0.655195 | 3_2:-88127931 | Msa0435100:exon |
| TTAAATGCAGGTGTTTCACG+TGG | 0.656172 | 3_2:-88125779 | Msa0435100:intron |
| ATAAAACCTTCGGAAGAACG+AGG | 0.660037 | 3_2:+88126420 | None:intergenic |
| TATGTCACATAGAATTGCAG+TGG | 0.663579 | 3_2:-88123690 | Msa0435100:CDS |
| TACGCATCCATACAGAACAA+AGG | 0.667502 | 3_2:+88123530 | None:intergenic |
| TAAAACCTTCGGAAGAACGA+GGG | 0.689246 | 3_2:+88126421 | None:intergenic |
| CAAAGACCTTCGAAGCACAA+CGG | 0.690089 | 3_2:-88127788 | Msa0435100:CDS |
| TAGCACCTGCAACAAAAGGG+AGG | 0.690112 | 3_2:+88126345 | None:intergenic |
| TTCTCTTCATACCAGTCACG+GGG | 0.693192 | 3_2:-88125170 | Msa0435100:intron |
| GTACTGGAAGAATAGGACCA+GGG | 0.700205 | 3_2:-88126297 | Msa0435100:CDS |
| TCGATTTCATGAAATCCAAG+GGG | 0.703979 | 3_2:+88127718 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATTATTAAATGAATC+TGG | + | chr3_2:88125253-88125272 | None:intergenic | 10.0% |
| !!! | TAAAGTATTATTTTAGTTTT+TGG | - | chr3_2:88126294-88126313 | Msa0435100:CDS | 10.0% |
| !!! | AAAGTATTATTTTAGTTTTT+GGG | - | chr3_2:88126295-88126314 | Msa0435100:CDS | 10.0% |
| !! | TAATTTATACAACGAATTAT+AGG | + | chr3_2:88124245-88124264 | None:intergenic | 15.0% |
| !! | TAATTCGTTGTATAAATTAA+CGG | - | chr3_2:88124246-88124265 | Msa0435100:intron | 15.0% |
| !! | ATGAAACCAAAATAATAAAA+AGG | + | chr3_2:88126703-88126722 | None:intergenic | 15.0% |
| !! | TTAGTAAAAAAATAGTTACA+CGG | + | chr3_2:88126899-88126918 | None:intergenic | 15.0% |
| !!! | ACTATTTTTTTACTAATTTG+TGG | - | chr3_2:88126903-88126922 | Msa0435100:intron | 15.0% |
| !! | AAAAATAATACTGTTAAAGT+TGG | - | chr3_2:88127255-88127274 | Msa0435100:intron | 15.0% |
| !!! | ATATTTTCTTCTCAAAAAAA+GGG | + | chr3_2:88128128-88128147 | None:intergenic | 15.0% |
| !!! | TAGTTATGTTTTTCCATATT+TGG | - | chr3_2:88124106-88124125 | Msa0435100:intron | 20.0% |
| !!! | CATATTTGGAATTATGAATA+GGG | - | chr3_2:88124120-88124139 | Msa0435100:intron | 20.0% |
| !! | TATAAATTAACGGTAGAATT+TGG | - | chr3_2:88124256-88124275 | Msa0435100:intron | 20.0% |
| !!! | TAACTTTTTTTTCATCTGAT+TGG | - | chr3_2:88124937-88124956 | Msa0435100:intron | 20.0% |
| !!! | CATTTTAATTCTACAAAATC+AGG | + | chr3_2:88125334-88125353 | None:intergenic | 20.0% |
| !!! | TTTTGTTAACAAAATGAACA+CGG | + | chr3_2:88125924-88125943 | None:intergenic | 20.0% |
| !! | TAACACGTATAGATATAAAA+GGG | + | chr3_2:88126463-88126482 | None:intergenic | 20.0% |
| !! | TTAACACGTATAGATATAAA+AGG | + | chr3_2:88126464-88126483 | None:intergenic | 20.0% |
| !!! | TTTTTTAGATTTTTTTCGAC+AGG | + | chr3_2:88126745-88126764 | None:intergenic | 20.0% |
| !! | TAGTAAAAAAATAGTTACAC+GGG | + | chr3_2:88126898-88126917 | None:intergenic | 20.0% |
| !! | ATGAAACTAATATTATTCTG+AGG | - | chr3_2:88127187-88127206 | Msa0435100:intron | 20.0% |
| !! | GGAATCAATTTACAATTTAA+TGG | + | chr3_2:88127902-88127921 | None:intergenic | 20.0% |
| !!! | TAAATTGATTCCAAAGAAAA+AGG | - | chr3_2:88127910-88127929 | Msa0435100:CDS | 20.0% |
| !!! | CATATTTTCTTCTCAAAAAA+AGG | + | chr3_2:88128129-88128148 | None:intergenic | 20.0% |
| !!! | CGCATCATGTAATTTTTTTA+GGG | + | chr3_2:88123540-88123559 | None:intergenic | 25.0% |
| !!! | TCGCATCATGTAATTTTTTT+AGG | + | chr3_2:88123541-88123560 | None:intergenic | 25.0% |
| ! | ATGAAAGCTAGTAACATTAA+CGG | + | chr3_2:88123636-88123655 | None:intergenic | 25.0% |
| ! | TGATCAGGTTATTTATAGTT+TGG | - | chr3_2:88123941-88123960 | Msa0435100:intron | 25.0% |
| ! | CAATAAAGATCAAAACGAAA+AGG | + | chr3_2:88124018-88124037 | None:intergenic | 25.0% |
| ! | CCTATTCATAATTCCAAATA+TGG | + | chr3_2:88124122-88124141 | None:intergenic | 25.0% |
| !! | CCATATTTGGAATTATGAAT+AGG | - | chr3_2:88124119-88124138 | Msa0435100:intron | 25.0% |
| ! | TGTGAACTATGTTTATCAAA+TGG | + | chr3_2:88124781-88124800 | None:intergenic | 25.0% |
| ! | TAGTGACATACTATTTATGA+TGG | + | chr3_2:88125490-88125509 | None:intergenic | 25.0% |
| ! | AATGAATATTGAATGAGTAC+AGG | + | chr3_2:88125513-88125532 | None:intergenic | 25.0% |
