AlfalfaGEDB | Msa0435770

M. sativa cultivar zhongmu-4 / Msa0435770

KEGG: K03033
GO: GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009506 GO:0009987 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369
PFAM: PF01399.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0435770	XP_003603813.1	99.184	490	4	0	1	490	1	490	0.0	1004

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0435770	sp\|P93768\|PSMD3_TOBAC	85.947	491	65	2	1	490	1	488	0.0	827

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0435770	G7J5U6	99.184	490	4	0	1	490	1	490	0.0	1004

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0385590	Msa0435770	0.962325	9.634701e-121	-8.615850e-47
Msa0435770	Msa0562660	0.815417	9.343477e-52	-8.615850e-47
Msa0435770	Msa0801670	0.803685	3.098246e-49	-8.615850e-47
Msa0435770	Msa0899970	0.801745	7.787675e-49	-8.615850e-47
Msa0435770	Msa1030800	0.812296	4.552271e-51	-8.615850e-47
Msa0435770	Msa1155170	-0.802753	4.831401e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0435770	MtrunA17_Chr3g0143291	99.184	490	4	0	1	490	1	490	0.0	1004
Msa0435770	MtrunA17_Chr1g0157071	85.773	485	55	5	1	482	1	474	0.0	792

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0435770	AT1G20200.1	82.857	490	82	1	1	490	1	488	0.0	811
Msa0435770	AT1G75990.1	81.837	490	86	1	1	490	1	487	0.0	787

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Find 130 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGACCCAACTCATCA+TGG	0.555876	3_2:-89118930	None:intergenic
AAAGCTCCAGTTGCAGCTCG+GGG	0.611705	3_2:+89119445	Msa0435770:CDS
AAATGGGTGGATGGTGTCTA+AGG	0.451020	3_2:+89121350	Msa0435770:CDS
AACAGGCTGAGATTTCCATA+TGG	0.551382	3_2:-89121742	None:intergenic
AACTTCCTTCGAGTAAGAAC+CGG	0.493423	3_2:-89117316	None:intergenic
AAGTGTTTAGCTGTAGGGGT+AGG	0.526202	3_2:-89118461	None:intergenic
ACAACAGCAAGAGCAGGAAC+TGG	0.505747	3_2:+89121527	Msa0435770:CDS
ACAGCTCCAAATCTCCAATG+CGG	0.755080	3_2:-89121080	None:intergenic
ACATTTGTAAGCTCAAAGTA+AGG	0.517576	3_2:-89119574	None:intergenic
ACCCAACTCATCATGGCGAA+GGG	0.614807	3_2:-89118923	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAACACAAGTTTGTACCTT+GGG	-	chr3_2:89117474-89117493	None:intergenic	30.0%
ATTAACACAAGTTTGTACCT+TGG	-	chr3_2:89117475-89117494	None:intergenic	30.0%
TTAAATCTACCATTGCATTC+AGG	+	chr3_2:89117575-89117594	Msa0435770:intron	30.0%
TAAATCTACCATTGCATTCA+GGG	+	chr3_2:89117576-89117595	Msa0435770:intron	30.0%
CGTAGTTTCGATTAAGAATT+AGG	-	chr3_2:89117788-89117807	None:intergenic	30.0%
AATTCTTAATCGAAACTACG+AGG	+	chr3_2:89117788-89117807	Msa0435770:intron	30.0%
ATTCTTAATCGAAACTACGA+GGG	+	chr3_2:89117789-89117808	Msa0435770:intron	30.0%
TGATCAGAAAAAATACAACG+AGG	+	chr3_2:89118535-89118554	Msa0435770:CDS	30.0%
ATCAATAAGCTTCATCACAA+GGG	-	chr3_2:89119228-89119247	None:intergenic	30.0%
AATCAATAAGCTTCATCACA+AGG	-	chr3_2:89119229-89119248	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	89116992	89122018	89116992	ID=Msa0435770;Name=Msa0435770
chr3_2	mRNA	89116992	89122018	89116992	ID=Msa0435770-mRNA-1;Parent=Msa0435770;Name=Msa0435770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=131\|1\|1\|1\|1\|1\|8\|431\|490
chr3_2	exon	89116992	89117201	89116992	ID=Msa0435770-mRNA-1:exon:26333;Parent=Msa0435770-mRNA-1
chr3_2	exon	89117286	89117476	89117286	ID=Msa0435770-mRNA-1:exon:26334;Parent=Msa0435770-mRNA-1
chr3_2	exon	89118410	89118556	89118410	ID=Msa0435770-mRNA-1:exon:26335;Parent=Msa0435770-mRNA-1
chr3_2	exon	89118645	89118781	89118645	ID=Msa0435770-mRNA-1:exon:26336;Parent=Msa0435770-mRNA-1
chr3_2	exon	89118894	89118948	89118894	ID=Msa0435770-mRNA-1:exon:26337;Parent=Msa0435770-mRNA-1
chr3_2	exon	89119026	89119136	89119026	ID=Msa0435770-mRNA-1:exon:26338;Parent=Msa0435770-mRNA-1
chr3_2	exon	89119355	89119594	89119355	ID=Msa0435770-mRNA-1:exon:26339;Parent=Msa0435770-mRNA-1
chr3_2	exon	89121075	89122018	89121075	ID=Msa0435770-mRNA-1:exon:26340;Parent=Msa0435770-mRNA-1
chr3_2	five_prime_UTR	89116992	89117122	89116992	ID=Msa0435770-mRNA-1:five_prime_utr;Parent=Msa0435770-mRNA-1
chr3_2	CDS	89117123	89117201	89117123	ID=Msa0435770-mRNA-1:cds;Parent=Msa0435770-mRNA-1
chr3_2	CDS	89117286	89117476	89117286	ID=Msa0435770-mRNA-1:cds;Parent=Msa0435770-mRNA-1
chr3_2	CDS	89118410	89118556	89118410	ID=Msa0435770-mRNA-1:cds;Parent=Msa0435770-mRNA-1
chr3_2	CDS	89118645	89118781	89118645	ID=Msa0435770-mRNA-1:cds;Parent=Msa0435770-mRNA-1
chr3_2	CDS	89118894	89118948	89118894	ID=Msa0435770-mRNA-1:cds;Parent=Msa0435770-mRNA-1
chr3_2	CDS	89119026	89119136	89119026	ID=Msa0435770-mRNA-1:cds;Parent=Msa0435770-mRNA-1
chr3_2	CDS	89119355	89119594	89119355	ID=Msa0435770-mRNA-1:cds;Parent=Msa0435770-mRNA-1
chr3_2	CDS	89121075	89121587	89121075	ID=Msa0435770-mRNA-1:cds;Parent=Msa0435770-mRNA-1
chr3_2	three_prime_UTR	89121588	89122018	89121588	ID=Msa0435770-mRNA-1:three_prime_utr;Parent=Msa0435770-mRNA-1

