Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435770 | XP_003603813.1 | 99.184 | 490 | 4 | 0 | 1 | 490 | 1 | 490 | 0.0 | 1004 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435770 | sp|P93768|PSMD3_TOBAC | 85.947 | 491 | 65 | 2 | 1 | 490 | 1 | 488 | 0.0 | 827 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435770 | G7J5U6 | 99.184 | 490 | 4 | 0 | 1 | 490 | 1 | 490 | 0.0 | 1004 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0385590 | Msa0435770 | 0.962325 | 9.634701e-121 | -8.615850e-47 |
| Msa0435770 | Msa0562660 | 0.815417 | 9.343477e-52 | -8.615850e-47 |
| Msa0435770 | Msa0801670 | 0.803685 | 3.098246e-49 | -8.615850e-47 |
| Msa0435770 | Msa0899970 | 0.801745 | 7.787675e-49 | -8.615850e-47 |
| Msa0435770 | Msa1030800 | 0.812296 | 4.552271e-51 | -8.615850e-47 |
| Msa0435770 | Msa1155170 | -0.802753 | 4.831401e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435770 | MtrunA17_Chr3g0143291 | 99.184 | 490 | 4 | 0 | 1 | 490 | 1 | 490 | 0.0 | 1004 |
| Msa0435770 | MtrunA17_Chr1g0157071 | 85.773 | 485 | 55 | 5 | 1 | 482 | 1 | 474 | 0.0 | 792 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435770 | AT1G20200.1 | 82.857 | 490 | 82 | 1 | 1 | 490 | 1 | 488 | 0.0 | 811 |
| Msa0435770 | AT1G75990.1 | 81.837 | 490 | 86 | 1 | 1 | 490 | 1 | 487 | 0.0 | 787 |
Find 130 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGGGATAATTGTGATTT+TGG | 0.152682 | 3_2:+89121799 | Msa0435770:three_prime_UTR |
| TTCTATGGTTTGTTTCTTTC+GGG | 0.158911 | 3_2:+89121783 | Msa0435770:three_prime_UTR |
| TTTGGTCTTCTTCACTTGTT+AGG | 0.185790 | 3_2:+89117043 | Msa0435770:five_prime_UTR |
| CTTCTATGGTTTGTTTCTTT+CGG | 0.208016 | 3_2:+89121782 | Msa0435770:three_prime_UTR |
| TGACTTGTTATTGAATATTA+TGG | 0.258695 | 3_2:-89122002 | None:intergenic |
| ATTCATGATGATGACTTCTA+TGG | 0.274474 | 3_2:+89121768 | Msa0435770:three_prime_UTR |
| TGGAGATCTGGCTGAAATTC+GGG | 0.287672 | 3_2:+89118758 | Msa0435770:CDS |
| GGCTGTCCGCATTGGAGATT+TGG | 0.288995 | 3_2:+89121074 | Msa0435770:intron |
| TTGGAGATTTGGAGCTGTTT+AGG | 0.292663 | 3_2:+89121085 | Msa0435770:CDS |
| CTCGATCATGTTCTCACTCC+TGG | 0.302582 | 3_2:+89117414 | Msa0435770:CDS |
| GAAAGTTGTAAACTCTCTTT+AGG | 0.303098 | 3_2:+89121931 | Msa0435770:three_prime_UTR |
| TGAACGAAATTGAGCGAAAT+CGG | 0.305957 | 3_2:-89117098 | None:intergenic |
| TCATATAGCCATGAACTTAC+TGG | 0.313557 | 3_2:+89118738 | Msa0435770:CDS |
| GAGCTTTACGAGCAGCTTGC+AGG | 0.339070 | 3_2:-89119429 | None:intergenic |
| CTGGAGATCTGGCTGAAATT+CGG | 0.352735 | 3_2:+89118757 | Msa0435770:CDS |
| CCAGATCTCCAGTAAGTTCA+TGG | 0.361028 | 3_2:-89118746 | None:intergenic |
| CGAAAACCCCGAGCTGCAAC+TGG | 0.373967 | 3_2:-89119451 | None:intergenic |
| CTAATGGAAGTTCTTCATAA+TGG | 0.374767 | 3_2:-89121657 | None:intergenic |
| GAAAATTCGGACTATTCAAT+TGG | 0.381260 | 3_2:+89119381 | Msa0435770:CDS |
| TCAGCATCAGCAACAGGATT+TGG | 0.384636 | 3_2:-89121270 | None:intergenic |
| CCAAGCAATGCTGATTCAAC+AGG | 0.387819 | 3_2:-89121909 | None:intergenic |
| TCTTCTACCTCGGGAAAATT+CGG | 0.396222 | 3_2:+89119368 | Msa0435770:CDS |
| TGACCACGTTGCTTCTTGTT+TGG | 0.396407 | 3_2:+89117025 | Msa0435770:five_prime_UTR |
| TAAAGCTCCAGTTGCAGCTC+GGG | 0.397705 | 3_2:+89119444 | Msa0435770:CDS |
| TCTTATAGTCCTTTACCATA+TGG | 0.400326 | 3_2:+89121727 | Msa0435770:three_prime_UTR |
| TTCTTACGCTGCAAAGTAGA+TGG | 0.406026 | 3_2:-89117186 | None:intergenic |
| ATCATAGTGCGTTTACTGTT+GGG | 0.406603 | 3_2:+89119496 | Msa0435770:CDS |
| TTGGTCTTCTTCACTTGTTA+GGG | 0.416132 | 3_2:+89117044 | Msa0435770:five_prime_UTR |
| TTCACCCTACTAGTTGCAAT+CGG | 0.422424 | 3_2:+89121602 | Msa0435770:three_prime_UTR |
| ATCCTCCTCTGCAATATGTT+TGG | 0.422847 | 3_2:-89121550 | None:intergenic |
| GTTCTTCAGCTAGTGTTGCT+TGG | 0.427729 | 3_2:+89118655 | Msa0435770:CDS |
| ACTTCTCTGCCTGGTCATAT+AGG | 0.427888 | 3_2:-89119070 | None:intergenic |
| CACCCTTCGCCATGATGAGT+TGG | 0.431601 | 3_2:+89118921 | Msa0435770:CDS |
| ATTGTGATTCATAGATTTGA+AGG | 0.432257 | 3_2:+89117272 | Msa0435770:intron |
| TGTCGTTATCTCTTCTACCT+CGG | 0.432513 | 3_2:+89119358 | Msa0435770:CDS |
| GTCGTTATCTCTTCTACCTC+GGG | 0.434794 | 3_2:+89119359 | Msa0435770:CDS |
| CCATGAACTTACTGGAGATC+TGG | 0.437963 | 3_2:+89118746 | Msa0435770:CDS |
| TAACAGTAAATTTCTAGCTC+AGG | 0.444215 | 3_2:-89118488 | None:intergenic |
| AAATGGGTGGATGGTGTCTA+AGG | 0.451020 | 3_2:+89121350 | Msa0435770:CDS |
| TTGACCTCAACTTCTCTGCC+TGG | 0.452207 | 3_2:-89119079 | None:intergenic |
| TCGCCATGATGAGTTGGGTC+AGG | 0.456432 | 3_2:+89118927 | Msa0435770:CDS |
| ATGCTCTCAGCATCAGCAAC+AGG | 0.456927 | 3_2:-89121276 | None:intergenic |
| TATCATAGTGCGTTTACTGT+TGG | 0.459477 | 3_2:+89119495 | Msa0435770:CDS |
| TGGATGGTGTCTAAGGAAAC+AGG | 0.461685 | 3_2:+89121357 | Msa0435770:CDS |
| ACTAGCTGAAGAACAAGCTT+TGG | 0.471713 | 3_2:-89118646 | None:intergenic |
| GAACGAAATTGAGCGAAATC+GGG | 0.475073 | 3_2:-89117097 | None:intergenic |
| AGTGTTTAGCTGTAGGGGTA+GGG | 0.475084 | 3_2:-89118460 | None:intergenic |
| AGATCCCGATTGCAACTAGT+AGG | 0.484380 | 3_2:-89121607 | None:intergenic |
| GTGTTTAGCTGTAGGGGTAG+GGG | 0.484533 | 3_2:-89118459 | None:intergenic |
| CTCCACACATGAGCCTCAGC+TGG | 0.484832 | 3_2:+89121389 | Msa0435770:CDS |
| TGCGAAGCAGCAAATTAAGA+AGG | 0.487151 | 3_2:-89119031 | None:intergenic |
| ACCCTTCGCCATGATGAGTT+GGG | 0.488916 | 3_2:+89118922 | Msa0435770:CDS |
| GCAACAAGTGTTTAGCTGTA+GGG | 0.489547 | 3_2:-89118466 | None:intergenic |
