AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0574400


Find 349 sgRNAs with CRISPR-Local

Find 1368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-GE

Chromosome Type Strat End Strand Name
chr4_1 gene 77849117 77868524 77849117 ID=Msa0574400;Name=Msa0574400
chr4_1 mRNA 77849117 77868524 77849117 ID=Msa0574400-mRNA-1;Parent=Msa0574400;Name=Msa0574400-mRNA-1;_AED=0.11;_eAED=0.11;_QI=349|1|1|1|0.96|1|31|367|1209
chr4_1 exon 77849117 77849579 77849117 ID=Msa0574400-mRNA-1:exon:27533;Parent=Msa0574400-mRNA-1
chr4_1 exon 77850200 77850411 77850200 ID=Msa0574400-mRNA-1:exon:27532;Parent=Msa0574400-mRNA-1
chr4_1 exon 77850772 77850813 77850772 ID=Msa0574400-mRNA-1:exon:27531;Parent=Msa0574400-mRNA-1
chr4_1 exon 77850941 77851101 77850941 ID=Msa0574400-mRNA-1:exon:27530;Parent=Msa0574400-mRNA-1
chr4_1 exon 77851213 77851284 77851213 ID=Msa0574400-mRNA-1:exon:27529;Parent=Msa0574400-mRNA-1
chr4_1 exon 77851387 77851568 77851387 ID=Msa0574400-mRNA-1:exon:27528;Parent=Msa0574400-mRNA-1
chr4_1 exon 77851691 77851814 77851691 ID=Msa0574400-mRNA-1:exon:27527;Parent=Msa0574400-mRNA-1
chr4_1 exon 77851913 77851977 77851913 ID=Msa0574400-mRNA-1:exon:27526;Parent=Msa0574400-mRNA-1
chr4_1 exon 77852055 77852254 77852055 ID=Msa0574400-mRNA-1:exon:27525;Parent=Msa0574400-mRNA-1
chr4_1 exon 77852351 77852612 77852351 ID=Msa0574400-mRNA-1:exon:27524;Parent=Msa0574400-mRNA-1
chr4_1 exon 77853829 77853912 77853829 ID=Msa0574400-mRNA-1:exon:27523;Parent=Msa0574400-mRNA-1
chr4_1 exon 77854025 77854082 77854025 ID=Msa0574400-mRNA-1:exon:27522;Parent=Msa0574400-mRNA-1
chr4_1 exon 77854850 77854897 77854850 ID=Msa0574400-mRNA-1:exon:27521;Parent=Msa0574400-mRNA-1
chr4_1 exon 77855002 77855159 77855002 ID=Msa0574400-mRNA-1:exon:27520;Parent=Msa0574400-mRNA-1
chr4_1 exon 77856905 77856955 77856905 ID=Msa0574400-mRNA-1:exon:27519;Parent=Msa0574400-mRNA-1
chr4_1 exon 77857035 77857108 77857035 ID=Msa0574400-mRNA-1:exon:27518;Parent=Msa0574400-mRNA-1
chr4_1 exon 77857241 77857316 77857241 ID=Msa0574400-mRNA-1:exon:27517;Parent=Msa0574400-mRNA-1
chr4_1 exon 77857496 77857540 77857496 ID=Msa0574400-mRNA-1:exon:27516;Parent=Msa0574400-mRNA-1
chr4_1 exon 77857624 77857666 77857624 ID=Msa0574400-mRNA-1:exon:27515;Parent=Msa0574400-mRNA-1
chr4_1 exon 77858673 77858802 77858673 ID=Msa0574400-mRNA-1:exon:27514;Parent=Msa0574400-mRNA-1
chr4_1 exon 77858896 77859091 77858896 ID=Msa0574400-mRNA-1:exon:27513;Parent=Msa0574400-mRNA-1
chr4_1 exon 77859887 77859970 77859887 ID=Msa0574400-mRNA-1:exon:27512;Parent=Msa0574400-mRNA-1
chr4_1 exon 77860065 77860119 77860065 ID=Msa0574400-mRNA-1:exon:27511;Parent=Msa0574400-mRNA-1
chr4_1 exon 77863338 77863558 77863338 ID=Msa0574400-mRNA-1:exon:27510;Parent=Msa0574400-mRNA-1
chr4_1 exon 77864794 77864907 77864794 ID=Msa0574400-mRNA-1:exon:27509;Parent=Msa0574400-mRNA-1
chr4_1 exon 77865269 77865332 77865269 ID=Msa0574400-mRNA-1:exon:27508;Parent=Msa0574400-mRNA-1
chr4_1 exon 77865833 77865933 77865833 ID=Msa0574400-mRNA-1:exon:27507;Parent=Msa0574400-mRNA-1
chr4_1 exon 77866020 77866161 77866020 ID=Msa0574400-mRNA-1:exon:27506;Parent=Msa0574400-mRNA-1
chr4_1 exon 77866508 77866709 77866508 ID=Msa0574400-mRNA-1:exon:27505;Parent=Msa0574400-mRNA-1
chr4_1 exon 77867833 77867926 77867833 ID=Msa0574400-mRNA-1:exon:27504;Parent=Msa0574400-mRNA-1
chr4_1 exon 77868002 77868524 77868002 ID=Msa0574400-mRNA-1:exon:27503;Parent=Msa0574400-mRNA-1
chr4_1 five_prime_UTR 77868176 77868524 77868176 ID=Msa0574400-mRNA-1:five_prime_utr;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77868002 77868175 77868002 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77867833 77867926 77867833 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77866508 77866709 77866508 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77866020 77866161 77866020 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77865833 77865933 77865833 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77865269 77865332 77865269 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77864794 77864907 77864794 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77863338 77863558 77863338 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77860065 77860119 77860065 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77859887 77859970 77859887 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77858896 77859091 77858896 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77858673 77858802 77858673 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77857624 77857666 77857624 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77857496 77857540 77857496 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77857241 77857316 77857241 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77857035 77857108 77857035 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77856905 77856955 77856905 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77855002 77855159 77855002 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77854850 77854897 77854850 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77854025 77854082 77854025 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77853829 77853912 77853829 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77852351 77852612 77852351 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77852055 77852254 77852055 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77851913 77851977 77851913 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77851691 77851814 77851691 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77851387 77851568 77851387 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77851213 77851284 77851213 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77850941 77851101 77850941 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77850772 77850813 77850772 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77850200 77850411 77850200 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 CDS 77849484 77849579 77849484 ID=Msa0574400-mRNA-1:cds;Parent=Msa0574400-mRNA-1
chr4_1 three_prime_UTR 77849117 77849483 77849117 ID=Msa0574400-mRNA-1:three_prime_utr;Parent=Msa0574400-mRNA-1
Gene Sequence