Gene Sequence

>Msa0435770

ATGACTCAAGATCTCGAGATGAAAGATCGTTCAACTCCTTCGAATTCCGTTTCTCCACAAGTTCCATCTACTTTGCAGCATTTGAAGGAGATAGCGTCCGTTATTGAGACCGGTTCTTACTCGAAGGAAGTTCGTAGAATTGCTCGTGCTGTTCGTCTTACAATTGCATTGAGGAAGAAATTAACAGCTTCTGTTATATCTTCTTTTCTCGATCATGTTCTCACTCCTGGTTCTGAACCTCATGCTAAATTGTCTGCGTATCTTCCCAAGGAGGATGATCATGAGATGGAGGTGGACGCCGCAACATCTTCCATTCAAACCCCTACCCCTACAGCTAAACACTTGTTGCCTGAGCTAGAAATTTACTGTTACCTGCTTGTACTACTTTTTCTGATTGATCAGAAAAAATACAACGAGGCCAAAGCTTGTTCTTCAGCTAGTGTTGCTTGGCTGAAGAATGTGAACAGAAGAACTGTCGATGTTATTGCATCTAGGCTATTTTTTTACTATTCATATAGCCATGAACTTACTGGAGATCTGGCTGAAATTCGGGGAAACCTACTTGCATTGCATCGGATTGCCACCCTTCGCCATGATGAGTTGGGTCAGGAAACCCTTCTTAATTTGCTGCTTCGCAACTATCTTCACTACAACCTATATGACCAGGCAGAGAAGTTGAGGTCAAAGGCACCACGATTTGAAGCACATTCAAACCAGCAGTTCTGTCGTTATCTCTTCTACCTCGGGAAAATTCGGACTATTCAATTGGAGTATACAGATGCAAAAGAGTCTCTCCTGCAAGCTGCTCGTAAAGCTCCAGTTGCAGCTCGGGGTTTTCGAATTCAATGTAACAAGTGGGCTATCATAGTGCGTTTACTGTTGGGAGAAATACCTGAGCGAACTGTCTTTATGCAGAAAGGAATGGAGAAAGCGCTAAGACCTTACTTTGAGCTTACAAATGCTGTCCGCATTGGAGATTTGGAGCTGTTTAGGAACATTGCAGATAAGTTTGCAACCACCTTCAGTGCAGACGGAACTCATAATTTGATTGTTCGTCTCCGACATAATGTCATCAGGACTGGTTTACGTAACATCAGCATCTCCTATTCTCGCATCTCACTAGCTGATGTTGCTAAAAAGTTGAGGTTGGACTCGCCAAATCCTGTTGCTGATGCTGAGAGCATTGTGTCAAAGGCTATTCGTGATGGGGCAATTGATGCTACATTGGATCATGCAAATGGGTGGATGGTGTCTAAGGAAACAGGAGATATTTACTCCACACATGAGCCTCAGCTGGCTTTCAATTCTCGAATTGCATTCTGTCTTAACATGCACAATGAAGCTGTTAGAGCACTTCGTTTTCCACCAAACACACACAAAGAAAAAGAAAGTGCTGAAAAGAGAAGAGAGAGACAACAGCAAGAGCAGGAACTGGCCAAACATATTGCAGAGGAGGATGATGATGATTTCTGA

Protein sequence

>Msa0435770

MTQDLEMKDRSTPSNSVSPQVPSTLQHLKEIASVIETGSYSKEVRRIARAVRLTIALRKKLTASVISSFLDHVLTPGSEPHAKLSAYLPKEDDHEMEVDAATSSIQTPTPTAKHLLPELEIYCYLLVLLFLIDQKKYNEAKACSSASVAWLKNVNRRTVDVIASRLFFYYSYSHELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRNIADKFATTFSADGTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSPNPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTHEPQLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF*