Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562660 | XP_039684752.1 | 93.990 | 965 | 35 | 2 | 1 | 948 | 1 | 959 | 0.0 | 1707 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562660 | sp|Q9CAC4|MYOB2_ARATH | 40.708 | 678 | 219 | 27 | 305 | 948 | 221 | 749 | 1.17e-101 | 337 |
| Msa0562660 | sp|Q9CAC4|MYOB2_ARATH | 59.794 | 97 | 38 | 1 | 1 | 96 | 1 | 97 | 2.17e-30 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562660 | A0A396GMJ9 | 93.990 | 965 | 35 | 2 | 1 | 948 | 1 | 959 | 0.0 | 1707 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0562660 | 0.805928 | 1.053287e-49 | -8.615850e-47 |
| Msa0044090 | Msa0562660 | 0.800297 | 1.539538e-48 | -8.615850e-47 |
| Msa0081020 | Msa0562660 | 0.809324 | 2.001791e-50 | -8.615850e-47 |
| Msa0189710 | Msa0562660 | 0.801945 | 7.085791e-49 | -8.615850e-47 |
| Msa0191890 | Msa0562660 | 0.819129 | 1.365946e-52 | -8.615850e-47 |
| Msa0225220 | Msa0562660 | 0.816749 | 4.710550e-52 | -8.615850e-47 |
| Msa0419670 | Msa0562660 | 0.806394 | 8.402476e-50 | -8.615850e-47 |
| Msa0435770 | Msa0562660 | 0.815417 | 9.343477e-52 | -8.615850e-47 |
| Msa0455760 | Msa0562660 | 0.824459 | 7.979789e-54 | -8.615850e-47 |
| Msa0264830 | Msa0562660 | 0.800297 | 1.539538e-48 | -8.615850e-47 |
| Msa0269560 | Msa0562660 | 0.818270 | 2.140176e-52 | -8.615850e-47 |
| Msa0283950 | Msa0562660 | 0.812837 | 3.467696e-51 | -8.615850e-47 |
| Msa0302870 | Msa0562660 | 0.803430 | 3.499176e-49 | -8.615850e-47 |
| Msa0310090 | Msa0562660 | 0.803068 | 4.157855e-49 | -8.615850e-47 |
| Msa0486690 | Msa0562660 | 0.805594 | 1.238238e-49 | -8.615850e-47 |
| Msa0559500 | Msa0562660 | 0.801195 | 1.009471e-48 | -8.615850e-47 |
| Msa0562570 | Msa0562660 | 0.846284 | 2.392534e-59 | -8.615850e-47 |
| Msa0562660 | Msa0571010 | 0.805325 | 1.409945e-49 | -8.615850e-47 |
| Msa0562660 | Msa0579660 | 0.810204 | 1.294987e-50 | -8.615850e-47 |
| Msa0562660 | Msa0681250 | 0.815539 | 8.776339e-52 | -8.615850e-47 |
| Msa0562660 | Msa0690340 | 0.822944 | 1.806161e-53 | -8.615850e-47 |
| Msa0562660 | Msa0713510 | 0.808758 | 2.645701e-50 | -8.615850e-47 |
| Msa0562660 | Msa0729150 | 0.808521 | 2.973849e-50 | -8.615850e-47 |
| Msa0562660 | Msa0733010 | 0.808116 | 3.627681e-50 | -8.615850e-47 |
| Msa0562660 | Msa0787870 | 0.808801 | 2.590428e-50 | -8.615850e-47 |
| Msa0562660 | Msa0859370 | 0.801413 | 9.111788e-49 | -8.615850e-47 |
| Msa0562660 | Msa0927310 | 0.808050 | 3.746085e-50 | -8.615850e-47 |
| Msa0562660 | Msa0936390 | 0.806129 | 9.555936e-50 | -8.615850e-47 |
| Msa0562660 | Msa0999290 | 0.807803 | 4.229009e-50 | -8.615850e-47 |
| Msa0562660 | Msa1019150 | 0.812521 | 4.065598e-51 | -8.615850e-47 |
| Msa0562660 | Msa1047080 | 0.813766 | 2.168174e-51 | -8.615850e-47 |
| Msa0562660 | Msa1065430 | 0.812943 | 3.287260e-51 | -8.615850e-47 |
| Msa0562660 | Msa1066670 | 0.811138 | 8.132363e-51 | -8.615850e-47 |
| Msa0562660 | Msa1105650 | 0.801535 | 8.600997e-49 | -8.615850e-47 |
| Msa0562660 | Msa1147740 | 0.824668 | 7.126859e-54 | -8.615850e-47 |
| Msa0562660 | Msa1161810 | 0.808935 | 2.425592e-50 | -8.615850e-47 |
| Msa0562660 | Msa1305530 | 0.802706 | 4.939637e-49 | -8.615850e-47 |
| Msa0562660 | Msa1313280 | 0.800554 | 1.365108e-48 | -8.615850e-47 |
| Msa0562660 | Msa1323410 | 0.807067 | 6.058304e-50 | -8.615850e-47 |
| Msa0562660 | Msa1389200 | 0.800624 | 1.320446e-48 | -8.615850e-47 |
| Msa0562660 | Msa1392790 | 0.823768 | 1.159399e-53 | -8.615850e-47 |
| Msa0562660 | Msa1397740 | 0.826074 | 3.311287e-54 | -8.615850e-47 |
| Msa0562660 | Msa1401270 | 0.817744 | 2.813079e-52 | -8.615850e-47 |
| Msa0562660 | Msa1430550 | 0.808612 | 2.843817e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562660 | MtrunA17_Chr8g0376151 | 93.990 | 965 | 35 | 2 | 1 | 948 | 1 | 959 | 0.0 | 1707 |
| Msa0562660 | MtrunA17_Chr5g0434681 | 47.807 | 456 | 172 | 14 | 528 | 943 | 540 | 969 | 5.45e-88 | 302 |
| Msa0562660 | MtrunA17_Chr7g0274311 | 34.928 | 418 | 221 | 13 | 541 | 939 | 481 | 866 | 3.42e-38 | 154 |
| Msa0562660 | MtrunA17_Chr7g0274311 | 46.875 | 96 | 50 | 1 | 15 | 110 | 20 | 114 | 9.67e-23 | 104 |
| Msa0562660 | MtrunA17_Chr1g0184441 | 31.362 | 389 | 235 | 8 | 567 | 941 | 496 | 866 | 3.57e-36 | 147 |
| Msa0562660 | MtrunA17_Chr1g0184441 | 36.000 | 150 | 79 | 6 | 21 | 160 | 24 | 166 | 2.78e-20 | 97.1 |
| Msa0562660 | MtrunA17_Chr3g0093241 | 48.592 | 142 | 71 | 1 | 560 | 701 | 290 | 429 | 1.43e-22 | 102 |
| Msa0562660 | MtrunA17_Chr3g0093241 | 32.759 | 174 | 101 | 5 | 1 | 160 | 1 | 172 | 1.54e-19 | 93.2 |
| Msa0562660 | MtrunA17_Chr4g0059771 | 32.370 | 173 | 103 | 4 | 1 | 161 | 1 | 171 | 6.64e-22 | 100 |
| Msa0562660 | MtrunA17_Chr4g0059771 | 49.306 | 144 | 70 | 3 | 558 | 701 | 287 | 427 | 1.87e-15 | 80.5 |
| Msa0562660 | MtrunA17_Chr7g0268041 | 44.231 | 104 | 58 | 0 | 606 | 709 | 70 | 173 | 4.40e-17 | 85.5 |
| Msa0562660 | MtrunA17_Chr1g0176391 | 27.401 | 354 | 220 | 13 | 606 | 930 | 65 | 410 | 1.77e-16 | 83.6 |