>Msa0574400

ATGTCTCGAATCTTTGAATACTTCGTTGTATGCGGAATCGGTCCTGAGATTCGATCCATTGATGGAAACAAAGGCTACCATGGCCCTGGTTGGATGTATCTTCCTTTTCTTCTCGATCAATTTCCACCTTCTACTCACTCTCTCTATCCTCCTCCACCTCCTCAGCTTCCAACTTGTGTTCTTCCGGCTGGTGTTGAGTTCCATGCTTCAGGATTTGATCCGAACGATCCTTCCACGTTTCCGCGGAGTTATCCTATTGTTTTGACCGAGGGTGATGGTTCAAAAATCTACGTTAGCTGCATTTCTTTCCGGGATCATGTTTGTGAAGATGTTATAGAGGCCTACAGGATACAGGGAAATTCCTATGCTGATAAATGCATCTGTCTAGTTTCACGCTCGCCGTGTTTCAGTGTGCTAAGGAGTACCCTTGAGGAACTGTTTGTTCTATGTTTCTCCCCAACTGGAAGTAGCAAGCCACTATGGGATATTATAGCACATACGGTGTCCAATGTACCTTTGCCTACTCCTGGAAAGGAGCGAGTTCTGTTTGCTATTGAGAATTGTCTGCTTTCTGTAGAGGCCCCACCAAACTGTGGACTTCCCCATGTTGATATATCATTCCAGCCTCTGGTACAATGTTTAGATGTTGACAACTTAATAAATCTTTTTACGGCAGTGCTGCTTGAGAGAAGGATTTTACTTCGGGCTAACAAGTATTCACTTCTAACTCTTGCATCAGAGGCCATTTGTCACCTAATCTATCCATTCCGATGGCAGCATGTATACATTCCATTGCTGTTTTACAGTGGAGTAGATTATATTGATGCTCCTACACCATATATGATGGGACTTCATTCAGGTGTTGATACCACTGGTCTAACAATGGATGGTGTAGTTGTTGTGGACCTTGAGTATAATCGTATCACGACATCAGAGGAAATTCCACCTATTCCTGAGCCAGAATTAAGCTTTTTGCGTGGTGAGATCATGAAGTTATTACATCCCAACGTAATTGGAATTGATGAAATGAAGGCTGGAATATATAGTGCATCTGAGCATTGTCCCAAACTTAGTGCTAAGCAATGGGGAGAAGATCACGACCTTCAGCTAAGGATGATATTCCTAAAGTTCTTTGCAACATTTTTAAGTGGTTACCGCAATTTTCTGGAAAATAGTGCTACTCAGGTCTTCAACACCCAAGCTTTTCTGAAGCAGCGATCTCGAGCTACCAATCAACCGTCAGAGCCCATGATAGCTCAGTTCCTTGACTCCCATGGTTTCTTGGACTACTTGGAGAGAGGGGTAGGTTTCGATGAAAACAACAATACTGTTCTTGATAAGCTACAAGATGCAATTGGAAGGGGTCAAAACCCTATGTCAGTTTTTCCTTCATCCTCGGTAGAGCCTGAGATTTTAACAGTATCAGATTCTGCTGTAGGAATATCAGAGTCTGGTGCCAAATATACTTATGATAGATTTCCTTCAAACATCAGAACCGAAGAGCAAGAAGAAAAGAGGAAGCAGATTCTTGCAACCGTTAGTAATGCCTTCGAGTACTCAGGAAGACATGCTCCAAGCAAGGATCCTTTAGCAGACAATCTTAGCCCACTTGAGAGAGCTGCTGAAAGGGAGCTTATGGTGCTGGACATTAAGGTTAAGCTGCAGGGTTTATGGCTGCGGCTTCTTAAATTGGAAACGACGGATGATCCTCTCTCATCCTTTGAATATGGAACAATACTTGCTTTGATTGAATCGGATGCAGAGGGAATTGGTGGTAGTGGATTTGTTGAATGTATAAGGGAGCATATGCATTCGGGTTGGGACTGTCAGCTCACTGAAGAACAATTTATTGCAGTGAAAGAGTTGCTCAAAACAGCTATCAATCGTGCAACATCACGAAGTGACTGGTTGACCATTAGAGATGCTCTTGAAGTTTCTTCTGATATGTATAAGAAAGACAATAATAATGTGCCAGACTATGTCCAACGTCATCTTATTTCTCTATCGATTTGGGAGGAGCTACGGTTTTGGGAAGGATATTTTGACTTCTTAATGGAGCAATCTTCAAACAAGTCCGCCAACTACGCATCTCTGGTGACTGCACAGCTTGTTGTGTTGGCTTCACACATGGCTGGGCTAGGACTTCCTGACAATGATGCTTGGTATATGATCGAAACAATTGCAGAGAGGAACAGTATCGGATCCAAACAATTTATAAAAATCCGAGGATTCTTGTCTCATATCCAACAACTACGCAATGGATACTGGGGATTCACCTCAACGAAGGCACAGTCTGCACTATCACTTGCATTGCCATCCCCACATTCAAAAAATGCCAAAGATGAGGATCAGCAACCAACTGAGGGAACTGGTGTTGGTAGAAGCTGGGTGCAGAGTATGTTCAGCCGAAATACAACATCTAGATCGAGCTCATTTAGTCGTGTTCGTAAATGGACGTCTGACGGAGGCAATTCAGCCACCAATGAGAATGGGACTCCTCGCAAACAAGATTTATCAGCTGGGGGGCAGAAGAAGCTTCAAACTAATGTCCGCATGCTTAGGGGTCATAATGGTGCCATTACTGCTCTTCACTGTGTTACAAAGAGAGAAGTGTGGGATTTGGTGGGTGACCGTGAAGATGCTGGTTTCTTTATTAGTGGAAGTACAGACTGCTCGGTTAAGATATGGGACCCAAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTAAAAGGGCATACAAGGACTGTCCGTGCCATAAGTTCAGACAGGGGGAAGGTGGTGTCAGGATCGGATGATCAGTCTGTTTTGGTTTGGGATAAGCAGACTACTCAACTTTTAGAAGAGCTTAAAGGCCATGATGGACCGGTCAGCTGTGTACGCACACTCTCAGGTGAGCGTGTGCTAACTGCATCCCATGACGGCACTGTGAAAATGTGGGATGTAAGAACTGATAGATGTGTTGCAACTGTTGGTCGTTGCTCTAGTGCTGTTTTATGCATGGAATATGATGACAATGTGGGAATCTTGGCTGCGGCTGGAAGAGATGTGGTTGCCAACATGTGGGACATTCGTGCTAGTAGGCAGATGCATAAACTTTCAGGACATACACAATGGATAAGGTCACTAAGAATGGTTGGTGACACTGTTATTACTGGTAGTGATGATTGGACGGCAAGAATATGGTCAGTTTCACGAGGAACATGTGATGCTGTCCTAGCATGTCATGCAGGGCCAATATTATGTGTTGAATATTCTTCATTAGATAGAGGAATAATAACCGGGTCAACCGATGGCCTGCTGCGGTTTTGGGAAAATGACGATGGAGGTATAAGGTGTGCGAAAAATGTCACAATTCACAACGCTGCCATATTATCTATCAATGCCGGGGAGCACTGGTTAGGTATTGGAGCAGCTGATAATTCTCTGTCTCTTTTTCATCGGCCCCAAGAGAGACTTGGTAGTTTTTCTGGCACCGGCGGGTCCAAGATGGCTGGTTGGCAGCTTTACAGAACACCACAGAAAACAGTTGCTATGGTAAGATGCATCGCTTCGGACTTGGAGAGGAAAAGGATATGCAGTGGTGGTCGTAATGGGCTTCTAAGACTATGGGATGCAACCATCAATATTTGA

Protein sequence

>Msa0574400

MSRIFEYFVVCGIGPEIRSIDGNKGYHGPGWMYLPFLLDQFPPSTHSLYPPPPPQLPTCVLPAGVEFHASGFDPNDPSTFPRSYPIVLTEGDGSKIYVSCISFRDHVCEDVIEAYRIQGNSYADKCICLVSRSPCFSVLRSTLEELFVLCFSPTGSSKPLWDIIAHTVSNVPLPTPGKERVLFAIENCLLSVEAPPNCGLPHVDISFQPLVQCLDVDNLINLFTAVLLERRILLRANKYSLLTLASEAICHLIYPFRWQHVYIPLLFYSGVDYIDAPTPYMMGLHSGVDTTGLTMDGVVVVDLEYNRITTSEEIPPIPEPELSFLRGEIMKLLHPNVIGIDEMKAGIYSASEHCPKLSAKQWGEDHDLQLRMIFLKFFATFLSGYRNFLENSATQVFNTQAFLKQRSRATNQPSEPMIAQFLDSHGFLDYLERGVGFDENNNTVLDKLQDAIGRGQNPMSVFPSSSVEPEILTVSDSAVGISESGAKYTYDRFPSNIRTEEQEEKRKQILATVSNAFEYSGRHAPSKDPLADNLSPLERAAERELMVLDIKVKLQGLWLRLLKLETTDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHMHSGWDCQLTEEQFIAVKELLKTAINRATSRSDWLTIRDALEVSSDMYKKDNNNVPDYVQRHLISLSIWEELRFWEGYFDFLMEQSSNKSANYASLVTAQLVVLASHMAGLGLPDNDAWYMIETIAERNSIGSKQFIKIRGFLSHIQQLRNGYWGFTSTKAQSALSLALPSPHSKNAKDEDQQPTEGTGVGRSWVQSMFSRNTTSRSSSFSRVRKWTSDGGNSATNENGTPRKQDLSAGGQKKLQTNVRMLRGHNGAITALHCVTKREVWDLVGDREDAGFFISGSTDCSVKIWDPSLRGSELRATLKGHTRTVRAISSDRGKVVSGSDDQSVLVWDKQTTQLLEELKGHDGPVSCVRTLSGERVLTASHDGTVKMWDVRTDRCVATVGRCSSAVLCMEYDDNVGILAAAGRDVVANMWDIRASRQMHKLSGHTQWIRSLRMVGDTVITGSDDWTARIWSVSRGTCDAVLACHAGPILCVEYSSLDRGIITGSTDGLLRFWENDDGGIRCAKNVTIHNAAILSINAGEHWLGIGAADNSLSLFHRPQERLGSFSGTGGSKMAGWQLYRTPQKTVAMVRCIASDLERKRICSGGRNGLLRLWDATINI*