| AACTTCCTTCGAGTAAGAAC+CGG | 0.493423 | 3_2:-89117316 | None:intergenic |
| GCTACATTGGATCATGCAAA+TGG | 0.497010 | 3_2:+89121333 | Msa0435770:CDS |
| CTGTCGATGTTATTGCATCT+AGG | 0.500017 | 3_2:+89118700 | Msa0435770:CDS |
| AGATGGAACTTGTGGAGAAA+CGG | 0.500179 | 3_2:-89117169 | None:intergenic |
| TCACCCTACTAGTTGCAATC+GGG | 0.501446 | 3_2:+89121603 | Msa0435770:three_prime_UTR |
| GTCTCCGACATAATGTCATC+AGG | 0.501605 | 3_2:+89121169 | Msa0435770:CDS |
| ACAACAGCAAGAGCAGGAAC+TGG | 0.505747 | 3_2:+89121527 | Msa0435770:CDS |
| GAATTCCAGGCTGTCCGCAT+TGG | 0.508181 | 3_2:+89121066 | Msa0435770:intron |
| CCTGTTGAATCAGCATTGCT+TGG | 0.512911 | 3_2:+89121909 | Msa0435770:three_prime_UTR |
| TGTCAAAGGCTATTCGTGAT+GGG | 0.517542 | 3_2:+89121301 | Msa0435770:CDS |
| ACATTTGTAAGCTCAAAGTA+AGG | 0.517576 | 3_2:-89119574 | None:intergenic |
| ATGAGTTCCGTCTGCACTGA+AGG | 0.520485 | 3_2:-89121133 | None:intergenic |
| GTAAAGCTCCAGTTGCAGCT+CGG | 0.520793 | 3_2:+89119443 | Msa0435770:CDS |
| CTGAGATTTCCATATGGTAA+AGG | 0.523883 | 3_2:-89121736 | None:intergenic |
| GTAAGAACCGGTCTCAATAA+CGG | 0.524017 | 3_2:-89117304 | None:intergenic |
| AGAGAGACAACAGCAAGAGC+AGG | 0.524456 | 3_2:+89121521 | Msa0435770:CDS |
| GAAACCTACTTGCATTGCAT+CGG | 0.524818 | 3_2:+89118893 | Msa0435770:intron |
| GGAGGATGATCATGAGATGG+AGG | 0.525489 | 3_2:+89118409 | Msa0435770:intron |
| AAGTGTTTAGCTGTAGGGGT+AGG | 0.526202 | 3_2:-89118461 | None:intergenic |
| AGCTAGTGAGATGCGAGAAT+AGG | 0.527722 | 3_2:-89121217 | None:intergenic |
| TGAAGCACATTCAAACCAGC+AGG | 0.534748 | 3_2:+89119115 | Msa0435770:CDS |
| CGAACTGTCTTTATGCAGAA+AGG | 0.537836 | 3_2:+89119532 | Msa0435770:CDS |
| GTGTCAAAGGCTATTCGTGA+TGG | 0.538072 | 3_2:+89121300 | Msa0435770:CDS |
| TGCTGAGAGCATTGTGTCAA+AGG | 0.543350 | 3_2:+89121287 | Msa0435770:CDS |
| ATATGGTAAAGGACTATAAG+AGG | 0.543838 | 3_2:-89121725 | None:intergenic |
| TGTAGGGGTAGGGGTTTGAA+TGG | 0.543905 | 3_2:-89118450 | None:intergenic |
| TTCGAATTCAATGTAACAAG+TGG | 0.544110 | 3_2:+89119470 | Msa0435770:CDS |
| TGCATAAAGACAGTTCGCTC+AGG | 0.545859 | 3_2:-89119526 | None:intergenic |
| CGACATAATGTCATCAGGAC+TGG | 0.551358 | 3_2:+89121174 | Msa0435770:CDS |
| AACAGGCTGAGATTTCCATA+TGG | 0.551382 | 3_2:-89121742 | None:intergenic |
| GGCAGAGAAGTTGAGGTCAA+AGG | 0.552276 | 3_2:+89119082 | Msa0435770:CDS |
| GACAGAATGTGTCGCCCAGA+TGG | 0.554889 | 3_2:+89121968 | Msa0435770:three_prime_UTR |
| GGCAACAAGTGTTTAGCTGT+AGG | 0.555242 | 3_2:-89118467 | None:intergenic |
| TGTCTTTATGCAGAAAGGAA+TGG | 0.555289 | 3_2:+89119537 | Msa0435770:CDS |
| AAACCTGACCCAACTCATCA+TGG | 0.555876 | 3_2:-89118930 | None:intergenic |
| TTAGCATGAGGTTCAGAACC+AGG | 0.559671 | 3_2:-89117432 | None:intergenic |
| GACCCAACTCATCATGGCGA+AGG | 0.562132 | 3_2:-89118924 | None:intergenic |
| GCGAAGCAGCAAATTAAGAA+GGG | 0.562737 | 3_2:-89119030 | None:intergenic |
| GGATGATCATGAGATGGAGG+TGG | 0.570304 | 3_2:+89118412 | Msa0435770:CDS |
| TCGAATTCAATGTAACAAGT+GGG | 0.570948 | 3_2:+89119471 | Msa0435770:CDS |
| ATGACCAGGCAGAGAAGTTG+AGG | 0.578368 | 3_2:+89119075 | Msa0435770:CDS |
| ATAGGAGGATGATCATGAGA+TGG | 0.579908 | 3_2:+89118406 | Msa0435770:intron |
| CAACAAGTGTTTAGCTGTAG+GGG | 0.588492 | 3_2:-89118465 | None:intergenic |
| ATAGCGTCCGTTATTGAGAC+CGG | 0.589430 | 3_2:+89117297 | Msa0435770:CDS |
| GGCCAAACATATTGCAGAGG+AGG | 0.589837 | 3_2:+89121548 | Msa0435770:CDS |
| GGTTTGAATGGAAGATGTTG+CGG | 0.590755 | 3_2:-89118438 | None:intergenic |
| GCAACCACCTTCAGTGCAGA+CGG | 0.594746 | 3_2:+89121126 | Msa0435770:CDS |
| GATCCCGATTGCAACTAGTA+GGG | 0.595058 | 3_2:-89121606 | None:intergenic |
| TGGGGCAATTGATGCTACAT+TGG | 0.595169 | 3_2:+89121320 | Msa0435770:CDS |
| GAACATAGTAATTACTAGCA+AGG | 0.595996 | 3_2:-89121850 | None:intergenic |
| CTACATTGGATCATGCAAAT+GGG | 0.597867 | 3_2:+89121334 | Msa0435770:CDS |
| ATGGAAATATAAGCAAATGT+CGG | 0.598463 | 3_2:-89121638 | None:intergenic |
| CAATCCGATGCAATGCAAGT+AGG | 0.600803 | 3_2:-89118897 | None:intergenic |
| AAAGCTCCAGTTGCAGCTCG+GGG | 0.611705 | 3_2:+89119445 | Msa0435770:CDS |
| TACGCAGACAATTTAGCATG+AGG | 0.613498 | 3_2:-89117444 | None:intergenic |
| ACCCAACTCATCATGGCGAA+GGG | 0.614807 | 3_2:-89118923 | None:intergenic |
| GGTCATTCAGAGTAACACCT+TGG | 0.617949 | 3_2:-89121888 | None:intergenic |
| GGATCATGCAAATGGGTGGA+TGG | 0.621270 | 3_2:+89121341 | Msa0435770:CDS |
| TTTGAATGTGCTTCAAATCG+TGG | 0.621618 | 3_2:-89119107 | None:intergenic |
| TGAGACCGGTTCTTACTCGA+AGG | 0.622392 | 3_2:+89117311 | Msa0435770:CDS |
| CAACTCATCATGGCGAAGGG+TGG | 0.622685 | 3_2:-89118920 | None:intergenic |
| ATTGTCTGCGTATCTTCCCA+AGG | 0.623168 | 3_2:+89117455 | Msa0435770:CDS |
| GGAGATCTGGCTGAAATTCG+GGG | 0.623695 | 3_2:+89118759 | Msa0435770:CDS |
| TGCAAAGTAGATGGAACTTG+TGG | 0.628606 | 3_2:-89117177 | None:intergenic |
| CGAGAATTGAAAGCCAGCTG+AGG | 0.642823 | 3_2:-89121402 | None:intergenic |
| GTCAAAGGCTATTCGTGATG+GGG | 0.645352 | 3_2:+89121302 | Msa0435770:CDS |
| CAGTCCTGATGACATTATGT+CGG | 0.646136 | 3_2:-89121173 | None:intergenic |
| TCACTACAACCTATATGACC+AGG | 0.647246 | 3_2:+89119061 | Msa0435770:CDS |
| TGTGGAGAAACGGAATTCGA+AGG | 0.647707 | 3_2:-89117159 | None:intergenic |
| TTCGTCTTACAATTGCATTG+AGG | 0.658485 | 3_2:+89117358 | Msa0435770:CDS |
| GAGATCTGGCTGAAATTCGG+GGG | 0.660656 | 3_2:+89118760 | Msa0435770:CDS |
| CATTGGATCATGCAAATGGG+TGG | 0.661664 | 3_2:+89121337 | Msa0435770:CDS |