| ! | AGGTACACACTATATTAAAT+TGG | + | chr3_2:88125649-88125668 | None:intergenic | 25.0% |
| !! | TTTTGCTAGTATGTATTCTT+AGG | - | chr3_2:88125693-88125712 | Msa0435100:CDS | 25.0% |
| !!! | ATACATTACCAAGTTGATTA+TGG | - | chr3_2:88126015-88126034 | Msa0435100:intron | 25.0% |
| !! | TCAAACTTTTGACATTATGA+TGG | - | chr3_2:88126061-88126080 | Msa0435100:CDS | 25.0% |
| !! | TCATGCAATCTAAAGTTTAA+GGG | + | chr3_2:88126090-88126109 | None:intergenic | 25.0% |
| !! | ATCATGCAATCTAAAGTTTA+AGG | + | chr3_2:88126091-88126110 | None:intergenic | 25.0% |
| !!! | TGCAATATGTTTTGGAAATT+AGG | + | chr3_2:88126125-88126144 | None:intergenic | 25.0% |
| !! | TGTCTGCCTTTTTATTATTT+TGG | - | chr3_2:88126694-88126713 | Msa0435100:intron | 25.0% |
| ! | ATCATTCAAAAAAGGCAATT+TGG | + | chr3_2:88126809-88126828 | None:intergenic | 25.0% |
| ! | CTGATGTTATCATTCAAAAA+AGG | + | chr3_2:88126817-88126836 | None:intergenic | 25.0% |
| ! | AAGGAAAATTAGTGAATTTG+AGG | + | chr3_2:88127038-88127057 | None:intergenic | 25.0% |
| ! | TTAAAACAACTAGGATAACA+TGG | + | chr3_2:88127091-88127110 | None:intergenic | 25.0% |
| ! | AACTTGTGTAACATTAATTG+AGG | - | chr3_2:88127316-88127335 | Msa0435100:intron | 25.0% |
| ! | TTACAAATAGATTCCGAAAT+TGG | + | chr3_2:88127540-88127559 | None:intergenic | 25.0% |
| ! | ACAATTAAATTAACCAGCTT+AGG | - | chr3_2:88127869-88127888 | Msa0435100:CDS | 25.0% |
| ! | TAAAAAAAACAGTGTACCTT+CGG | + | chr3_2:88128060-88128079 | None:intergenic | 25.0% |
| ! | AGAAAATATGTATTACCCAT+TGG | - | chr3_2:88128139-88128158 | Msa0435100:five_prime_UTR | 25.0% |
| ! | TATTAAAAAAAAGGGCCAAT+GGG | + | chr3_2:88128157-88128176 | None:intergenic | 25.0% |
| ! | TTATTAAAAAAAAGGGCCAA+TGG | + | chr3_2:88128158-88128177 | None:intergenic | 25.0% |
| CAGTAAAGTTGTGATTACAA+TGG | - | chr3_2:88123575-88123594 | Msa0435100:three_prime_UTR | 30.0% | |
| TTCGATTTCATGAAATCCAA+GGG | + | chr3_2:88123792-88123811 | None:intergenic | 30.0% | |
| !! | ACCTTTACTTTTGATGGAAT+TGG | - | chr3_2:88123854-88123873 | Msa0435100:CDS | 30.0% |
| TAGTTTGGAGAGTAAAATGT+TGG | - | chr3_2:88123956-88123975 | Msa0435100:intron | 30.0% | |
| !! | GATCTTTATTGTTGTTTACG+TGG | - | chr3_2:88124027-88124046 | Msa0435100:intron | 30.0% |
| ATTCAGTGTGTCTACAAATA+GGG | - | chr3_2:88124143-88124162 | Msa0435100:intron | 30.0% | |
| AAATAGGGATTTGACTCAAA+TGG | - | chr3_2:88124158-88124177 | Msa0435100:intron | 30.0% | |
| ACAATGGTGAAATCCAATAA+GGG | + | chr3_2:88124367-88124386 | None:intergenic | 30.0% | |
| TACAATGGTGAAATCCAATA+AGG | + | chr3_2:88124368-88124387 | None:intergenic | 30.0% | |
| !! | ACCATTGTAGTGTTTTTATG+TGG | - | chr3_2:88124379-88124398 | Msa0435100:intron | 30.0% |
| TCCATAAACTTAAGCAATCA+TGG | + | chr3_2:88124408-88124427 | None:intergenic | 30.0% | |
| ATGATTGCTTAAGTTTATGG+AGG | - | chr3_2:88124407-88124426 | Msa0435100:intron | 30.0% | |
| TCATATATAGACACAGAAGA+GGG | + | chr3_2:88124629-88124648 | None:intergenic | 30.0% | |
| ACGTCAAAAAGTTCATTAAG+TGG | + | chr3_2:88124696-88124715 | None:intergenic | 30.0% | |
| TGATAAACATAGTTCACATG+TGG | - | chr3_2:88124783-88124802 | Msa0435100:intron | 30.0% | |
| !! | TGCTTAACTCGTATTTTTGT+GGG | + | chr3_2:88124819-88124838 | None:intergenic | 30.0% |
| !! | TTGCTTAACTCGTATTTTTG+TGG | + | chr3_2:88124820-88124839 | None:intergenic | 30.0% |
| TGTAATCAGTTTGATAGAGT+TGG | - | chr3_2:88124843-88124862 | Msa0435100:intron | 30.0% | |
| CTTAGAAGTTCAATAACACA+TGG | + | chr3_2:88124915-88124934 | None:intergenic | 30.0% | |
| !! | GGTAACTTTTTCCTTTAAGA+CGG | + | chr3_2:88125067-88125086 | None:intergenic | 30.0% |
| AGATGTACAACATAAGTTTC+AGG | + | chr3_2:88125357-88125376 | None:intergenic | 30.0% | |
| GAAACTTATGTTGTACATCT+TGG | - | chr3_2:88125357-88125376 | Msa0435100:intron | 30.0% | |
| ! | CATGATATTTTCATCCAATG+CGG | - | chr3_2:88125554-88125573 | Msa0435100:CDS | 30.0% |
| TGTAAAAAAGTGAACAGAAG+AGG | + | chr3_2:88125669-88125688 | None:intergenic | 30.0% | |