| Msa0562660 | MtrunA17_Chr4g0003901 | 47.664 | 107 | 56 | 0 | 596 | 702 | 279 | 385 | 3.91e-16 | 82.4 |
| Msa0562660 | MtrunA17_Chr4g0003911 | 50.000 | 92 | 46 | 0 | 609 | 700 | 280 | 371 | 6.52e-16 | 82.4 |
| Msa0562660 | MtrunA17_Chr4g0049631 | 38.000 | 100 | 62 | 0 | 606 | 705 | 303 | 402 | 1.35e-14 | 77.4 |
| Msa0562660 | MtrunA17_Chr2g0307041 | 37.864 | 103 | 64 | 0 | 600 | 702 | 13 | 115 | 7.12e-14 | 74.7 |
| Msa0562660 | MtrunA17_Chr2g0279771 | 33.974 | 156 | 93 | 4 | 556 | 705 | 84 | 235 | 3.67e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562660 | AT1G70750.1 | 40.708 | 678 | 219 | 27 | 305 | 948 | 221 | 749 | 1.19e-102 | 337 |
| Msa0562660 | AT1G70750.1 | 59.794 | 97 | 38 | 1 | 1 | 96 | 1 | 97 | 2.20e-31 | 132 |
| Msa0562660 | AT5G16720.1 | 45.455 | 396 | 159 | 12 | 558 | 938 | 310 | 663 | 6.06e-79 | 271 |
| Msa0562660 | AT5G16720.1 | 36.872 | 179 | 81 | 3 | 1 | 178 | 1 | 148 | 7.34e-34 | 139 |
| Msa0562660 | AT2G30690.1 | 58.537 | 123 | 49 | 2 | 591 | 713 | 602 | 722 | 1.69e-29 | 126 |
| Msa0562660 | AT2G30690.1 | 38.235 | 102 | 55 | 2 | 15 | 115 | 13 | 107 | 4.10e-16 | 83.6 |
| Msa0562660 | AT2G30690.2 | 58.537 | 123 | 49 | 2 | 591 | 713 | 602 | 722 | 1.69e-29 | 126 |
| Msa0562660 | AT2G30690.2 | 38.235 | 102 | 55 | 2 | 15 | 115 | 13 | 107 | 4.10e-16 | 83.6 |
| Msa0562660 | AT1G08800.2 | 43.269 | 208 | 86 | 7 | 570 | 773 | 862 | 1041 | 3.04e-29 | 126 |
| Msa0562660 | AT1G08800.2 | 41.748 | 103 | 59 | 1 | 14 | 115 | 3 | 105 | 4.39e-21 | 100 |
| Msa0562660 | AT1G08800.4 | 43.269 | 208 | 86 | 7 | 570 | 773 | 862 | 1041 | 3.04e-29 | 126 |
| Msa0562660 | AT1G08800.4 | 41.748 | 103 | 59 | 1 | 14 | 115 | 3 | 105 | 4.39e-21 | 100 |
| Msa0562660 | AT1G08800.3 | 43.269 | 208 | 86 | 7 | 570 | 773 | 862 | 1041 | 3.04e-29 | 126 |
| Msa0562660 | AT1G08800.3 | 41.748 | 103 | 59 | 1 | 14 | 115 | 3 | 105 | 4.39e-21 | 100 |
| Msa0562660 | AT1G08800.1 | 43.269 | 208 | 86 | 7 | 570 | 773 | 862 | 1041 | 3.04e-29 | 126 |
| Msa0562660 | AT1G08800.1 | 41.748 | 103 | 59 | 1 | 14 | 115 | 3 | 105 | 4.39e-21 | 100 |
| Msa0562660 | AT1G74830.1 | 62.136 | 103 | 39 | 0 | 599 | 701 | 298 | 400 | 5.36e-26 | 114 |
| Msa0562660 | AT1G74830.1 | 33.043 | 115 | 77 | 0 | 1 | 115 | 20 | 134 | 2.15e-18 | 90.5 |
| Msa0562660 | AT1G18990.1 | 44.444 | 198 | 86 | 4 | 594 | 772 | 292 | 484 | 1.08e-23 | 106 |
| Msa0562660 | AT1G18990.1 | 35.652 | 115 | 74 | 0 | 1 | 115 | 1 | 115 | 7.11e-12 | 69.7 |
| Msa0562660 | AT4G13630.2 | 46.429 | 140 | 61 | 3 | 581 | 706 | 186 | 325 | 1.42e-20 | 97.4 |
| Msa0562660 | AT4G13630.1 | 46.429 | 140 | 61 | 3 | 581 | 706 | 186 | 325 | 1.42e-20 | 97.4 |
| Msa0562660 | AT3G54740.8 | 38.150 | 173 | 87 | 5 | 580 | 737 | 5 | 172 | 4.73e-19 | 90.9 |
| Msa0562660 | AT3G54740.1 | 38.150 | 173 | 87 | 5 | 580 | 737 | 5 | 172 | 4.73e-19 | 90.9 |
| Msa0562660 | AT3G54740.7 | 38.150 | 173 | 87 | 5 | 580 | 737 | 5 | 172 | 4.73e-19 | 90.9 |
| Msa0562660 | AT3G54740.4 | 38.150 | 173 | 87 | 5 | 580 | 737 | 5 | 172 | 4.73e-19 | 90.9 |
| Msa0562660 | AT3G54740.3 | 40.690 | 145 | 75 | 3 | 580 | 718 | 53 | 192 | 6.82e-19 | 91.3 |
| Msa0562660 | AT3G54740.6 | 40.690 | 145 | 75 | 3 | 580 | 718 | 53 | 192 | 6.82e-19 | 91.3 |
| Msa0562660 | AT3G54740.2 | 40.690 | 145 | 75 | 3 | 580 | 718 | 53 | 192 | 6.82e-19 | 91.3 |
| Msa0562660 | AT3G54740.5 | 40.690 | 145 | 75 | 3 | 580 | 718 | 53 | 192 | 6.82e-19 | 91.3 |
| Msa0562660 | AT1G04890.1 | 49.123 | 114 | 56 | 1 | 587 | 700 | 97 | 208 | 1.09e-17 | 87.0 |
| Msa0562660 | AT5G06560.1 | 38.710 | 124 | 69 | 1 | 603 | 719 | 71 | 194 | 2.31e-16 | 84.0 |
| Msa0562660 | AT4G13160.1 | 54.255 | 94 | 43 | 0 | 606 | 699 | 117 | 210 | 2.77e-16 | 80.9 |
| Msa0562660 | AT4G30830.1 | 41.237 | 97 | 57 | 0 | 606 | 702 | 18 | 114 | 9.12e-12 | 68.2 |
| Msa0562660 | AT4G30830.2 | 41.237 | 97 | 57 | 0 | 606 | 702 | 18 | 114 | 9.12e-12 | 68.2 |
Find 154 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCATTCTATGAACATTT+TGG | 0.131796 | 4_1:-62649433 | Msa0562660:CDS |
| ATTGAGAATTGGCATATTTC+TGG | 0.136020 | 4_1:-62648823 | Msa0562660:CDS |
| ATAAAGTTTGCTGATTATTT+TGG | 0.145806 | 4_1:-62649822 | Msa0562660:CDS |
| CTTGAATTTGGTCTAGTTAA+AGG | 0.148616 | 4_1:-62649147 | Msa0562660:CDS |
| TGAGAAACTTTAACATAATT+TGG | 0.156677 | 4_1:+62649603 | None:intergenic |
| GATCTTTACAAGCTTGAATT+TGG | 0.214775 | 4_1:-62649159 | Msa0562660:CDS |
| ATTTGAACAGAAAACCAATT+TGG | 0.216246 | 4_1:+62649689 | None:intergenic |
| TGCTGTTGAGATTTCCAAAT+TGG | 0.222106 | 4_1:-62649703 | Msa0562660:CDS |
| TGTAGATGCAGTGTTATATT+TGG | 0.222974 | 4_1:-62647224 | Msa0562660:CDS |
| ATATGCCAATTCTCAATTAA+TGG | 0.225334 | 4_1:+62648829 | None:intergenic |
| CTTCAACATTATCATCCTTA+TGG | 0.236723 | 4_1:+62648683 | None:intergenic |
| AGGTGGTGGATGAAGGGTTT+AGG | 0.257520 | 4_1:-62648906 | Msa0562660:CDS |
| GACCAATTTGGATAAGAAAA+AGG | 0.267318 | 4_1:-62646822 | Msa0562660:CDS |
| TTCAGCTGAAAAGACCAATT+TGG | 0.270275 | 4_1:-62646834 | Msa0562660:CDS |
| GAATCCACTGCCATAGAAAA+TGG | 0.280746 | 4_1:-62648949 | Msa0562660:CDS |
| AAACAATGGCAATGATTAAT+AGG | 0.281888 | 4_1:-62647688 | Msa0562660:CDS |
| AAGATGTCAAAACTGTATTT+TGG | 0.282209 | 4_1:+62650055 | None:intergenic |
| TTTGAGGTTGAACATGATTC+AGG | 0.302213 | 4_1:-62649255 | Msa0562660:CDS |
| GGTGGTGGATGAAGGGTTTA+GGG | 0.316455 | 4_1:-62648905 | Msa0562660:CDS |
| TAACCATATGCCATCATCTT+TGG | 0.322498 | 4_1:-62647978 | Msa0562660:CDS |
| TTGAATTTGGTCTAGTTAAA+GGG | 0.331693 | 4_1:-62649146 | Msa0562660:CDS |
| TATTAATCATTGCCATTGTT+TGG | 0.341144 | 4_1:+62647690 | None:intergenic |
| GATTGCCAAGGTCATGTAAA+TGG | 0.341174 | 4_1:-62647013 | Msa0562660:CDS |
| AAGGAAATAGATATGATTAA+TGG | 0.355425 | 4_1:-62649555 | Msa0562660:CDS |
| GGATTATCAAAATCCATTCT+AGG | 0.356919 | 4_1:+62649880 | None:intergenic |
| CTGAACCATTAATTGAGAAT+TGG | 0.357086 | 4_1:-62648834 | Msa0562660:CDS |
| TGATCATCATCCTGAGCCTT+TGG | 0.368054 | 4_1:+62649084 | None:intergenic |
| TCATTGAGAAAAGGGGATAA+AGG | 0.370415 | 4_1:-62646713 | Msa0562660:CDS |
| CAGTTTGATTCCTGTTGAAT+TGG | 0.375927 | 4_1:-62648974 | Msa0562660:CDS |
| TCATCCATTTGTTCATGATC+AGG | 0.416480 | 4_1:+62648418 | None:intergenic |
| AAAGAGAATTTAGAAGAAGA+AGG | 0.420703 | 4_1:+62649859 | None:intergenic |
| CTGCATCTACAGGAGTGTTC+TGG | 0.423518 | 4_1:+62647236 | None:intergenic |
| CATGGCCTCTTGATCGTACT+CGG | 0.423566 | 4_1:+62647598 | None:intergenic |
| TATGAAGCAGAAGTATCAAT+TGG | 0.425288 | 4_1:-62648451 | Msa0562660:CDS |
| TCAAGGCCAGGATATTCTTT+CGG | 0.427039 | 4_1:-62648392 | Msa0562660:CDS |
| AACATCTTTGTGAAGAGAAC+GGG | 0.429017 | 4_1:-62647072 | Msa0562660:CDS |
| TGATGGTGTCAAGGAAACTA+TGG | 0.430020 | 4_1:-62649187 | Msa0562660:CDS |
| TGCAGTTGATGAAGACTCTC+TGG | 0.430520 | 4_1:+62647908 | None:intergenic |
| TCTGGAGAAGTCGGTGTGTC+GGG | 0.431515 | 4_1:+62647926 | None:intergenic |
| CATTGAGAAAAGGGGATAAA+GGG | 0.434221 | 4_1:-62646712 | Msa0562660:CDS |
| TACAACATCTACGTGATTTG+AGG | 0.434349 | 4_1:-62646667 | Msa0562660:CDS |
| TGCAAACTTGTTGGCAGCCA+TGG | 0.435469 | 4_1:+62649956 | None:intergenic |
| GTATCAGCTCATTGAGAAAA+GGG | 0.444188 | 4_1:-62646721 | Msa0562660:CDS |
| AATCATTGCCATTGTTTGGT+TGG | 0.446872 | 4_1:+62647694 | None:intergenic |
| TAGTTTATGCAATCCTAGAA+TGG | 0.449778 | 4_1:-62649893 | Msa0562660:CDS |
| GTCAGGAACAGAAGATTCAT+TGG | 0.455379 | 4_1:-62647855 | Msa0562660:CDS |
| GGGAATTGAGAAAGTTGAAG+AGG | 0.456395 | 4_1:-62649520 | Msa0562660:CDS |
| GGTTGGTTTAGAAGAGGAGG+TGG | 0.457431 | 4_1:-62646801 | Msa0562660:CDS |
| GTGGATTCAACCAATTCAAC+AGG | 0.460558 | 4_1:+62648964 | None:intergenic |
| CATGTAAATGGATTTGCAAA+TGG | 0.462247 | 4_1:-62647001 | Msa0562660:CDS |
| CCTCTTTGCTTTGGTAGCCA+AGG | 0.464758 | 4_1:+62646949 | None:intergenic |
| TGGTAGAAGCCTCTTTGCTT+TGG | 0.470032 | 4_1:+62646940 | None:intergenic |
| AGGCTTACCACTATCATGTT+GGG | 0.473913 | 4_1:+62648315 | None:intergenic |
| AATGGATTTGCAAATGGTAA+TGG | 0.475509 | 4_1:-62646995 | Msa0562660:CDS |
| TGTATCAGCTCATTGAGAAA+AGG | 0.475886 | 4_1:-62646722 | Msa0562660:CDS |
| GGCATATGGTTACTTGCTGT+TGG | 0.479086 | 4_1:+62647989 | None:intergenic |
| CAAATCCATTTACATGACCT+TGG | 0.479859 | 4_1:+62647008 | None:intergenic |
| ATATCTATTTCCTTCATCCA+TGG | 0.485123 | 4_1:+62649564 | None:intergenic |
| TCTCAAAGTTTCCTCTTCCA+AGG | 0.486049 | 4_1:+62649116 | None:intergenic |
| AATTCCTGATCATGAACAAA+TGG | 0.488142 | 4_1:-62648422 | Msa0562660:CDS |
| TGTGATAAGGTGGTGGATGA+AGG | 0.488525 | 4_1:-62648913 | Msa0562660:CDS |
| CTAGGTTCATATGCTTCTCT+AGG | 0.491090 | 4_1:-62648619 | Msa0562660:intron |
| GCTCCAAAGATGATGGCATA+TGG | 0.491881 | 4_1:+62647975 | None:intergenic |
| TCACATCTTGATAATTCAGT+TGG | 0.496380 | 4_1:+62648731 | None:intergenic |
| CTCTGGAGAAGTCGGTGTGT+CGG | 0.497856 | 4_1:+62647925 | None:intergenic |
| ACTAGAACAGCTGAAAGTAT+TGG | 0.499006 | 4_1:-62647161 | Msa0562660:CDS |
| GAATGATCTTATATTGAAGA+GGG | 0.501695 | 4_1:-62647567 | Msa0562660:CDS |
| CATTCTTAATTCAAGTGACA+TGG | 0.503402 | 4_1:+62648012 | None:intergenic |
| TGTGCTTGTTCTGTTTGTGA+TGG | 0.503760 | 4_1:-62649204 | Msa0562660:CDS |
| TTTCTTGAGAGGAAAGGGTC+AGG | 0.507647 | 4_1:-62647872 | Msa0562660:CDS |
| TGGAATTCATATGTTGTTTG+AGG | 0.507732 | 4_1:-62649271 | Msa0562660:CDS |
| GGAATTGAGAAAGTTGAAGA+GGG | 0.509648 | 4_1:-62649519 | Msa0562660:CDS |
| AAATATAACACTGCATCTAC+AGG | 0.510556 | 4_1:+62647226 | None:intergenic |
| AACATGGAAAGAATGATGAA+TGG | 0.512778 | 4_1:-62648658 | Msa0562660:CDS |
| AAATCAAAGTAGATGTGATA+AGG | 0.513014 | 4_1:-62648926 | Msa0562660:CDS |
| AATGGATGAAGAATTCCATA+AGG | 0.515532 | 4_1:-62648698 | Msa0562660:CDS |
| GAACAAATGGATGAGTATCA+AGG | 0.515576 | 4_1:-62648409 | Msa0562660:CDS |
| TTTAATGCCCAACATGATAG+TGG | 0.517123 | 4_1:-62648322 | Msa0562660:intron |
| ATTCATCTACTAGCTCAGTC+AGG | 0.517217 | 4_1:-62648345 | Msa0562660:CDS |
| AGATGCAGTGTTATATTTGG+AGG | 0.519455 | 4_1:-62647221 | Msa0562660:CDS |
| TGATTCAACCTCATTGACCT+TGG | 0.522706 | 4_1:+62648756 | None:intergenic |
| GAGGCTTACCACTATCATGT+TGG | 0.523454 | 4_1:+62648314 | None:intergenic |