| AGCCAGCTGAGGCTCATGTG+TGG | 0.668454 | 3_2:-89121391 | None:intergenic |
| AGTTCCGTCTGCACTGAAGG+TGG | 0.692083 | 3_2:-89121130 | None:intergenic |
| ACTGGCCAAACATATTGCAG+AGG | 0.692977 | 3_2:+89121545 | Msa0435770:CDS |
| AGACCAAACAAGAAGCAACG+TGG | 0.750508 | 3_2:-89117028 | None:intergenic |
| ACAGCTCCAAATCTCCAATG+CGG | 0.755080 | 3_2:-89121080 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTAATAAAGAAAAAT+TGG | - | chr3_2:89120063-89120082 | None:intergenic | 10.0% |
| !! | TTAATAATTATAGATTCAAT+TGG | - | chr3_2:89120802-89120821 | None:intergenic | 10.0% |
| !!! | TTTTTTTTGTTGGTTATTTA+GGG | + | chr3_2:89117608-89117627 | Msa0435770:intron | 15.0% |
| !! | GTAATTTAGATTAAGAATTA+AGG | - | chr3_2:89118174-89118193 | None:intergenic | 15.0% |
| !! | AATTCTTAATCTAAATTACT+AGG | + | chr3_2:89118175-89118194 | Msa0435770:intron | 15.0% |
| !!! | TGTCTGATTTTTTATATTTT+AGG | + | chr3_2:89118623-89118642 | Msa0435770:intron | 15.0% |
| !! | TCTATATAATCAATAAATCA+AGG | + | chr3_2:89118802-89118821 | Msa0435770:intron | 15.0% |
| !!! | GATTTTTTTTTTGTACTTTT+TGG | + | chr3_2:89119245-89119264 | Msa0435770:intron | 15.0% |
| !! | ATATATTATTATGACAAACA+AGG | - | chr3_2:89119620-89119639 | None:intergenic | 15.0% |
| !! | TATTAAAAAAGTCAAAACAA+AGG | + | chr3_2:89120072-89120091 | Msa0435770:intron | 15.0% |
| !! | ATTAAAAAAGTCAAAACAAA+GGG | + | chr3_2:89120073-89120092 | Msa0435770:intron | 15.0% |
| !! | TAATTATTAATGTTATCTCA+AGG | + | chr3_2:89120812-89120831 | Msa0435770:intron | 15.0% |
| !!! | AAATGCATAAAATATTCTTT+TGG | - | chr3_2:89120899-89120918 | None:intergenic | 15.0% |
| !! | TGAAAAAAAGTCAATTAATT+AGG | + | chr3_2:89121826-89121845 | Msa0435770:three_prime_UTR | 15.0% |
| !! | CAAAATTCACAAATTGAAAA+CGG | - | chr3_2:89117250-89117269 | None:intergenic | 20.0% |
| !! | TTAACTTAGATTTAGCATTT+AGG | + | chr3_2:89117496-89117515 | Msa0435770:intron | 20.0% |
| !! | TAACTTAGATTTAGCATTTA+GGG | + | chr3_2:89117497-89117516 | Msa0435770:intron | 20.0% |
| !!! | GATGAATTAGTTTTTTTTGT+TGG | + | chr3_2:89117598-89117617 | Msa0435770:intron | 20.0% |
| !!! | GTTTTTTTTGTTGGTTATTT+AGG | + | chr3_2:89117607-89117626 | Msa0435770:intron | 20.0% |
| !! | TAATCACTTAAATGATAATC+AGG | + | chr3_2:89118109-89118128 | Msa0435770:intron | 20.0% |
| !! | TATCTTCATCAGAAAATATT+AGG | + | chr3_2:89118313-89118332 | Msa0435770:intron | 20.0% |
| !! | ATATAATCAATAAATCAAGG+AGG | + | chr3_2:89118805-89118824 | Msa0435770:intron | 20.0% |
| !!! | AACTTGTTTAAATCTTTTTG+TGG | + | chr3_2:89118856-89118875 | Msa0435770:intron | 20.0% |
| !!! | GAGAAGATTTTTTTATGTTA+GGG | + | chr3_2:89118967-89118986 | Msa0435770:intron | 20.0% |
| !! | GATAAGTTATAACTAAAAAG+TGG | - | chr3_2:89119758-89119777 | None:intergenic | 20.0% |
| !! | TTAAAAAAGTCAAAACAAAG+GGG | + | chr3_2:89120074-89120093 | Msa0435770:intron | 20.0% |
| !!! | GAGTACTTTTTGTATATAAA+TGG | + | chr3_2:89120271-89120290 | Msa0435770:intron | 20.0% |
| !!! | TTTTTGAATGTTCTAAATAC+AGG | + | chr3_2:89120444-89120463 | Msa0435770:intron | 20.0% |
| !! | TAAACTCTTAATCTCTTTAA+TGG | - | chr3_2:89120488-89120507 | None:intergenic | 20.0% |
| !! | TGAGAGATAGAAAATAAATA+AGG | + | chr3_2:89120598-89120617 | Msa0435770:intron | 20.0% |
| !! | GCAACAATTAACTATATTTA+GGG | - | chr3_2:89120646-89120665 | None:intergenic | 20.0% |
| !!! | AGAATATTTTATGCATTTGT+TGG | + | chr3_2:89120901-89120920 | Msa0435770:intron | 20.0% |
| !!! | GAAATTTTCAACTTTTGAAA+GGG | - | chr3_2:89121688-89121707 | None:intergenic | 20.0% |
| !!! | TGAAATTTTCAACTTTTGAA+AGG | - | chr3_2:89121689-89121708 | None:intergenic | 20.0% |
| !!! | TGAAAATTTCATTTTCTACA+TGG | + | chr3_2:89121698-89121717 | Msa0435770:three_prime_UTR | 20.0% |
| !! | CGTTTTCAATTTGTGAATTT+TGG | + | chr3_2:89117248-89117267 | Msa0435770:intron | 25.0% |
| ! | ATTGTGATTCATAGATTTGA+AGG | + | chr3_2:89117272-89117291 | Msa0435770:intron | 25.0% |
| !! | GACTATTTTCATACAGTTTA+TGG | - | chr3_2:89117702-89117721 | None:intergenic | 25.0% |
| ! | GTAGTTTCGATTAAGAATTA+GGG | - | chr3_2:89117787-89117806 | None:intergenic | 25.0% |
| !! | TGTTTTCTATGATTGCATTT+AGG | + | chr3_2:89117886-89117905 | Msa0435770:intron | 25.0% |
| !! | GTTTTCTATGATTGCATTTA+GGG | + | chr3_2:89117887-89117906 | Msa0435770:intron | 25.0% |
| !! | ATTTTCATAACCTATCATAG+AGG | - | chr3_2:89118045-89118064 | None:intergenic | 25.0% |
| ! | GATTAAGAATTAAGGATGTT+TGG | - | chr3_2:89118166-89118185 | None:intergenic | 25.0% |
| !! | TTTTCTGATGAAGATAGAAA+GGG | - | chr3_2:89118309-89118328 | None:intergenic | 25.0% |
| !! | ATTTTCTGATGAAGATAGAA+AGG | - | chr3_2:89118310-89118329 | None:intergenic | 25.0% |
| !!! | AATTTTGTCACTGATTGTAT+AGG | + | chr3_2:89118388-89118407 | Msa0435770:intron | 25.0% |
| ! | TGAAAACATATAAGCAATAC+AGG | - | chr3_2:89118567-89118586 | None:intergenic | 25.0% |
| !!! | GGAGAAGATTTTTTTATGTT+AGG | + | chr3_2:89118966-89118985 | Msa0435770:intron | 25.0% |
| ! | AAGGAGTAAGAATTAACAAA+AGG | - | chr3_2:89119298-89119317 | None:intergenic | 25.0% |
| ! | AATACTCCATAAAAACTAGT+CGG | - | chr3_2:89119705-89119724 | None:intergenic | 25.0% |
| ! | ACTACTACTAAAAAAAGAAG+TGG | + | chr3_2:89119787-89119806 | Msa0435770:intron | 25.0% |
| ! | CTACTACTAAAAAAAGAAGT+GGG | + | chr3_2:89119788-89119807 | Msa0435770:intron | 25.0% |
| ! | AAACACTCCTAAAAAATAAG+CGG | - | chr3_2:89119854-89119873 | None:intergenic | 25.0% |
