Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801670 | XP_003612558.1 | 96.721 | 366 | 12 | 0 | 1 | 366 | 1 | 366 | 0.0 | 735 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801670 | sp|Q8VWF1|SH3P2_ARATH | 47.872 | 376 | 176 | 6 | 1 | 366 | 1 | 366 | 7.29e-112 | 333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801670 | G7K5G6 | 96.721 | 366 | 12 | 0 | 1 | 366 | 1 | 366 | 0.0 | 735 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028620 | Msa0801670 | 0.829564 | 4.798390e-55 | -8.615850e-47 |
| Msa0032080 | Msa0801670 | 0.808683 | 2.745891e-50 | -8.615850e-47 |
| Msa0613340 | Msa0801670 | 0.804096 | 2.545650e-49 | -8.615850e-47 |
| Msa0733010 | Msa0801670 | 0.806542 | 7.822267e-50 | -8.615850e-47 |
| Msa0760180 | Msa0801670 | 0.813163 | 2.942153e-51 | -8.615850e-47 |
| Msa0760250 | Msa0801670 | 0.815588 | 8.560955e-52 | -8.615850e-47 |
| Msa0801670 | Msa0840060 | 0.827905 | 1.208429e-54 | -8.615850e-47 |
| Msa0801670 | Msa0898750 | 0.802840 | 4.634944e-49 | -8.615850e-47 |
| Msa0801670 | Msa0899970 | 0.843837 | 1.096015e-58 | -8.615850e-47 |
| Msa0801670 | Msa0928130 | 0.800939 | 1.139129e-48 | -8.615850e-47 |
| Msa0801670 | Msa0964310 | 0.822854 | 1.895954e-53 | -8.615850e-47 |
| Msa0801670 | Msa0965080 | 0.835629 | 1.500921e-56 | -8.615850e-47 |
| Msa0801670 | Msa0965290 | 0.843994 | 9.947264e-59 | -8.615850e-47 |
| Msa0801670 | Msa0999680 | 0.840049 | 1.098367e-57 | -8.615850e-47 |
| Msa0801670 | Msa1001180 | 0.810243 | 1.269916e-50 | -8.615850e-47 |
| Msa0801670 | Msa1019000 | 0.807651 | 4.554390e-50 | -8.615850e-47 |
| Msa0801670 | Msa1019150 | 0.809052 | 2.289787e-50 | -8.615850e-47 |
| Msa0801670 | Msa1063400 | 0.823798 | 1.140702e-53 | -8.615850e-47 |
| Msa0801670 | Msa1075650 | 0.815531 | 8.814604e-52 | -8.615850e-47 |
| Msa0801670 | Msa1147740 | 0.811859 | 5.669225e-51 | -8.615850e-47 |
| Msa0801670 | Msa1155170 | -0.807692 | 4.465491e-50 | -8.615850e-47 |
| Msa0801670 | Msa1232700 | 0.803454 | 3.458759e-49 | -8.615850e-47 |
| Msa0801670 | Msa1305530 | 0.807489 | 4.930843e-50 | -8.615850e-47 |
| Msa0801670 | Msa1307560 | 0.814368 | 1.596203e-51 | -8.615850e-47 |
| Msa0801670 | Msa1313280 | 0.808546 | 2.937692e-50 | -8.615850e-47 |
| Msa0801670 | Msa1325410 | -0.824445 | 8.042156e-54 | -8.615850e-47 |
| Msa0124320 | Msa0801670 | 0.827014 | 1.976323e-54 | -8.615850e-47 |
| Msa0172080 | Msa0801670 | 0.812427 | 4.262136e-51 | -8.615850e-47 |
| Msa0218370 | Msa0801670 | 0.817201 | 3.728315e-52 | -8.615850e-47 |
| Msa0219590 | Msa0801670 | 0.816312 | 5.901330e-52 | -8.615850e-47 |
| Msa0232020 | Msa0801670 | 0.810421 | 1.162453e-50 | -8.615850e-47 |
| Msa0367870 | Msa0801670 | 0.801615 | 8.284033e-49 | -8.615850e-47 |
| Msa0411390 | Msa0801670 | 0.810192 | 1.302489e-50 | -8.615850e-47 |
| Msa0435770 | Msa0801670 | 0.803685 | 3.098246e-49 | -8.615850e-47 |
| Msa0455760 | Msa0801670 | 0.824063 | 9.886800e-54 | -8.615850e-47 |
| Msa0241140 | Msa0801670 | 0.800690 | 1.280588e-48 | -8.615850e-47 |
| Msa0260780 | Msa0801670 | 0.803061 | 4.171349e-49 | -8.615850e-47 |
| Msa0363790 | Msa0801670 | 0.831309 | 1.795564e-55 | -8.615850e-47 |
| Msa0486690 | Msa0801670 | 0.818268 | 2.141932e-52 | -8.615850e-47 |
| Msa0578920 | Msa0801670 | 0.801409 | 9.128275e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801670 | MtrunA17_Chr5g0408971 | 96.721 | 366 | 12 | 0 | 1 | 366 | 1 | 366 | 0.0 | 735 |
| Msa0801670 | MtrunA17_Chr3g0145091 | 49.340 | 379 | 169 | 7 | 1 | 366 | 1 | 369 | 2.61e-111 | 329 |
| Msa0801670 | MtrunA17_Chr4g0035851 | 47.644 | 382 | 172 | 8 | 1 | 366 | 1 | 370 | 9.61e-104 | 310 |
| Msa0801670 | MtrunA17_Chr8g0380121 | 38.420 | 367 | 199 | 5 | 1 | 364 | 1 | 343 | 4.58e-87 | 266 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801670 | AT4G34660.1 | 47.872 | 376 | 176 | 6 | 1 | 366 | 1 | 366 | 7.41e-113 | 333 |
| Msa0801670 | AT4G34660.2 | 46.011 | 376 | 160 | 7 | 1 | 366 | 1 | 343 | 8.31e-104 | 310 |
| Msa0801670 | AT4G34660.3 | 44.536 | 366 | 152 | 2 | 1 | 366 | 1 | 315 | 9.12e-101 | 301 |
| Msa0801670 | AT1G31440.1 | 51.505 | 299 | 133 | 3 | 1 | 289 | 1 | 297 | 8.64e-97 | 295 |
| Msa0801670 | AT1G31440.1 | 57.009 | 107 | 42 | 1 | 264 | 366 | 327 | 433 | 3.96e-33 | 128 |
| Msa0801670 | AT4G18060.1 | 40.771 | 363 | 191 | 5 | 1 | 360 | 1 | 342 | 5.18e-95 | 287 |
| Msa0801670 | AT4G39020.1 | 45.055 | 91 | 49 | 1 | 276 | 366 | 78 | 167 | 1.09e-18 | 82.8 |
Find 104 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCAATCACATGATATTA+TGG | 0.226560 | 5_3:+15786865 | None:intergenic |
| GGATTAACTTTCTCATTTGC+AGG | 0.288088 | 5_3:+15788018 | None:intergenic |
| GAGACTTTGCTTGGGATCTT+AGG | 0.291927 | 5_3:-15790090 | Msa0801670:CDS |
| GGTTGATTATGTTCCTCTTT+TGG | 0.303218 | 5_3:+15788039 | None:intergenic |
| CGGTAACTCATACGATATAT+TGG | 0.313275 | 5_3:-15790124 | Msa0801670:CDS |
| GCTAAGGACTGTTGTAAGTA+TGG | 0.317953 | 5_3:-15790204 | Msa0801670:CDS |
| ACAGACCATTCTATATAATA+TGG | 0.328812 | 5_3:+15786684 | None:intergenic |
| GCATAACTTTGATGTTATTC+CGG | 0.330937 | 5_3:+15786961 | None:intergenic |
| ACAAATAACAGGAGCTCCTT+TGG | 0.378574 | 5_3:-15789502 | Msa0801670:CDS |
| TTTGATTTGCTTAAGCCCTT+AGG | 0.379562 | 5_3:-15786745 | Msa0801670:three_prime_UTR |
| GCTTGGGATCTTAGGTGATC+AGG | 0.383065 | 5_3:-15790082 | Msa0801670:intron |
| AAGTTTCCAACGGAAGAAAA+AGG | 0.385249 | 5_3:+15791693 | None:intergenic |