| TAGTATGTATTCTTAGGTCT+AGG | - | chr3_2:88125699-88125718 | Msa0435100:CDS | 30.0% | |
| AGTATGTATTCTTAGGTCTA+GGG | - | chr3_2:88125700-88125719 | Msa0435100:CDS | 30.0% | |
| ACAACTATAGCATGCAAAAA+TGG | + | chr3_2:88125826-88125845 | None:intergenic | 30.0% | |
| ! | TTTTTGCATGCTATAGTTGT+AGG | - | chr3_2:88125826-88125845 | Msa0435100:intron | 30.0% |
| ! | TTTTGCATGCTATAGTTGTA+GGG | - | chr3_2:88125827-88125846 | Msa0435100:intron | 30.0% |
| TGTTTCAGAGAAAAAGATTC+AGG | - | chr3_2:88125897-88125916 | Msa0435100:intron | 30.0% | |
| !! | ACAAAGTTTGCTAGTTTAGA+AGG | - | chr3_2:88126233-88126252 | Msa0435100:intron | 30.0% |
| !! | CAAAGTTTGCTAGTTTAGAA+GGG | - | chr3_2:88126234-88126253 | Msa0435100:intron | 30.0% |
| ACAACTCAAATATCTAGTGA+AGG | + | chr3_2:88126423-88126442 | None:intergenic | 30.0% | |
| ACGTATAGATATAAAAGGGA+AGG | + | chr3_2:88126459-88126478 | None:intergenic | 30.0% | |
| GTATCATGTACATTTCCTTA+AGG | + | chr3_2:88126599-88126618 | None:intergenic | 30.0% | |
| !! | AGCATGTCTTTAAAACAACT+AGG | + | chr3_2:88127100-88127119 | None:intergenic | 30.0% |
| CAATCATGTTATCAAAGCAT+TGG | + | chr3_2:88127232-88127251 | None:intergenic | 30.0% | |
| AGTTGCAACTAACAAATGAA+TGG | + | chr3_2:88127300-88127319 | None:intergenic | 30.0% | |
| ! | GCTGACTTATAATCAATTCT+TGG | - | chr3_2:88127340-88127359 | Msa0435100:intron | 30.0% |
| ! | TTTCCGTTAAAAACTTTTGC+AGG | - | chr3_2:88127606-88127625 | Msa0435100:CDS | 30.0% |
| ! | TTCCGTTAAAAACTTTTGCA+GGG | - | chr3_2:88127607-88127626 | Msa0435100:CDS | 30.0% |
| TGCACATAACATTGTGAAAT+TGG | - | chr3_2:88127717-88127736 | Msa0435100:CDS | 30.0% | |
| TTCCAAAGAAAAAGGAAGAA+TGG | - | chr3_2:88127918-88127937 | Msa0435100:exon | 30.0% | |
| ! | AACCATTCTTCCTTTTTCTT+TGG | + | chr3_2:88127923-88127942 | None:intergenic | 30.0% |
| AAGAAAAAGGAAGAATGGTT+CGG | - | chr3_2:88127923-88127942 | Msa0435100:exon | 30.0% | |
| !!! | ACATGTTTTTTATCTTAGCG+AGG | + | chr3_2:88128037-88128056 | None:intergenic | 30.0% |
| AAGATAAAAAACATGTCCGA+AGG | - | chr3_2:88128041-88128060 | Msa0435100:five_prime_UTR | 30.0% | |
| AGAACAACTCGATTCAAAAG+AGG | - | chr3_2:88123502-88123521 | Msa0435100:three_prime_UTR | 35.0% | |
| TTGCATGAATCGGAATTGTT+CGG | + | chr3_2:88123693-88123712 | None:intergenic | 35.0% | |
| TCGATTTCATGAAATCCAAG+GGG | + | chr3_2:88123791-88123810 | None:intergenic | 35.0% | |
| CTTCGATTTCATGAAATCCA+AGG | + | chr3_2:88123793-88123812 | None:intergenic | 35.0% | |
| GCCAATTCCATCAAAAGTAA+AGG | + | chr3_2:88123858-88123877 | None:intergenic | 35.0% | |
| AGTGTTAAATTAATGCTGCG+TGG | - | chr3_2:88124062-88124081 | Msa0435100:intron | 35.0% | |
| GATTCAGTGTGTCTACAAAT+AGG | - | chr3_2:88124142-88124161 | Msa0435100:intron | 35.0% | |
| ! | TCATGGATTGTGCTCATTTA+AGG | - | chr3_2:88124209-88124228 | Msa0435100:intron | 35.0% |
| ! | TGATGTAAGAGAAGCTTTGA+CGG | - | chr3_2:88124305-88124324 | Msa0435100:intron | 35.0% |
| TTTAAGAAACCGTCCCTTAT+TGG | - | chr3_2:88124351-88124370 | Msa0435100:intron | 35.0% | |
| GCCACATAAAAACACTACAA+TGG | + | chr3_2:88124383-88124402 | None:intergenic | 35.0% | |
| GCCATGATTGCTTAAGTTTA+TGG | - | chr3_2:88124404-88124423 | Msa0435100:intron | 35.0% | |
| CATATATAGACACAGAAGAG+GGG | + | chr3_2:88124628-88124647 | None:intergenic | 35.0% | |
| CTCATATATAGACACAGAAG+AGG | + | chr3_2:88124630-88124649 | None:intergenic | 35.0% | |
| ! | ACTTTTTGACGTTGCTCTAT+TGG | - | chr3_2:88124704-88124723 | Msa0435100:intron | 35.0% |
| TCTAGGCATTTCATACAGAT+TGG | + | chr3_2:88124878-88124897 | None:intergenic | 35.0% | |
| ATTCTAAATACTGCTGTAGC+TGG | - | chr3_2:88125027-88125046 | Msa0435100:intron | 35.0% | |
| TGAATCCACCATAAAACCTT+CGG | + | chr3_2:88125099-88125118 | None:intergenic | 35.0% | |
| TGTACATCTTGGAAATAGCA+AGG | - | chr3_2:88125368-88125387 | Msa0435100:intron | 35.0% | |
| TGGAAATAGCAAGGAACTTA+TGG | - | chr3_2:88125377-88125396 | Msa0435100:intron | 35.0% | |