| ! | AGCAAGTTAAAACTAAAAAG+TGG | - | chr3_2:89119925-89119944 | None:intergenic | 25.0% |
| ! | AATAGTCCTAAACAATAAGT+GGG | + | chr3_2:89119947-89119966 | Msa0435770:intron | 25.0% |
| ! | CTAACACACATCTAATTTAT+AGG | - | chr3_2:89120012-89120031 | None:intergenic | 25.0% |
| !!! | TACAAAAAGTACTCATCATT+TGG | - | chr3_2:89120265-89120284 | None:intergenic | 25.0% |
| ! | ATAAGCATTTCATTACATCT+CGG | - | chr3_2:89120352-89120371 | None:intergenic | 25.0% |
| ! | CGCAACAATTAACTATATTT+AGG | - | chr3_2:89120647-89120666 | None:intergenic | 25.0% |
| ! | GAAGAAAGAAAATGGTTTAT+TGG | + | chr3_2:89120666-89120685 | Msa0435770:intron | 25.0% |
| !! | ATAAAATATTCTTTTGGCAC+AGG | - | chr3_2:89120893-89120912 | None:intergenic | 25.0% |
| !! | TCATTTGTTAATTCTCCATT+TGG | + | chr3_2:89120986-89121005 | Msa0435770:intron | 25.0% |
| ! | TATAGCAAATAACACAAGTA+TGG | - | chr3_2:89121016-89121035 | None:intergenic | 25.0% |
| ! | ATGGAAATATAAGCAAATGT+CGG | - | chr3_2:89121641-89121660 | None:intergenic | 25.0% |
| ! | TCATCATCATGAATAAAAAC+AGG | - | chr3_2:89121762-89121781 | None:intergenic | 25.0% |
| !! | TCGAAGTTTTTATTATTCCA+AGG | + | chr3_2:89121871-89121890 | Msa0435770:three_prime_UTR | 25.0% |
| TTAACACAAGTTTGTACCTT+GGG | - | chr3_2:89117474-89117493 | None:intergenic | 30.0% | |
| ATTAACACAAGTTTGTACCT+TGG | - | chr3_2:89117475-89117494 | None:intergenic | 30.0% | |
| TTAAATCTACCATTGCATTC+AGG | + | chr3_2:89117575-89117594 | Msa0435770:intron | 30.0% | |
| TAAATCTACCATTGCATTCA+GGG | + | chr3_2:89117576-89117595 | Msa0435770:intron | 30.0% | |
| CGTAGTTTCGATTAAGAATT+AGG | - | chr3_2:89117788-89117807 | None:intergenic | 30.0% | |
| AATTCTTAATCGAAACTACG+AGG | + | chr3_2:89117788-89117807 | Msa0435770:intron | 30.0% | |
| ATTCTTAATCGAAACTACGA+GGG | + | chr3_2:89117789-89117808 | Msa0435770:intron | 30.0% | |
| ! | GACTTTTTGACAGATCTTTT+AGG | + | chr3_2:89117995-89118014 | Msa0435770:intron | 30.0% |
| !!! | TTCTCTTCCTTTGTTTTTGA+CGG | + | chr3_2:89118339-89118358 | Msa0435770:intron | 30.0% |
| !! | TAACAGTAAATTTCTAGCTC+AGG | - | chr3_2:89118491-89118510 | None:intergenic | 30.0% |
| TGATCAGAAAAAATACAACG+AGG | + | chr3_2:89118535-89118554 | Msa0435770:CDS | 30.0% | |
| ! | ATGTTTTCAACTATGCAAAC+TGG | + | chr3_2:89118578-89118597 | Msa0435770:intron | 30.0% |
| ATCAATAAGCTTCATCACAA+GGG | - | chr3_2:89119228-89119247 | None:intergenic | 30.0% | |
| AATCAATAAGCTTCATCACA+AGG | - | chr3_2:89119229-89119248 | None:intergenic | 30.0% | |
| GAAAATTCGGACTATTCAAT+TGG | + | chr3_2:89119381-89119400 | Msa0435770:CDS | 30.0% | |
| TTCGAATTCAATGTAACAAG+TGG | + | chr3_2:89119470-89119489 | Msa0435770:CDS | 30.0% | |
| TCGAATTCAATGTAACAAGT+GGG | + | chr3_2:89119471-89119490 | Msa0435770:CDS | 30.0% | |
| ACATTTGTAAGCTCAAAGTA+AGG | - | chr3_2:89119577-89119596 | None:intergenic | 30.0% | |
| ACAAATGTAAGTCCACATTA+TGG | + | chr3_2:89119589-89119608 | Msa0435770:intron | 30.0% | |
| !!! | TTTACACCCGCTTATTTTTT+AGG | + | chr3_2:89119844-89119863 | Msa0435770:intron | 30.0% |
| AACACTCCTAAAAAATAAGC+GGG | - | chr3_2:89119853-89119872 | None:intergenic | 30.0% | |
| TTAGAAACTGTTAACTGAAG+TGG | + | chr3_2:89119873-89119892 | Msa0435770:intron | 30.0% | |
| ! | CACTTATTGTTTAGGACTAT+TGG | - | chr3_2:89119948-89119967 | None:intergenic | 30.0% |
| CAATAGTCCTAAACAATAAG+TGG | + | chr3_2:89119946-89119965 | Msa0435770:intron | 30.0% | |
| CACACATCTAATTTATAGGT+GGG | - | chr3_2:89120008-89120027 | None:intergenic | 30.0% | |
| ACACACATCTAATTTATAGG+TGG | - | chr3_2:89120009-89120028 | None:intergenic | 30.0% | |
| AAAGAAAGATGACAATGTGA+AGG | - | chr3_2:89120183-89120202 | None:intergenic | 30.0% | |
| ! | TTTTCTTCAACAATTGAGCT+AGG | - | chr3_2:89120212-89120231 | None:intergenic | 30.0% |
| ! | TTCACTATTTTCTGAGCATT+TGG | - | chr3_2:89120242-89120261 | None:intergenic | 30.0% |
| ATTGTTGCGAAGAAAGAAAA+TGG | + | chr3_2:89120658-89120677 | Msa0435770:intron | 30.0% | |
| ! | CACCTTTTAATGTTATCTCA+AGG | + | chr3_2:89120719-89120738 | Msa0435770:intron | 30.0% |
| ATTCCTTCTCAGATAAACTA+TGG | - | chr3_2:89120745-89120764 | None:intergenic | 30.0% | |
| !!! | GGTTCTATTTTTTCAGTCTT+TGG | + | chr3_2:89120922-89120941 | Msa0435770:intron | 30.0% |
| ! | TGTTAGTTTAGCTTATGTTG+TGG | + | chr3_2:89121044-89121063 | Msa0435770:intron | 30.0% |
| CTAATGGAAGTTCTTCATAA+TGG | - | chr3_2:89121660-89121679 | None:intergenic | 30.0% | |
| !! | TTTTGAAAGGGAAATGCTAA+TGG | - | chr3_2:89121676-89121695 | None:intergenic | 30.0% |
| ATATGGTAAAGGACTATAAG+AGG | - | chr3_2:89121728-89121747 | None:intergenic | 30.0% | |
| TCTTATAGTCCTTTACCATA+TGG | + | chr3_2:89121727-89121746 | Msa0435770:three_prime_UTR | 30.0% | |
| ! | ATTCATGATGATGACTTCTA+TGG | + | chr3_2:89121768-89121787 | Msa0435770:three_prime_UTR | 30.0% |
| !! | CTTCTATGGTTTGTTTCTTT+CGG | + | chr3_2:89121782-89121801 | Msa0435770:three_prime_UTR | 30.0% |
| !! | TTCTATGGTTTGTTTCTTTC+GGG | + | chr3_2:89121783-89121802 | Msa0435770:three_prime_UTR | 30.0% |
| ! | TTTCGGGATAATTGTGATTT+TGG | + | chr3_2:89121799-89121818 | Msa0435770:three_prime_UTR | 30.0% |
| GAACATAGTAATTACTAGCA+AGG | - | chr3_2:89121853-89121872 | None:intergenic | 30.0% | |
| GAAAGTTGTAAACTCTCTTT+AGG | + | chr3_2:89121931-89121950 | Msa0435770:three_prime_UTR | 30.0% | |
| ! | TGGTGTAATTTTATCCATCT+GGG | - | chr3_2:89121985-89122004 | None:intergenic | 30.0% |
| ! | ATGGTGTAATTTTATCCATC+TGG | - | chr3_2:89121986-89122005 | None:intergenic | 30.0% |
