Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385590 | XP_003603813.1 | 99.184 | 490 | 4 | 0 | 1 | 490 | 1 | 490 | 0.0 | 1004 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385590 | sp|P93768|PSMD3_TOBAC | 85.947 | 491 | 65 | 2 | 1 | 490 | 1 | 488 | 0.0 | 827 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385590 | G7J5U6 | 99.184 | 490 | 4 | 0 | 1 | 490 | 1 | 490 | 0.0 | 1004 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051630 | Msa0385590 | 0.801074 | 1.068978e-48 | -8.615850e-47 |
| Msa0106620 | Msa0385590 | 0.802856 | 4.599898e-49 | -8.615850e-47 |
| Msa0115400 | Msa0385590 | 0.803055 | 4.184302e-49 | -8.615850e-47 |
| Msa0179190 | Msa0385590 | 0.814706 | 1.343827e-51 | -8.615850e-47 |
| Msa0189710 | Msa0385590 | 0.808209 | 3.466215e-50 | -8.615850e-47 |
| Msa0232020 | Msa0385590 | 0.812633 | 3.842920e-51 | -8.615850e-47 |
| Msa0232090 | Msa0385590 | 0.811270 | 7.612770e-51 | -8.615850e-47 |
| Msa0237210 | Msa0385590 | 0.806091 | 9.731427e-50 | -8.615850e-47 |
| Msa0385590 | Msa0389910 | 0.815624 | 8.402516e-52 | -8.615850e-47 |
| Msa0385590 | Msa0403640 | 0.808174 | 3.526261e-50 | -8.615850e-47 |
| Msa0385590 | Msa0435770 | 0.962325 | 9.634701e-121 | -8.615850e-47 |
| Msa0385590 | Msa0455760 | 0.814875 | 1.232942e-51 | -8.615850e-47 |
| Msa0385590 | Msa0562570 | 0.813268 | 2.789245e-51 | -8.615850e-47 |
| Msa0385590 | Msa0578920 | 0.816704 | 4.821774e-52 | -8.615850e-47 |
| Msa0385590 | Msa0583360 | -0.833027 | 6.748682e-56 | -8.615850e-47 |
| Msa0385590 | Msa0610880 | 0.802739 | 4.863319e-49 | -8.615850e-47 |
| Msa0385590 | Msa0673120 | 0.807541 | 4.806251e-50 | -8.615850e-47 |
| Msa0385590 | Msa0733010 | 0.817860 | 2.648892e-52 | -8.615850e-47 |
| Msa0385590 | Msa0881350 | 0.819225 | 1.298644e-52 | -8.615850e-47 |
| Msa0385590 | Msa0933760 | 0.805844 | 1.096894e-49 | -8.615850e-47 |
| Msa0385590 | Msa0954840 | 0.807222 | 5.617701e-50 | -8.615850e-47 |
| Msa0385590 | Msa0965290 | 0.801775 | 7.678129e-49 | -8.615850e-47 |
| Msa0385590 | Msa1034500 | 0.801424 | 9.063858e-49 | -8.615850e-47 |
| Msa0385590 | Msa1145810 | 0.803550 | 3.304656e-49 | -8.615850e-47 |
| Msa0385590 | Msa1155170 | -0.851079 | 1.120674e-60 | -8.615850e-47 |
| Msa0385590 | Msa1225860 | -0.841253 | 5.315411e-58 | -8.615850e-47 |
| Msa0385590 | Msa1325410 | -0.808158 | 3.552942e-50 | -8.615850e-47 |
| Msa0385590 | Msa1340200 | 0.812727 | 3.666168e-51 | -8.615850e-47 |
| Msa0385590 | Msa1345810 | 0.809508 | 1.827652e-50 | -8.615850e-47 |
| Msa0385590 | Msa1368360 | 0.816990 | 4.158125e-52 | -8.615850e-47 |
| Msa0310090 | Msa0385590 | 0.810364 | 1.196092e-50 | -8.615850e-47 |
| Msa0315690 | Msa0385590 | 0.813619 | 2.335083e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385590 | MtrunA17_Chr3g0143291 | 99.184 | 490 | 4 | 0 | 1 | 490 | 1 | 490 | 0.0 | 1004 |
| Msa0385590 | MtrunA17_Chr1g0157071 | 85.773 | 485 | 55 | 5 | 1 | 482 | 1 | 474 | 0.0 | 792 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385590 | AT1G20200.1 | 82.857 | 490 | 82 | 1 | 1 | 490 | 1 | 488 | 0.0 | 811 |
| Msa0385590 | AT1G75990.1 | 81.837 | 490 | 86 | 1 | 1 | 490 | 1 | 487 | 0.0 | 787 |
Find 129 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGGGATAATTGTGATTT+TGG | 0.152682 | 3_1:-89127014 | Msa0385590:three_prime_UTR |
| TTCTATGGTTTGTTTCTTTC+GGG | 0.158911 | 3_1:-89127030 | Msa0385590:three_prime_UTR |
| TTTGGTCTTCTTCACTTGTT+AGG | 0.185790 | 3_1:-89131729 | Msa0385590:five_prime_UTR |
| CTTCTATGGTTTGTTTCTTT+CGG | 0.208016 | 3_1:-89127031 | Msa0385590:three_prime_UTR |
| TGACTTGTTATTGAATATTA+TGG | 0.258695 | 3_1:+89126811 | None:intergenic |
| ATTCATGATGATGACTTCTA+TGG | 0.274474 | 3_1:-89127045 | Msa0385590:three_prime_UTR |
| TGGAGATCTGGCTGAAATTC+GGG | 0.287672 | 3_1:-89130014 | Msa0385590:CDS |
| GGCTGTCCGCATTGGAGATT+TGG | 0.288995 | 3_1:-89127741 | Msa0385590:CDS |
| TTGGAGATTTGGAGCTGTTT+AGG | 0.292663 | 3_1:-89127730 | Msa0385590:CDS |
| CTCGATCATGTTCTCACTCC+TGG | 0.302582 | 3_1:-89131358 | Msa0385590:CDS |
| TGAACGAAATTGAGCGAAAT+CGG | 0.305957 | 3_1:+89131674 | None:intergenic |
| TCATATAGCCATGAACTTAC+TGG | 0.313557 | 3_1:-89130034 | Msa0385590:CDS |
| GAGCTTTACGAGCAGCTTGC+AGG | 0.339070 | 3_1:+89129387 | None:intergenic |
| CTGGAGATCTGGCTGAAATT+CGG | 0.352735 | 3_1:-89130015 | Msa0385590:CDS |
| CCAGATCTCCAGTAAGTTCA+TGG | 0.361028 | 3_1:+89130026 | None:intergenic |
| CGAAAACCCCGAGCTGCAAC+TGG | 0.373967 | 3_1:+89129365 | None:intergenic |
| CTAATGGAAGTTCTTCATAA+TGG | 0.374767 | 3_1:+89127158 | None:intergenic |
| GAAAATTCGGACTATTCAAT+TGG | 0.381260 | 3_1:-89129435 | Msa0385590:CDS |
| TCAGCATCAGCAACAGGATT+TGG | 0.384636 | 3_1:+89127545 | None:intergenic |
| TCTTCTACCTCGGGAAAATT+CGG | 0.396222 | 3_1:-89129448 | Msa0385590:CDS |
| TGACCACGTTGCTTCTTGTT+TGG | 0.396407 | 3_1:-89131747 | Msa0385590:five_prime_UTR |
| TAAAGCTCCAGTTGCAGCTC+GGG | 0.397705 | 3_1:-89129372 | Msa0385590:CDS |
| TCTTATAGTCCTTTACCATA+TGG | 0.400326 | 3_1:-89127088 | Msa0385590:three_prime_UTR |
| CCAAGCAATGCTGATTCAAC+AGG | 0.404569 | 3_1:+89126904 | None:intergenic |
| TTCTTACGCTGCAAAGTAGA+TGG | 0.406026 | 3_1:+89131586 | None:intergenic |
| ATCATAGTGCGTTTACTGTT+GGG | 0.406603 | 3_1:-89129320 | Msa0385590:CDS |
| TTGGTCTTCTTCACTTGTTA+GGG | 0.416132 | 3_1:-89131728 | Msa0385590:five_prime_UTR |
| TTCACCCTACTAGTTGCAAT+CGG | 0.422424 | 3_1:-89127213 | Msa0385590:three_prime_UTR |
| ATCCTCCTCTGCAATATGTT+TGG | 0.422847 | 3_1:+89127265 | None:intergenic |
| GTTCTTCAGCTAGTGTTGCT+TGG | 0.427729 | 3_1:-89130117 | Msa0385590:CDS |
| ACTTCTCTGCCTGGTCATAT+AGG | 0.427888 | 3_1:+89129702 | None:intergenic |