| AGAAGATAGTGTAGCAAAGA+GGG | - | chr3_2:88125407-88125426 | Msa0435100:intron | 35.0% | |
| CAAGGCAAATTGACATTGTT+TGG | - | chr3_2:88125592-88125611 | Msa0435100:CDS | 35.0% | |
| !!! | GTCTAGGGTTTTTTAAATGC+AGG | - | chr3_2:88125715-88125734 | Msa0435100:CDS | 35.0% |
| TGCTCAGACAAAGTTTGAAA+TGG | - | chr3_2:88125861-88125880 | Msa0435100:intron | 35.0% | |
| ACATCAATAGAAGCTAGGTA+AGG | + | chr3_2:88125961-88125980 | None:intergenic | 35.0% | |
| CAAGAACATCAATAGAAGCT+AGG | + | chr3_2:88125966-88125985 | None:intergenic | 35.0% | |
| TGTTCTTGTTCAGAATTCTC+AGG | - | chr3_2:88125978-88125997 | Msa0435100:intron | 35.0% | |
| AACTGAATCAATTCGGAAGT+GGG | + | chr3_2:88126148-88126167 | None:intergenic | 35.0% | |
| ATGGCAGAACTGAATCAATT+CGG | + | chr3_2:88126155-88126174 | None:intergenic | 35.0% | |
| ACAAATCGATACGAGAAGAA+AGG | + | chr3_2:88126191-88126210 | None:intergenic | 35.0% | |
| ! | TGTTTGACTTCCATGATGTA+TGG | - | chr3_2:88126208-88126227 | Msa0435100:intron | 35.0% |
| AACTTTGTCTCCATACATCA+TGG | + | chr3_2:88126221-88126240 | None:intergenic | 35.0% | |
| TTTAGAAGGGACTTGAAGAT+AGG | - | chr3_2:88126247-88126266 | Msa0435100:intron | 35.0% | |
| AAGGATAACCATAGAAGCAA+TGG | - | chr3_2:88126371-88126390 | Msa0435100:CDS | 35.0% | |
| GATAATGAGAAAACTGACAC+AGG | + | chr3_2:88126497-88126516 | None:intergenic | 35.0% | |
| TAAGGAAACAACAACTGAGT+AGG | + | chr3_2:88126856-88126875 | None:intergenic | 35.0% | |
| ! | TGTGGATTCAACTGAGTTTT+AGG | - | chr3_2:88126921-88126940 | Msa0435100:intron | 35.0% |
| TATCTTCATTTCTTCGCCAA+GGG | + | chr3_2:88126959-88126978 | None:intergenic | 35.0% | |
| TTATCTTCATTTCTTCGCCA+AGG | + | chr3_2:88126960-88126979 | None:intergenic | 35.0% | |
| ACAAAAGAACAGTGCAAATG+TGG | + | chr3_2:88127002-88127021 | None:intergenic | 35.0% | |
| AAACAACTAGGATAACATGG+TGG | + | chr3_2:88127088-88127107 | None:intergenic | 35.0% | |
| AATAACCAGCTGAACTAATG+AGG | + | chr3_2:88127382-88127401 | None:intergenic | 35.0% | |
| !! | TGTTTCTTGCTGTTTCAACT+TGG | - | chr3_2:88127509-88127528 | Msa0435100:intron | 35.0% |
| ! | TGCCCTGCAAAAGTTTTTAA+CGG | + | chr3_2:88127612-88127631 | None:intergenic | 35.0% |
| TTCACAATGTTATGTGCAAG+AGG | + | chr3_2:88127715-88127734 | None:intergenic | 35.0% | |
| CTGCAATTCTATGTGACATA+TGG | + | chr3_2:88127816-88127835 | None:intergenic | 35.0% | |
| TATGTCACATAGAATTGCAG+TGG | - | chr3_2:88127816-88127835 | Msa0435100:CDS | 35.0% | |
| ! | TGGTTCTCAAGGAAGTTTTA+CGG | - | chr3_2:88127836-88127855 | Msa0435100:CDS | 35.0% |
| !! | TAGCATTGGCGAAGAAAAGA+TGG | - | chr3_2:88123610-88123629 | Msa0435100:three_prime_UTR | 40.0% |
| !! | CTTTGTGGTGTTGCATGAAT+CGG | + | chr3_2:88123703-88123722 | None:intergenic | 40.0% |
| ! | GAAATCGAAGCTAGTTCTCA+TGG | - | chr3_2:88123803-88123822 | Msa0435100:CDS | 40.0% |
| !! | TGGTGGACCTTTACTTTTGA+TGG | - | chr3_2:88123848-88123867 | Msa0435100:CDS | 40.0% |
| ! | GAATTGGCGTTTTTGTTGAG+AGG | - | chr3_2:88123870-88123889 | Msa0435100:CDS | 40.0% |
| !! | GTGTTGGTTCTGATGTTGTT+TGG | - | chr3_2:88123892-88123911 | Msa0435100:intron | 40.0% |
| ATGTTCAGCAGGATACTGAT+TGG | + | chr3_2:88123922-88123941 | None:intergenic | 40.0% | |
| ATAACCTGATCATGTTCAGC+AGG | + | chr3_2:88123933-88123952 | None:intergenic | 40.0% | |
| GAGAGTAAAATGTTGGACAG+AGG | - | chr3_2:88123963-88123982 | Msa0435100:intron | 40.0% | |
| !! | CTGCGTGGAAATGTTTTAAG+AGG | - | chr3_2:88124077-88124096 | Msa0435100:intron | 40.0% |
| TCCACATGTGTAGCAAATCA+TGG | - | chr3_2:88124192-88124211 | Msa0435100:intron | 40.0% | |
| !! | TCCATGATTTGCTACACATG+TGG | + | chr3_2:88124196-88124215 | None:intergenic | 40.0% |
| ! | TAACGGTAGAATTTGGTGAG+AGG | - | chr3_2:88124263-88124282 | Msa0435100:intron | 40.0% |
| ! | GATGTAAGAGAAGCTTTGAC+GGG | - | chr3_2:88124306-88124325 | Msa0435100:intron | 40.0% |
| TGGTGAAATCCAATAAGGGA+CGG | + | chr3_2:88124363-88124382 | None:intergenic | 40.0% | |