| TATTCTCATAATCACGGATT+AGG | 0.386587 | 5_3:-15786900 | Msa0801670:three_prime_UTR |
| TGTTTATAACGAATGCCATT+TGG | 0.388959 | 5_3:+15787997 | None:intergenic |
| TAAGCCCTTAGGGTTATCTA+AGG | 0.400401 | 5_3:-15786734 | Msa0801670:three_prime_UTR |
| CCACTGCGGGCACAAATAAC+AGG | 0.404350 | 5_3:-15789513 | Msa0801670:CDS |
| GCAAGTGTTTCTCTTCAATT+CGG | 0.409931 | 5_3:-15790144 | Msa0801670:CDS |
| GATCACTACCTGTTGTTGTT+TGG | 0.414946 | 5_3:+15791453 | None:intergenic |
| GGAGAATTCAATGGCAATGC+TGG | 0.418558 | 5_3:-15787039 | Msa0801670:CDS |
| TTGATTTGCTTAAGCCCTTA+GGG | 0.420745 | 5_3:-15786744 | Msa0801670:three_prime_UTR |
| GTCAAGCTCGTGTCCGTGTC+TGG | 0.421033 | 5_3:-15791820 | Msa0801670:five_prime_UTR |
| TATAAACATAACACCCAAAT+GGG | 0.436203 | 5_3:-15787982 | Msa0801670:CDS |
| CGATTATGTTGTAGTCCGTC+AGG | 0.438244 | 5_3:-15787396 | Msa0801670:intron |
| TTCTGCATTCTGAAGCCTCA+TGG | 0.443561 | 5_3:+15789281 | None:intergenic |
| TTATAAACATAACACCCAAA+TGG | 0.448386 | 5_3:-15787983 | Msa0801670:CDS |
| CATATCGTTCGGGGCGTTGA+AGG | 0.452090 | 5_3:-15790363 | Msa0801670:CDS |
| TTCTGTTAGTTCCAAGCAGA+TGG | 0.454303 | 5_3:-15790334 | Msa0801670:CDS |
| CCTTCAGCTTGAGCATCAAA+TGG | 0.458512 | 5_3:+15787440 | None:intergenic |
| AATGAGAAAGTTAATCCAAA+TGG | 0.467279 | 5_3:-15788012 | Msa0801670:CDS |
| ATCATTTCCACTGCCAAAAG+AGG | 0.468115 | 5_3:-15788052 | Msa0801670:CDS |
| CAGTCTATACTTAGACAGTT+GGG | 0.468435 | 5_3:-15790583 | Msa0801670:CDS |
| ATACCATTGTAGAAAGGCTC+TGG | 0.470481 | 5_3:+15789160 | None:intergenic |
| AGTTCCAAGCAGATGGAGAT+AGG | 0.472353 | 5_3:-15790327 | Msa0801670:intron |
| GGAAGCAAGCTAGTAGATTG+AGG | 0.473119 | 5_3:-15791486 | Msa0801670:CDS |
| AATGAAAGGGAGACTTTGCT+TGG | 0.475575 | 5_3:-15790099 | Msa0801670:CDS |
| ACAAGTTGCCAAACAACAAC+AGG | 0.480217 | 5_3:-15791461 | Msa0801670:intron |
| AATGTCCATATTATATAGAA+TGG | 0.488035 | 5_3:-15786689 | Msa0801670:three_prime_UTR |
| TATTCCGGTATCTTGTTCGC+TGG | 0.489472 | 5_3:+15786976 | None:intergenic |
| GCAGTCTATACTTAGACAGT+TGG | 0.490454 | 5_3:-15790584 | Msa0801670:intron |
| CTCTCTCTCTGGAAAGTCCC+AGG | 0.491436 | 5_3:-15791664 | Msa0801670:intron |
| CCATTTGATGCTCAAGCTGA+AGG | 0.493578 | 5_3:-15787440 | Msa0801670:CDS |
| AAACTTCGTCAAGAAGTAGA+AGG | 0.493785 | 5_3:-15789447 | Msa0801670:CDS |
| GAGGCGTCGATCAAAGTTGA+GGG | 0.496376 | 5_3:-15789328 | Msa0801670:CDS |
| AATTTCCAGGTTGCTGCCAA+TGG | 0.498806 | 5_3:-15787072 | Msa0801670:intron |
| GTCACCTATCTCCATCTGCT+TGG | 0.502296 | 5_3:+15790323 | None:intergenic |
| GACGAAGTTTGTCGTAGTTG+TGG | 0.502788 | 5_3:+15789460 | None:intergenic |
| TGAGCGGTTCATTGCTAAGT+TGG | 0.503839 | 5_3:+15790560 | None:intergenic |
| ACGATATATTGGAAAATGAA+AGG | 0.504543 | 5_3:-15790113 | Msa0801670:CDS |
| ACGAAGTTTGTCGTAGTTGT+GGG | 0.505034 | 5_3:+15789461 | None:intergenic |
| TTAGCTATACCATTGTAGAA+AGG | 0.507899 | 5_3:+15789154 | None:intergenic |
| ATGAAAGGGAGACTTTGCTT+GGG | 0.515856 | 5_3:-15790098 | Msa0801670:CDS |
| CGATATATTGGAAAATGAAA+GGG | 0.517703 | 5_3:-15790112 | Msa0801670:CDS |
| AAATCTGCCTTGGTGGCACT+TGG | 0.518307 | 5_3:-15789240 | Msa0801670:CDS |
| TTGAAGAGAAACACTTGCAA+GGG | 0.519874 | 5_3:+15790149 | None:intergenic |
| GAAGCAAGCTAGTAGATTGA+GGG | 0.520089 | 5_3:-15791485 | Msa0801670:CDS |
| TCCAGGTTGCTGCCAATGGA+TGG | 0.529779 | 5_3:-15787068 | Msa0801670:intron |
| ACTTAGCAATGAACCGCTCA+TGG | 0.537092 | 5_3:-15790557 | Msa0801670:CDS |
| CCTAATCAAAAGACCAATGT+TGG | 0.539985 | 5_3:+15786939 | None:intergenic |
| CTCTGCTTATGTACAGAGAC+AGG | 0.541764 | 5_3:-15787007 | Msa0801670:CDS |
| TGCTGCTATGTCGTCAGTTG+AGG | 0.543649 | 5_3:-15789205 | Msa0801670:CDS |
| CTAAGGACTGTTGTAAGTAT+GGG | 0.544371 | 5_3:-15790203 | Msa0801670:CDS |
| GTATACTTCAGTGAGGAAGT+TGG | 0.546550 | 5_3:-15790226 | Msa0801670:intron |
| GAAAGAGCATAAATCTGCCT+TGG | 0.555036 | 5_3:-15789250 | Msa0801670:CDS |
| TCGTCAAGAAGTAGAAGGCC+AGG | 0.555758 | 5_3:-15789442 | Msa0801670:intron |
| AAGTTCCTTAGATAACCCTA+AGG | 0.557549 | 5_3:+15786729 | None:intergenic |
| ATAGATCTCTGAGCCACTGC+GGG | 0.558173 | 5_3:-15789526 | Msa0801670:intron |
| TTCAGTGAGGAAGTTGGCTA+AGG | 0.558875 | 5_3:-15790220 | Msa0801670:intron |
| TTCTCCTTCAGACCATCCAT+TGG | 0.561878 | 5_3:+15787056 | None:intergenic |
| CATTTGATGCTCAAGCTGAA+GGG | 0.565005 | 5_3:-15787439 | Msa0801670:CDS |
| TGTCGTAGTTGTGGGTGAGA+TGG | 0.569642 | 5_3:+15789469 | None:intergenic |
| TGAGGCGTCGATCAAAGTTG+AGG | 0.570936 | 5_3:-15789329 | Msa0801670:CDS |
| CTAGAATAACAAGGGCATGC+CGG | 0.575931 | 5_3:+15788292 | None:intergenic |
| CATCAAAGTTATGCCAACAT+TGG | 0.578617 | 5_3:-15786952 | Msa0801670:three_prime_UTR |
| TTTCAGCGGCATATCGTTCG+GGG | 0.580469 | 5_3:-15790372 | Msa0801670:CDS |
| TGGTCTGAAGGAGAATTCAA+TGG | 0.582228 | 5_3:-15787048 | Msa0801670:CDS |
| AATTCAATGGCAATGCTGGA+TGG | 0.583292 | 5_3:-15787035 | Msa0801670:CDS |
| ATTTGATGCTCAAGCTGAAG+GGG | 0.584498 | 5_3:-15787438 | Msa0801670:CDS |
| CACTTCTACAAAGACTGCTA+AGG | 0.584795 | 5_3:-15790488 | Msa0801670:intron |
| AGTACCAGCGAACAAGATAC+CGG | 0.589399 | 5_3:-15786980 | Msa0801670:CDS |
| ACTGTATATTCTCATAATCA+CGG | 0.593578 | 5_3:-15786906 | Msa0801670:three_prime_UTR |
| AGAGCATAAATCTGCCTTGG+TGG | 0.594915 | 5_3:-15789247 | Msa0801670:CDS |
| GCTGCCAATGGATGGTCTGA+AGG | 0.596789 | 5_3:-15787060 | Msa0801670:CDS |