| CACCCTTCGCCATGATGAGT+TGG | 0.431601 | 3_1:-89129851 | Msa0385590:CDS |
| ATTGTGATTCATAGATTTGA+AGG | 0.432257 | 3_1:-89131500 | Msa0385590:intron |
| TGTCGTTATCTCTTCTACCT+CGG | 0.432513 | 3_1:-89129458 | Msa0385590:CDS |
| GTCGTTATCTCTTCTACCTC+GGG | 0.434794 | 3_1:-89129457 | Msa0385590:CDS |
| CCATGAACTTACTGGAGATC+TGG | 0.437963 | 3_1:-89130026 | Msa0385590:CDS |
| TAACAGTAAATTTCTAGCTC+AGG | 0.444215 | 3_1:+89130284 | None:intergenic |
| AAATGGGTGGATGGTGTCTA+AGG | 0.451020 | 3_1:-89127465 | Msa0385590:CDS |
| TTGACCTCAACTTCTCTGCC+TGG | 0.452207 | 3_1:+89129693 | None:intergenic |
| TCGCCATGATGAGTTGGGTC+AGG | 0.456432 | 3_1:-89129845 | Msa0385590:intron |
| ATGCTCTCAGCATCAGCAAC+AGG | 0.456927 | 3_1:+89127539 | None:intergenic |
| TATCATAGTGCGTTTACTGT+TGG | 0.459477 | 3_1:-89129321 | Msa0385590:CDS |
| TGGATGGTGTCTAAGGAAAC+AGG | 0.461685 | 3_1:-89127458 | Msa0385590:CDS |
| ACTAGCTGAAGAACAAGCTT+TGG | 0.471713 | 3_1:+89130126 | None:intergenic |
| GAACGAAATTGAGCGAAATC+GGG | 0.475073 | 3_1:+89131675 | None:intergenic |
| AGTGTTTAGCTGTAGGGGTA+GGG | 0.475084 | 3_1:+89130312 | None:intergenic |
| AGATCCCGATTGCAACTAGT+AGG | 0.484380 | 3_1:+89127208 | None:intergenic |
| GTGTTTAGCTGTAGGGGTAG+GGG | 0.484533 | 3_1:+89130313 | None:intergenic |
| CTCCACACATGAGCCTCAGC+TGG | 0.484832 | 3_1:-89127426 | Msa0385590:CDS |
| TGCGAAGCAGCAAATTAAGA+AGG | 0.487151 | 3_1:+89129741 | None:intergenic |
| ACCCTTCGCCATGATGAGTT+GGG | 0.488916 | 3_1:-89129850 | Msa0385590:CDS |
| GCAACAAGTGTTTAGCTGTA+GGG | 0.489547 | 3_1:+89130306 | None:intergenic |
| AACTTCCTTCGAGTAAGAAC+CGG | 0.493423 | 3_1:+89131456 | None:intergenic |
| GCTACATTGGATCATGCAAA+TGG | 0.497010 | 3_1:-89127482 | Msa0385590:CDS |
| CTGTCGATGTTATTGCATCT+AGG | 0.500017 | 3_1:-89130072 | Msa0385590:CDS |
| AGATGGAACTTGTGGAGAAA+CGG | 0.500179 | 3_1:+89131603 | None:intergenic |
| TCACCCTACTAGTTGCAATC+GGG | 0.501446 | 3_1:-89127212 | Msa0385590:three_prime_UTR |
| GTCTCCGACATAATGTCATC+AGG | 0.501605 | 3_1:-89127646 | Msa0385590:CDS |
| ACAACAGCAAGAGCAGGAAC+TGG | 0.505747 | 3_1:-89127288 | Msa0385590:CDS |
| GAATTCCAGGCTGTCCGCAT+TGG | 0.508181 | 3_1:-89127749 | Msa0385590:intron |
| CCTGTTGAATCAGCATTGCT+TGG | 0.516562 | 3_1:-89126904 | Msa0385590:three_prime_UTR |
| TGTCAAAGGCTATTCGTGAT+GGG | 0.517542 | 3_1:-89127514 | Msa0385590:CDS |
| ACATTTGTAAGCTCAAAGTA+AGG | 0.517576 | 3_1:+89129242 | None:intergenic |
| ATGAGTTCCGTCTGCACTGA+AGG | 0.520485 | 3_1:+89127682 | None:intergenic |
| GTAAAGCTCCAGTTGCAGCT+CGG | 0.520793 | 3_1:-89129373 | Msa0385590:CDS |
| GTAAGAACCGGTCTCAATAA+CGG | 0.524017 | 3_1:+89131468 | None:intergenic |
| AGAGAGACAACAGCAAGAGC+AGG | 0.524456 | 3_1:-89127294 | Msa0385590:CDS |
| GAAACCTACTTGCATTGCAT+CGG | 0.524818 | 3_1:-89129879 | Msa0385590:CDS |
| GGAGGATGATCATGAGATGG+AGG | 0.525489 | 3_1:-89130363 | Msa0385590:CDS |
| AAGTGTTTAGCTGTAGGGGT+AGG | 0.526202 | 3_1:+89130311 | None:intergenic |
| AGCTAGTGAGATGCGAGAAT+AGG | 0.527722 | 3_1:+89127598 | None:intergenic |
| TGAAGCACATTCAAACCAGC+AGG | 0.534748 | 3_1:-89129657 | Msa0385590:intron |
| GTGAGATTTCCATATGGTAA+AGG | 0.535658 | 3_1:+89127079 | None:intergenic |
| CGAACTGTCTTTATGCAGAA+AGG | 0.537836 | 3_1:-89129284 | Msa0385590:CDS |
| GTGTCAAAGGCTATTCGTGA+TGG | 0.538072 | 3_1:-89127515 | Msa0385590:CDS |
| TGCTGAGAGCATTGTGTCAA+AGG | 0.543350 | 3_1:-89127528 | Msa0385590:CDS |
| ATATGGTAAAGGACTATAAG+AGG | 0.543838 | 3_1:+89127090 | None:intergenic |
| TGTAGGGGTAGGGGTTTGAA+TGG | 0.543905 | 3_1:+89130322 | None:intergenic |
| TTCGAATTCAATGTAACAAG+TGG | 0.544110 | 3_1:-89129346 | Msa0385590:CDS |
| TGCATAAAGACAGTTCGCTC+AGG | 0.545859 | 3_1:+89129290 | None:intergenic |
| CGACATAATGTCATCAGGAC+TGG | 0.551358 | 3_1:-89127641 | Msa0385590:CDS |
| CAGACTGTGAGATTTCCATA+TGG | 0.552191 | 3_1:+89127073 | None:intergenic |
| GGCAGAGAAGTTGAGGTCAA+AGG | 0.552276 | 3_1:-89129690 | Msa0385590:CDS |
| GACAGAATGTGTCGCCCAGA+TGG | 0.554889 | 3_1:-89126845 | Msa0385590:three_prime_UTR |
| GGCAACAAGTGTTTAGCTGT+AGG | 0.555242 | 3_1:+89130305 | None:intergenic |
| TGTCTTTATGCAGAAAGGAA+TGG | 0.555289 | 3_1:-89129279 | Msa0385590:CDS |
| AAACCTGACCCAACTCATCA+TGG | 0.555876 | 3_1:+89129842 | None:intergenic |
| TTAGCATGAGGTTCAGAACC+AGG | 0.559671 | 3_1:+89131340 | None:intergenic |
| GACCCAACTCATCATGGCGA+AGG | 0.562132 | 3_1:+89129848 | None:intergenic |
| GCGAAGCAGCAAATTAAGAA+GGG | 0.562737 | 3_1:+89129742 | None:intergenic |
| GGATGATCATGAGATGGAGG+TGG | 0.570304 | 3_1:-89130360 | Msa0385590:CDS |
| TCGAATTCAATGTAACAAGT+GGG | 0.570948 | 3_1:-89129345 | Msa0385590:CDS |
| ATGACCAGGCAGAGAAGTTG+AGG | 0.578368 | 3_1:-89129697 | Msa0385590:CDS |
| ATAGGAGGATGATCATGAGA+TGG | 0.579908 | 3_1:-89130366 | Msa0385590:intron |
| CAACAAGTGTTTAGCTGTAG+GGG | 0.588492 | 3_1:+89130307 | None:intergenic |
| ATAGCGTCCGTTATTGAGAC+CGG | 0.589430 | 3_1:-89131475 | Msa0385590:CDS |
| GGCCAAACATATTGCAGAGG+AGG | 0.589837 | 3_1:-89127267 | Msa0385590:CDS |
| GGTTTGAATGGAAGATGTTG+CGG | 0.590755 | 3_1:+89130334 | None:intergenic |
| GCAACCACCTTCAGTGCAGA+CGG | 0.594746 | 3_1:-89127689 | Msa0385590:CDS |
| GATCCCGATTGCAACTAGTA+GGG | 0.595058 | 3_1:+89127209 | None:intergenic |
| TGGGGCAATTGATGCTACAT+TGG | 0.595169 | 3_1:-89127495 | Msa0385590:CDS |
| GAACATAGTAATTACTAGCA+AGG | 0.595996 | 3_1:+89126963 | None:intergenic |
| CTACATTGGATCATGCAAAT+GGG | 0.597867 | 3_1:-89127481 | Msa0385590:CDS |
| ATGGAAATATAAGCAAATGT+CGG | 0.598463 | 3_1:+89127177 | None:intergenic |
| CAATCCGATGCAATGCAAGT+AGG | 0.600803 | 3_1:+89129875 | None:intergenic |
| AAAGCTCCAGTTGCAGCTCG+GGG | 0.611705 | 3_1:-89129371 | Msa0385590:CDS |
| TACGCAGACAATTTAGCATG+AGG | 0.613498 | 3_1:+89131328 | None:intergenic |
| ACCCAACTCATCATGGCGAA+GGG | 0.614807 | 3_1:+89129849 | None:intergenic |
| GGTCATTCAGAGTAACACCT+TGG | 0.617949 | 3_1:+89126925 | None:intergenic |
| GGATCATGCAAATGGGTGGA+TGG | 0.621270 | 3_1:-89127474 | Msa0385590:CDS |
| TTTGAATGTGCTTCAAATCG+TGG | 0.621618 | 3_1:+89129665 | None:intergenic |
| TGAGACCGGTTCTTACTCGA+AGG | 0.622392 | 3_1:-89131461 | Msa0385590:CDS |
| CAACTCATCATGGCGAAGGG+TGG | 0.622685 | 3_1:+89129852 | None:intergenic |
| ATTGTCTGCGTATCTTCCCA+AGG | 0.623168 | 3_1:-89131317 | Msa0385590:intron |
| GGAGATCTGGCTGAAATTCG+GGG | 0.623695 | 3_1:-89130013 | Msa0385590:CDS |
| TGCAAAGTAGATGGAACTTG+TGG | 0.628606 | 3_1:+89131595 | None:intergenic |
| CGAGAATTGAAAGCCAGCTG+AGG | 0.642823 | 3_1:+89127413 | None:intergenic |
| GTCAAAGGCTATTCGTGATG+GGG | 0.645352 | 3_1:-89127513 | Msa0385590:CDS |
| CAGTCCTGATGACATTATGT+CGG | 0.646136 | 3_1:+89127642 | None:intergenic |
| TCACTACAACCTATATGACC+AGG | 0.647246 | 3_1:-89129711 | Msa0385590:CDS |
| TGTGGAGAAACGGAATTCGA+AGG | 0.647707 | 3_1:+89131613 | None:intergenic |
| TTCGTCTTACAATTGCATTG+AGG | 0.658485 | 3_1:-89131414 | Msa0385590:CDS |
| GAGATCTGGCTGAAATTCGG+GGG | 0.660656 | 3_1:-89130012 | Msa0385590:intron |
| CATTGGATCATGCAAATGGG+TGG | 0.661664 | 3_1:-89127478 | Msa0385590:CDS |
| AGCCAGCTGAGGCTCATGTG+TGG | 0.668454 | 3_1:+89127424 | None:intergenic |
| AGTTCCGTCTGCACTGAAGG+TGG | 0.692083 | 3_1:+89127685 | None:intergenic |
| ACTGGCCAAACATATTGCAG+AGG | 0.692977 | 3_1:-89127270 | Msa0385590:CDS |
| AGACCAAACAAGAAGCAACG+TGG | 0.750508 | 3_1:+89131744 | None:intergenic |
| ACAGCTCCAAATCTCCAATG+CGG | 0.755080 | 3_1:+89127735 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTAATAAAGAAAAAT+TGG | + | chr3_1:89129844-89129863 | None:intergenic | 10.0% |
| !! | TTAATAATTATAGATTCAAT+TGG | + | chr3_1:89130583-89130602 | None:intergenic | 10.0% |
| !!! | AGAATATTTTATATATTTGT+TGG | - | chr3_1:89130682-89130701 | Msa0385590:intron | 10.0% |
| !!! | TTTTTTTTGTTGGTTATTTA+GGG | - | chr3_1:89127433-89127452 | Msa0385590:CDS | 15.0% |
| !! | GTAATTTAGATTAAGAATTA+AGG | + | chr3_1:89127999-89128018 | None:intergenic | 15.0% |
| !! | AATTCTTAATCTAAATTACT+AGG | - | chr3_1:89128000-89128019 | Msa0385590:intron | 15.0% |
| !!! | TGTCTGATTTTTTATATTTT+AGG | - | chr3_1:89128448-89128467 | Msa0385590:intron | 15.0% |
| !! | TCTATATAATCAATAAATCA+AGG | - | chr3_1:89128627-89128646 | Msa0385590:intron | 15.0% |
| !!! | TGATTTTTTTTTGTACTTTT+TGG | - | chr3_1:89129026-89129045 | Msa0385590:intron | 15.0% |
| !! | ATATATTATTATGACAAACA+AGG | + | chr3_1:89129401-89129420 | None:intergenic | 15.0% |
| !! | TATTAAAAAAGTCAAAACAA+AGG | - | chr3_1:89129853-89129872 | Msa0385590:CDS | 15.0% |
| !! | ATTAAAAAAGTCAAAACAAA+GGG | - | chr3_1:89129854-89129873 | Msa0385590:CDS | 15.0% |
| !! | TAATTATTAATGTTATCTCA+AGG | - | chr3_1:89130593-89130612 | Msa0385590:intron | 15.0% |
| !! | TGAAAAAAAGTCAATTAATT+AGG | - | chr3_1:89131610-89131629 | Msa0385590:CDS | 15.0% |
| !! | CAAAATTCACAAATTGAAAA+CGG | + | chr3_1:89127075-89127094 | None:intergenic | 20.0% |
| !! | TTAACTTAGATTTAGCATTT+AGG | - | chr3_1:89127321-89127340 | Msa0385590:CDS | 20.0% |
| !! | TAACTTAGATTTAGCATTTA+GGG | - | chr3_1:89127322-89127341 | Msa0385590:CDS | 20.0% |
| !!! | GATGAATTAGTTTTTTTTGT+TGG | - | chr3_1:89127423-89127442 | Msa0385590:CDS | 20.0% |
| !!! | GTTTTTTTTGTTGGTTATTT+AGG | - | chr3_1:89127432-89127451 | Msa0385590:CDS | 20.0% |
| !! | GTAGTTTCAATTAAGAATTA+GGG | + | chr3_1:89127612-89127631 | None:intergenic | 20.0% |
| !! | TAATCACTTAAATGATAATC+AGG | - | chr3_1:89127934-89127953 | Msa0385590:intron | 20.0% |
| !! | TATCTTCATCAGAAAATATT+AGG | - | chr3_1:89128138-89128157 | Msa0385590:intron | 20.0% |
| !! | ATATAATCAATAAATCAAGG+AGG | - | chr3_1:89128630-89128649 | Msa0385590:intron | 20.0% |
| !!! | AACTTGTTTAAATCTTTTTG+TGG | - | chr3_1:89128681-89128700 | Msa0385590:intron | 20.0% |
| !!! | GAGAAGATTTTTTTATGTTA+GGG | - | chr3_1:89128792-89128811 | Msa0385590:intron | 20.0% |
| !! | GATAAGTTATAACTAAAAAG+TGG | + | chr3_1:89129539-89129558 | None:intergenic | 20.0% |
| !! | TTAAAAAAGTCAAAACAAAG+GGG | - | chr3_1:89129855-89129874 | Msa0385590:CDS | 20.0% |
| !!! | GAGTACTTTTTGTATATAAA+TGG | - | chr3_1:89130052-89130071 | Msa0385590:CDS | 20.0% |
| !!! | TTTTTGAATGTTCTAAATAC+AGG | - | chr3_1:89130225-89130244 | Msa0385590:intron | 20.0% |
| !! | TAAACTCTTAATCTCTTTAA+TGG | + | chr3_1:89130269-89130288 | None:intergenic | 20.0% |
| !! | TGAGAGATAGAAAATAAATA+AGG | - | chr3_1:89130379-89130398 | Msa0385590:intron | 20.0% |
| !! | GCAACAATTAACTATATTTA+GGG | + | chr3_1:89130427-89130446 | None:intergenic | 20.0% |
| !!! | GAAATTTTCAACTTTTGAAA+GGG | + | chr3_1:89131470-89131489 | None:intergenic | 20.0% |
| !!! | TGAAATTTTCAACTTTTGAA+AGG | + | chr3_1:89131471-89131490 | None:intergenic | 20.0% |
| !!! | TGAAAATTTCATTTTCTACA+TGG | - | chr3_1:89131480-89131499 | Msa0385590:CDS | 20.0% |
| !! | CGTTTTCAATTTGTGAATTT+TGG | - | chr3_1:89127073-89127092 | Msa0385590:three_prime_UTR | 25.0% |
| ! | ATTGTGATTCATAGATTTGA+AGG | - | chr3_1:89127097-89127116 | Msa0385590:three_prime_UTR | 25.0% |
| ! | TTAAATCTACCATTGCATTT+AGG | - | chr3_1:89127400-89127419 | Msa0385590:CDS | 25.0% |
| ! | TAAATCTACCATTGCATTTA+GGG | - | chr3_1:89127401-89127420 | Msa0385590:CDS | 25.0% |
| !! | GACTATTTTCATACAGTTTA+TGG | + | chr3_1:89127527-89127546 | None:intergenic | 25.0% |
| ! | CGTAGTTTCAATTAAGAATT+AGG | + | chr3_1:89127613-89127632 | None:intergenic | 25.0% |
| ! | AATTCTTAATTGAAACTACG+AGG | - | chr3_1:89127613-89127632 | Msa0385590:CDS | 25.0% |
| ! | ATTCTTAATTGAAACTACGA+GGG | - | chr3_1:89127614-89127633 | Msa0385590:CDS | 25.0% |
| !! | TGTTTTCTATGATTGCATTT+AGG | - | chr3_1:89127711-89127730 | Msa0385590:CDS | 25.0% |
| !! | GTTTTCTATGATTGCATTTA+GGG | - | chr3_1:89127712-89127731 | Msa0385590:CDS | 25.0% |
| !! | ATTTTCATAACCTATCATAG+AGG | + | chr3_1:89127870-89127889 | None:intergenic | 25.0% |
| ! | GATTAAGAATTAAGGATGTT+TGG | + | chr3_1:89127991-89128010 | None:intergenic | 25.0% |
| !! | TTTTCTGATGAAGATAGAAA+GGG | + | chr3_1:89128134-89128153 | None:intergenic | 25.0% |
| !! | ATTTTCTGATGAAGATAGAA+AGG | + | chr3_1:89128135-89128154 | None:intergenic | 25.0% |
| !!! | AATTTTGTCACTGATTGTAT+AGG | - | chr3_1:89128213-89128232 | Msa0385590:intron | 25.0% |
| ! | TGAAAACATATAAGCAATAC+AGG | + | chr3_1:89128392-89128411 | None:intergenic | 25.0% |
| !!! | GGAGAAGATTTTTTTATGTT+AGG | - | chr3_1:89128791-89128810 | Msa0385590:intron | 25.0% |
| ! | AAGGAGTAAGAATTAACAAA+AGG | + | chr3_1:89129079-89129098 | None:intergenic | 25.0% |
| ! | ACTACTACTAAAAAAAGAAG+TGG | - | chr3_1:89129568-89129587 | Msa0385590:intron | 25.0% |
| ! | CTACTACTAAAAAAAGAAGT+GGG | - | chr3_1:89129569-89129588 | Msa0385590:intron | 25.0% |
| ! | AAACACTCCTAAAAAATAAG+CGG | + | chr3_1:89129635-89129654 | None:intergenic | 25.0% |
| ! | AGCAAGTTAAAACTAAAAAG+TGG | + | chr3_1:89129706-89129725 | None:intergenic | 25.0% |
| ! | AATAGTCCTAAACAATAAGT+GGG | - | chr3_1:89129728-89129747 | Msa0385590:CDS | 25.0% |
| ! | CTAACACACATCTAATTTAT+AGG | + | chr3_1:89129793-89129812 | None:intergenic | 25.0% |
| !!! | TACAAAAAGTACTCATCATT+TGG | + | chr3_1:89130046-89130065 | None:intergenic | 25.0% |
| ! | ATAAGCATTTCATTACATCT+CGG | + | chr3_1:89130133-89130152 | None:intergenic | 25.0% |
| ! | CGCAACAATTAACTATATTT+AGG | + | chr3_1:89130428-89130447 | None:intergenic | 25.0% |
| ! | GAAGAAAGAAAATGGTTTAT+TGG | - | chr3_1:89130447-89130466 | Msa0385590:intron | 25.0% |
| !! | ATAAAATATTCTTTTGGCAC+AGG | + | chr3_1:89130674-89130693 | None:intergenic | 25.0% |
| !!! | GTTCTATTTTTTCAGTCTTT+GGG | - | chr3_1:89130704-89130723 | Msa0385590:intron | 25.0% |
| !! | TCATTTGTTAATTCTCCATT+TGG | - | chr3_1:89130768-89130787 | Msa0385590:intron | 25.0% |
| ! | TATAGCAAATAACACAAGTA+TGG | + | chr3_1:89130798-89130817 | None:intergenic | 25.0% |
| ! | ATGGAAATATAAGCAAATGT+CGG | + | chr3_1:89131423-89131442 | None:intergenic | 25.0% |
| !! | TCGAAGTTTTTATTATTCCA+AGG | - | chr3_1:89131655-89131674 | Msa0385590:exon | 25.0% |
| TTAACACAAGTTTGTACCTT+GGG | + | chr3_1:89127299-89127318 | None:intergenic | 30.0% | |
| ATTAACACAAGTTTGTACCT+TGG | + | chr3_1:89127300-89127319 | None:intergenic | 30.0% | |
| TAATTCATCCCTAAATGCAA+TGG | + | chr3_1:89127412-89127431 | None:intergenic | 30.0% | |
| TTCTTAATTGAAACTACGAG+GGG | - | chr3_1:89127615-89127634 | Msa0385590:CDS | 30.0% | |
| ! | GACTTTTTGACAGATCTTTT+AGG | - | chr3_1:89127820-89127839 | Msa0385590:intron | 30.0% |
| !!! | TTCTCTTCCTTTGTTTTTGA+CGG | - | chr3_1:89128164-89128183 | Msa0385590:intron | 30.0% |
| TTATTTCCCGTCAAAAACAA+AGG | + | chr3_1:89128174-89128193 | None:intergenic | 30.0% | |
| ! | TTTTTGACGGGAAATAACAA+TGG | - | chr3_1:89128177-89128196 | Msa0385590:intron | 30.0% |
| !! | TAACAGTAAATTTCTAGCTC+AGG | + | chr3_1:89128316-89128335 | None:intergenic | 30.0% |
| TGATCAGAAAAAATACAACG+AGG | - | chr3_1:89128360-89128379 | Msa0385590:intron | 30.0% | |
| ! | ATGTTTTCAACTATGCAAAC+TGG | - | chr3_1:89128403-89128422 | Msa0385590:intron | 30.0% |
| AATCAATAAGCTTCATCACA+AGG | + | chr3_1:89129011-89129030 | None:intergenic | 30.0% | |
| GAAAATTCGGACTATTCAAT+TGG | - | chr3_1:89129162-89129181 | Msa0385590:intron | 30.0% | |
| TTCGAATTCAATGTAACAAG+TGG | - | chr3_1:89129251-89129270 | Msa0385590:CDS | 30.0% | |
| TCGAATTCAATGTAACAAGT+GGG | - | chr3_1:89129252-89129271 | Msa0385590:CDS | 30.0% | |
| ACATTTGTAAGCTCAAAGTA+AGG | + | chr3_1:89129358-89129377 | None:intergenic | 30.0% | |
| ACAAATGTAAGTCCACATTA+TGG | - | chr3_1:89129370-89129389 | Msa0385590:CDS | 30.0% | |
| AGTACTCCATAAAAACTAGT+CGG | + | chr3_1:89129486-89129505 | None:intergenic | 30.0% | |
| !!! | TTTACACCCGCTTATTTTTT+AGG | - | chr3_1:89129625-89129644 | Msa0385590:intron | 30.0% |
| AACACTCCTAAAAAATAAGC+GGG | + | chr3_1:89129634-89129653 | None:intergenic | 30.0% | |
| TTAGAAACTGTTAACTGAAG+TGG | - | chr3_1:89129654-89129673 | Msa0385590:intron | 30.0% | |
| ! | CACTTATTGTTTAGGACTAT+TGG | + | chr3_1:89129729-89129748 | None:intergenic | 30.0% |
| CAATAGTCCTAAACAATAAG+TGG | - | chr3_1:89129727-89129746 | Msa0385590:CDS | 30.0% | |
| CACACATCTAATTTATAGGT+GGG | + | chr3_1:89129789-89129808 | None:intergenic | 30.0% | |
| ACACACATCTAATTTATAGG+TGG | + | chr3_1:89129790-89129809 | None:intergenic | 30.0% | |
| AAAGAAAGATGACAATGTGA+AGG | + | chr3_1:89129964-89129983 | None:intergenic | 30.0% | |
| ! | TTTTCTTCAACAATTGAGCT+AGG | + | chr3_1:89129993-89130012 | None:intergenic | 30.0% |
| ! | TTCACTATTTTCTGAGCATT+TGG | + | chr3_1:89130023-89130042 | None:intergenic | 30.0% |
| ATTGTTGCGAAGAAAGAAAA+TGG | - | chr3_1:89130439-89130458 | Msa0385590:intron | 30.0% | |
| ! | CACCTTTTAATGTTATCTCA+AGG | - | chr3_1:89130500-89130519 | Msa0385590:intron | 30.0% |
| ATTCCTTCTCAGATAAACTA+TGG | + | chr3_1:89130526-89130545 | None:intergenic | 30.0% | |
| !!! | GGTTCTATTTTTTCAGTCTT+TGG | - | chr3_1:89130703-89130722 | Msa0385590:intron | 30.0% |
| ! | TGTTAGTTTAGCTTATGTTG+TGG | - | chr3_1:89130826-89130845 | Msa0385590:intron | 30.0% |
| ! | TCTTTTTCTTTGTGTGTGTT+TGG | + | chr3_1:89131265-89131284 | None:intergenic | 30.0% |
| CTAATGGAAGTTCTTCATAA+TGG | + | chr3_1:89131442-89131461 | None:intergenic | 30.0% | |
| !! | TTTTGAAAGGGAAATGCTAA+TGG | + | chr3_1:89131458-89131477 | None:intergenic | 30.0% |
| ATATGGTAAAGGACTATAAG+AGG | + | chr3_1:89131510-89131529 | None:intergenic | 30.0% | |
| TCTTATAGTCCTTTACCATA+TGG | - | chr3_1:89131509-89131528 | Msa0385590:intron | 30.0% | |
| ! | ATTCATGATGATGACTTCTA+TGG | - | chr3_1:89131552-89131571 | Msa0385590:intron | 30.0% |
| !! | CTTCTATGGTTTGTTTCTTT+CGG | - | chr3_1:89131566-89131585 | Msa0385590:intron | 30.0% |
| !! | TTCTATGGTTTGTTTCTTTC+GGG | - | chr3_1:89131567-89131586 | Msa0385590:intron | 30.0% |
| ! | TTTCGGGATAATTGTGATTT+TGG | - | chr3_1:89131583-89131602 | Msa0385590:intron | 30.0% |
| GAACATAGTAATTACTAGCA+AGG | + | chr3_1:89131637-89131656 | None:intergenic | 30.0% | |
| ! | TGGTGTAATTTTATCCATCT+GGG | + | chr3_1:89131769-89131788 | None:intergenic | 30.0% |
| ! | ATGGTGTAATTTTATCCATC+TGG | + | chr3_1:89131770-89131789 | None:intergenic | 30.0% |
| ! | TTTGGTCTTCTTCACTTGTT+AGG | - | chr3_1:89126868-89126887 | Msa0385590:three_prime_UTR | 35.0% |
| ! | TTGGTCTTCTTCACTTGTTA+GGG | - | chr3_1:89126869-89126888 | Msa0385590:three_prime_UTR | 35.0% |
| TGAACGAAATTGAGCGAAAT+CGG | + | chr3_1:89126926-89126945 | None:intergenic | 35.0% | |
| TGAGATGTGAAATCGATAGA+CGG | + | chr3_1:89127040-89127059 | None:intergenic | 35.0% | |
| TTCGTCTTACAATTGCATTG+AGG | - | chr3_1:89127183-89127202 | Msa0385590:three_prime_UTR | 35.0% | |
| GTTGGTTATTTAGGGATGTT+TGG | - | chr3_1:89127441-89127460 | Msa0385590:CDS | 35.0% | |
| GTTATTTAGGGATGTTTGGA+TGG | - | chr3_1:89127445-89127464 | Msa0385590:CDS | 35.0% | |
| ACACTTGTGGAAACAACTTA+AGG | - | chr3_1:89127496-89127515 | Msa0385590:CDS | 35.0% | |
| ! | TACTTGCAACTTTTGCAACA+TGG | - | chr3_1:89127670-89127689 | Msa0385590:CDS | 35.0% |
| TTCTATGATTGCATTTAGGG+AGG | - | chr3_1:89127715-89127734 | Msa0385590:CDS | 35.0% | |
| !! | TCTTTCTTGTTCTGCTGTTT+TGG | - | chr3_1:89127755-89127774 | Msa0385590:intron | 35.0% |
| !!! | CTTTCTTGTTCTGCTGTTTT+GGG | - | chr3_1:89127756-89127775 | Msa0385590:intron | 35.0% |
| AAGTGTTTATGTCAGGAGAT+AGG | + | chr3_1:89127796-89127815 | None:intergenic | 35.0% | |
| TAGAGGACTTATGGAATATG+CGG | + | chr3_1:89127853-89127872 | None:intergenic | 35.0% | |
| TTCCATAAGTCCTCTATGAT+AGG | - | chr3_1:89127857-89127876 | Msa0385590:intron | 35.0% | |
| AACCTATCATAGAGGACTTA+TGG | + | chr3_1:89127862-89127881 | None:intergenic | 35.0% | |
| AAAGTCACAAGCAGTAAATG+GGG | + | chr3_1:89128053-89128072 | None:intergenic | 35.0% | |
| CAAAGTCACAAGCAGTAAAT+GGG | + | chr3_1:89128054-89128073 | None:intergenic | 35.0% | |
| ACAAAGTCACAAGCAGTAAA+TGG | + | chr3_1:89128055-89128074 | None:intergenic | 35.0% | |
| TGAAGATAGAAAGGGAAAGA+GGG | + | chr3_1:89128126-89128145 | None:intergenic | 35.0% | |
| ATGAAGATAGAAAGGGAAAG+AGG | + | chr3_1:89128127-89128146 | None:intergenic | 35.0% | |
| !!! | TCTCTTCCTTTGTTTTTGAC+GGG | - | chr3_1:89128165-89128184 | Msa0385590:intron | 35.0% |
| ! | TTTGTCACTGATTGTATAGG+AGG | - | chr3_1:89128216-89128235 | Msa0385590:intron | 35.0% |
| TCAGAAAAAGTAGTACAAGC+AGG | + | chr3_1:89128339-89128358 | None:intergenic | 35.0% | |
| GGCAAATAATTGAATGCTCA+TGG | - | chr3_1:89128424-89128443 | Msa0385590:intron | 35.0% | |
| TCATATAGCCATGAACTTAC+TGG | - | chr3_1:89128563-89128582 | Msa0385590:intron | 35.0% | |
| TCAGGTTTGTGTTCTACTTA+TGG | - | chr3_1:89128770-89128789 | Msa0385590:intron | 35.0% | |
| CTTACCTGTTGATGTATTTC+AGG | - | chr3_1:89128829-89128848 | Msa0385590:intron | 35.0% | |
| GTTTCCTGAAATACATCAAC+AGG | + | chr3_1:89128836-89128855 | None:intergenic | 35.0% | |
| TTTGAATGTGCTTCAAATCG+TGG | + | chr3_1:89128935-89128954 | None:intergenic | 35.0% | |
| ! | ACGAATTTCTTTTGTGCTCA+TGG | + | chr3_1:89128982-89129001 | None:intergenic | 35.0% |
| TATCATAGTGCGTTTACTGT+TGG | - | chr3_1:89129276-89129295 | Msa0385590:CDS | 35.0% | |
| ATCATAGTGCGTTTACTGTT+GGG | - | chr3_1:89129277-89129296 | Msa0385590:CDS | 35.0% | |
| TGTCTTTATGCAGAAAGGAA+TGG | - | chr3_1:89129318-89129337 | Msa0385590:CDS | 35.0% | |
| AACAAGGTTGAACCATAATG+TGG | + | chr3_1:89129385-89129404 | None:intergenic | 35.0% | |
| ATAAAAACTAGTCGGTGTAG+TGG | + | chr3_1:89129478-89129497 | None:intergenic | 35.0% | |
| !!! | ACTACACCGACTAGTTTTTA+TGG | - | chr3_1:89129477-89129496 | Msa0385590:intron | 35.0% |
| TGTATTCTAGCAAATGCCTA+TGG | - | chr3_1:89129592-89129611 | Msa0385590:intron | 35.0% | |
| GTATTCTAGCAAATGCCTAT+GGG | - | chr3_1:89129593-89129612 | Msa0385590:intron | 35.0% | |
| TGTAAATTAGTAGCTCCCAT+AGG | + | chr3_1:89129611-89129630 | None:intergenic | 35.0% | |
| ! | TTTTCTTCATCCATGTGTTG+TGG | + | chr3_1:89130082-89130101 | None:intergenic | 35.0% |
| ! | GAATGTTCTAAATACAGGTG+TGG | - | chr3_1:89130230-89130249 | Msa0385590:intron | 35.0% |
| GGTTTATTGGTCCATGTAAA+AGG | - | chr3_1:89130460-89130479 | Msa0385590:intron | 35.0% | |
| ! | TTGGTCCATGTAAAAGGTAT+TGG | - | chr3_1:89130466-89130485 | Msa0385590:intron | 35.0% |
| !! | TGGTCCATGTAAAAGGTATT+GGG | - | chr3_1:89130467-89130486 | Msa0385590:intron | 35.0% |
| ! | AGTACCCAATACCTTTTACA+TGG | + | chr3_1:89130474-89130493 | None:intergenic | 35.0% |
| GGCCTTGAGATAACATTAAA+AGG | + | chr3_1:89130505-89130524 | None:intergenic | 35.0% | |
| CAACCTTTCTTGCACAATTT+AGG | - | chr3_1:89130631-89130650 | Msa0385590:intron | 35.0% | |
| ! | AAATATTCTTTTGGCACAGG+TGG | + | chr3_1:89130671-89130690 | None:intergenic | 35.0% |
| CACAAGTATGGATATCCAAA+TGG | + | chr3_1:89130786-89130805 | None:intergenic | 35.0% | |