| !! | GCTCTATTGGAGTTGATAGT+TGG | - | chr3_2:88124717-88124736 | Msa0435100:intron | 40.0% |
| AACACATGGATATGAACTGC+AGG | + | chr3_2:88124901-88124920 | None:intergenic | 40.0% | |
| !! | TCATCTGATTGGCTTCTGAT+AGG | - | chr3_2:88124948-88124967 | Msa0435100:intron | 40.0% |
| TACAGCTCTTAAAGCTGATC+TGG | - | chr3_2:88125002-88125021 | Msa0435100:intron | 40.0% | |
| TAAAACCTTCGGAAGAACGA+GGG | + | chr3_2:88125088-88125107 | None:intergenic | 40.0% | |
| ATAAAACCTTCGGAAGAACG+AGG | + | chr3_2:88125089-88125108 | None:intergenic | 40.0% | |
| ! | TCGTTCTTCCGAAGGTTTTA+TGG | - | chr3_2:88125088-88125107 | Msa0435100:intron | 40.0% |
| !! | TTCTTCCGAAGGTTTTATGG+TGG | - | chr3_2:88125091-88125110 | Msa0435100:intron | 40.0% |
| GCGAGGGAATTATTTCAAAG+AGG | - | chr3_2:88125125-88125144 | Msa0435100:CDS | 40.0% | |
| TCATAGCACCTGCAACAAAA+GGG | + | chr3_2:88125167-88125186 | None:intergenic | 40.0% | |
| ATCATAGCACCTGCAACAAA+AGG | + | chr3_2:88125168-88125187 | None:intergenic | 40.0% | |
| CACATATAACTGCAGAGTAC+TGG | - | chr3_2:88125193-88125212 | Msa0435100:intron | 40.0% | |
| TACAGTCACACAGAACACAT+AGG | + | chr3_2:88125279-88125298 | None:intergenic | 40.0% | |
| CAGAAGATAGTGTAGCAAAG+AGG | - | chr3_2:88125406-88125425 | Msa0435100:intron | 40.0% | |
| TTAAATGCAGGTGTTTCACG+TGG | - | chr3_2:88125727-88125746 | Msa0435100:CDS | 40.0% | |
| ! | AACTTTCATGAAAGGCACGA+AGG | + | chr3_2:88125771-88125790 | None:intergenic | 40.0% |
| GAGCTGCAAACTTTCATGAA+AGG | + | chr3_2:88125779-88125798 | None:intergenic | 40.0% | |
| TGAAAGTTTGCAGCTCATTC+AGG | - | chr3_2:88125783-88125802 | Msa0435100:intron | 40.0% | |
| TGTTAACAAAACCCTGACAG+TGG | - | chr3_2:88125933-88125952 | Msa0435100:intron | 40.0% | |
| GCTCTGTTCCATAATCAACT+TGG | + | chr3_2:88126026-88126045 | None:intergenic | 40.0% | |
| ! | GAAGTGGGTGCAATATGTTT+TGG | + | chr3_2:88126133-88126152 | None:intergenic | 40.0% |
| GAACTGAATCAATTCGGAAG+TGG | + | chr3_2:88126149-88126168 | None:intergenic | 40.0% | |
| TTCAGTTCTGCCATCTTCAT+TGG | - | chr3_2:88126161-88126180 | Msa0435100:CDS | 40.0% | |
| ! | TGGTATGAAGAGAAGCACAT+TGG | + | chr3_2:88126330-88126349 | None:intergenic | 40.0% |
| ACGAAATGCCATTGCTTCTA+TGG | + | chr3_2:88126382-88126401 | None:intergenic | 40.0% | |
| TGGCTAGAAATCACACCTTA+AGG | - | chr3_2:88126581-88126600 | Msa0435100:intron | 40.0% | |
| !! | TTTTTCGACAGGAGTGATAG+TGG | + | chr3_2:88126734-88126753 | None:intergenic | 40.0% |
| GTTTCCTTATGCATGCCAAT+TGG | - | chr3_2:88126867-88126886 | Msa0435100:intron | 40.0% | |
| ! | TAGGCACTTGAATTTTCCCT+TGG | - | chr3_2:88126940-88126959 | Msa0435100:intron | 40.0% |
| ! | TAGGATAACATGGTGGAGAA+AGG | + | chr3_2:88127081-88127100 | None:intergenic | 40.0% |
| AACGTAGGAATACCGAATCA+GGG | - | chr3_2:88127126-88127145 | Msa0435100:intron | 40.0% | |
| CAACTTGGCTACTCCAATTT+CGG | - | chr3_2:88127524-88127543 | Msa0435100:intron | 40.0% | |
| TAGAATTGCAGTGGTTCTCA+AGG | - | chr3_2:88127825-88127844 | Msa0435100:CDS | 40.0% | |
| ! | TCTCAAGGAAGTTTTACGGA+AGG | - | chr3_2:88127840-88127859 | Msa0435100:CDS | 40.0% |
| TAATGGTGAAGTTCCTAAGC+TGG | + | chr3_2:88127885-88127904 | None:intergenic | 40.0% | |
| CCATACAGAACAAAGGAAGT+GGG | + | chr3_2:88127972-88127991 | None:intergenic | 40.0% | |
| TCCATACAGAACAAAGGAAG+TGG | + | chr3_2:88127973-88127992 | None:intergenic | 40.0% | |
| TACGCATCCATACAGAACAA+AGG | + | chr3_2:88127979-88127998 | None:intergenic | 40.0% | |
| ! | GTGTACATTTTCACTGGTAC+AGG | + | chr3_2:88128104-88128123 | None:intergenic | 40.0% |
| !! | AAGGGAGTGTACATTTTCAC+TGG | + | chr3_2:88128110-88128129 | None:intergenic | 40.0% |
| TTGTGCTTCGAAGGTCTTTG+TGG | + | chr3_2:88123718-88123737 | None:intergenic | 45.0% | |
| CAAAGACCTTCGAAGCACAA+CGG | - | chr3_2:88123718-88123737 | Msa0435100:CDS | 45.0% | |
| TTCATGAAATCCAAGGGGCT+TGG | + | chr3_2:88123786-88123805 | None:intergenic | 45.0% | |
| TCGCACGAACTATCTCTTTC+TGG | - | chr3_2:88123828-88123847 | Msa0435100:CDS | 45.0% | |
| CACGAACTATCTCTTTCTGG+TGG | - | chr3_2:88123831-88123850 | Msa0435100:CDS | 45.0% | |
| !! | GCGTTTTTGTTGAGAGGTGT+TGG | - | chr3_2:88123876-88123895 | Msa0435100:CDS | 45.0% |
| GTATCCTGCTGAACATGATC+AGG | - | chr3_2:88123926-88123945 | Msa0435100:intron | 45.0% | |
| AATGTTGGACAGAGGAGTTC+AGG | - | chr3_2:88123971-88123990 | Msa0435100:intron | 45.0% | |
| AACATAGTTCACATGTGGCG+TGG | - | chr3_2:88124788-88124807 | Msa0435100:intron | 45.0% | |
| TGGATATGAACTGCAGGTCT+AGG | + | chr3_2:88124895-88124914 | None:intergenic | 45.0% | |
| ! | ACAGCCTTTTCACCTTTTGC+AGG | + | chr3_2:88124979-88124998 | None:intergenic | 45.0% |
| ATACTGCTGTAGCTGGAAAG+TGG | - | chr3_2:88125034-88125053 | Msa0435100:intron | 45.0% | |
| !! | TGGTGGATTCATGAAATGCG+AGG | - | chr3_2:88125108-88125127 | Msa0435100:intron | 45.0% |
| ! | GGTGGATTCATGAAATGCGA+GGG | - | chr3_2:88125109-88125128 | Msa0435100:intron | 45.0% |
| !! | CTGCAGAGTACTGGAAGAAT+AGG | - | chr3_2:88125202-88125221 | Msa0435100:intron | 45.0% |
| ! | AGTACTGGAAGAATAGGACC+AGG | - | chr3_2:88125208-88125227 | Msa0435100:intron | 45.0% |
| GTACTGGAAGAATAGGACCA+GGG | - | chr3_2:88125209-88125228 | Msa0435100:intron | 45.0% | |
| AATAGGACCAGGGAGAGTTT+AGG | - | chr3_2:88125219-88125238 | Msa0435100:intron | 45.0% | |
| ATAGGACCAGGGAGAGTTTA+GGG | - | chr3_2:88125220-88125239 | Msa0435100:intron | 45.0% | |
| AACATACCCTAAACTCTCCC+TGG | + | chr3_2:88125229-88125248 | None:intergenic | 45.0% | |
| GGTTCTTCGTGAGCATGTTA+GGG | - | chr3_2:88125428-88125447 | Msa0435100:intron | 45.0% | |
| GAGCATGTTAGGGAATCTCT+TGG | - | chr3_2:88125438-88125457 | Msa0435100:intron | 45.0% | |
| ATCCAATGCGGTACATGACA+TGG | - | chr3_2:88125566-88125585 | Msa0435100:CDS | 45.0% | |
| AACCATGTCATGTACCGCAT+TGG | + | chr3_2:88125571-88125590 | None:intergenic | 45.0% | |
| CAGGTGTTTCACGTGGTAAA+GGG | - | chr3_2:88125734-88125753 | Msa0435100:CDS | 45.0% | |
| GTTCTGCCATCTTCATTGGT+TGG | - | chr3_2:88126165-88126184 | Msa0435100:CDS | 45.0% | |
| GAAAGGCCAACCAATGAAGA+TGG | + | chr3_2:88126174-88126193 | None:intergenic | 45.0% | |
| GCTTCTCTTCATACCAGTCA+CGG | - | chr3_2:88126334-88126353 | Msa0435100:CDS | 45.0% | |
| CTTCTCTTCATACCAGTCAC+GGG | - | chr3_2:88126335-88126354 | Msa0435100:CDS | 45.0% | |
| TTCTCTTCATACCAGTCACG+GGG | - | chr3_2:88126336-88126355 | Msa0435100:CDS | 45.0% | |
| AAAGGGAAGGTCATATCGAC+AGG | + | chr3_2:88126446-88126465 | None:intergenic | 45.0% | |
| ! | CTTTTGGTCAAGTAGCCTAG+TGG | - | chr3_2:88126561-88126580 | Msa0435100:intron | 45.0% |
| !! | AGGTGTGATTTCTAGCCACT+AGG | + | chr3_2:88126579-88126598 | None:intergenic | 45.0% |
| GTAGCCAATTGGCATGCATA+AGG | + | chr3_2:88126874-88126893 | None:intergenic | 45.0% | |
| ! | GATAACATGGTGGAGAAAGG+TGG | + | chr3_2:88127078-88127097 | None:intergenic | 45.0% |
| ATTCGGTATTCCTACGTTCG+TGG | + | chr3_2:88127124-88127143 | None:intergenic | 45.0% | |
| GAACGTAGGAATACCGAATC+AGG | - | chr3_2:88127125-88127144 | Msa0435100:intron | 45.0% | |
| ACGTAGGAATACCGAATCAG+GGG | - | chr3_2:88127127-88127146 | Msa0435100:intron | 45.0% | |
| CATACATGTCTCCCCTGATT+CGG | + | chr3_2:88127141-88127160 | None:intergenic | 45.0% | |
| CAGGGGAGACATGTATGTTT+CGG | - | chr3_2:88127144-88127163 | Msa0435100:intron | 45.0% | |
| AGTTGGCTGTCAGATGATAC+AGG | - | chr3_2:88127272-88127291 | Msa0435100:intron | 45.0% | |
| AGAGTCCTCATTAGTTCAGC+TGG | - | chr3_2:88127374-88127393 | Msa0435100:intron | 45.0% | |
| ACTGTGGAGATCGTGGTTAA+TGG | - | chr3_2:88127646-88127665 | Msa0435100:CDS | 45.0% | |
| CTGTGGAGATCGTGGTTAAT+GGG | - | chr3_2:88127647-88127666 | Msa0435100:CDS | 45.0% | |
| ATCGTGGTTAATGGGACAAC+CGG | - | chr3_2:88127655-88127674 | Msa0435100:CDS | 45.0% | |
| TGGCAAGTCATGTTGAGAAG+AGG | - | chr3_2:88127737-88127756 | Msa0435100:CDS | 45.0% | |
| TGTTGAGAAGAGGCTGACTA+TGG | - | chr3_2:88127747-88127766 | Msa0435100:CDS | 45.0% | |
| GTTGAGAAGAGGCTGACTAT+GGG | - | chr3_2:88127748-88127767 | Msa0435100:CDS | 45.0% | |
| AGGCTGACTATGGGAAAGAA+AGG | - | chr3_2:88127757-88127776 | Msa0435100:CDS | 45.0% | |
| GGCTGACTATGGGAAAGAAA+GGG | - | chr3_2:88127758-88127777 | Msa0435100:CDS | 45.0% | |
| GGTATGAGAGAGTGAAAGAG+AGG | - | chr3_2:88127779-88127798 | Msa0435100:CDS | 45.0% | |
| GAGAGTGAAAGAGAGGTTTC+TGG | - | chr3_2:88127786-88127805 | Msa0435100:CDS | 45.0% | |
| ! | AGGAAGTTTTACGGAAGGCA+AGG | - | chr3_2:88127845-88127864 | Msa0435100:CDS | 45.0% |
| CCCACTTCCTTTGTTCTGTA+TGG | - | chr3_2:88127969-88127988 | Msa0435100:five_prime_UTR | 45.0% | |
| TGTTCTGTATGGATGCGTAG+TGG | - | chr3_2:88127980-88127999 | Msa0435100:five_prime_UTR | 45.0% | |
| GTTCTGTATGGATGCGTAGT+GGG | - | chr3_2:88127981-88128000 | Msa0435100:five_prime_UTR | 45.0% | |
| !! | TGCGTAGTGGGTTGATGTAT+AGG | - | chr3_2:88127993-88128012 | Msa0435100:five_prime_UTR | 45.0% |
| !!! | TTATTTATTATATATTCTTT+TGG | - | chr3_2:88126545-88126564 | Msa0435100:intron | 5.0% |
| !!! | TAGTTTTTTATTAAAAAAAA+GGG | + | chr3_2:88128165-88128184 | None:intergenic | 5.0% |
| ! | GGCGAAGCATTCAGTAGCAT+TGG | - | chr3_2:88123596-88123615 | Msa0435100:three_prime_UTR | 50.0% |
| CTGATTCCGTTGTGCTTCGA+AGG | + | chr3_2:88123727-88123746 | None:intergenic | 50.0% | |
| ACCAGATGGTGCATTTCCGA+CGG | + | chr3_2:88123763-88123782 | None:intergenic | 50.0% | |
| ! | GGTAGAATTTGGTGAGAGGC+TGG | - | chr3_2:88124267-88124286 | Msa0435100:intron | 50.0% |
| TAGACACAGAAGAGGGGCAA+GGG | + | chr3_2:88124622-88124641 | None:intergenic | 50.0% | |
| ATAGACACAGAAGAGGGGCA+AGG | + | chr3_2:88124623-88124642 | None:intergenic | 50.0% | |
| TGATAGGTCCTGCCTGCAAA+AGG | - | chr3_2:88124964-88124983 | Msa0435100:intron | 50.0% | |
| ! | CCTTTTCACCTTTTGCAGGC+AGG | + | chr3_2:88124975-88124994 | None:intergenic | 50.0% |
| CCTGCCTGCAAAAGGTGAAA+AGG | - | chr3_2:88124972-88124991 | Msa0435100:intron | 50.0% | |
| AGTTACCCTCGTTCTTCCGA+AGG | - | chr3_2:88125080-88125099 | Msa0435100:intron | 50.0% | |
| ! | AAGCACCTCCCTTTTGTTGC+AGG | - | chr3_2:88125156-88125175 | Msa0435100:CDS | 50.0% |
| TAGCACCTGCAACAAAAGGG+AGG | + | chr3_2:88125164-88125183 | None:intergenic | 50.0% | |
| GGGTTCTTCGTGAGCATGTT+AGG | - | chr3_2:88125427-88125446 | Msa0435100:intron | 50.0% | |
| CGGTACATGACATGGTTGCA+AGG | - | chr3_2:88125574-88125593 | Msa0435100:CDS | 50.0% | |
| GCAGGTGTTTCACGTGGTAA+AGG | - | chr3_2:88125733-88125752 | Msa0435100:CDS | 50.0% | |
| TAGGTAAGGAGCCACTGTCA+GGG | + | chr3_2:88125947-88125966 | None:intergenic | 50.0% | |
| CAAAACATTCTCCCCGTGAC+TGG | + | chr3_2:88126350-88126369 | None:intergenic | 50.0% | |
| ! | CAGTCACGGGGAGAATGTTT+TGG | - | chr3_2:88126348-88126367 | Msa0435100:CDS | 50.0% |
| !! | CACGGGGAGAATGTTTTGGA+AGG | - | chr3_2:88126352-88126371 | Msa0435100:CDS | 50.0% |
| AGTGAAGGACGTACCAGTAC+AGG | + | chr3_2:88126408-88126427 | None:intergenic | 50.0% | |
| GTTACACGGGTGTAGCCAAT+TGG | + | chr3_2:88126885-88126904 | None:intergenic | 50.0% | |
| AGGTGGAGGGTTGAGCAAAT+GGG | + | chr3_2:88127061-88127080 | None:intergenic | 50.0% | |
| AAGGTGGAGGGTTGAGCAAA+TGG | + | chr3_2:88127062-88127081 | None:intergenic | 50.0% | |
| ! | ACATGGTGGAGAAAGGTGGA+GGG | + | chr3_2:88127074-88127093 | None:intergenic | 50.0% |
| ! | AACATGGTGGAGAAAGGTGG+AGG | + | chr3_2:88127075-88127094 | None:intergenic | 50.0% |
| AGACATGCTTCCACGAACGT+AGG | - | chr3_2:88127111-88127130 | Msa0435100:intron | 50.0% | |
| TTTGCTGCATCCTGAAGGCA+AGG | - | chr3_2:88127678-88127697 | Msa0435100:CDS | 50.0% | |
| CTTCGCTCGATCGATCGATC+TGG | - | chr3_2:88123424-88123443 | Msa0435100:three_prime_UTR | 55.0% | |
| CAGATTCACCCCTCTTCCGT+CGG | - | chr3_2:88123744-88123763 | Msa0435100:CDS | 55.0% | |
| GTGCATTTCCGACGGAAGAG+GGG | + | chr3_2:88123755-88123774 | None:intergenic | 55.0% | |
| GGTGCATTTCCGACGGAAGA+GGG | + | chr3_2:88123756-88123775 | None:intergenic | 55.0% | |
| TGGTGCATTTCCGACGGAAG+AGG | + | chr3_2:88123757-88123776 | None:intergenic | 55.0% | |