| TCTAGATAAACTACATGCTG+AGG | 0.597051 | 5_3:-15788274 | Msa0801670:intron |
| ATTGAAGAGAAACACTTGCA+AGG | 0.606149 | 5_3:+15790148 | None:intergenic |
| TCTCCAGAGCCTTTCTACAA+TGG | 0.606321 | 5_3:-15789163 | Msa0801670:intron |
| TTCTCTACCAAGTGCCACCA+AGG | 0.607684 | 5_3:+15789233 | None:intergenic |
| CCTGTTATTTGTGCCCGCAG+TGG | 0.612434 | 5_3:+15789513 | None:intergenic |
| TGTAATTCTAAATGAAAACA+TGG | 0.617627 | 5_3:-15786664 | Msa0801670:three_prime_UTR |
| GAAAGTGAAAACTACAGTGT+TGG | 0.620300 | 5_3:+15791743 | None:intergenic |
| AGATGGCGTGCATCTTCCAA+AGG | 0.624501 | 5_3:+15789486 | None:intergenic |
| CTGTCTCTGTACATAAGCAG+AGG | 0.628802 | 5_3:+15787008 | None:intergenic |
| AGTTCCTTAGATAACCCTAA+GGG | 0.632998 | 5_3:+15786730 | None:intergenic |
| AGAGAGAGAGAAGTTTCCAA+CGG | 0.636158 | 5_3:+15791683 | None:intergenic |
| TTTGAGAGTAGCACCAGACA+CGG | 0.640529 | 5_3:+15791807 | None:intergenic |
| TCAGATTCATCAGCCATGAG+CGG | 0.654677 | 5_3:+15790544 | None:intergenic |
| TGAAGAGAAACACTTGCAAG+GGG | 0.657994 | 5_3:+15790150 | None:intergenic |
| GTAGTTTATCTAGAATAACA+AGG | 0.660690 | 5_3:+15788283 | None:intergenic |
| TGTCTCTGTACATAAGCAGA+GGG | 0.668894 | 5_3:+15787009 | None:intergenic |
| GGAAATGATGTAGAGTCTTG+TGG | 0.677018 | 5_3:+15788066 | None:intergenic |
| TAGTTTATCTAGAATAACAA+GGG | 0.682515 | 5_3:+15788284 | None:intergenic |
| TTTCTGCAGAGAGTTCCATG+AGG | 0.703430 | 5_3:-15789296 | Msa0801670:CDS |
| TATAGATCTCTGAGCCACTG+CGG | 0.729508 | 5_3:-15789527 | Msa0801670:intron |
| GGGACTGAGAATGACAACCA+AGG | 0.745093 | 5_3:-15790183 | Msa0801670:CDS |
| GAAGAGAAACACTTGCAAGG+GGG | 0.746582 | 5_3:+15790151 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATTAACAAAGTAAAA+TGG | + | chr5_3:15789576-15789595 | None:intergenic | 10.0% |
| !!! | AAATTCATAATTTTTTAATG+AGG | - | chr5_3:15789964-15789983 | Msa0801670:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTGTTTG+GGG | + | chr5_3:15790076-15790095 | None:intergenic | 10.0% |
| !!! | ATTTTATTGCTTATATAAAT+TGG | + | chr5_3:15790743-15790762 | None:intergenic | 10.0% |
| !! | AATATCATTATTAATATTTG+CGG | - | chr5_3:15791271-15791290 | Msa0801670:intron | 10.0% |
| !!! | AGAAAAAGGTATAATAATAA+TGG | + | chr5_3:15786741-15786760 | None:intergenic | 15.0% |
| !! | TAAAACTGTAAAAAGAAAAA+TGG | - | chr5_3:15786927-15786946 | Msa0801670:three_prime_UTR | 15.0% |
| !!! | TGATTCTATAAAATTGATTT+AGG | + | chr5_3:15787637-15787656 | None:intergenic | 15.0% |
| !!! | TGATAACATCATATATTTTA+CGG | + | chr5_3:15788468-15788487 | None:intergenic | 15.0% |
| !!! | TATTGACTTTGATAAATTAA+GGG | - | chr5_3:15788715-15788734 | Msa0801670:intron | 15.0% |
| !! | TATCTTATTAAATGTTTGTT+TGG | - | chr5_3:15789987-15790006 | Msa0801670:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTGTTTGG+GGG | + | chr5_3:15790075-15790094 | None:intergenic | 15.0% |
| !! | ATATAATATATCAAACATAC+AGG | + | chr5_3:15790716-15790735 | None:intergenic | 15.0% |
| !!! | ACAATTGATTTTGATATGTT+TGG | - | chr5_3:15787462-15787481 | Msa0801670:intron | 20.0% |
| !! | CTTAATAACTAACTGATAAA+TGG | + | chr5_3:15788001-15788020 | None:intergenic | 20.0% |
| !! | ATAAAACATCAATCAATTAC+TGG | + | chr5_3:15788196-15788215 | None:intergenic | 20.0% |
| !!! | CTATTGACTTTGATAAATTA+AGG | - | chr5_3:15788714-15788733 | Msa0801670:intron | 20.0% |
| !!! | ATATACTGTTGATTTTGTAA+AGG | - | chr5_3:15788796-15788815 | Msa0801670:intron | 20.0% |
| !!! | TATACTGTTGATTTTGTAAA+GGG | - | chr5_3:15788797-15788816 | Msa0801670:intron | 20.0% |
| !! | TTGAAGATGTAAATATTTGT+TGG | - | chr5_3:15789666-15789685 | Msa0801670:intron | 20.0% |
| !!! | TAGTTTATCTAGAATAACAA+GGG | + | chr5_3:15790164-15790183 | None:intergenic | 20.0% |
| !! | TTCCAATTTGAAAGAATTAT+TGG | + | chr5_3:15790212-15790231 | None:intergenic | 20.0% |
| !! | AGATCAACATTAAAAAGAAA+TGG | + | chr5_3:15790669-15790688 | None:intergenic | 20.0% |
| !! | TATATAAAATGAACTTCTCA+TGG | + | chr5_3:15790828-15790847 | None:intergenic | 20.0% |
| !! | TCATAAAATAAGACAAATCT+TGG | - | chr5_3:15790857-15790876 | Msa0801670:intron | 20.0% |
| !!! | TTGAACTTCTTAAGTAATTT+TGG | - | chr5_3:15791105-15791124 | Msa0801670:intron | 20.0% |
| !!! | TTGCATTTTTATTTTCCTTT+TGG | - | chr5_3:15791344-15791363 | Msa0801670:intron | 20.0% |
| !! | AATGTCCATATTATATAGAA+TGG | - | chr5_3:15791756-15791775 | Msa0801670:five_prime_UTR | 20.0% |
| !! | TGTAATTCTAAATGAAAACA+TGG | - | chr5_3:15791781-15791800 | Msa0801670:five_prime_UTR | 20.0% |
| ! | TTAAACTAAGAAGAATACCT+GGG | + | chr5_3:15786801-15786820 | None:intergenic | 25.0% |
| ! | ATTAAACTAAGAAGAATACC+TGG | + | chr5_3:15786802-15786821 | None:intergenic | 25.0% |
| ! | AAAAGTAAGAGAACAAATGA+AGG | + | chr5_3:15786829-15786848 | None:intergenic | 25.0% |
| !!! | ACAGTAACTTTGTTTTTGTT+TGG | + | chr5_3:15786899-15786918 | None:intergenic | 25.0% |
| ! | AAAGAAAAATGGATGCTATA+AGG | - | chr5_3:15786938-15786957 | Msa0801670:three_prime_UTR | 25.0% |
| !! | ATTTTGCAGTAGTACTATTT+AGG | - | chr5_3:15787036-15787055 | Msa0801670:CDS | 25.0% |
| ! | AAACAAGCTTATTGTATGTT+TGG | - | chr5_3:15787109-15787128 | Msa0801670:intron | 25.0% |
| !!! | AGAAATGATTTTGACATGTT+TGG | - | chr5_3:15787177-15787196 | Msa0801670:intron | 25.0% |
| !!! | AATATAATTGATTTTGCCTC+TGG | - | chr5_3:15787209-15787228 | Msa0801670:intron | 25.0% |
| ! | ATGTGAAAGTCATTTATGTT+CGG | + | chr5_3:15787334-15787353 | None:intergenic | 25.0% |