| ! | TTTGGTCTTCTTCACTTGTT+AGG | + | chr3_2:89117043-89117062 | Msa0435770:five_prime_UTR | 35.0% |
| ! | TTGGTCTTCTTCACTTGTTA+GGG | + | chr3_2:89117044-89117063 | Msa0435770:five_prime_UTR | 35.0% |
| TGAACGAAATTGAGCGAAAT+CGG | - | chr3_2:89117101-89117120 | None:intergenic | 35.0% | |
| TGAGATGTGAAATCGATAGA+CGG | - | chr3_2:89117215-89117234 | None:intergenic | 35.0% | |
| TTCGTCTTACAATTGCATTG+AGG | + | chr3_2:89117358-89117377 | Msa0435770:CDS | 35.0% | |
| TAATTCATCCCTGAATGCAA+TGG | - | chr3_2:89117587-89117606 | None:intergenic | 35.0% | |
| GTTGGTTATTTAGGGATGTT+TGG | + | chr3_2:89117616-89117635 | Msa0435770:intron | 35.0% | |
| GTTATTTAGGGATGTTTGGA+TGG | + | chr3_2:89117620-89117639 | Msa0435770:intron | 35.0% | |
| ACACTTGTGGAAACAACTTA+AGG | + | chr3_2:89117671-89117690 | Msa0435770:intron | 35.0% | |
| TTCTTAATCGAAACTACGAG+GGG | + | chr3_2:89117790-89117809 | Msa0435770:intron | 35.0% | |
| ! | TACTTGCAACTTTTGCAACA+TGG | + | chr3_2:89117845-89117864 | Msa0435770:intron | 35.0% |
| !! | TCTTTCTTGTTCTGCTGTTT+TGG | + | chr3_2:89117930-89117949 | Msa0435770:intron | 35.0% |
| !!! | CTTTCTTGTTCTGCTGTTTT+GGG | + | chr3_2:89117931-89117950 | Msa0435770:intron | 35.0% |
| AAGTGTTTATGTCAGGAGAT+AGG | - | chr3_2:89117971-89117990 | None:intergenic | 35.0% | |
| TAGAGGACTTATGGAATATG+CGG | - | chr3_2:89118028-89118047 | None:intergenic | 35.0% | |
| TTCCATAAGTCCTCTATGAT+AGG | + | chr3_2:89118032-89118051 | Msa0435770:intron | 35.0% | |
| AACCTATCATAGAGGACTTA+TGG | - | chr3_2:89118037-89118056 | None:intergenic | 35.0% | |
| AAAGTCACAAGCAGTAAATG+GGG | - | chr3_2:89118228-89118247 | None:intergenic | 35.0% | |
| CAAAGTCACAAGCAGTAAAT+GGG | - | chr3_2:89118229-89118248 | None:intergenic | 35.0% | |
| ACAAAGTCACAAGCAGTAAA+TGG | - | chr3_2:89118230-89118249 | None:intergenic | 35.0% | |
| TGAAGATAGAAAGGGAAAGA+GGG | - | chr3_2:89118301-89118320 | None:intergenic | 35.0% | |
| ATGAAGATAGAAAGGGAAAG+AGG | - | chr3_2:89118302-89118321 | None:intergenic | 35.0% | |
| !!! | TCTCTTCCTTTGTTTTTGAC+GGG | + | chr3_2:89118340-89118359 | Msa0435770:intron | 35.0% |
| CTATTTCCCGTCAAAAACAA+AGG | - | chr3_2:89118349-89118368 | None:intergenic | 35.0% | |
| ! | TTTTTGACGGGAAATAGCAA+TGG | + | chr3_2:89118352-89118371 | Msa0435770:intron | 35.0% |
| ! | TTTGTCACTGATTGTATAGG+AGG | + | chr3_2:89118391-89118410 | Msa0435770:intron | 35.0% |
| TCAGAAAAAGTAGTACAAGC+AGG | - | chr3_2:89118514-89118533 | None:intergenic | 35.0% | |
| GGCAAATAATTGAATGCTCA+TGG | + | chr3_2:89118599-89118618 | Msa0435770:intron | 35.0% | |
| TCATATAGCCATGAACTTAC+TGG | + | chr3_2:89118738-89118757 | Msa0435770:CDS | 35.0% | |
| TCAGGTTTGTGTTCTACTTA+TGG | + | chr3_2:89118945-89118964 | Msa0435770:intron | 35.0% | |
| CTTACCTGTTGATGTATTTC+AGG | + | chr3_2:89119004-89119023 | Msa0435770:intron | 35.0% | |
| GTTTCCTGAAATACATCAAC+AGG | - | chr3_2:89119011-89119030 | None:intergenic | 35.0% | |
| TTTGAATGTGCTTCAAATCG+TGG | - | chr3_2:89119110-89119129 | None:intergenic | 35.0% | |
| ! | ACGAATTTCTTTTGTGCTCA+TGG | - | chr3_2:89119157-89119176 | None:intergenic | 35.0% |
| !! | GAGCACTGGAATAAAAAGTA+TGG | - | chr3_2:89119187-89119206 | None:intergenic | 35.0% |
| TATCATAGTGCGTTTACTGT+TGG | + | chr3_2:89119495-89119514 | Msa0435770:CDS | 35.0% | |
| ATCATAGTGCGTTTACTGTT+GGG | + | chr3_2:89119496-89119515 | Msa0435770:CDS | 35.0% | |
| TGTCTTTATGCAGAAAGGAA+TGG | + | chr3_2:89119537-89119556 | Msa0435770:CDS | 35.0% | |
| AACAAGGTTGAACCATAATG+TGG | - | chr3_2:89119604-89119623 | None:intergenic | 35.0% | |
| ATAAAAACTAGTCGGTGTAG+TGG | - | chr3_2:89119697-89119716 | None:intergenic | 35.0% | |
| !!! | ACTACACCGACTAGTTTTTA+TGG | + | chr3_2:89119696-89119715 | Msa0435770:intron | 35.0% |
| !! | ATTTTAGCAACATGCACCTT+AGG | + | chr3_2:89119722-89119741 | Msa0435770:intron | 35.0% |
| ! | TTTTAGCAACATGCACCTTA+GGG | + | chr3_2:89119723-89119742 | Msa0435770:intron | 35.0% |
| TGTATTCTAGCAAATGCCTA+TGG | + | chr3_2:89119811-89119830 | Msa0435770:intron | 35.0% | |
| GTATTCTAGCAAATGCCTAT+GGG | + | chr3_2:89119812-89119831 | Msa0435770:intron | 35.0% | |
| TGTAAATTAGTAGCTCCCAT+AGG | - | chr3_2:89119830-89119849 | None:intergenic | 35.0% | |
| ! | TTTTCTTCATCCATGTGTTG+TGG | - | chr3_2:89120301-89120320 | None:intergenic | 35.0% |
| ! | GAATGTTCTAAATACAGGTG+TGG | + | chr3_2:89120449-89120468 | Msa0435770:intron | 35.0% |
| GGTTTATTGGTCCATGTAAA+AGG | + | chr3_2:89120679-89120698 | Msa0435770:intron | 35.0% | |
| ! | TTGGTCCATGTAAAAGGTAT+TGG | + | chr3_2:89120685-89120704 | Msa0435770:intron | 35.0% |
| !! | TGGTCCATGTAAAAGGTATT+GGG | + | chr3_2:89120686-89120705 | Msa0435770:intron | 35.0% |
| ! | AGTACCCAATACCTTTTACA+TGG | - | chr3_2:89120693-89120712 | None:intergenic | 35.0% |
| GGCCTTGAGATAACATTAAA+AGG | - | chr3_2:89120724-89120743 | None:intergenic | 35.0% | |
| CAACCTTTCTTGCACAATTT+AGG | + | chr3_2:89120850-89120869 | Msa0435770:intron | 35.0% | |
| ! | AAATATTCTTTTGGCACAGG+TGG | - | chr3_2:89120890-89120909 | None:intergenic | 35.0% |
| CACAAGTATGGATATCCAAA+TGG | - | chr3_2:89121004-89121023 | None:intergenic | 35.0% | |
| CTGATGTTGCTAAAAAGTTG+AGG | + | chr3_2:89121238-89121257 | Msa0435770:CDS | 35.0% | |
| TGTTGCTAAAAAGTTGAGGT+TGG | + | chr3_2:89121242-89121261 | Msa0435770:CDS | 35.0% | |
| CTACATTGGATCATGCAAAT+GGG | + | chr3_2:89121334-89121353 | Msa0435770:CDS | 35.0% | |
| CTGAGATTTCCATATGGTAA+AGG | - | chr3_2:89121739-89121758 | None:intergenic | 35.0% | |
| GAACGAAATTGAGCGAAATC+GGG | - | chr3_2:89117100-89117119 | None:intergenic | 40.0% | |
| AGATGGAACTTGTGGAGAAA+CGG | - | chr3_2:89117172-89117191 | None:intergenic | 40.0% | |
| TGCAAAGTAGATGGAACTTG+TGG | - | chr3_2:89117180-89117199 | None:intergenic | 40.0% | |
| TTCTTACGCTGCAAAGTAGA+TGG | - | chr3_2:89117189-89117208 | None:intergenic | 40.0% | |
| GTAAGAACCGGTCTCAATAA+CGG | - | chr3_2:89117307-89117326 | None:intergenic | 40.0% | |
| AACTTCCTTCGAGTAAGAAC+CGG | - | chr3_2:89117319-89117338 | None:intergenic | 40.0% | |
| TACGCAGACAATTTAGCATG+AGG | - | chr3_2:89117447-89117466 | None:intergenic | 40.0% | |
| ACTTATTTGAGCTTGCCTAC+TGG | + | chr3_2:89117643-89117662 | Msa0435770:intron | 40.0% | |
| ATAGGAGGATGATCATGAGA+TGG | + | chr3_2:89118406-89118425 | Msa0435770:intron | 40.0% | |
| GGTTTGAATGGAAGATGTTG+CGG | - | chr3_2:89118441-89118460 | None:intergenic | 40.0% | |
| CAACAAGTGTTTAGCTGTAG+GGG | - | chr3_2:89118468-89118487 | None:intergenic | 40.0% | |
| GCAACAAGTGTTTAGCTGTA+GGG | - | chr3_2:89118469-89118488 | None:intergenic | 40.0% | |
| ACTAGCTGAAGAACAAGCTT+TGG | - | chr3_2:89118649-89118668 | None:intergenic | 40.0% | |
| CTGTCGATGTTATTGCATCT+AGG | + | chr3_2:89118700-89118719 | Msa0435770:CDS | 40.0% | |
| GAAACCTACTTGCATTGCAT+CGG | + | chr3_2:89118893-89118912 | Msa0435770:intron | 40.0% | |
| GCGAAGCAGCAAATTAAGAA+GGG | - | chr3_2:89119033-89119052 | None:intergenic | 40.0% | |
| TGCGAAGCAGCAAATTAAGA+AGG | - | chr3_2:89119034-89119053 | None:intergenic | 40.0% | |
| TCACTACAACCTATATGACC+AGG | + | chr3_2:89119061-89119080 | Msa0435770:CDS | 40.0% | |
| GATAGAACTAACATACCTGC+TGG | - | chr3_2:89119133-89119152 | None:intergenic | 40.0% | |
| AGAACAAGTGTGCACATGAA+AGG | - | chr3_2:89119317-89119336 | None:intergenic | 40.0% | |
| GAGATAACGACAGAACTGAA+AGG | - | chr3_2:89119350-89119369 | None:intergenic | 40.0% | |
| TGTCGTTATCTCTTCTACCT+CGG | + | chr3_2:89119358-89119377 | Msa0435770:CDS | 40.0% | |
| TCTTCTACCTCGGGAAAATT+CGG | + | chr3_2:89119368-89119387 | Msa0435770:CDS | 40.0% | |
| CGAACTGTCTTTATGCAGAA+AGG | + | chr3_2:89119532-89119551 | Msa0435770:CDS | 40.0% | |
| AAGTGGTTAAATGCACCCTA+AGG | - | chr3_2:89119741-89119760 | None:intergenic | 40.0% | |
| AAGTGGTTAAATGCACCTCA+AGG | + | chr3_2:89119890-89119909 | Msa0435770:intron | 40.0% | |
| CGTACACCCACTTATTGTTT+AGG | - | chr3_2:89119956-89119975 | None:intergenic | 40.0% | |
| TCTTGTCCAACTAACGTGTT+GGG | - | chr3_2:89120037-89120056 | None:intergenic | 40.0% | |
| ATCTTGTCCAACTAACGTGT+TGG | - | chr3_2:89120038-89120057 | None:intergenic | 40.0% | |
| TTGGAGGAAGATGAAACAAC+GGG | - | chr3_2:89120153-89120172 | None:intergenic | 40.0% | |
| GTTGGAGGAAGATGAAACAA+CGG | - | chr3_2:89120154-89120173 | None:intergenic | 40.0% | |
| GAAAGATGACAATGTGAAGG+AGG | - | chr3_2:89120180-89120199 | None:intergenic | 40.0% | |
| CTTCAACAATTGAGCTAGGA+AGG | - | chr3_2:89120208-89120227 | None:intergenic | 40.0% | |
| !!! | GGAAAAAGGCGCTTTTTTCT+GGG | - | chr3_2:89120539-89120558 | None:intergenic | 40.0% |
| GGAAAAAACGGAAGGGAAAA+AGG | - | chr3_2:89120553-89120572 | None:intergenic | 40.0% | |
| CGATTTCCCAGTGGAAAAAA+CGG | - | chr3_2:89120565-89120584 | None:intergenic | 40.0% | |
| CTAGTTTAACGATTTCCCAG+TGG | - | chr3_2:89120574-89120593 | None:intergenic | 40.0% | |
| AGGCCATAGTTTATCTGAGA+AGG | + | chr3_2:89120739-89120758 | Msa0435770:intron | 40.0% | |
| AGCTTATGTTGTGGAATTCC+AGG | + | chr3_2:89121053-89121072 | Msa0435770:intron | 40.0% | |
| ! | TTGGAGATTTGGAGCTGTTT+AGG | + | chr3_2:89121085-89121104 | Msa0435770:CDS | 40.0% |
| CAGTCCTGATGACATTATGT+CGG | - | chr3_2:89121176-89121195 | None:intergenic | 40.0% | |
| TGTCAAAGGCTATTCGTGAT+GGG | + | chr3_2:89121301-89121320 | Msa0435770:CDS | 40.0% | |
| GCTACATTGGATCATGCAAA+TGG | + | chr3_2:89121333-89121352 | Msa0435770:CDS | 40.0% | |
| ATCCTCCTCTGCAATATGTT+TGG | - | chr3_2:89121553-89121572 | None:intergenic | 40.0% | |
| TTCACCCTACTAGTTGCAAT+CGG | + | chr3_2:89121602-89121621 | Msa0435770:three_prime_UTR | 40.0% | |
| AACAGGCTGAGATTTCCATA+TGG | - | chr3_2:89121745-89121764 | None:intergenic | 40.0% | |
| TGACCACGTTGCTTCTTGTT+TGG | + | chr3_2:89117025-89117044 | Msa0435770:five_prime_UTR | 45.0% | |
| AGACCAAACAAGAAGCAACG+TGG | - | chr3_2:89117031-89117050 | None:intergenic | 45.0% | |
| TGTGGAGAAACGGAATTCGA+AGG | - | chr3_2:89117162-89117181 | None:intergenic | 45.0% | |
| ATAGCGTCCGTTATTGAGAC+CGG | + | chr3_2:89117297-89117316 | Msa0435770:CDS | 45.0% | |
| TTAGCATGAGGTTCAGAACC+AGG | - | chr3_2:89117435-89117454 | None:intergenic | 45.0% | |
| ATTGTCTGCGTATCTTCCCA+AGG | + | chr3_2:89117455-89117474 | Msa0435770:CDS | 45.0% | |
| CCACAAGTGTTTATGCCAGT+AGG | - | chr3_2:89117661-89117680 | None:intergenic | 45.0% | |
| CCTACTGGCATAAACACTTG+TGG | + | chr3_2:89117658-89117677 | Msa0435770:intron | 45.0% | |
| GTCTCGCAAGTGTTTATGTC+AGG | - | chr3_2:89117978-89117997 | None:intergenic | 45.0% | |
| AGTGTTTAGCTGTAGGGGTA+GGG | - | chr3_2:89118463-89118482 | None:intergenic | 45.0% | |
| AAGTGTTTAGCTGTAGGGGT+AGG | - | chr3_2:89118464-89118483 | None:intergenic | 45.0% | |
| GGCAACAAGTGTTTAGCTGT+AGG | - | chr3_2:89118470-89118489 | None:intergenic | 45.0% | |
| ! | GTTCTTCAGCTAGTGTTGCT+TGG | + | chr3_2:89118655-89118674 | Msa0435770:CDS | 45.0% |
| CCAGATCTCCAGTAAGTTCA+TGG | - | chr3_2:89118749-89118768 | None:intergenic | 45.0% | |
| CCATGAACTTACTGGAGATC+TGG | + | chr3_2:89118746-89118765 | Msa0435770:CDS | 45.0% | |
| CTGGAGATCTGGCTGAAATT+CGG | + | chr3_2:89118757-89118776 | Msa0435770:CDS | 45.0% | |
| TGGAGATCTGGCTGAAATTC+GGG | + | chr3_2:89118758-89118777 | Msa0435770:CDS | 45.0% | |
| CAATCCGATGCAATGCAAGT+AGG | - | chr3_2:89118900-89118919 | None:intergenic | 45.0% | |
| AAACCTGACCCAACTCATCA+TGG | - | chr3_2:89118933-89118952 | None:intergenic | 45.0% | |
| ACTTCTCTGCCTGGTCATAT+AGG | - | chr3_2:89119073-89119092 | None:intergenic | 45.0% | |
| TGAAGCACATTCAAACCAGC+AGG | + | chr3_2:89119115-89119134 | Msa0435770:CDS | 45.0% | |
| GTCGTTATCTCTTCTACCTC+GGG | + | chr3_2:89119359-89119378 | Msa0435770:CDS | 45.0% | |
| ! | GAATAGTCCGAATTTTCCCG+AGG | - | chr3_2:89119378-89119397 | None:intergenic | 45.0% |
| TGCATAAAGACAGTTCGCTC+AGG | - | chr3_2:89119529-89119548 | None:intergenic | 45.0% | |
| GTGTAGTGGTTAAGGGAGAT+AGG | - | chr3_2:89119683-89119702 | None:intergenic | 45.0% | |
| CTAGTCGGTGTAGTGGTTAA+GGG | - | chr3_2:89119690-89119709 | None:intergenic | 45.0% | |
| ACTAGTCGGTGTAGTGGTTA+AGG | - | chr3_2:89119691-89119710 | None:intergenic | 45.0% | |
| TGGGTGTACGTTAGCAAATC+CGG | + | chr3_2:89119966-89119985 | Msa0435770:intron | 45.0% | |
| TTAGCACCCAACACGTTAGT+TGG | + | chr3_2:89120028-89120047 | Msa0435770:intron | 45.0% | |
| ACAATGTGAAGGAGGATGGT+TGG | - | chr3_2:89120172-89120191 | None:intergenic | 45.0% | |
| GATGACAATGTGAAGGAGGA+TGG | - | chr3_2:89120176-89120195 | None:intergenic | 45.0% | |
| AAATGGCACACCACAACACA+TGG | + | chr3_2:89120288-89120307 | Msa0435770:intron | 45.0% | |
| ATCTCGGTCTATCTACAGAC+TGG | - | chr3_2:89120336-89120355 | None:intergenic | 45.0% | |
| !!! | GGGAAAAAGGCGCTTTTTTC+TGG | - | chr3_2:89120540-89120559 | None:intergenic | 45.0% |
| !!! | TTCCCTTCCGTTTTTTCCAC+TGG | + | chr3_2:89120555-89120574 | Msa0435770:intron | 45.0% |
| !!! | TCCCTTCCGTTTTTTCCACT+GGG | + | chr3_2:89120556-89120575 | Msa0435770:intron | 45.0% |
| TCCCAGTGGAAAAAACGGAA+GGG | - | chr3_2:89120560-89120579 | None:intergenic | 45.0% | |
| TTCCCAGTGGAAAAAACGGA+AGG | - | chr3_2:89120561-89120580 | None:intergenic | 45.0% | |
| AAAGGTTGACCACTAGGCTA+TGG | - | chr3_2:89120838-89120857 | None:intergenic | 45.0% | |
| TGCAAGAAAGGTTGACCACT+AGG | - | chr3_2:89120844-89120863 | None:intergenic | 45.0% | |
| GGGCCTAAATTGTGCAAGAA+AGG | - | chr3_2:89120856-89120875 | None:intergenic | 45.0% | |
| CACAGGTGGTAACTAACTCA+GGG | - | chr3_2:89120876-89120895 | None:intergenic | 45.0% | |
| ACAGCTCCAAATCTCCAATG+CGG | - | chr3_2:89121083-89121102 | None:intergenic | 45.0% | |
| GTCTCCGACATAATGTCATC+AGG | + | chr3_2:89121169-89121188 | Msa0435770:CDS | 45.0% | |
| CGACATAATGTCATCAGGAC+TGG | + | chr3_2:89121174-89121193 | Msa0435770:CDS | 45.0% | |
| AGCTAGTGAGATGCGAGAAT+AGG | - | chr3_2:89121220-89121239 | None:intergenic | 45.0% | |
| TCAGCATCAGCAACAGGATT+TGG | - | chr3_2:89121273-89121292 | None:intergenic | 45.0% | |
| !! | TGCTGAGAGCATTGTGTCAA+AGG | + | chr3_2:89121287-89121306 | Msa0435770:CDS | 45.0% |
| GTGTCAAAGGCTATTCGTGA+TGG | + | chr3_2:89121300-89121319 | Msa0435770:CDS | 45.0% | |
| GTCAAAGGCTATTCGTGATG+GGG | + | chr3_2:89121302-89121321 | Msa0435770:CDS | 45.0% | |
| TGGGGCAATTGATGCTACAT+TGG | + | chr3_2:89121320-89121339 | Msa0435770:CDS | 45.0% | |
| CATTGGATCATGCAAATGGG+TGG | + | chr3_2:89121337-89121356 | Msa0435770:CDS | 45.0% | |
| AAATGGGTGGATGGTGTCTA+AGG | + | chr3_2:89121350-89121369 | Msa0435770:CDS | 45.0% | |
| TGGATGGTGTCTAAGGAAAC+AGG | + | chr3_2:89121357-89121376 | Msa0435770:CDS | 45.0% | |
| ACTGGCCAAACATATTGCAG+AGG | + | chr3_2:89121545-89121564 | Msa0435770:CDS | 45.0% | |
| TCACCCTACTAGTTGCAATC+GGG | + | chr3_2:89121603-89121622 | Msa0435770:three_prime_UTR | 45.0% | |
| GATCCCGATTGCAACTAGTA+GGG | - | chr3_2:89121609-89121628 | None:intergenic | 45.0% | |
| AGATCCCGATTGCAACTAGT+AGG | - | chr3_2:89121610-89121629 | None:intergenic | 45.0% | |
| GGTCATTCAGAGTAACACCT+TGG | - | chr3_2:89121891-89121910 | None:intergenic | 45.0% | |
| !! | CCAAGCAATGCTGATTCAAC+AGG | - | chr3_2:89121912-89121931 | None:intergenic | 45.0% |
| CCTGTTGAATCAGCATTGCT+TGG | + | chr3_2:89121909-89121928 | Msa0435770:three_prime_UTR | 45.0% | |
| !! | AATATATAAGATTTATAAAT+AGG | - | chr3_2:89117529-89117548 | None:intergenic | 5.0% |
| !!! | TTAAATTTTTTATACAAATT+AGG | + | chr3_2:89117761-89117780 | Msa0435770:intron | 5.0% |
| !!! | TTTTTTAATAAAGAAAAATT+GGG | - | chr3_2:89120062-89120081 | None:intergenic | 5.0% |
| ! | TGAGACCGGTTCTTACTCGA+AGG | + | chr3_2:89117311-89117330 | Msa0435770:CDS | 50.0% |
| CTCGATCATGTTCTCACTCC+TGG | + | chr3_2:89117414-89117433 | Msa0435770:CDS | 50.0% | |
| GGAGGATGATCATGAGATGG+AGG | + | chr3_2:89118409-89118428 | Msa0435770:intron | 50.0% | |
| GGATGATCATGAGATGGAGG+TGG | + | chr3_2:89118412-89118431 | Msa0435770:CDS | 50.0% | |
| TGTAGGGGTAGGGGTTTGAA+TGG | - | chr3_2:89118453-89118472 | None:intergenic | 50.0% | |
| GTGTTTAGCTGTAGGGGTAG+GGG | - | chr3_2:89118462-89118481 | None:intergenic | 50.0% | |
| GGAGATCTGGCTGAAATTCG+GGG | + | chr3_2:89118759-89118778 | Msa0435770:CDS | 50.0% | |
| GAGATCTGGCTGAAATTCGG+GGG | + | chr3_2:89118760-89118779 | Msa0435770:CDS | 50.0% | |
| ACCCTTCGCCATGATGAGTT+GGG | + | chr3_2:89118922-89118941 | Msa0435770:CDS | 50.0% | |
| ACCCAACTCATCATGGCGAA+GGG | - | chr3_2:89118926-89118945 | None:intergenic | 50.0% | |
| ATGACCAGGCAGAGAAGTTG+AGG | + | chr3_2:89119075-89119094 | Msa0435770:CDS | 50.0% | |
| TTGACCTCAACTTCTCTGCC+TGG | - | chr3_2:89119082-89119101 | None:intergenic | 50.0% | |
| GGCAGAGAAGTTGAGGTCAA+AGG | + | chr3_2:89119082-89119101 | Msa0435770:CDS | 50.0% | |
| TATTCCAGTGCTCACAGCTG+TGG | + | chr3_2:89119194-89119213 | Msa0435770:intron | 50.0% | |
| GTAAAGCTCCAGTTGCAGCT+CGG | + | chr3_2:89119443-89119462 | Msa0435770:CDS | 50.0% | |
| TAAAGCTCCAGTTGCAGCTC+GGG | + | chr3_2:89119444-89119463 | Msa0435770:CDS | 50.0% | |
| AAGTGGTTGCATACGCCTTG+AGG | - | chr3_2:89119908-89119927 | None:intergenic | 50.0% | |
| GGGTGTACGTTAGCAAATCC+GGG | + | chr3_2:89119967-89119986 | Msa0435770:intron | 50.0% | |
| GGGTGTGCAATAGCATTACC+CGG | - | chr3_2:89119988-89120007 | None:intergenic | 50.0% | |
| ATGTGAAGGAGGATGGTTGG+AGG | - | chr3_2:89120169-89120188 | None:intergenic | 50.0% | |
| ATCTCAAGGCCATAGCCTAG+TGG | + | chr3_2:89120826-89120845 | Msa0435770:intron | 50.0% | |
| GCACAGGTGGTAACTAACTC+AGG | - | chr3_2:89120877-89120896 | None:intergenic | 50.0% | |
| ATGAGTTCCGTCTGCACTGA+AGG | - | chr3_2:89121136-89121155 | None:intergenic | 50.0% | |
| ATGCTCTCAGCATCAGCAAC+AGG | - | chr3_2:89121279-89121298 | None:intergenic | 50.0% | |
| GGATCATGCAAATGGGTGGA+TGG | + | chr3_2:89121341-89121360 | Msa0435770:CDS | 50.0% | |
| CGAGAATTGAAAGCCAGCTG+AGG | - | chr3_2:89121405-89121424 | None:intergenic | 50.0% | |
| AGAGAGACAACAGCAAGAGC+AGG | + | chr3_2:89121521-89121540 | Msa0435770:CDS | 50.0% | |
| ACAACAGCAAGAGCAGGAAC+TGG | + | chr3_2:89121527-89121546 | Msa0435770:CDS | 50.0% | |
| GGCCAAACATATTGCAGAGG+AGG | + | chr3_2:89121548-89121567 | Msa0435770:CDS | 50.0% | |
| CAACTCATCATGGCGAAGGG+TGG | - | chr3_2:89118923-89118942 | None:intergenic | 55.0% | |
| CACCCTTCGCCATGATGAGT+TGG | + | chr3_2:89118921-89118940 | Msa0435770:CDS | 55.0% | |
| GACCCAACTCATCATGGCGA+AGG | - | chr3_2:89118927-89118946 | None:intergenic | 55.0% | |
| ! | TCGCCATGATGAGTTGGGTC+AGG | + | chr3_2:89118927-89118946 | Msa0435770:CDS | 55.0% |
| ATCACCACAGCTGTGAGCAC+TGG | - | chr3_2:89119201-89119220 | None:intergenic | 55.0% | |
| GAGCTTTACGAGCAGCTTGC+AGG | - | chr3_2:89119432-89119451 | None:intergenic | 55.0% | |
| AAAGCTCCAGTTGCAGCTCG+GGG | + | chr3_2:89119445-89119464 | Msa0435770:CDS | 55.0% | |
| GAATTCCAGGCTGTCCGCAT+TGG | + | chr3_2:89121066-89121085 | Msa0435770:intron | 55.0% | |
| AATCTCCAATGCGGACAGCC+TGG | - | chr3_2:89121074-89121093 | None:intergenic | 55.0% | |
| GGCTGTCCGCATTGGAGATT+TGG | + | chr3_2:89121074-89121093 | Msa0435770:intron | 55.0% | |
| GCAACCACCTTCAGTGCAGA+CGG | + | chr3_2:89121126-89121145 | Msa0435770:CDS | 55.0% | |
| AGTTCCGTCTGCACTGAAGG+TGG | - | chr3_2:89121133-89121152 | None:intergenic | 55.0% | |
| GACAGAATGTGTCGCCCAGA+TGG | + | chr3_2:89121968-89121987 | Msa0435770:three_prime_UTR | 55.0% | |
| CGAAAACCCCGAGCTGCAAC+TGG | - | chr3_2:89119454-89119473 | None:intergenic | 60.0% | |
| CTCCACACATGAGCCTCAGC+TGG | + | chr3_2:89121389-89121408 | Msa0435770:CDS | 60.0% | |
| AGCCAGCTGAGGCTCATGTG+TGG | - | chr3_2:89121394-89121413 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 89116992 | 89122018 | 89116992 | ID=Msa0435770;Name=Msa0435770 |
| chr3_2 | mRNA | 89116992 | 89122018 | 89116992 | ID=Msa0435770-mRNA-1;Parent=Msa0435770;Name=Msa0435770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=131|1|1|1|1|1|8|431|490 |
| chr3_2 | exon | 89116992 | 89117201 | 89116992 | ID=Msa0435770-mRNA-1:exon:26333;Parent=Msa0435770-mRNA-1 |
| chr3_2 | exon | 89117286 | 89117476 | 89117286 | ID=Msa0435770-mRNA-1:exon:26334;Parent=Msa0435770-mRNA-1 |
| chr3_2 | exon | 89118410 | 89118556 | 89118410 | ID=Msa0435770-mRNA-1:exon:26335;Parent=Msa0435770-mRNA-1 |
| chr3_2 | exon | 89118645 | 89118781 | 89118645 | ID=Msa0435770-mRNA-1:exon:26336;Parent=Msa0435770-mRNA-1 |
| chr3_2 | exon | 89118894 | 89118948 | 89118894 | ID=Msa0435770-mRNA-1:exon:26337;Parent=Msa0435770-mRNA-1 |
| chr3_2 | exon | 89119026 | 89119136 | 89119026 | ID=Msa0435770-mRNA-1:exon:26338;Parent=Msa0435770-mRNA-1 |
| chr3_2 | exon | 89119355 | 89119594 | 89119355 | ID=Msa0435770-mRNA-1:exon:26339;Parent=Msa0435770-mRNA-1 |
| chr3_2 | exon | 89121075 | 89122018 | 89121075 | ID=Msa0435770-mRNA-1:exon:26340;Parent=Msa0435770-mRNA-1 |
| chr3_2 | five_prime_UTR | 89116992 | 89117122 | 89116992 | ID=Msa0435770-mRNA-1:five_prime_utr;Parent=Msa0435770-mRNA-1 |
| chr3_2 | CDS | 89117123 | 89117201 | 89117123 | ID=Msa0435770-mRNA-1:cds;Parent=Msa0435770-mRNA-1 |
| chr3_2 | CDS | 89117286 | 89117476 | 89117286 | ID=Msa0435770-mRNA-1:cds;Parent=Msa0435770-mRNA-1 |
| chr3_2 | CDS | 89118410 | 89118556 | 89118410 | ID=Msa0435770-mRNA-1:cds;Parent=Msa0435770-mRNA-1 |
| chr3_2 | CDS | 89118645 | 89118781 | 89118645 | ID=Msa0435770-mRNA-1:cds;Parent=Msa0435770-mRNA-1 |
| chr3_2 | CDS | 89118894 | 89118948 | 89118894 | ID=Msa0435770-mRNA-1:cds;Parent=Msa0435770-mRNA-1 |
| chr3_2 | CDS | 89119026 | 89119136 | 89119026 | ID=Msa0435770-mRNA-1:cds;Parent=Msa0435770-mRNA-1 |
| chr3_2 | CDS | 89119355 | 89119594 | 89119355 | ID=Msa0435770-mRNA-1:cds;Parent=Msa0435770-mRNA-1 |
| chr3_2 | CDS | 89121075 | 89121587 | 89121075 | ID=Msa0435770-mRNA-1:cds;Parent=Msa0435770-mRNA-1 |
| chr3_2 | three_prime_UTR | 89121588 | 89122018 | 89121588 | ID=Msa0435770-mRNA-1:three_prime_utr;Parent=Msa0435770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