| CTGATGTTGCTAAAAAGTTG+AGG | - | chr3_1:89131020-89131039 | Msa0385590:intron | 35.0% | |
| TGTTGCTAAAAAGTTGAGGT+TGG | - | chr3_1:89131024-89131043 | Msa0385590:intron | 35.0% | |
| CTACATTGGATCATGCAAAT+GGG | - | chr3_1:89131116-89131135 | Msa0385590:intron | 35.0% | |
| ! | TTTTCTTTGTGTGTGTTTGG+TGG | + | chr3_1:89131262-89131281 | None:intergenic | 35.0% |
| GTGAGATTTCCATATGGTAA+AGG | + | chr3_1:89131521-89131540 | None:intergenic | 35.0% | |
| GAACGAAATTGAGCGAAATC+GGG | + | chr3_1:89126925-89126944 | None:intergenic | 40.0% | |
| AGATGGAACTTGTGGAGAAA+CGG | + | chr3_1:89126997-89127016 | None:intergenic | 40.0% | |
| TGCAAAGTAGATGGAACTTG+TGG | + | chr3_1:89127005-89127024 | None:intergenic | 40.0% | |
| TTCTTACGCTGCAAAGTAGA+TGG | + | chr3_1:89127014-89127033 | None:intergenic | 40.0% | |
| GTAAGAACCGGTCTCAATAA+CGG | + | chr3_1:89127132-89127151 | None:intergenic | 40.0% | |
| AACTTCCTTCGAGTAAGAAC+CGG | + | chr3_1:89127144-89127163 | None:intergenic | 40.0% | |
| TACGCAGACAATTTAGCATG+AGG | + | chr3_1:89127272-89127291 | None:intergenic | 40.0% | |
| ACTTATTTGAGCTTGCCTAC+TGG | - | chr3_1:89127468-89127487 | Msa0385590:CDS | 40.0% | |
| ATAGGAGGATGATCATGAGA+TGG | - | chr3_1:89128231-89128250 | Msa0385590:intron | 40.0% | |
| GGTTTGAATGGAAGATGTTG+CGG | + | chr3_1:89128266-89128285 | None:intergenic | 40.0% | |
| CAACAAGTGTTTAGCTGTAG+GGG | + | chr3_1:89128293-89128312 | None:intergenic | 40.0% | |
| GCAACAAGTGTTTAGCTGTA+GGG | + | chr3_1:89128294-89128313 | None:intergenic | 40.0% | |
| ACTAGCTGAAGAACAAGCTT+TGG | + | chr3_1:89128474-89128493 | None:intergenic | 40.0% | |
| CTGTCGATGTTATTGCATCT+AGG | - | chr3_1:89128525-89128544 | Msa0385590:intron | 40.0% | |
| GAAACCTACTTGCATTGCAT+CGG | - | chr3_1:89128718-89128737 | Msa0385590:intron | 40.0% | |
| GCGAAGCAGCAAATTAAGAA+GGG | + | chr3_1:89128858-89128877 | None:intergenic | 40.0% | |
| TGCGAAGCAGCAAATTAAGA+AGG | + | chr3_1:89128859-89128878 | None:intergenic | 40.0% | |
| TCACTACAACCTATATGACC+AGG | - | chr3_1:89128886-89128905 | Msa0385590:intron | 40.0% | |
| GATAGAACTAACATACCTGC+TGG | + | chr3_1:89128958-89128977 | None:intergenic | 40.0% | |
| AGAACAAGTGTGCACATGAA+AGG | + | chr3_1:89129098-89129117 | None:intergenic | 40.0% | |
| GAGATAACGACAGAACTGAA+AGG | + | chr3_1:89129131-89129150 | None:intergenic | 40.0% | |
| TGTCGTTATCTCTTCTACCT+CGG | - | chr3_1:89129139-89129158 | Msa0385590:intron | 40.0% | |
| TCTTCTACCTCGGGAAAATT+CGG | - | chr3_1:89129149-89129168 | Msa0385590:intron | 40.0% | |
| CGAACTGTCTTTATGCAGAA+AGG | - | chr3_1:89129313-89129332 | Msa0385590:CDS | 40.0% | |
| ACTTTAGCAACATGCACCTT+AGG | - | chr3_1:89129503-89129522 | Msa0385590:intron | 40.0% | |
| CTTTAGCAACATGCACCTTA+GGG | - | chr3_1:89129504-89129523 | Msa0385590:intron | 40.0% | |
| AAGTGGTTAAATGCACCCTA+AGG | + | chr3_1:89129522-89129541 | None:intergenic | 40.0% | |
| AAGTGGTTAAATGCACCTCA+AGG | - | chr3_1:89129671-89129690 | Msa0385590:CDS | 40.0% | |
| CGTACACCCACTTATTGTTT+AGG | + | chr3_1:89129737-89129756 | None:intergenic | 40.0% | |
| TCTTGTCCAACTAACGTGTT+GGG | + | chr3_1:89129818-89129837 | None:intergenic | 40.0% | |
| ATCTTGTCCAACTAACGTGT+TGG | + | chr3_1:89129819-89129838 | None:intergenic | 40.0% | |
| TTGGAGGAAGATGAAACAAC+GGG | + | chr3_1:89129934-89129953 | None:intergenic | 40.0% | |
| GTTGGAGGAAGATGAAACAA+CGG | + | chr3_1:89129935-89129954 | None:intergenic | 40.0% | |
| GAAAGATGACAATGTGAAGG+AGG | + | chr3_1:89129961-89129980 | None:intergenic | 40.0% | |
| CTTCAACAATTGAGCTAGGA+AGG | + | chr3_1:89129989-89130008 | None:intergenic | 40.0% | |
| !!! | GGAAAAAGGCGCTTTTTTCT+GGG | + | chr3_1:89130320-89130339 | None:intergenic | 40.0% |
| GGAAAAAACGGAAGGGAAAA+AGG | + | chr3_1:89130334-89130353 | None:intergenic | 40.0% | |
| CGATTTCCCAGTGGAAAAAA+CGG | + | chr3_1:89130346-89130365 | None:intergenic | 40.0% | |
| CTAGTTTAACGATTTCCCAG+TGG | + | chr3_1:89130355-89130374 | None:intergenic | 40.0% | |
| AGGCCATAGTTTATCTGAGA+AGG | - | chr3_1:89130520-89130539 | Msa0385590:intron | 40.0% | |
| AGCTTATGTTGTGGAATTCC+AGG | - | chr3_1:89130835-89130854 | Msa0385590:intron | 40.0% | |
| ! | TTGGAGATTTGGAGCTGTTT+AGG | - | chr3_1:89130867-89130886 | Msa0385590:intron | 40.0% |
| CAGTCCTGATGACATTATGT+CGG | + | chr3_1:89130958-89130977 | None:intergenic | 40.0% | |
| TGTCAAAGGCTATTCGTGAT+GGG | - | chr3_1:89131083-89131102 | Msa0385590:intron | 40.0% | |
| GCTACATTGGATCATGCAAA+TGG | - | chr3_1:89131115-89131134 | Msa0385590:intron | 40.0% | |
| ATCCTCCTCTGCAATATGTT+TGG | + | chr3_1:89131335-89131354 | None:intergenic | 40.0% | |
| TTCACCCTACTAGTTGCAAT+CGG | - | chr3_1:89131384-89131403 | Msa0385590:CDS | 40.0% | |
| CAGACTGTGAGATTTCCATA+TGG | + | chr3_1:89131527-89131546 | None:intergenic | 40.0% | |
| TGACCACGTTGCTTCTTGTT+TGG | - | chr3_1:89126850-89126869 | Msa0385590:three_prime_UTR | 45.0% | |
| AGACCAAACAAGAAGCAACG+TGG | + | chr3_1:89126856-89126875 | None:intergenic | 45.0% | |
| TGTGGAGAAACGGAATTCGA+AGG | + | chr3_1:89126987-89127006 | None:intergenic | 45.0% | |
| ATAGCGTCCGTTATTGAGAC+CGG | - | chr3_1:89127122-89127141 | Msa0385590:three_prime_UTR | 45.0% | |
| TTAGCATGAGGTTCAGAACC+AGG | + | chr3_1:89127260-89127279 | None:intergenic | 45.0% | |
| ATTGTCTGCGTATCTTCCCA+AGG | - | chr3_1:89127280-89127299 | Msa0385590:CDS | 45.0% | |
| CCACAAGTGTTTATGCCAGT+AGG | + | chr3_1:89127486-89127505 | None:intergenic | 45.0% | |
| CCTACTGGCATAAACACTTG+TGG | - | chr3_1:89127483-89127502 | Msa0385590:CDS | 45.0% | |
| GTCTCGCAAGTGTTTATGTC+AGG | + | chr3_1:89127803-89127822 | None:intergenic | 45.0% | |