| ! | TTACTTCATGATTGAACTTA+TGG | - | chr5_3:15787714-15787733 | Msa0801670:intron | 25.0% |
| ! | GCATAAACAAAACTAATGAT+AGG | + | chr5_3:15788166-15788185 | None:intergenic | 25.0% |
| !!! | TTAGTTTTGTTTATGCTTCA+AGG | - | chr5_3:15788170-15788189 | Msa0801670:intron | 25.0% |
| !!! | TTATTTTGTATACTTCAGTG+AGG | - | chr5_3:15788212-15788231 | Msa0801670:intron | 25.0% |
| ! | ACGATATATTGGAAAATGAA+AGG | - | chr5_3:15788332-15788351 | Msa0801670:intron | 25.0% |
| ! | CGATATATTGGAAAATGAAA+GGG | - | chr5_3:15788333-15788352 | Msa0801670:intron | 25.0% |
| ! | ATGTGAATGTTATTGTTGAT+TGG | + | chr5_3:15788625-15788644 | None:intergenic | 25.0% |
| ! | CTTATTTCATATCAAGCAAA+AGG | + | chr5_3:15788675-15788694 | None:intergenic | 25.0% |
| !! | ATGCAAATGACTTTAAAAGA+CGG | + | chr5_3:15788833-15788852 | None:intergenic | 25.0% |
| !! | GTAGTTTATCTAGAATAACA+AGG | + | chr5_3:15790165-15790184 | None:intergenic | 25.0% |
| ! | CAATTTGAAAGAATTATTGG+TGG | + | chr5_3:15790209-15790228 | None:intergenic | 25.0% |
| ! | CACCAATAATTCTTTCAAAT+TGG | - | chr5_3:15790207-15790226 | Msa0801670:CDS | 25.0% |
| ! | AATGAGAAAGTTAATCCAAA+TGG | - | chr5_3:15790433-15790452 | Msa0801670:intron | 25.0% |
| ! | TTATAAACATAACACCCAAA+TGG | - | chr5_3:15790462-15790481 | Msa0801670:intron | 25.0% |
| ! | TATAAACATAACACCCAAAT+GGG | - | chr5_3:15790463-15790482 | Msa0801670:intron | 25.0% |
| ! | ATATGGTTGTAATGTAATGT+AGG | + | chr5_3:15790549-15790568 | None:intergenic | 25.0% |
| ! | CAAAGCTAAATCATTTGAAT+AGG | + | chr5_3:15790602-15790621 | None:intergenic | 25.0% |
| !! | CTATTCAAATGATTTAGCTT+TGG | - | chr5_3:15790600-15790619 | Msa0801670:intron | 25.0% |
| ! | ATGTAGATAAAATATTGCAC+TGG | + | chr5_3:15790937-15790956 | None:intergenic | 25.0% |
| ! | AAATCAACAGTAACTCTATT+TGG | + | chr5_3:15791183-15791202 | None:intergenic | 25.0% |
| ! | TTATTAATATTTGCGGAAGT+TGG | - | chr5_3:15791278-15791297 | Msa0801670:intron | 25.0% |
| !!! | CATTTTTATTTTCCTTTTGG+TGG | - | chr5_3:15791347-15791366 | Msa0801670:intron | 25.0% |
| ! | ACTGTATATTCTCATAATCA+CGG | - | chr5_3:15791539-15791558 | Msa0801670:intron | 25.0% |
| ! | ATTGCAATCACATGATATTA+TGG | + | chr5_3:15791583-15791602 | None:intergenic | 25.0% |
| !!! | CATGTGATTGCAATTTTTTT+TGG | - | chr5_3:15791589-15791608 | Msa0801670:intron | 25.0% |
| !!! | TGATTGCAATTTTTTTTGGA+TGG | - | chr5_3:15791593-15791612 | Msa0801670:intron | 25.0% |
| ! | ACAGACCATTCTATATAATA+TGG | + | chr5_3:15791764-15791783 | None:intergenic | 25.0% |
| ! | ATTATACCTTTTTCTTCCGT+TGG | - | chr5_3:15786746-15786765 | Msa0801670:three_prime_UTR | 30.0% |
| TGATCAGAAAAAGATTGAGT+TGG | + | chr5_3:15786861-15786880 | None:intergenic | 30.0% | |
| !! | TTTTTGTTTGGAGTAGAGAA+AGG | + | chr5_3:15786887-15786906 | None:intergenic | 30.0% |
| !!! | CTAGAGTTGATTTTTAGCTT+TGG | - | chr5_3:15787273-15787292 | Msa0801670:intron | 30.0% |
| ! | GTGATGACCAAAATTGATTT+CGG | + | chr5_3:15787372-15787391 | None:intergenic | 30.0% |
| AAAAACACTAAGCAAGTGTT+CGG | + | chr5_3:15787402-15787421 | None:intergenic | 30.0% | |
| !!! | AACACTTGCTTAGTGTTTTT+TGG | - | chr5_3:15787402-15787421 | Msa0801670:CDS | 30.0% |
| AGGCTAAAAATCAATTCTAG+AGG | + | chr5_3:15787540-15787559 | None:intergenic | 30.0% | |
| !! | TAAGTTTAGAGAGCTTTGTT+TGG | - | chr5_3:15788017-15788036 | Msa0801670:CDS | 30.0% |
| CAAAACTAATGATAGGCAAA+AGG | + | chr5_3:15788159-15788178 | None:intergenic | 30.0% | |
| ! | CTATCTTGTGGCTATAATTT+TGG | - | chr5_3:15788541-15788560 | Msa0801670:intron | 30.0% |
| ! | CTTCTTTTTCCAGACAAAAA+TGG | - | chr5_3:15788869-15788888 | Msa0801670:intron | 30.0% |
| GTATTAATTTACTGCGACAA+TGG | - | chr5_3:15789025-15789044 | Msa0801670:intron | 30.0% | |
| ATCTTAGATATCTTCTCATC+AGG | - | chr5_3:15789081-15789100 | Msa0801670:intron | 30.0% | |
| TTAGCTATACCATTGTAGAA+AGG | + | chr5_3:15789294-15789313 | None:intergenic | 30.0% | |
| !! | TTTGTTTTCTTGTTTGTCAC+TGG | - | chr5_3:15789698-15789717 | Msa0801670:intron | 30.0% |
| TCTCTTCTTGAATCTTCATT+AGG | + | chr5_3:15789735-15789754 | None:intergenic | 30.0% | |
| TACTTGAAATGATAGACTGT+AGG | - | chr5_3:15789868-15789887 | Msa0801670:intron | 30.0% | |
| ! | TGATCAATTTTATGTAGCCA+TGG | - | chr5_3:15789918-15789937 | Msa0801670:intron | 30.0% |
| TGAAAAATATTGTGAGACCA+TGG | + | chr5_3:15789938-15789957 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTGTTTGGGGGA+GGG | + | chr5_3:15790071-15790090 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTTGTTTGGGGG+AGG | + | chr5_3:15790072-15790091 | None:intergenic | 30.0% |
| GTACAATAGATACAAGAACA+AGG | + | chr5_3:15790244-15790263 | None:intergenic | 30.0% | |
| CTTGTATCTATTGTACATGT+TGG | - | chr5_3:15790248-15790267 | Msa0801670:intron | 30.0% | |
| TGTTTATAACGAATGCCATT+TGG | + | chr5_3:15790451-15790470 | None:intergenic | 30.0% | |
| ! | AAAAAAGTATGTGCCCATTT+GGG | + | chr5_3:15790479-15790498 | None:intergenic | 30.0% |
| ATCTTCAAAGAAATACCTGA+CGG | + | chr5_3:15791067-15791086 | None:intergenic | 30.0% | |
| !!! | TTCTTTGAAGATTTTCGAGT+CGG | - | chr5_3:15791075-15791094 | Msa0801670:intron | 30.0% |
| GCATAACTTTGATGTTATTC+CGG | + | chr5_3:15791487-15791506 | None:intergenic | 30.0% | |
| TATTCTCATAATCACGGATT+AGG | - | chr5_3:15791545-15791564 | Msa0801670:intron | 30.0% | |
| !! | AAGGAACTTAGTTTTTGAGA+TGG | - | chr5_3:15791730-15791749 | Msa0801670:five_prime_UTR | 30.0% |