| CTTTGTGAAGAGAACGGGAA+TGG | 0.524088 | 4_1:-62647067 | Msa0562660:CDS |
| AAAGGTTGGTTTAGAAGAGG+AGG | 0.524445 | 4_1:-62646804 | Msa0562660:CDS |
| TTTGAGATTGAATGTTCCAA+AGG | 0.527554 | 4_1:-62649100 | Msa0562660:CDS |
| ATTGAATGTTCCAAAGGCTC+AGG | 0.527773 | 4_1:-62649094 | Msa0562660:CDS |
| ATTAATGGTGCTGATGGAAA+GGG | 0.530637 | 4_1:-62649540 | Msa0562660:CDS |
| GGAATGTGGAACTCAGAGTC+AGG | 0.532375 | 4_1:-62646646 | Msa0562660:CDS |
| TTATGAGAGACTACAGGTGC+TGG | 0.533066 | 4_1:-62646771 | Msa0562660:CDS |
| AATTCTTGCACACCACATGC+AGG | 0.534692 | 4_1:+62649788 | None:intergenic |
| TTCTGTTTGTGATGGTGTCA+AGG | 0.536392 | 4_1:-62649196 | Msa0562660:CDS |
| AAGCAGAATATGATCAAAGA+AGG | 0.536879 | 4_1:-62649390 | Msa0562660:CDS |
| GATATGATTAATGGTGCTGA+TGG | 0.537087 | 4_1:-62649546 | Msa0562660:CDS |
| TAACATGGTTGCAAACTTGT+TGG | 0.542372 | 4_1:+62649947 | None:intergenic |
| AGGGAATGAAACCTTGGAAG+AGG | 0.544502 | 4_1:-62649127 | Msa0562660:CDS |
| TCATTAAGCTCCAAAGATGA+TGG | 0.545657 | 4_1:+62647968 | None:intergenic |
| GTTGGTGTTTCTGTGTAACA+TGG | 0.547580 | 4_1:+62649932 | None:intergenic |
| GAAGAAGATGTAGAGTTGAG+TGG | 0.548263 | 4_1:-62646896 | Msa0562660:CDS |
| GGAACAGAAGATTCATTGGA+TGG | 0.549334 | 4_1:-62647851 | Msa0562660:CDS |
| GATTAATGGTGCTGATGGAA+AGG | 0.550398 | 4_1:-62649541 | Msa0562660:CDS |
| AATGGATGAGTATCAAGGCC+AGG | 0.550806 | 4_1:-62648404 | Msa0562660:CDS |
| TGAATGATCTTATATTGAAG+AGG | 0.551934 | 4_1:-62647568 | Msa0562660:CDS |
| AGTTAAAGGGAATGAAACCT+TGG | 0.554879 | 4_1:-62649133 | Msa0562660:CDS |
| AGAGAAAGCAGCAATGCAGA+TGG | 0.554976 | 4_1:-62647657 | Msa0562660:CDS |
| TGATAATGTTGAAGTAAACA+TGG | 0.559435 | 4_1:-62648674 | Msa0562660:CDS |
| AAGATCATTCAAAATTTGCA+TGG | 0.559900 | 4_1:+62647580 | None:intergenic |
| GAACTCAGAGTCAGGAACAT+AGG | 0.561039 | 4_1:-62646638 | Msa0562660:CDS |
| GCATATTTCTGGTGATATTG+TGG | 0.561331 | 4_1:-62648812 | Msa0562660:CDS |
| TCCTCAGCATTGCTACAAGA+AGG | 0.569143 | 4_1:+62647422 | None:intergenic |
| GGAGCTTAATGAGAATGAAG+AGG | 0.572531 | 4_1:-62647957 | Msa0562660:CDS |
| GAACATCTTTGTGAAGAGAA+CGG | 0.575073 | 4_1:-62647073 | Msa0562660:CDS |
| GAATGATCAATAACAATGCA+AGG | 0.581504 | 4_1:+62649447 | None:intergenic |
| GTAATAAGCGACATAGAATG+TGG | 0.584482 | 4_1:-62647824 | Msa0562660:CDS |
| TTGTATCCGAAAGAATATCC+TGG | 0.587704 | 4_1:+62648386 | None:intergenic |
| TCATGTTTATGAGAGACTAC+AGG | 0.588265 | 4_1:-62646777 | Msa0562660:CDS |
| GGTAATGGAAAGCATCATCA+AGG | 0.588406 | 4_1:-62646980 | Msa0562660:CDS |
| TGAAGACTCTCTGGAGAAGT+CGG | 0.591017 | 4_1:+62647917 | None:intergenic |
| ATGGAAAGCATCATCAAGGA+AGG | 0.594579 | 4_1:-62646976 | Msa0562660:CDS |
| GATCAATAACAATGCAAGGA+GGG | 0.594685 | 4_1:+62649451 | None:intergenic |
| GTGATAAGGTGGTGGATGAA+GGG | 0.595305 | 4_1:-62648912 | Msa0562660:CDS |
| TCATCAAGGAAGGAAAGCCT+TGG | 0.596668 | 4_1:-62646966 | Msa0562660:CDS |
| GGTTTGAGATGTTCTTGCTG+TGG | 0.598600 | 4_1:-62649498 | Msa0562660:CDS |
| AAGTAGATGTGATAAGGTGG+TGG | 0.604910 | 4_1:-62648920 | Msa0562660:CDS |
| TCAAAGTAGATGTGATAAGG+TGG | 0.607207 | 4_1:-62648923 | Msa0562660:CDS |
| TAATAAGCGACATAGAATGT+GGG | 0.612943 | 4_1:-62647823 | Msa0562660:CDS |
| TCTACGTGATTTGAGGAATG+TGG | 0.613878 | 4_1:-62646660 | Msa0562660:CDS |
| AATCCGCATTGAAATCTGAA+AGG | 0.616105 | 4_1:-62647778 | Msa0562660:CDS |
| TCCTTCTTGTAGCAATGCTG+AGG | 0.616582 | 4_1:-62647423 | Msa0562660:CDS |
| ACAATCCGAGTACGATCAAG+AGG | 0.619408 | 4_1:-62647603 | Msa0562660:CDS |
| GACGATCATGATGATTGCCA+AGG | 0.621981 | 4_1:-62647025 | Msa0562660:CDS |
| TTTGCAGTATCAGAGAATGA+TGG | 0.624136 | 4_1:-62647630 | Msa0562660:CDS |
| AAATGTGTCCAAGGTCAATG+AGG | 0.633487 | 4_1:-62648764 | Msa0562660:CDS |
| GATGATGCATCACAAACTCA+AGG | 0.634789 | 4_1:-62648484 | Msa0562660:CDS |
| ATTCTTGCACACCACATGCA+GGG | 0.636899 | 4_1:+62649789 | None:intergenic |
| GATTGCATAAACTAGAACAA+GGG | 0.638161 | 4_1:+62649902 | None:intergenic |
| ATCACAAACTCAAGGTGAGG+AGG | 0.642622 | 4_1:-62648476 | Msa0562660:CDS |
| CAGGAACATAGGAGATCTTG+CGG | 0.643584 | 4_1:-62646627 | Msa0562660:CDS |
| CCTTGGCTACCAAAGCAAAG+AGG | 0.643663 | 4_1:-62646949 | Msa0562660:CDS |
| TATCAGCTCATTGAGAAAAG+GGG | 0.648271 | 4_1:-62646720 | Msa0562660:CDS |
| GGATTGCATAAACTAGAACA+AGG | 0.648751 | 4_1:+62649901 | None:intergenic |
| TGCATCACAAACTCAAGGTG+AGG | 0.653414 | 4_1:-62648479 | Msa0562660:CDS |
| TGAGAGACTACAGGTGCTGG+AGG | 0.661068 | 4_1:-62646768 | Msa0562660:CDS |
| TGTAGCAGCCAACCAAACAA+TGG | 0.661180 | 4_1:-62647702 | Msa0562660:CDS |
| TCACACACAAGATCTCTACA+AGG | 0.661299 | 4_1:+62649732 | None:intergenic |
| CAAAACATTGAAGAAAACAG+TGG | 0.667489 | 4_1:-62649291 | Msa0562660:CDS |
| AAACAGAGCATCATCAACCA+TGG | 0.669111 | 4_1:-62649973 | Msa0562660:exon |
| AGCAATGCTGAGGATAGTGA+TGG | 0.670528 | 4_1:-62647413 | Msa0562660:CDS |
| GCCTGAAAAGACCCTGCATG+TGG | 0.674969 | 4_1:-62649800 | Msa0562660:CDS |
| TGATCAATAACAATGCAAGG+AGG | 0.675124 | 4_1:+62649450 | None:intergenic |