| AGTGTTTAGCTGTAGGGGTA+GGG | + | chr3_1:89128288-89128307 | None:intergenic | 45.0% | |
| AAGTGTTTAGCTGTAGGGGT+AGG | + | chr3_1:89128289-89128308 | None:intergenic | 45.0% | |
| GGCAACAAGTGTTTAGCTGT+AGG | + | chr3_1:89128295-89128314 | None:intergenic | 45.0% | |
| ! | GTTCTTCAGCTAGTGTTGCT+TGG | - | chr3_1:89128480-89128499 | Msa0385590:intron | 45.0% |
| CCAGATCTCCAGTAAGTTCA+TGG | + | chr3_1:89128574-89128593 | None:intergenic | 45.0% | |
| CCATGAACTTACTGGAGATC+TGG | - | chr3_1:89128571-89128590 | Msa0385590:intron | 45.0% | |
| CTGGAGATCTGGCTGAAATT+CGG | - | chr3_1:89128582-89128601 | Msa0385590:intron | 45.0% | |
| TGGAGATCTGGCTGAAATTC+GGG | - | chr3_1:89128583-89128602 | Msa0385590:intron | 45.0% | |
| CAATCCGATGCAATGCAAGT+AGG | + | chr3_1:89128725-89128744 | None:intergenic | 45.0% | |
| AAACCTGACCCAACTCATCA+TGG | + | chr3_1:89128758-89128777 | None:intergenic | 45.0% | |
| ACTTCTCTGCCTGGTCATAT+AGG | + | chr3_1:89128898-89128917 | None:intergenic | 45.0% | |
| TGAAGCACATTCAAACCAGC+AGG | - | chr3_1:89128940-89128959 | Msa0385590:intron | 45.0% | |
| GTCGTTATCTCTTCTACCTC+GGG | - | chr3_1:89129140-89129159 | Msa0385590:intron | 45.0% | |
| ! | GAATAGTCCGAATTTTCCCG+AGG | + | chr3_1:89129159-89129178 | None:intergenic | 45.0% |
| TGCATAAAGACAGTTCGCTC+AGG | + | chr3_1:89129310-89129329 | None:intergenic | 45.0% | |
| GTGTAGTGGTTAAGGGAGAT+AGG | + | chr3_1:89129464-89129483 | None:intergenic | 45.0% | |
| CTAGTCGGTGTAGTGGTTAA+GGG | + | chr3_1:89129471-89129490 | None:intergenic | 45.0% | |
| ACTAGTCGGTGTAGTGGTTA+AGG | + | chr3_1:89129472-89129491 | None:intergenic | 45.0% | |
| TGGGTGTACGTTAGCAAATC+CGG | - | chr3_1:89129747-89129766 | Msa0385590:CDS | 45.0% | |
| TTAGCACCCAACACGTTAGT+TGG | - | chr3_1:89129809-89129828 | Msa0385590:intron | 45.0% | |
| ACAATGTGAAGGAGGATGGT+TGG | + | chr3_1:89129953-89129972 | None:intergenic | 45.0% | |
| GATGACAATGTGAAGGAGGA+TGG | + | chr3_1:89129957-89129976 | None:intergenic | 45.0% | |
| AAATGGCACACCACAACACA+TGG | - | chr3_1:89130069-89130088 | Msa0385590:CDS | 45.0% | |
| ATCTCGGTCTATCTACAGAC+TGG | + | chr3_1:89130117-89130136 | None:intergenic | 45.0% | |
| !!! | GGGAAAAAGGCGCTTTTTTC+TGG | + | chr3_1:89130321-89130340 | None:intergenic | 45.0% |
| !!! | TTCCCTTCCGTTTTTTCCAC+TGG | - | chr3_1:89130336-89130355 | Msa0385590:CDS | 45.0% |
| !!! | TCCCTTCCGTTTTTTCCACT+GGG | - | chr3_1:89130337-89130356 | Msa0385590:CDS | 45.0% |
| TCCCAGTGGAAAAAACGGAA+GGG | + | chr3_1:89130341-89130360 | None:intergenic | 45.0% | |
| TTCCCAGTGGAAAAAACGGA+AGG | + | chr3_1:89130342-89130361 | None:intergenic | 45.0% | |
| AAAGGTTGACCACTAGGCTA+TGG | + | chr3_1:89130619-89130638 | None:intergenic | 45.0% | |
| TGCAAGAAAGGTTGACCACT+AGG | + | chr3_1:89130625-89130644 | None:intergenic | 45.0% | |
| GGGCCTAAATTGTGCAAGAA+AGG | + | chr3_1:89130637-89130656 | None:intergenic | 45.0% | |
| CACAGGTGGTAACTAACTCA+GGG | + | chr3_1:89130657-89130676 | None:intergenic | 45.0% | |
| ACAGCTCCAAATCTCCAATG+CGG | + | chr3_1:89130865-89130884 | None:intergenic | 45.0% | |
| GTCTCCGACATAATGTCATC+AGG | - | chr3_1:89130951-89130970 | Msa0385590:intron | 45.0% | |
| CGACATAATGTCATCAGGAC+TGG | - | chr3_1:89130956-89130975 | Msa0385590:intron | 45.0% | |
| AGCTAGTGAGATGCGAGAAT+AGG | + | chr3_1:89131002-89131021 | None:intergenic | 45.0% | |
| TCAGCATCAGCAACAGGATT+TGG | + | chr3_1:89131055-89131074 | None:intergenic | 45.0% | |
| !! | TGCTGAGAGCATTGTGTCAA+AGG | - | chr3_1:89131069-89131088 | Msa0385590:intron | 45.0% |
| GTGTCAAAGGCTATTCGTGA+TGG | - | chr3_1:89131082-89131101 | Msa0385590:intron | 45.0% | |
| GTCAAAGGCTATTCGTGATG+GGG | - | chr3_1:89131084-89131103 | Msa0385590:intron | 45.0% | |
| TGGGGCAATTGATGCTACAT+TGG | - | chr3_1:89131102-89131121 | Msa0385590:intron | 45.0% | |
| CATTGGATCATGCAAATGGG+TGG | - | chr3_1:89131119-89131138 | Msa0385590:intron | 45.0% | |
| AAATGGGTGGATGGTGTCTA+AGG | - | chr3_1:89131132-89131151 | Msa0385590:intron | 45.0% | |
| TGGATGGTGTCTAAGGAAAC+AGG | - | chr3_1:89131139-89131158 | Msa0385590:intron | 45.0% | |
| ACTGGCCAAACATATTGCAG+AGG | - | chr3_1:89131327-89131346 | Msa0385590:CDS | 45.0% | |
| TCACCCTACTAGTTGCAATC+GGG | - | chr3_1:89131385-89131404 | Msa0385590:CDS | 45.0% | |
| GATCCCGATTGCAACTAGTA+GGG | + | chr3_1:89131391-89131410 | None:intergenic | 45.0% | |
| AGATCCCGATTGCAACTAGT+AGG | + | chr3_1:89131392-89131411 | None:intergenic | 45.0% | |
| GGTCATTCAGAGTAACACCT+TGG | + | chr3_1:89131675-89131694 | None:intergenic | 45.0% | |
| !! | CCAAGCAATGCTGATTCAAC+AGG | + | chr3_1:89131696-89131715 | None:intergenic | 45.0% |
| CCTGTTGAATCAGCATTGCT+TGG | - | chr3_1:89131693-89131712 | Msa0385590:five_prime_UTR | 45.0% | |
| !! | AATATATAAGATTTATAAAT+AGG | + | chr3_1:89127354-89127373 | None:intergenic | 5.0% |
| !!! | TTAAATTTTTTATACAAATT+AGG | - | chr3_1:89127586-89127605 | Msa0385590:CDS | 5.0% |
| !!! | TTTTTTAATAAAGAAAAATT+GGG | + | chr3_1:89129843-89129862 | None:intergenic | 5.0% |
| !!! | AAATATATAAAATATTCTTT+TGG | + | chr3_1:89130680-89130699 | None:intergenic | 5.0% |
| ! | TGAGACCGGTTCTTACTCGA+AGG | - | chr3_1:89127136-89127155 | Msa0385590:three_prime_UTR | 50.0% |
| CTCGATCATGTTCTCACTCC+TGG | - | chr3_1:89127239-89127258 | Msa0385590:exon | 50.0% | |
| GGAGGATGATCATGAGATGG+AGG | - | chr3_1:89128234-89128253 | Msa0385590:intron | 50.0% | |
| GGATGATCATGAGATGGAGG+TGG | - | chr3_1:89128237-89128256 | Msa0385590:intron | 50.0% | |
| TGTAGGGGTAGGGGTTTGAA+TGG | + | chr3_1:89128278-89128297 | None:intergenic | 50.0% | |
| GTGTTTAGCTGTAGGGGTAG+GGG | + | chr3_1:89128287-89128306 | None:intergenic | 50.0% | |
| GGAGATCTGGCTGAAATTCG+GGG | - | chr3_1:89128584-89128603 | Msa0385590:intron | 50.0% | |
| GAGATCTGGCTGAAATTCGG+GGG | - | chr3_1:89128585-89128604 | Msa0385590:intron | 50.0% | |
| ACCCTTCGCCATGATGAGTT+GGG | - | chr3_1:89128747-89128766 | Msa0385590:intron | 50.0% | |
| ACCCAACTCATCATGGCGAA+GGG | + | chr3_1:89128751-89128770 | None:intergenic | 50.0% | |
| ATGACCAGGCAGAGAAGTTG+AGG | - | chr3_1:89128900-89128919 | Msa0385590:intron | 50.0% | |
| TTGACCTCAACTTCTCTGCC+TGG | + | chr3_1:89128907-89128926 | None:intergenic | 50.0% | |
| GGCAGAGAAGTTGAGGTCAA+AGG | - | chr3_1:89128907-89128926 | Msa0385590:intron | 50.0% | |
| GTAAAGCTCCAGTTGCAGCT+CGG | - | chr3_1:89129224-89129243 | Msa0385590:intron | 50.0% | |
| TAAAGCTCCAGTTGCAGCTC+GGG | - | chr3_1:89129225-89129244 | Msa0385590:intron | 50.0% | |
| AAGTGGTTGCATACGCCTTG+AGG | + | chr3_1:89129689-89129708 | None:intergenic | 50.0% | |
| GGGTGTACGTTAGCAAATCC+GGG | - | chr3_1:89129748-89129767 | Msa0385590:CDS | 50.0% | |
| GGGTGTGCAATAGCATTACC+CGG | + | chr3_1:89129769-89129788 | None:intergenic | 50.0% | |
| ATGTGAAGGAGGATGGTTGG+AGG | + | chr3_1:89129950-89129969 | None:intergenic | 50.0% | |
| ATCTCAAGGCCATAGCCTAG+TGG | - | chr3_1:89130607-89130626 | Msa0385590:intron | 50.0% | |
| GCACAGGTGGTAACTAACTC+AGG | + | chr3_1:89130658-89130677 | None:intergenic | 50.0% | |
| ATGAGTTCCGTCTGCACTGA+AGG | + | chr3_1:89130918-89130937 | None:intergenic | 50.0% | |
| ATGCTCTCAGCATCAGCAAC+AGG | + | chr3_1:89131061-89131080 | None:intergenic | 50.0% | |
| GGATCATGCAAATGGGTGGA+TGG | - | chr3_1:89131123-89131142 | Msa0385590:intron | 50.0% | |
| CGAGAATTGAAAGCCAGCTG+AGG | + | chr3_1:89131187-89131206 | None:intergenic | 50.0% | |
| AGAGAGACAACAGCAAGAGC+AGG | - | chr3_1:89131303-89131322 | Msa0385590:intron | 50.0% | |
| ACAACAGCAAGAGCAGGAAC+TGG | - | chr3_1:89131309-89131328 | Msa0385590:intron | 50.0% | |
| GGCCAAACATATTGCAGAGG+AGG | - | chr3_1:89131330-89131349 | Msa0385590:CDS | 50.0% | |
| CAACTCATCATGGCGAAGGG+TGG | + | chr3_1:89128748-89128767 | None:intergenic | 55.0% | |
| CACCCTTCGCCATGATGAGT+TGG | - | chr3_1:89128746-89128765 | Msa0385590:intron | 55.0% | |
| GACCCAACTCATCATGGCGA+AGG | + | chr3_1:89128752-89128771 | None:intergenic | 55.0% | |
| ! | TCGCCATGATGAGTTGGGTC+AGG | - | chr3_1:89128752-89128771 | Msa0385590:intron | 55.0% |
| GAGCTTTACGAGCAGCTTGC+AGG | + | chr3_1:89129213-89129232 | None:intergenic | 55.0% | |
| AAAGCTCCAGTTGCAGCTCG+GGG | - | chr3_1:89129226-89129245 | Msa0385590:intron | 55.0% | |
| GAATTCCAGGCTGTCCGCAT+TGG | - | chr3_1:89130848-89130867 | Msa0385590:intron | 55.0% | |
| AATCTCCAATGCGGACAGCC+TGG | + | chr3_1:89130856-89130875 | None:intergenic | 55.0% | |
| GGCTGTCCGCATTGGAGATT+TGG | - | chr3_1:89130856-89130875 | Msa0385590:intron | 55.0% | |
| GCAACCACCTTCAGTGCAGA+CGG | - | chr3_1:89130908-89130927 | Msa0385590:intron | 55.0% | |
| AGTTCCGTCTGCACTGAAGG+TGG | + | chr3_1:89130915-89130934 | None:intergenic | 55.0% | |
| GACAGAATGTGTCGCCCAGA+TGG | - | chr3_1:89131752-89131771 | Msa0385590:five_prime_UTR | 55.0% | |
| CGAAAACCCCGAGCTGCAAC+TGG | + | chr3_1:89129235-89129254 | None:intergenic | 60.0% | |
| CTCCACACATGAGCCTCAGC+TGG | - | chr3_1:89131171-89131190 | Msa0385590:intron | 60.0% | |
| AGCCAGCTGAGGCTCATGTG+TGG | + | chr3_1:89131176-89131195 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 89126817 | 89131802 | 89126817 | ID=Msa0385590;Name=Msa0385590 |
| chr3_1 | mRNA | 89126817 | 89131802 | 89126817 | ID=Msa0385590-mRNA-1;Parent=Msa0385590;Name=Msa0385590-mRNA-1;_AED=0.03;_eAED=0.03;_QI=131|1|1|1|1|1|8|433|490 |
| chr3_1 | exon | 89126817 | 89127762 | 89126817 | ID=Msa0385590-mRNA-1:exon:24239;Parent=Msa0385590-mRNA-1 |
| chr3_1 | exon | 89129244 | 89129483 | 89129244 | ID=Msa0385590-mRNA-1:exon:24238;Parent=Msa0385590-mRNA-1 |
| chr3_1 | exon | 89129658 | 89129768 | 89129658 | ID=Msa0385590-mRNA-1:exon:24237;Parent=Msa0385590-mRNA-1 |
| chr3_1 | exon | 89129846 | 89129900 | 89129846 | ID=Msa0385590-mRNA-1:exon:24236;Parent=Msa0385590-mRNA-1 |
| chr3_1 | exon | 89130013 | 89130149 | 89130013 | ID=Msa0385590-mRNA-1:exon:24235;Parent=Msa0385590-mRNA-1 |
| chr3_1 | exon | 89130238 | 89130384 | 89130238 | ID=Msa0385590-mRNA-1:exon:24234;Parent=Msa0385590-mRNA-1 |
| chr3_1 | exon | 89131318 | 89131508 | 89131318 | ID=Msa0385590-mRNA-1:exon:24233;Parent=Msa0385590-mRNA-1 |
| chr3_1 | exon | 89131593 | 89131802 | 89131593 | ID=Msa0385590-mRNA-1:exon:24232;Parent=Msa0385590-mRNA-1 |
| chr3_1 | five_prime_UTR | 89131672 | 89131802 | 89131672 | ID=Msa0385590-mRNA-1:five_prime_utr;Parent=Msa0385590-mRNA-1 |
| chr3_1 | CDS | 89131593 | 89131671 | 89131593 | ID=Msa0385590-mRNA-1:cds;Parent=Msa0385590-mRNA-1 |
| chr3_1 | CDS | 89131318 | 89131508 | 89131318 | ID=Msa0385590-mRNA-1:cds;Parent=Msa0385590-mRNA-1 |
| chr3_1 | CDS | 89130238 | 89130384 | 89130238 | ID=Msa0385590-mRNA-1:cds;Parent=Msa0385590-mRNA-1 |
| chr3_1 | CDS | 89130013 | 89130149 | 89130013 | ID=Msa0385590-mRNA-1:cds;Parent=Msa0385590-mRNA-1 |
| chr3_1 | CDS | 89129846 | 89129900 | 89129846 | ID=Msa0385590-mRNA-1:cds;Parent=Msa0385590-mRNA-1 |
| chr3_1 | CDS | 89129658 | 89129768 | 89129658 | ID=Msa0385590-mRNA-1:cds;Parent=Msa0385590-mRNA-1 |
| chr3_1 | CDS | 89129244 | 89129483 | 89129244 | ID=Msa0385590-mRNA-1:cds;Parent=Msa0385590-mRNA-1 |
| chr3_1 | CDS | 89127250 | 89127762 | 89127250 | ID=Msa0385590-mRNA-1:cds;Parent=Msa0385590-mRNA-1 |
| chr3_1 | three_prime_UTR | 89126817 | 89127249 | 89126817 | ID=Msa0385590-mRNA-1:three_prime_utr;Parent=Msa0385590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