| GAAAGTGAAAACTACAGTGT+TGG | + | chr5_3:15786705-15786724 | None:intergenic | 35.0% | |
| AAGTTTCCAACGGAAGAAAA+AGG | + | chr5_3:15786755-15786774 | None:intergenic | 35.0% | |
| ! | CAGGTAGTGATCATTTTACA+TGG | - | chr5_3:15787003-15787022 | Msa0801670:CDS | 35.0% |
| !!! | GGTTCCACTTTTTTTTGAAG+AGG | - | chr5_3:15787130-15787149 | Msa0801670:intron | 35.0% |
| CTTGCCTCTTCAAAAAAAAG+TGG | + | chr5_3:15787137-15787156 | None:intergenic | 35.0% | |
| ! | TCATGTGAAAGTGAGTTGAA+TGG | + | chr5_3:15787305-15787324 | None:intergenic | 35.0% |
| ! | CTTGTAGCCGAAATCAATTT+TGG | - | chr5_3:15787362-15787381 | Msa0801670:intron | 35.0% |
| !!! | AGTGTTTTTTGGTGCCATTT+TGG | - | chr5_3:15787413-15787432 | Msa0801670:CDS | 35.0% |
| ! | CCAATTTTGTCTCTCCAAAA+TGG | + | chr5_3:15787430-15787449 | None:intergenic | 35.0% |
| !! | CCATTTTGGAGAGACAAAAT+TGG | - | chr5_3:15787427-15787446 | Msa0801670:CDS | 35.0% |
| TGGAGAGACAAAATTGGTTA+TGG | - | chr5_3:15787433-15787452 | Msa0801670:CDS | 35.0% | |
| ! | TGAGTTGAACAATAAAGTCG+AGG | + | chr5_3:15787560-15787579 | None:intergenic | 35.0% |
| ! | TGGTTCTGCGTTGATAAAAA+TGG | + | chr5_3:15787673-15787692 | None:intergenic | 35.0% |
| CATGATTGAACTTATGGTGT+CGG | - | chr5_3:15787720-15787739 | Msa0801670:intron | 35.0% | |
| GTGAACAATTCACAAGTCTA+AGG | + | chr5_3:15787754-15787773 | None:intergenic | 35.0% | |
| CAGTCTATACTTAGACAGTT+GGG | - | chr5_3:15787862-15787881 | Msa0801670:intron | 35.0% | |
| AAATGCTGTAAACGTCACAT+TGG | + | chr5_3:15788055-15788074 | None:intergenic | 35.0% | |
| CTAAGGACTGTTGTAAGTAT+GGG | - | chr5_3:15788242-15788261 | Msa0801670:intron | 35.0% | |
| TTGAAGAGAAACACTTGCAA+GGG | + | chr5_3:15788299-15788318 | None:intergenic | 35.0% | |
| ATTGAAGAGAAACACTTGCA+AGG | + | chr5_3:15788300-15788319 | None:intergenic | 35.0% | |
| GCAAGTGTTTCTCTTCAATT+CGG | - | chr5_3:15788301-15788320 | Msa0801670:CDS | 35.0% | |
| CGGTAACTCATACGATATAT+TGG | - | chr5_3:15788321-15788340 | Msa0801670:intron | 35.0% | |
| ! | TAGGTGATCAGGTAATCTTT+TGG | - | chr5_3:15788374-15788393 | Msa0801670:intron | 35.0% |
| ! | AGGTGATCAGGTAATCTTTT+GGG | - | chr5_3:15788375-15788394 | Msa0801670:intron | 35.0% |
| TTGTGCCTAATCTGATTTAC+TGG | - | chr5_3:15788518-15788537 | Msa0801670:intron | 35.0% | |
| GATAGCCAGTAAATCAGATT+AGG | + | chr5_3:15788526-15788545 | None:intergenic | 35.0% | |
| TCAATAGTTCCAGAGAACTA+GGG | + | chr5_3:15788701-15788720 | None:intergenic | 35.0% | |
| !! | CACTTGTTAGTGCTACTTAA+TGG | - | chr5_3:15788745-15788764 | Msa0801670:intron | 35.0% |
| !! | TGTTAGTGCTACTTAATGGA+AGG | - | chr5_3:15788749-15788768 | Msa0801670:intron | 35.0% |
| ! | TAATGGAAGGCATAGTTCTT+CGG | - | chr5_3:15788762-15788781 | Msa0801670:intron | 35.0% |
| !!! | TTAGAAGCACCATTTTTGTC+TGG | + | chr5_3:15788881-15788900 | None:intergenic | 35.0% |
| GGTGCTTCTAATTATGCTTT+AGG | - | chr5_3:15788890-15788909 | Msa0801670:intron | 35.0% | |
| AAACTTCGTCAAGAAGTAGA+AGG | - | chr5_3:15788998-15789017 | Msa0801670:intron | 35.0% | |
| TGTCGCAGTAAATTAATACC+TGG | + | chr5_3:15789024-15789043 | None:intergenic | 35.0% | |
| TGAACCAAGATTAACCTCAT+AGG | + | chr5_3:15789404-15789423 | None:intergenic | 35.0% | |
| !!! | TGAGTGGAGTTTTTTACCTT+TGG | - | chr5_3:15789430-15789449 | Msa0801670:intron | 35.0% |
| AAGTCAAATCAGCAACCAAT+GGG | + | chr5_3:15789546-15789565 | None:intergenic | 35.0% | |
| AAAGTCAAATCAGCAACCAA+TGG | + | chr5_3:15789547-15789566 | None:intergenic | 35.0% | |
| AAATCTTCACGCTAAATGCA+GGG | - | chr5_3:15789839-15789858 | Msa0801670:intron | 35.0% | |
| TCTAGATAAACTACATGCTG+AGG | - | chr5_3:15790171-15790190 | Msa0801670:CDS | 35.0% | |
| TTGTAACCTGTACCTTTCAT+CGG | - | chr5_3:15790316-15790335 | Msa0801670:intron | 35.0% | |
| ! | GGTTGATTATGTTCCTCTTT+TGG | + | chr5_3:15790409-15790428 | None:intergenic | 35.0% |
| GGATTAACTTTCTCATTTGC+AGG | + | chr5_3:15790430-15790449 | None:intergenic | 35.0% | |
| ! | CAAAAAAGTATGTGCCCATT+TGG | + | chr5_3:15790480-15790499 | None:intergenic | 35.0% |
| ! | GACAAATCTTGGTGCAAAAA+AGG | - | chr5_3:15790868-15790887 | Msa0801670:intron | 35.0% |
| AAATGGATGTATGACCTACA+AGG | + | chr5_3:15790991-15791010 | None:intergenic | 35.0% | |
| !!! | AAGATTTTCGAGTCGGTATA+TGG | - | chr5_3:15791082-15791101 | Msa0801670:intron | 35.0% |
| TCAACAGTAACTCTATTTGG+TGG | + | chr5_3:15791180-15791199 | None:intergenic | 35.0% | |
| CATCAAAGTTATGCCAACAT+TGG | - | chr5_3:15791493-15791512 | Msa0801670:CDS | 35.0% | |
| CCTAATCAAAAGACCAATGT+TGG | + | chr5_3:15791509-15791528 | None:intergenic | 35.0% | |
| !!! | CCAACATTGGTCTTTTGATT+AGG | - | chr5_3:15791506-15791525 | Msa0801670:exon | 35.0% |
| !!! | ATTGGTCTTTTGATTAGGTG+TGG | - | chr5_3:15791511-15791530 | Msa0801670:exon | 35.0% |
| !! | TTTGATTTGCTTAAGCCCTT+AGG | - | chr5_3:15791700-15791719 | Msa0801670:five_prime_UTR | 35.0% |
| !! | TTGATTTGCTTAAGCCCTTA+GGG | - | chr5_3:15791701-15791720 | Msa0801670:five_prime_UTR | 35.0% |
| AGTTCCTTAGATAACCCTAA+GGG | + | chr5_3:15791718-15791737 | None:intergenic | 35.0% | |
| AAGTTCCTTAGATAACCCTA+AGG | + | chr5_3:15791719-15791738 | None:intergenic | 35.0% | |
| AGAGAGAGAGAAGTTTCCAA+CGG | + | chr5_3:15786765-15786784 | None:intergenic | 40.0% | |
| GAAGCAAGCTAGTAGATTGA+GGG | - | chr5_3:15786960-15786979 | Msa0801670:exon | 40.0% | |
| ACAAGTTGCCAAACAACAAC+AGG | - | chr5_3:15786984-15787003 | Msa0801670:CDS | 40.0% | |
| ! | GATCACTACCTGTTGTTGTT+TGG | + | chr5_3:15786995-15787014 | None:intergenic | 40.0% |
| AGAGGCAAGATTGATCTTAG+AGG | - | chr5_3:15787148-15787167 | Msa0801670:intron | 40.0% | |
| GCAGTCTATACTTAGACAGT+TGG | - | chr5_3:15787861-15787880 | Msa0801670:intron | 40.0% | |
| CACTTCTACAAAGACTGCTA+AGG | - | chr5_3:15787957-15787976 | Msa0801670:intron | 40.0% | |
| ! | GACGTTTACAGCATTTTCAG+CGG | - | chr5_3:15788059-15788078 | Msa0801670:CDS | 40.0% |
| ! | ATTTTCAGCGGCATATCGTT+CGG | - | chr5_3:15788071-15788090 | Msa0801670:CDS | 40.0% |
| TTCTGTTAGTTCCAAGCAGA+TGG | - | chr5_3:15788111-15788130 | Msa0801670:intron | 40.0% | |
| GTATACTTCAGTGAGGAAGT+TGG | - | chr5_3:15788219-15788238 | Msa0801670:intron | 40.0% | |
| GCTAAGGACTGTTGTAAGTA+TGG | - | chr5_3:15788241-15788260 | Msa0801670:intron | 40.0% | |
| TGAAGAGAAACACTTGCAAG+GGG | + | chr5_3:15788298-15788317 | None:intergenic | 40.0% | |
| AATGAAAGGGAGACTTTGCT+TGG | - | chr5_3:15788346-15788365 | Msa0801670:intron | 40.0% | |
| ATGAAAGGGAGACTTTGCTT+GGG | - | chr5_3:15788347-15788366 | Msa0801670:intron | 40.0% | |
| ! | GGTGATCAGGTAATCTTTTG+GGG | - | chr5_3:15788376-15788395 | Msa0801670:intron | 40.0% |
| TTCTTCGATACTCTTCAGTG+TGG | - | chr5_3:15788402-15788421 | Msa0801670:intron | 40.0% | |
| ! | CTGATTTACTGGCTATCTTG+TGG | - | chr5_3:15788529-15788548 | Msa0801670:intron | 40.0% |
| ! | AATAAGAAGCCCTAGTTCTC+TGG | - | chr5_3:15788689-15788708 | Msa0801670:intron | 40.0% |
| GTCAATAGTTCCAGAGAACT+AGG | + | chr5_3:15788702-15788721 | None:intergenic | 40.0% | |
| ACAAATAACAGGAGCTCCTT+TGG | - | chr5_3:15788943-15788962 | Msa0801670:intron | 40.0% | |
| ACGAAGTTTGTCGTAGTTGT+GGG | + | chr5_3:15788987-15789006 | None:intergenic | 40.0% | |
| ! | GAAAGAGCATAAATCTGCCT+TGG | - | chr5_3:15789195-15789214 | Msa0801670:CDS | 40.0% |
| ATACCATTGTAGAAAGGCTC+TGG | + | chr5_3:15789288-15789307 | None:intergenic | 40.0% | |
| TCTTGGTTCAACTGTTTGAG+TGG | - | chr5_3:15789414-15789433 | Msa0801670:intron | 40.0% | |
| CCTATCGAGTTACACCTATT+GGG | + | chr5_3:15789466-15789485 | None:intergenic | 40.0% | |
| CCAATAGGTGTAACTCGATA+GGG | - | chr5_3:15789464-15789483 | Msa0801670:CDS | 40.0% | |
| AGTCAAATCAGCAACCAATG+GGG | + | chr5_3:15789545-15789564 | None:intergenic | 40.0% | |
| ! | TTTCTTGTTTGTCACTGGCA+AGG | - | chr5_3:15789703-15789722 | Msa0801670:intron | 40.0% |
| CACAGTCAATCTGTCCATTA+GGG | - | chr5_3:15789791-15789810 | Msa0801670:intron | 40.0% | |
| GAAATCTTCACGCTAAATGC+AGG | - | chr5_3:15789838-15789857 | Msa0801670:intron | 40.0% | |
| !! | CTATTGTACATGTTGGCTTC+TGG | - | chr5_3:15790255-15790274 | Msa0801670:intron | 40.0% |
| TACCTTTCATCGGATGTTCT+TGG | - | chr5_3:15790326-15790345 | Msa0801670:intron | 40.0% | |
| GGAAATGATGTAGAGTCTTG+TGG | + | chr5_3:15790382-15790401 | None:intergenic | 40.0% | |
| ATCATTTCCACTGCCAAAAG+AGG | - | chr5_3:15790393-15790412 | Msa0801670:intron | 40.0% | |
| ! | TTATGTTCCTCTTTTGGCAG+TGG | + | chr5_3:15790403-15790422 | None:intergenic | 40.0% |
| !!! | GGGCACATACTTTTTTGCAA+AGG | - | chr5_3:15790483-15790502 | Msa0801670:intron | 40.0% |
| AACAGTCAACTGCAGGAATA+TGG | + | chr5_3:15790566-15790585 | None:intergenic | 40.0% | |
| ! | ATCCAGCTACCTCTTTTACA+TGG | - | chr5_3:15790775-15790794 | Msa0801670:intron | 40.0% |
| ! | TCCAGCTACCTCTTTTACAT+GGG | - | chr5_3:15790776-15790795 | Msa0801670:intron | 40.0% |
| !! | CTCATCTTGATTTGCCTTGT+AGG | - | chr5_3:15790974-15790993 | Msa0801670:intron | 40.0% |
| CATTTGATGCTCAAGCTGAA+GGG | - | chr5_3:15791006-15791025 | Msa0801670:intron | 40.0% | |
| ATTTGATGCTCAAGCTGAAG+GGG | - | chr5_3:15791007-15791026 | Msa0801670:intron | 40.0% | |
| CTGGAAATTCAACCACCAAA+AGG | + | chr5_3:15791362-15791381 | None:intergenic | 40.0% | |
| !! | CTTTTGGTGGTTGAATTTCC+AGG | - | chr5_3:15791360-15791379 | Msa0801670:intron | 40.0% |
| TGGTCTGAAGGAGAATTCAA+TGG | - | chr5_3:15791397-15791416 | Msa0801670:intron | 40.0% | |
| AATTCAATGGCAATGCTGGA+TGG | - | chr5_3:15791410-15791429 | Msa0801670:intron | 40.0% | |
| TGTCTCTGTACATAAGCAGA+GGG | + | chr5_3:15791439-15791458 | None:intergenic | 40.0% | |
| TAAGCCCTTAGGGTTATCTA+AGG | - | chr5_3:15791711-15791730 | Msa0801670:five_prime_UTR | 40.0% | |
| TTTGAGAGTAGCACCAGACA+CGG | + | chr5_3:15786641-15786660 | None:intergenic | 45.0% | |
| AACTTCTCTCTCTCTCTCTC+TGG | - | chr5_3:15786770-15786789 | Msa0801670:three_prime_UTR | 45.0% | |
| GGAAGCAAGCTAGTAGATTG+AGG | - | chr5_3:15786959-15786978 | Msa0801670:exon | 45.0% | |
| TAAGCAAGTGTTCGGTTCTG+CGG | + | chr5_3:15787394-15787413 | None:intergenic | 45.0% | |
| AACAAGCCTTAGCGTGTGTT+TGG | + | chr5_3:15787693-15787712 | None:intergenic | 45.0% | |
| TGAGCGGTTCATTGCTAAGT+TGG | + | chr5_3:15787888-15787907 | None:intergenic | 45.0% | |
| ACTTAGCAATGAACCGCTCA+TGG | - | chr5_3:15787888-15787907 | Msa0801670:intron | 45.0% | |
| TCAGATTCATCAGCCATGAG+CGG | + | chr5_3:15787904-15787923 | None:intergenic | 45.0% | |
| ! | TTTTCAGCGGCATATCGTTC+GGG | - | chr5_3:15788072-15788091 | Msa0801670:CDS | 45.0% |
| AGTTCCAAGCAGATGGAGAT+AGG | - | chr5_3:15788118-15788137 | Msa0801670:intron | 45.0% | |
| TTCAGTGAGGAAGTTGGCTA+AGG | - | chr5_3:15788225-15788244 | Msa0801670:intron | 45.0% | |
| GAAGAGAAACACTTGCAAGG+GGG | + | chr5_3:15788297-15788316 | None:intergenic | 45.0% | |
| GAGACTTTGCTTGGGATCTT+AGG | - | chr5_3:15788355-15788374 | Msa0801670:intron | 45.0% | |
| TATAGATCTCTGAGCCACTG+CGG | - | chr5_3:15788918-15788937 | Msa0801670:intron | 45.0% | |
| GACGAAGTTTGTCGTAGTTG+TGG | + | chr5_3:15788988-15789007 | None:intergenic | 45.0% | |
| ! | ATCAGGCTGCTGAAGTTTTG+AGG | - | chr5_3:15789098-15789117 | Msa0801670:intron | 45.0% |
| TTTCTGCAGAGAGTTCCATG+AGG | - | chr5_3:15789149-15789168 | Msa0801670:intron | 45.0% | |
| !! | TTCTGCATTCTGAAGCCTCA+TGG | + | chr5_3:15789167-15789186 | None:intergenic | 45.0% |
| AGAGCATAAATCTGCCTTGG+TGG | - | chr5_3:15789198-15789217 | Msa0801670:CDS | 45.0% | |
| TCTCCAGAGCCTTTCTACAA+TGG | - | chr5_3:15789282-15789301 | Msa0801670:CDS | 45.0% | |
| CTCGCCTATGAGGTTAATCT+TGG | - | chr5_3:15789397-15789416 | Msa0801670:intron | 45.0% | |
| ATCGAGTTACACCTATTGGG+AGG | + | chr5_3:15789463-15789482 | None:intergenic | 45.0% | |
| CCCAATAGGTGTAACTCGAT+AGG | - | chr5_3:15789463-15789482 | Msa0801670:CDS | 45.0% | |
| CCCTATCGAGTTACACCTAT+TGG | + | chr5_3:15789467-15789486 | None:intergenic | 45.0% | |
| AATAACTTCCCCCTGAAAGG+AGG | + | chr5_3:15789507-15789526 | None:intergenic | 45.0% | |
| GGAAATAACTTCCCCCTGAA+AGG | + | chr5_3:15789510-15789529 | None:intergenic | 45.0% | |
| ! | CCTAATGGACAGATTGACTG+TGG | + | chr5_3:15789793-15789812 | None:intergenic | 45.0% |
| CCACAGTCAATCTGTCCATT+AGG | - | chr5_3:15789790-15789809 | Msa0801670:intron | 45.0% | |
| TTCACGCTAAATGCAGGGTT+CGG | - | chr5_3:15789844-15789863 | Msa0801670:intron | 45.0% | |
| !!! | TTTTTTTGTTTGGGGGAGGG+AGG | + | chr5_3:15790068-15790087 | None:intergenic | 45.0% |
| AAAGGGGGGAGAAAAAGGAA+AGG | + | chr5_3:15790105-15790124 | None:intergenic | 45.0% | |
| ! | TTTCCTTTTTCTCCCCCCTT+TGG | - | chr5_3:15790104-15790123 | Msa0801670:CDS | 45.0% |
| ! | ATGCTGAGAGAGCTTTTCAC+CGG | - | chr5_3:15790134-15790153 | Msa0801670:CDS | 45.0% |
| ! | CTAGAATAACAAGGGCATGC+CGG | + | chr5_3:15790156-15790175 | None:intergenic | 45.0% |
| ! | GAACATCCGATGAAAGGTAC+AGG | + | chr5_3:15790325-15790344 | None:intergenic | 45.0% |
| CTCCAAGAACATCCGATGAA+AGG | + | chr5_3:15790331-15790350 | None:intergenic | 45.0% | |
| CTTGATCAACAGTCAACTGC+AGG | + | chr5_3:15790573-15790592 | None:intergenic | 45.0% | |
| TCCCATGTAAAAGAGGTAGC+TGG | + | chr5_3:15790780-15790799 | None:intergenic | 45.0% | |
| TTCTGCGTCCCATGTAAAAG+AGG | + | chr5_3:15790787-15790806 | None:intergenic | 45.0% | |
| CCTTCAGCTTGAGCATCAAA+TGG | + | chr5_3:15791008-15791027 | None:intergenic | 45.0% | |
| CCATTTGATGCTCAAGCTGA+AGG | - | chr5_3:15791005-15791024 | Msa0801670:intron | 45.0% | |
| CGATTATGTTGTAGTCCGTC+AGG | - | chr5_3:15791049-15791068 | Msa0801670:intron | 45.0% | |
| AATTTCCAGGTTGCTGCCAA+TGG | - | chr5_3:15791373-15791392 | Msa0801670:intron | 45.0% | |
| TTCTCCTTCAGACCATCCAT+TGG | + | chr5_3:15791392-15791411 | None:intergenic | 45.0% | |
| GGAGAATTCAATGGCAATGC+TGG | - | chr5_3:15791406-15791425 | Msa0801670:intron | 45.0% | |
| CTGTCTCTGTACATAAGCAG+AGG | + | chr5_3:15791440-15791459 | None:intergenic | 45.0% | |
| CTCTGCTTATGTACAGAGAC+AGG | - | chr5_3:15791438-15791457 | Msa0801670:intron | 45.0% | |
| AGTACCAGCGAACAAGATAC+CGG | - | chr5_3:15791465-15791484 | Msa0801670:CDS | 45.0% | |
| TATTCCGGTATCTTGTTCGC+TGG | + | chr5_3:15791472-15791491 | None:intergenic | 45.0% | |
| !!! | ATTTTTTTTTTTTTTTGTTT+GGG | + | chr5_3:15790077-15790096 | None:intergenic | 5.0% |
| !!! | AATTTTTTTTTTTTTTTGTT+TGG | + | chr5_3:15790078-15790097 | None:intergenic | 5.0% |
| CAAGTCAGAGTCACTTCCAG+AGG | + | chr5_3:15787228-15787247 | None:intergenic | 50.0% | |
| GCAGAACCAAACACACGCTA+AGG | - | chr5_3:15787684-15787703 | Msa0801670:intron | 50.0% | |
| TTTCAGCGGCATATCGTTCG+GGG | - | chr5_3:15788073-15788092 | Msa0801670:CDS | 50.0% | |
| GTCACCTATCTCCATCTGCT+TGG | + | chr5_3:15788125-15788144 | None:intergenic | 50.0% | |
| GGGACTGAGAATGACAACCA+AGG | - | chr5_3:15788262-15788281 | Msa0801670:intron | 50.0% | |
| CAAGGGGGTAAGTACTACCT+TGG | + | chr5_3:15788282-15788301 | None:intergenic | 50.0% | |
| GCTTGGGATCTTAGGTGATC+AGG | - | chr5_3:15788363-15788382 | Msa0801670:intron | 50.0% | |
| ATAGATCTCTGAGCCACTGC+GGG | - | chr5_3:15788919-15788938 | Msa0801670:intron | 50.0% | |
| AGATGGCGTGCATCTTCCAA+AGG | + | chr5_3:15788962-15788981 | None:intergenic | 50.0% | |
| TGTCGTAGTTGTGGGTGAGA+TGG | + | chr5_3:15788979-15788998 | None:intergenic | 50.0% | |
| TCGTCAAGAAGTAGAAGGCC+AGG | - | chr5_3:15789003-15789022 | Msa0801670:intron | 50.0% | |
| CTGCGACAATGGCATGCATA+TGG | - | chr5_3:15789036-15789055 | Msa0801670:intron | 50.0% | |
| CGACAATGGCATGCATATGG+TGG | - | chr5_3:15789039-15789058 | Msa0801670:intron | 50.0% | |
| !! | TGAGGCGTCGATCAAAGTTG+AGG | - | chr5_3:15789116-15789135 | Msa0801670:intron | 50.0% |
| !! | GAGGCGTCGATCAAAGTTGA+GGG | - | chr5_3:15789117-15789136 | Msa0801670:intron | 50.0% |
| ! | AAATCTGCCTTGGTGGCACT+TGG | - | chr5_3:15789205-15789224 | Msa0801670:CDS | 50.0% |
| TTCTCTACCAAGTGCCACCA+AGG | + | chr5_3:15789215-15789234 | None:intergenic | 50.0% | |
| TGCTGCTATGTCGTCAGTTG+AGG | - | chr5_3:15789240-15789259 | Msa0801670:CDS | 50.0% | |
| GAGTGTCAAAAGCTCTCGGT+CGG | + | chr5_3:15789380-15789399 | None:intergenic | 50.0% | |
| AGGCGAGTGTCAAAAGCTCT+CGG | + | chr5_3:15789384-15789403 | None:intergenic | 50.0% | |
| ! | GCTTTTGACACTCGCCTATG+AGG | - | chr5_3:15789387-15789406 | Msa0801670:intron | 50.0% |
| ATTGGGAGGCTGAGAACCAA+AGG | + | chr5_3:15789449-15789468 | None:intergenic | 50.0% | |
| ! | TTGGTTCTCAGCCTCCCAAT+AGG | - | chr5_3:15789449-15789468 | Msa0801670:CDS | 50.0% |
| ACCCAGATTCTCCTCCTTTC+AGG | - | chr5_3:15789493-15789512 | Msa0801670:CDS | 50.0% | |
| CCCTGAAAGGAGGAGAATCT+GGG | + | chr5_3:15789497-15789516 | None:intergenic | 50.0% | |
| CCCAGATTCTCCTCCTTTCA+GGG | - | chr5_3:15789494-15789513 | Msa0801670:CDS | 50.0% | |
| CCAGATTCTCCTCCTTTCAG+GGG | - | chr5_3:15789495-15789514 | Msa0801670:CDS | 50.0% | |
| CAGATTCTCCTCCTTTCAGG+GGG | - | chr5_3:15789496-15789515 | Msa0801670:CDS | 50.0% | |
| ACTCGCGTTCTACACCCTAA+TGG | + | chr5_3:15789808-15789827 | None:intergenic | 50.0% | |
| ! | CTCTCTCTCTGGAAAGTCCC+AGG | - | chr5_3:15786781-15786800 | Msa0801670:three_prime_UTR | 55.0% |
| !! | CATATCGTTCGGGGCGTTGA+AGG | - | chr5_3:15788082-15788101 | Msa0801670:CDS | 55.0% |
| ! | CCTGTTATTTGTGCCCGCAG+TGG | + | chr5_3:15788935-15788954 | None:intergenic | 55.0% |
| CCACTGCGGGCACAAATAAC+AGG | - | chr5_3:15788932-15788951 | Msa0801670:intron | 55.0% | |
| CCCCTGAAAGGAGGAGAATC+TGG | + | chr5_3:15789498-15789517 | None:intergenic | 55.0% | |
| ! | CCAATGGGGTGTTTGTCGAG+TGG | + | chr5_3:15789531-15789550 | None:intergenic | 55.0% |
| CCACTCGACAAACACCCCAT+TGG | - | chr5_3:15789528-15789547 | Msa0801670:intron | 55.0% | |
| CTGCCAAAGGGGGGAGAAAA+AGG | + | chr5_3:15790110-15790129 | None:intergenic | 55.0% | |
| ! | CTTTTTCTCCCCCCTTTGGC+AGG | - | chr5_3:15790108-15790127 | Msa0801670:CDS | 55.0% |
| TCAGCATCCACCTGCCAAAG+GGG | + | chr5_3:15790121-15790140 | None:intergenic | 55.0% | |
| CTCAGCATCCACCTGCCAAA+GGG | + | chr5_3:15790122-15790141 | None:intergenic | 55.0% | |
| TCTCAGCATCCACCTGCCAA+AGG | + | chr5_3:15790123-15790142 | None:intergenic | 55.0% | |
| TCCAGGTTGCTGCCAATGGA+TGG | - | chr5_3:15791377-15791396 | Msa0801670:intron | 55.0% | |
| ACCATCCATTGGCAGCAACC+TGG | + | chr5_3:15791381-15791400 | None:intergenic | 55.0% | |
| GCTGCCAATGGATGGTCTGA+AGG | - | chr5_3:15791385-15791404 | Msa0801670:intron | 55.0% | |
| GTCAAGCTCGTGTCCGTGTC+TGG | - | chr5_3:15786625-15786644 | Msa0801670:three_prime_UTR | 60.0% | |
| TTTCTCCCCCCTTTGGCAGG+TGG | - | chr5_3:15790111-15790130 | Msa0801670:CDS | 60.0% | |
| AGCATCCACCTGCCAAAGGG+GGG | + | chr5_3:15790119-15790138 | None:intergenic | 60.0% | |
| CAGCATCCACCTGCCAAAGG+GGG | + | chr5_3:15790120-15790139 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 15786624 | 15791843 | 15786624 | ID=Msa0801670;Name=Msa0801670 |
| chr5_3 | mRNA | 15786624 | 15791843 | 15786624 | ID=Msa0801670-mRNA-1;Parent=Msa0801670;Name=Msa0801670-mRNA-1;_AED=0.16;_eAED=0.16;_QI=213|1|1|1|0.9|0.81|11|351|366 |
| chr5_3 | exon | 15786624 | 15787085 | 15786624 | ID=Msa0801670-mRNA-1:exon:6597;Parent=Msa0801670-mRNA-1 |
| chr5_3 | exon | 15787397 | 15787471 | 15787397 | ID=Msa0801670-mRNA-1:exon:6596;Parent=Msa0801670-mRNA-1 |
| chr5_3 | exon | 15787963 | 15788112 | 15787963 | ID=Msa0801670-mRNA-1:exon:6595;Parent=Msa0801670-mRNA-1 |
| chr5_3 | exon | 15788275 | 15788337 | 15788275 | ID=Msa0801670-mRNA-1:exon:6594;Parent=Msa0801670-mRNA-1 |
| chr5_3 | exon | 15789164 | 15789364 | 15789164 | ID=Msa0801670-mRNA-1:exon:6593;Parent=Msa0801670-mRNA-1 |
| chr5_3 | exon | 15789443 | 15789544 | 15789443 | ID=Msa0801670-mRNA-1:exon:6592;Parent=Msa0801670-mRNA-1 |
| chr5_3 | exon | 15790083 | 15790237 | 15790083 | ID=Msa0801670-mRNA-1:exon:6591;Parent=Msa0801670-mRNA-1 |
| chr5_3 | exon | 15790328 | 15790397 | 15790328 | ID=Msa0801670-mRNA-1:exon:6590;Parent=Msa0801670-mRNA-1 |
| chr5_3 | exon | 15790489 | 15790602 | 15790489 | ID=Msa0801670-mRNA-1:exon:6589;Parent=Msa0801670-mRNA-1 |
| chr5_3 | exon | 15791462 | 15791555 | 15791462 | ID=Msa0801670-mRNA-1:exon:6588;Parent=Msa0801670-mRNA-1 |
| chr5_3 | exon | 15791665 | 15791843 | 15791665 | ID=Msa0801670-mRNA-1:exon:6587;Parent=Msa0801670-mRNA-1 |
| chr5_3 | five_prime_UTR | 15791665 | 15791843 | 15791665 | ID=Msa0801670-mRNA-1:five_prime_utr;Parent=Msa0801670-mRNA-1 |
| chr5_3 | five_prime_UTR | 15791522 | 15791555 | 15791522 | ID=Msa0801670-mRNA-1:five_prime_utr;Parent=Msa0801670-mRNA-1 |
| chr5_3 | CDS | 15791462 | 15791521 | 15791462 | ID=Msa0801670-mRNA-1:cds;Parent=Msa0801670-mRNA-1 |
| chr5_3 | CDS | 15790489 | 15790602 | 15790489 | ID=Msa0801670-mRNA-1:cds;Parent=Msa0801670-mRNA-1 |
| chr5_3 | CDS | 15790328 | 15790397 | 15790328 | ID=Msa0801670-mRNA-1:cds;Parent=Msa0801670-mRNA-1 |
| chr5_3 | CDS | 15790083 | 15790237 | 15790083 | ID=Msa0801670-mRNA-1:cds;Parent=Msa0801670-mRNA-1 |
| chr5_3 | CDS | 15789443 | 15789544 | 15789443 | ID=Msa0801670-mRNA-1:cds;Parent=Msa0801670-mRNA-1 |
| chr5_3 | CDS | 15789164 | 15789364 | 15789164 | ID=Msa0801670-mRNA-1:cds;Parent=Msa0801670-mRNA-1 |
| chr5_3 | CDS | 15788275 | 15788337 | 15788275 | ID=Msa0801670-mRNA-1:cds;Parent=Msa0801670-mRNA-1 |
| chr5_3 | CDS | 15787963 | 15788112 | 15787963 | ID=Msa0801670-mRNA-1:cds;Parent=Msa0801670-mRNA-1 |
| chr5_3 | CDS | 15787397 | 15787471 | 15787397 | ID=Msa0801670-mRNA-1:cds;Parent=Msa0801670-mRNA-1 |
| chr5_3 | CDS | 15786975 | 15787085 | 15786975 | ID=Msa0801670-mRNA-1:cds;Parent=Msa0801670-mRNA-1 |
| chr5_3 | three_prime_UTR | 15786624 | 15786974 | 15786624 | ID=Msa0801670-mRNA-1:three_prime_utr;Parent=Msa0801670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