| AATAAGCGACATAGAATGTG+GGG | 0.691762 | 4_1:-62647822 | Msa0562660:CDS |
| TGTTGAAGTTGAGAAAACTG+AGG | 0.695566 | 4_1:-62649043 | Msa0562660:CDS |
| TTTCCTTTCAGATTTCAATG+CGG | 0.738763 | 4_1:+62647775 | None:intergenic |
| GCAATGCTGAGGATAGTGAT+GGG | 0.743329 | 4_1:-62647412 | Msa0562660:intron |
| TGAATCAGATGACATGTGTG+AGG | 0.748728 | 4_1:-62649652 | Msa0562660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTGCAATATGTAATT+AGG | - | chr4_1:62648659-62648678 | Msa0562660:CDS | 15.0% |
| !! | GTACAAAAGAAAAAAGAAAA+AGG | + | chr4_1:62646721-62646740 | None:intergenic | 20.0% |
| !!! | ATAAAGTTTGCTGATTATTT+TGG | - | chr4_1:62646910-62646929 | Msa0562660:CDS | 20.0% |
| !! | TGAGAAACTTTAACATAATT+TGG | + | chr4_1:62647132-62647151 | None:intergenic | 20.0% |
| !! | AAGGAAATAGATATGATTAA+TGG | - | chr4_1:62647177-62647196 | Msa0562660:CDS | 20.0% |
| !! | ATGAAAAATTCAAGATGTTT+GGG | + | chr4_1:62647723-62647742 | None:intergenic | 20.0% |
| !! | AATGAAAAATTCAAGATGTT+TGG | + | chr4_1:62647724-62647743 | None:intergenic | 20.0% |
| !!! | GAAGATTTTATTCTTGATTT+TGG | - | chr4_1:62647855-62647874 | Msa0562660:CDS | 20.0% |
| !!! | CCTCTAAAACATTTTTATTA+GGG | - | chr4_1:62648566-62648585 | Msa0562660:intron | 20.0% |
| !! | AAGATGTCAAAACTGTATTT+TGG | + | chr4_1:62646680-62646699 | None:intergenic | 25.0% |
| ! | AAAGAGAATTTAGAAGAAGA+AGG | + | chr4_1:62646876-62646895 | None:intergenic | 25.0% |
| ! | ATTTGAACAGAAAACCAATT+TGG | + | chr4_1:62647046-62647065 | None:intergenic | 25.0% |
| !! | AAAGTTTAGATGTTTTTCCA+TGG | - | chr4_1:62647151-62647170 | Msa0562660:CDS | 25.0% |
| !! | TGATCATTCTATGAACATTT+TGG | - | chr4_1:62647299-62647318 | Msa0562660:intron | 25.0% |
| ! | TTGAATTTGGTCTAGTTAAA+GGG | - | chr4_1:62647586-62647605 | Msa0562660:CDS | 25.0% |
| !! | CATCTTGAATTTTTCATTCA+TGG | - | chr4_1:62647726-62647745 | Msa0562660:CDS | 25.0% |
| !!! | ACTTTGATTTCCATTTTCTA+TGG | + | chr4_1:62647796-62647815 | None:intergenic | 25.0% |
| ! | AAATCAAAGTAGATGTGATA+AGG | - | chr4_1:62647806-62647825 | Msa0562660:CDS | 25.0% |
| ! | ATATGCCAATTCTCAATTAA+TGG | + | chr4_1:62647906-62647925 | None:intergenic | 25.0% |
| !! | TGATAATGTTGAAGTAAACA+TGG | - | chr4_1:62648058-62648077 | Msa0562660:intron | 25.0% |
| !!! | ATGATGAATGGATATTTTGA+TGG | - | chr4_1:62648086-62648105 | Msa0562660:intron | 25.0% |
| ! | AGAAGGAAAACAATAAATTG+AGG | + | chr4_1:62648440-62648459 | None:intergenic | 25.0% |
| ! | TACATTTGCCAACATTATAA+AGG | + | chr4_1:62648516-62648535 | None:intergenic | 25.0% |
| !!! | GCCTCTAAAACATTTTTATT+AGG | - | chr4_1:62648565-62648584 | Msa0562660:intron | 25.0% |
| !!! | CCCTAATAAAAATGTTTTAG+AGG | + | chr4_1:62648569-62648588 | None:intergenic | 25.0% |
| !!! | TCTAAGAATGGTTCTAAATA+CGG | + | chr4_1:62648592-62648611 | None:intergenic | 25.0% |
| !!! | TCATTAGAAAGTTCTAAGAA+TGG | + | chr4_1:62648604-62648623 | None:intergenic | 25.0% |
| !!! | AGAAATTACTTTTTCTTGAG+AGG | - | chr4_1:62648849-62648868 | Msa0562660:CDS | 25.0% |
| ! | TATTAATCATTGCCATTGTT+TGG | + | chr4_1:62649045-62649064 | None:intergenic | 25.0% |
| ! | AAACAATGGCAATGATTAAT+AGG | - | chr4_1:62649044-62649063 | Msa0562660:CDS | 25.0% |
| ! | AAGATCATTCAAAATTTGCA+TGG | + | chr4_1:62649155-62649174 | None:intergenic | 25.0% |
| ! | TGAATGATCTTATATTGAAG+AGG | - | chr4_1:62649164-62649183 | Msa0562660:CDS | 25.0% |
| ! | GAATGATCTTATATTGAAGA+GGG | - | chr4_1:62649165-62649184 | Msa0562660:CDS | 25.0% |
| ! | GCTTGAAGTATATAGAAAAA+AGG | - | chr4_1:62649216-62649235 | Msa0562660:CDS | 25.0% |
| !! | AACCTTTTTCTTATCCAAAT+TGG | + | chr4_1:62649915-62649934 | None:intergenic | 25.0% |
| ! | AATTTGGATAAGAAAAAGGT+TGG | - | chr4_1:62649914-62649933 | Msa0562660:CDS | 25.0% |
| TGTACATAGCAAAAAAACAG+AGG | - | chr4_1:62646736-62646755 | Msa0562660:CDS | 30.0% | |
| GATTGCATAAACTAGAACAA+GGG | + | chr4_1:62646833-62646852 | None:intergenic | 30.0% | |
| TAGTTTATGCAATCCTAGAA+TGG | - | chr4_1:62646839-62646858 | Msa0562660:CDS | 30.0% | |
| GGATTATCAAAATCCATTCT+AGG | + | chr4_1:62646855-62646874 | None:intergenic | 30.0% | |
| ATATCTATTTCCTTCATCCA+TGG | + | chr4_1:62647171-62647190 | None:intergenic | 30.0% | |
| GAATGATCAATAACAATGCA+AGG | + | chr4_1:62647288-62647307 | None:intergenic | 30.0% | |
| AAGCAGAATATGATCAAAGA+AGG | - | chr4_1:62647342-62647361 | Msa0562660:intron | 30.0% | |
| CAAAACATTGAAGAAAACAG+TGG | - | chr4_1:62647441-62647460 | Msa0562660:CDS | 30.0% | |
| ! | TGGAATTCATATGTTGTTTG+AGG | - | chr4_1:62647461-62647480 | Msa0562660:CDS | 30.0% |
| TGATTCAGGTACAAAAAAAG+TGG | - | chr4_1:62647491-62647510 | Msa0562660:CDS | 30.0% | |
| GATCTTTACAAGCTTGAATT+TGG | - | chr4_1:62647573-62647592 | Msa0562660:CDS | 30.0% | |
| CTTGAATTTGGTCTAGTTAA+AGG | - | chr4_1:62647585-62647604 | Msa0562660:CDS | 30.0% | |
| ! | TTTGAGATTGAATGTTCCAA+AGG | - | chr4_1:62647632-62647651 | Msa0562660:CDS | 30.0% |
| AAAAATTCAAGATGTTTGGG+TGG | + | chr4_1:62647720-62647739 | None:intergenic | 30.0% | |
| CTGAACCATTAATTGAGAAT+TGG | - | chr4_1:62647898-62647917 | Msa0562660:CDS | 30.0% | |
| ATTGAGAATTGGCATATTTC+TGG | - | chr4_1:62647909-62647928 | Msa0562660:CDS | 30.0% | |
| AGAGAATAAAAATGTGTCCA+AGG | - | chr4_1:62647959-62647978 | Msa0562660:CDS | 30.0% | |
| ! | TCACATCTTGATAATTCAGT+TGG | + | chr4_1:62648004-62648023 | None:intergenic | 30.0% |
| ! | AGATGTGAGATTTTCTCAAA+TGG | - | chr4_1:62648016-62648035 | Msa0562660:CDS | 30.0% |
| AATGGATGAAGAATTCCATA+AGG | - | chr4_1:62648034-62648053 | Msa0562660:CDS | 30.0% | |
| CTTCAACATTATCATCCTTA+TGG | + | chr4_1:62648052-62648071 | None:intergenic | 30.0% | |
| AACATGGAAAGAATGATGAA+TGG | - | chr4_1:62648074-62648093 | Msa0562660:intron | 30.0% | |
| !! | TATGAAGCAGAAGTATCAAT+TGG | - | chr4_1:62648281-62648300 | Msa0562660:intron | 30.0% |
| AATTCCTGATCATGAACAAA+TGG | - | chr4_1:62648310-62648329 | Msa0562660:intron | 30.0% | |
| ! | TAAAATCATGGTTCTATGCA+TGG | + | chr4_1:62648472-62648491 | None:intergenic | 30.0% |
| ! | AGAACCATGATTTTAAATCG+AGG | - | chr4_1:62648477-62648496 | Msa0562660:CDS | 30.0% |
| CATTCTTAATTCAAGTGACA+TGG | + | chr4_1:62648723-62648742 | None:intergenic | 30.0% | |
| !!! | TTACTTTTTCTTGAGAGGAA+AGG | - | chr4_1:62648854-62648873 | Msa0562660:CDS | 30.0% |
| !!! | TACTTTTTCTTGAGAGGAAA+GGG | - | chr4_1:62648855-62648874 | Msa0562660:CDS | 30.0% |
| TAATAAGCGACATAGAATGT+GGG | - | chr4_1:62648909-62648928 | Msa0562660:CDS | 30.0% | |
| TTTCCTTTCAGATTTCAATG+CGG | + | chr4_1:62648960-62648979 | None:intergenic | 30.0% | |
| AAAAAAGGTTCATGAGTATG+AGG | - | chr4_1:62649231-62649250 | Msa0562660:CDS | 30.0% | |
| AAATATAACACTGCATCTAC+AGG | + | chr4_1:62649509-62649528 | None:intergenic | 30.0% | |
| TGTAGATGCAGTGTTATATT+TGG | - | chr4_1:62649508-62649527 | Msa0562660:CDS | 30.0% | |
| ! | GGAATCATTGTCAAATTTTG+AGG | - | chr4_1:62649532-62649551 | Msa0562660:CDS | 30.0% |
| ! | CATGTAAATGGATTTGCAAA+TGG | - | chr4_1:62649731-62649750 | Msa0562660:CDS | 30.0% |
| ! | AATGGATTTGCAAATGGTAA+TGG | - | chr4_1:62649737-62649756 | Msa0562660:CDS | 30.0% |
| GACCAATTTGGATAAGAAAA+AGG | - | chr4_1:62649910-62649929 | Msa0562660:CDS | 30.0% | |
| TAACATGGTTGCAAACTTGT+TGG | + | chr4_1:62646788-62646807 | None:intergenic | 35.0% | |
| ! | TAGAACAAGGGTGATTTTGT+TGG | + | chr4_1:62646821-62646840 | None:intergenic | 35.0% |
| GGATTGCATAAACTAGAACA+AGG | + | chr4_1:62646834-62646853 | None:intergenic | 35.0% | |
| TGCTGTTGAGATTTCCAAAT+TGG | - | chr4_1:62647029-62647048 | Msa0562660:CDS | 35.0% | |
| ! | AGATGTTTTTCCATGGATGA+AGG | - | chr4_1:62647158-62647177 | Msa0562660:CDS | 35.0% |
| ! | GATATGATTAATGGTGCTGA+TGG | - | chr4_1:62647186-62647205 | Msa0562660:CDS | 35.0% |
| !! | ATTAATGGTGCTGATGGAAA+GGG | - | chr4_1:62647192-62647211 | Msa0562660:CDS | 35.0% |
| GGAATTGAGAAAGTTGAAGA+GGG | - | chr4_1:62647213-62647232 | Msa0562660:CDS | 35.0% | |
| GATCAATAACAATGCAAGGA+GGG | + | chr4_1:62647284-62647303 | None:intergenic | 35.0% | |
| TGATCAATAACAATGCAAGG+AGG | + | chr4_1:62647285-62647304 | None:intergenic | 35.0% | |
| ! | TTTGAGGTTGAACATGATTC+AGG | - | chr4_1:62647477-62647496 | Msa0562660:CDS | 35.0% |
| TTCAGGTACAAAAAAAGTGG+AGG | - | chr4_1:62647494-62647513 | Msa0562660:CDS | 35.0% | |
| AGTTAAAGGGAATGAAACCT+TGG | - | chr4_1:62647599-62647618 | Msa0562660:CDS | 35.0% | |
| TGTTGAAGTTGAGAAAACTG+AGG | - | chr4_1:62647689-62647708 | Msa0562660:CDS | 35.0% | |
| CAGTTTGATTCCTGTTGAAT+TGG | - | chr4_1:62647758-62647777 | Msa0562660:CDS | 35.0% | |
| ! | ATTTCCATTTTCTATGGCAG+TGG | + | chr4_1:62647790-62647809 | None:intergenic | 35.0% |
| TCAAAGTAGATGTGATAAGG+TGG | - | chr4_1:62647809-62647828 | Msa0562660:CDS | 35.0% | |
| !! | GCATATTTCTGGTGATATTG+TGG | - | chr4_1:62647920-62647939 | Msa0562660:CDS | 35.0% |
| !!! | GGATATTTTGATGGAGAACT+AGG | - | chr4_1:62648095-62648114 | Msa0562660:intron | 35.0% |
| TCATCCATTTGTTCATGATC+AGG | + | chr4_1:62648317-62648336 | None:intergenic | 35.0% | |
| GAACAAATGGATGAGTATCA+AGG | - | chr4_1:62648323-62648342 | Msa0562660:CDS | 35.0% | |
| TTGTATCCGAAAGAATATCC+TGG | + | chr4_1:62648349-62648368 | None:intergenic | 35.0% | |
| TTTAATGCCCAACATGATAG+TGG | - | chr4_1:62648410-62648429 | Msa0562660:CDS | 35.0% | |
| ! | GCAACCTCGATTTAAAATCA+TGG | + | chr4_1:62648484-62648503 | None:intergenic | 35.0% |
| TAACCATATGCCATCATCTT+TGG | - | chr4_1:62648754-62648773 | Msa0562660:CDS | 35.0% | |
| TCATTAAGCTCCAAAGATGA+TGG | + | chr4_1:62648767-62648786 | None:intergenic | 35.0% | |
| GTAATAAGCGACATAGAATG+TGG | - | chr4_1:62648908-62648927 | Msa0562660:CDS | 35.0% | |
| AATAAGCGACATAGAATGTG+GGG | - | chr4_1:62648910-62648929 | Msa0562660:CDS | 35.0% | |
| AATCCGCATTGAAATCTGAA+AGG | - | chr4_1:62648954-62648973 | Msa0562660:CDS | 35.0% | |
| AATCATTGCCATTGTTTGGT+TGG | + | chr4_1:62649041-62649060 | None:intergenic | 35.0% | |
| TTTGCAGTATCAGAGAATGA+TGG | - | chr4_1:62649102-62649121 | Msa0562660:CDS | 35.0% | |
| AGATGCAGTGTTATATTTGG+AGG | - | chr4_1:62649511-62649530 | Msa0562660:CDS | 35.0% | |
| !! | TGTCAAATTTTGAGGAAGAG+AGG | - | chr4_1:62649540-62649559 | Msa0562660:CDS | 35.0% |
| ! | ACTAGAACAGCTGAAAGTAT+TGG | - | chr4_1:62649571-62649590 | Msa0562660:CDS | 35.0% |
| GAACATCTTTGTGAAGAGAA+CGG | - | chr4_1:62649659-62649678 | Msa0562660:CDS | 35.0% | |
| AACATCTTTGTGAAGAGAAC+GGG | - | chr4_1:62649660-62649679 | Msa0562660:CDS | 35.0% | |
| CAAATCCATTTACATGACCT+TGG | + | chr4_1:62649727-62649746 | None:intergenic | 35.0% | |
| !! | GTACTGATTGCATCAAAAAG+TGG | + | chr4_1:62649815-62649834 | None:intergenic | 35.0% |
| TTCAGCTGAAAAGACCAATT+TGG | - | chr4_1:62649898-62649917 | Msa0562660:CDS | 35.0% | |
| !! | GAAAAAGGTTGGTTTAGAAG+AGG | - | chr4_1:62649925-62649944 | Msa0562660:CDS | 35.0% |
| TCATGTTTATGAGAGACTAC+AGG | - | chr4_1:62649955-62649974 | Msa0562660:CDS | 35.0% | |
| TGTATCAGCTCATTGAGAAA+AGG | - | chr4_1:62650010-62650029 | Msa0562660:five_prime_UTR | 35.0% | |
| GTATCAGCTCATTGAGAAAA+GGG | - | chr4_1:62650011-62650030 | Msa0562660:five_prime_UTR | 35.0% | |
| TATCAGCTCATTGAGAAAAG+GGG | - | chr4_1:62650012-62650031 | Msa0562660:five_prime_UTR | 35.0% | |
| TCATTGAGAAAAGGGGATAA+AGG | - | chr4_1:62650019-62650038 | Msa0562660:five_prime_UTR | 35.0% | |
| CATTGAGAAAAGGGGATAAA+GGG | - | chr4_1:62650020-62650039 | Msa0562660:five_prime_UTR | 35.0% | |
| TACAACATCTACGTGATTTG+AGG | - | chr4_1:62650065-62650084 | Msa0562660:five_prime_UTR | 35.0% | |
| ! | AAACAGAGCATCATCAACCA+TGG | - | chr4_1:62646759-62646778 | Msa0562660:CDS | 40.0% |
| ! | GTTGGTGTTTCTGTGTAACA+TGG | + | chr4_1:62646803-62646822 | None:intergenic | 40.0% |
| TCACACACAAGATCTCTACA+AGG | + | chr4_1:62647003-62647022 | None:intergenic | 40.0% | |
| TGAATCAGATGACATGTGTG+AGG | - | chr4_1:62647080-62647099 | Msa0562660:CDS | 40.0% | |
| !! | GATTAATGGTGCTGATGGAA+AGG | - | chr4_1:62647191-62647210 | Msa0562660:CDS | 40.0% |
| GGGAATTGAGAAAGTTGAAG+AGG | - | chr4_1:62647212-62647231 | Msa0562660:CDS | 40.0% | |
| TGTGCTTGTTCTGTTTGTGA+TGG | - | chr4_1:62647528-62647547 | Msa0562660:CDS | 40.0% | |
| ! | TTCTGTTTGTGATGGTGTCA+AGG | - | chr4_1:62647536-62647555 | Msa0562660:CDS | 40.0% |
| ! | TGATGGTGTCAAGGAAACTA+TGG | - | chr4_1:62647545-62647564 | Msa0562660:CDS | 40.0% |
| TCTCAAAGTTTCCTCTTCCA+AGG | + | chr4_1:62647619-62647638 | None:intergenic | 40.0% | |
| ATTGAATGTTCCAAAGGCTC+AGG | - | chr4_1:62647638-62647657 | Msa0562660:CDS | 40.0% | |
| GTGGATTCAACCAATTCAAC+AGG | + | chr4_1:62647771-62647790 | None:intergenic | 40.0% | |
| GAATCCACTGCCATAGAAAA+TGG | - | chr4_1:62647783-62647802 | Msa0562660:CDS | 40.0% | |
| AAGTAGATGTGATAAGGTGG+TGG | - | chr4_1:62647812-62647831 | Msa0562660:CDS | 40.0% | |
| AAATGTGTCCAAGGTCAATG+AGG | - | chr4_1:62647968-62647987 | Msa0562660:CDS | 40.0% | |
| TGATTCAACCTCATTGACCT+TGG | + | chr4_1:62647979-62647998 | None:intergenic | 40.0% | |
| CTAGGTTCATATGCTTCTCT+AGG | - | chr4_1:62648113-62648132 | Msa0562660:intron | 40.0% | |
| GATGATGCATCACAAACTCA+AGG | - | chr4_1:62648248-62648267 | Msa0562660:intron | 40.0% | |
| TCAAGGCCAGGATATTCTTT+CGG | - | chr4_1:62648340-62648359 | Msa0562660:CDS | 40.0% | |
| ATTCATCTACTAGCTCAGTC+AGG | - | chr4_1:62648387-62648406 | Msa0562660:CDS | 40.0% | |
| AGGCTTACCACTATCATGTT+GGG | + | chr4_1:62648420-62648439 | None:intergenic | 40.0% | |
| ! | ATGCATGGATTTGAGGTAGA+AGG | + | chr4_1:62648457-62648476 | None:intergenic | 40.0% |
| ! | TGGTTCTATGCATGGATTTG+AGG | + | chr4_1:62648464-62648483 | None:intergenic | 40.0% |
| GTCGCAGACCTTTATAATGT+TGG | - | chr4_1:62648505-62648524 | Msa0562660:intron | 40.0% | |
| GGAGCTTAATGAGAATGAAG+AGG | - | chr4_1:62648775-62648794 | Msa0562660:CDS | 40.0% | |
| GTCAGGAACAGAAGATTCAT+TGG | - | chr4_1:62648877-62648896 | Msa0562660:CDS | 40.0% | |
| GGAACAGAAGATTCATTGGA+TGG | - | chr4_1:62648881-62648900 | Msa0562660:CDS | 40.0% | |
| !!! | TGCGGATTTTAACTTCTCGA+AGG | + | chr4_1:62648942-62648961 | None:intergenic | 40.0% |
| GATTGCCAAGGTCATGTAAA+TGG | - | chr4_1:62649719-62649738 | Msa0562660:CDS | 40.0% | |
| !! | GGTAATGGAAAGCATCATCA+AGG | - | chr4_1:62649752-62649771 | Msa0562660:CDS | 40.0% |
| !! | ATGGAAAGCATCATCAAGGA+AGG | - | chr4_1:62649756-62649775 | Msa0562660:CDS | 40.0% |
| GAAGAAGATGTAGAGTTGAG+TGG | - | chr4_1:62649836-62649855 | Msa0562660:CDS | 40.0% | |
| !! | AAAGGTTGGTTTAGAAGAGG+AGG | - | chr4_1:62649928-62649947 | Msa0562660:CDS | 40.0% |
| TCTACGTGATTTGAGGAATG+TGG | - | chr4_1:62650072-62650091 | Msa0562660:five_prime_UTR | 40.0% | |
| ATTCTTGCACACCACATGCA+GGG | + | chr4_1:62646946-62646965 | None:intergenic | 45.0% | |
| AATTCTTGCACACCACATGC+AGG | + | chr4_1:62646947-62646966 | None:intergenic | 45.0% | |
| ! | GGTTTGAGATGTTCTTGCTG+TGG | - | chr4_1:62647234-62647253 | Msa0562660:CDS | 45.0% |
| AGGGAATGAAACCTTGGAAG+AGG | - | chr4_1:62647605-62647624 | Msa0562660:CDS | 45.0% | |
| TGATCATCATCCTGAGCCTT+TGG | + | chr4_1:62647651-62647670 | None:intergenic | 45.0% | |
| !! | TGTGATAAGGTGGTGGATGA+AGG | - | chr4_1:62647819-62647838 | Msa0562660:CDS | 45.0% |
| !! | GTGATAAGGTGGTGGATGAA+GGG | - | chr4_1:62647820-62647839 | Msa0562660:CDS | 45.0% |
| TGCATCACAAACTCAAGGTG+AGG | - | chr4_1:62648253-62648272 | Msa0562660:intron | 45.0% | |
| ATCACAAACTCAAGGTGAGG+AGG | - | chr4_1:62648256-62648275 | Msa0562660:intron | 45.0% | |
| AATGGATGAGTATCAAGGCC+AGG | - | chr4_1:62648328-62648347 | Msa0562660:CDS | 45.0% | |
| GAGGCTTACCACTATCATGT+TGG | + | chr4_1:62648421-62648440 | None:intergenic | 45.0% | |
| AACTGCAAATGTGGTCGCAT+CGG | + | chr4_1:62648540-62648559 | None:intergenic | 45.0% | |
| AGGCATCACAACTGCAAATG+TGG | + | chr4_1:62648549-62648568 | None:intergenic | 45.0% | |
| !! | GGCATATGGTTACTTGCTGT+TGG | + | chr4_1:62648746-62648765 | None:intergenic | 45.0% |
| ! | GCTCCAAAGATGATGGCATA+TGG | + | chr4_1:62648760-62648779 | None:intergenic | 45.0% |
| ! | TGAAGACTCTCTGGAGAAGT+CGG | + | chr4_1:62648818-62648837 | None:intergenic | 45.0% |
| !! | TGCAGTTGATGAAGACTCTC+TGG | + | chr4_1:62648827-62648846 | None:intergenic | 45.0% |
| TTTCTTGAGAGGAAAGGGTC+AGG | - | chr4_1:62648860-62648879 | Msa0562660:CDS | 45.0% | |
| TGTAGCAGCCAACCAAACAA+TGG | - | chr4_1:62649030-62649049 | Msa0562660:CDS | 45.0% | |
| AGAGAAAGCAGCAATGCAGA+TGG | - | chr4_1:62649075-62649094 | Msa0562660:CDS | 45.0% | |
| ACAATCCGAGTACGATCAAG+AGG | - | chr4_1:62649129-62649148 | Msa0562660:CDS | 45.0% | |
| TCCTTCTTGTAGCAATGCTG+AGG | - | chr4_1:62649309-62649328 | Msa0562660:CDS | 45.0% | |
| TCCTCAGCATTGCTACAAGA+AGG | + | chr4_1:62649313-62649332 | None:intergenic | 45.0% | |
| AGCAATGCTGAGGATAGTGA+TGG | - | chr4_1:62649319-62649338 | Msa0562660:CDS | 45.0% | |
| GCAATGCTGAGGATAGTGAT+GGG | - | chr4_1:62649320-62649339 | Msa0562660:CDS | 45.0% | |
| CTTTGTGAAGAGAACGGGAA+TGG | - | chr4_1:62649665-62649684 | Msa0562660:CDS | 45.0% | |
| GACGATCATGATGATTGCCA+AGG | - | chr4_1:62649707-62649726 | Msa0562660:CDS | 45.0% | |
| TCATCAAGGAAGGAAAGCCT+TGG | - | chr4_1:62649766-62649785 | Msa0562660:CDS | 45.0% | |
| TGGTAGAAGCCTCTTTGCTT+TGG | + | chr4_1:62649795-62649814 | None:intergenic | 45.0% | |
| TTATGAGAGACTACAGGTGC+TGG | - | chr4_1:62649961-62649980 | Msa0562660:exon | 45.0% | |
| GAACTCAGAGTCAGGAACAT+AGG | - | chr4_1:62650094-62650113 | Msa0562660:five_prime_UTR | 45.0% | |
| CAGGAACATAGGAGATCTTG+CGG | - | chr4_1:62650105-62650124 | Msa0562660:five_prime_UTR | 45.0% | |
| !! | TGCAAACTTGTTGGCAGCCA+TGG | + | chr4_1:62646779-62646798 | None:intergenic | 50.0% |
| ! | ACCACATGCAGGGTCTTTTC+AGG | + | chr4_1:62646936-62646955 | None:intergenic | 50.0% |
| !! | AGGTGGTGGATGAAGGGTTT+AGG | - | chr4_1:62647826-62647845 | Msa0562660:CDS | 50.0% |
| !! | GGTGGTGGATGAAGGGTTTA+GGG | - | chr4_1:62647827-62647846 | Msa0562660:CDS | 50.0% |
| CATGGCCTCTTGATCGTACT+CGG | + | chr4_1:62649137-62649156 | None:intergenic | 50.0% | |
| !! | CTGCATCTACAGGAGTGTTC+TGG | + | chr4_1:62649499-62649518 | None:intergenic | 50.0% |
| ! | CCTCTTTGCTTTGGTAGCCA+AGG | + | chr4_1:62649786-62649805 | None:intergenic | 50.0% |
| CCTTGGCTACCAAAGCAAAG+AGG | - | chr4_1:62649783-62649802 | Msa0562660:CDS | 50.0% | |
| !! | GGTTGGTTTAGAAGAGGAGG+TGG | - | chr4_1:62649931-62649950 | Msa0562660:CDS | 50.0% |
| GGAATGTGGAACTCAGAGTC+AGG | - | chr4_1:62650086-62650105 | Msa0562660:five_prime_UTR | 50.0% | |
| GCCTGAAAAGACCCTGCATG+TGG | - | chr4_1:62646932-62646951 | Msa0562660:CDS | 55.0% | |
| TCTGGAGAAGTCGGTGTGTC+GGG | + | chr4_1:62648809-62648828 | None:intergenic | 55.0% | |
| ! | CTCTGGAGAAGTCGGTGTGT+CGG | + | chr4_1:62648810-62648829 | None:intergenic | 55.0% |
| !! | TGAGAGACTACAGGTGCTGG+AGG | - | chr4_1:62649964-62649983 | Msa0562660:exon | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 62646622 | 62650132 | 62646622 | ID=Msa0562660;Name=Msa0562660 |
| chr4_1 | mRNA | 62646622 | 62650132 | 62646622 | ID=Msa0562660-mRNA-1;Parent=Msa0562660;Name=Msa0562660-mRNA-1;_AED=0.10;_eAED=0.10;_QI=156|0.66|0.5|1|1|1|4|0|948 |
| chr4_1 | exon | 62646622 | 62647261 | 62646622 | ID=Msa0562660-mRNA-1:exon:19815;Parent=Msa0562660-mRNA-1 |
| chr4_1 | exon | 62647413 | 62648073 | 62647413 | ID=Msa0562660-mRNA-1:exon:19814;Parent=Msa0562660-mRNA-1 |
| chr4_1 | exon | 62648323 | 62648511 | 62648323 | ID=Msa0562660-mRNA-1:exon:19813;Parent=Msa0562660-mRNA-1 |
| chr4_1 | exon | 62648620 | 62650132 | 62648620 | ID=Msa0562660-mRNA-1:exon:19812;Parent=Msa0562660-mRNA-1 |
| chr4_1 | five_prime_UTR | 62649977 | 62650132 | 62649977 | ID=Msa0562660-mRNA-1:five_prime_utr;Parent=Msa0562660-mRNA-1 |
| chr4_1 | CDS | 62648620 | 62649976 | 62648620 | ID=Msa0562660-mRNA-1:cds;Parent=Msa0562660-mRNA-1 |
| chr4_1 | CDS | 62648323 | 62648511 | 62648323 | ID=Msa0562660-mRNA-1:cds;Parent=Msa0562660-mRNA-1 |
| chr4_1 | CDS | 62647413 | 62648073 | 62647413 | ID=Msa0562660-mRNA-1:cds;Parent=Msa0562660-mRNA-1 |
| chr4_1 | CDS | 62646622 | 62647261 | 62646622 | ID=Msa0562660-mRNA-1:cds;Parent=Msa0562660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