| TCCGTCGGAAATGCACCATC+TGG | - | chr3_2:88123759-88123778 | Msa0435100:CDS | 55.0% | |
| TGCTCTGTAGTCGCAGAGGT+AGG | + | chr3_2:88124536-88124555 | None:intergenic | 55.0% | |
| CAGTTGCTCTGTAGTCGCAG+AGG | + | chr3_2:88124540-88124559 | None:intergenic | 55.0% | |
| TGCTGTAGCTGGAAAGTGGC+TGG | - | chr3_2:88125038-88125057 | Msa0435100:intron | 55.0% | |
| GTGGCTGGATGCCGTCTTAA+AGG | - | chr3_2:88125053-88125072 | Msa0435100:intron | 55.0% | |
| CTAGGTAAGGAGCCACTGTC+AGG | + | chr3_2:88125948-88125967 | None:intergenic | 55.0% | |
| GGCATTTCGTCTGCCTGTAC+TGG | - | chr3_2:88126392-88126411 | Msa0435100:CDS | 55.0% | |
| GGAGGGTTGAGCAAATGGGA+AGG | + | chr3_2:88127057-88127076 | None:intergenic | 55.0% | |
| !! | ACCGGTTTGCTGCATCCTGA+AGG | - | chr3_2:88127673-88127692 | Msa0435100:CDS | 55.0% |
| GCCTTCAGGATGCAGCAAAC+CGG | + | chr3_2:88127677-88127696 | None:intergenic | 55.0% | |
| CTGCATCCTGAAGGCAAGGA+TGG | - | chr3_2:88127682-88127701 | Msa0435100:CDS | 55.0% | |
| GTCACACCATCCTTGCCTTC+AGG | + | chr3_2:88127691-88127710 | None:intergenic | 55.0% | |
| ACCATCTGGTCCAAGCCCCT+TGG | - | chr3_2:88123773-88123792 | Msa0435100:CDS | 60.0% | |
| TCCAAGGGGCTTGGACCAGA+TGG | + | chr3_2:88123777-88123796 | None:intergenic | 60.0% | |
| GTCGCAGAGGTAGGCACAAG+CGG | + | chr3_2:88124527-88124546 | None:intergenic | 60.0% | |
| ACAGAAGAGGGGCAAGGGAC+GGG | + | chr3_2:88124617-88124636 | None:intergenic | 60.0% | |
| CACAGAAGAGGGGCAAGGGA+CGG | + | chr3_2:88124618-88124637 | None:intergenic | 60.0% | |
| !!! | CTTTTGCAGGGCACTGCAGC+TGG | - | chr3_2:88127619-88127638 | Msa0435100:CDS | 60.0% |
| !! | TGGAGGCACTGTGGAGATCG+TGG | - | chr3_2:88127639-88127658 | Msa0435100:CDS | 60.0% |
| AGAAGAGGGGCAAGGGACGG+GGG | + | chr3_2:88124615-88124634 | None:intergenic | 65.0% | |
| CAGAAGAGGGGCAAGGGACG+GGG | + | chr3_2:88124616-88124635 | None:intergenic | 65.0% | |
| !! | TTGCAGGGCACTGCAGCTGG+AGG | - | chr3_2:88127622-88127641 | Msa0435100:CDS | 65.0% |
| !! | CACTGCAGCTGGAGGCACTG+TGG | - | chr3_2:88127630-88127649 | Msa0435100:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 88123344 | 88128184 | 88123344 | ID=Msa0435100;Name=Msa0435100 |
| chr3_2 | mRNA | 88123344 | 88128184 | 88123344 | ID=Msa0435100-mRNA-1;Parent=Msa0435100;Name=Msa0435100-mRNA-1;_AED=0.21;_eAED=0.21;_QI=250|1|1|1|1|1|6|308|466 |
| chr3_2 | exon | 88123344 | 88123900 | 88123344 | ID=Msa0435100-mRNA-1:exon:25900;Parent=Msa0435100-mRNA-1 |
| chr3_2 | exon | 88125115 | 88125177 | 88125115 | ID=Msa0435100-mRNA-1:exon:25899;Parent=Msa0435100-mRNA-1 |
| chr3_2 | exon | 88125529 | 88125791 | 88125529 | ID=Msa0435100-mRNA-1:exon:25898;Parent=Msa0435100-mRNA-1 |
| chr3_2 | exon | 88126030 | 88126184 | 88126030 | ID=Msa0435100-mRNA-1:exon:25897;Parent=Msa0435100-mRNA-1 |
| chr3_2 | exon | 88126287 | 88126558 | 88126287 | ID=Msa0435100-mRNA-1:exon:25896;Parent=Msa0435100-mRNA-1 |
| chr3_2 | exon | 88127536 | 88128184 | 88127536 | ID=Msa0435100-mRNA-1:exon:25895;Parent=Msa0435100-mRNA-1 |
| chr3_2 | five_prime_UTR | 88127935 | 88128184 | 88127935 | ID=Msa0435100-mRNA-1:five_prime_utr;Parent=Msa0435100-mRNA-1 |
| chr3_2 | CDS | 88127536 | 88127934 | 88127536 | ID=Msa0435100-mRNA-1:cds;Parent=Msa0435100-mRNA-1 |
| chr3_2 | CDS | 88126287 | 88126558 | 88126287 | ID=Msa0435100-mRNA-1:cds;Parent=Msa0435100-mRNA-1 |
| chr3_2 | CDS | 88126030 | 88126184 | 88126030 | ID=Msa0435100-mRNA-1:cds;Parent=Msa0435100-mRNA-1 |
| chr3_2 | CDS | 88125529 | 88125791 | 88125529 | ID=Msa0435100-mRNA-1:cds;Parent=Msa0435100-mRNA-1 |
| chr3_2 | CDS | 88125115 | 88125177 | 88125115 | ID=Msa0435100-mRNA-1:cds;Parent=Msa0435100-mRNA-1 |
| chr3_2 | CDS | 88123652 | 88123900 | 88123652 | ID=Msa0435100-mRNA-1:cds;Parent=Msa0435100-mRNA-1 |
| chr3_2 | three_prime_UTR | 88123344 | 88123651 | 88123344 | ID=Msa0435100-mRNA-1:three_prime_utr;Parent=Msa0435100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
