Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0439190 | XP_013447464.1 | 94.561 | 239 | 13 | 0 | 1 | 239 | 1 | 239 | 1.15e-165 | 467 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0439190 | sp|Q8LFP9|ABA4_ARATH | 62.304 | 191 | 71 | 1 | 44 | 234 | 31 | 220 | 5.88e-85 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0439190 | G7ZY14 | 94.561 | 239 | 13 | 0 | 1 | 239 | 1 | 239 | 5.50e-166 | 467 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0439190 | Msa1012310 | 0.992306 | 1.660696e-192 | -8.615850e-47 |
| Msa0439190 | Msa1012380 | 0.909284 | 6.753326e-82 | -8.615850e-47 |
| Msa0439190 | Msa1091520 | 0.806061 | 9.876847e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0439190 | MtrunA17_Chr7g0215461 | 94.561 | 239 | 13 | 0 | 1 | 239 | 1 | 239 | 1.06e-169 | 467 |
| Msa0439190 | MtrunA17_Chr6g0460091 | 71.163 | 215 | 56 | 2 | 31 | 239 | 10 | 224 | 2.37e-107 | 308 |
| Msa0439190 | MtrunA17_Chr6g0457611 | 64.082 | 245 | 73 | 3 | 1 | 239 | 1 | 236 | 7.45e-107 | 308 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0439190 | AT1G67080.1 | 62.304 | 191 | 71 | 1 | 44 | 234 | 31 | 220 | 5.97e-86 | 254 |
| Msa0439190 | AT1G67080.2 | 56.303 | 119 | 51 | 1 | 44 | 162 | 31 | 148 | 1.25e-41 | 140 |
Find 61 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATTTGCTGTGCCTTTCT+TGG | 0.147302 | 3_3:+4691763 | Msa0439190:CDS |
| CTCTGCTTGGATTCACCTTT+TGG | 0.175390 | 3_3:+4691976 | Msa0439190:CDS |
| AAAATCAATCGAACTGTTTC+AGG | 0.226425 | 3_3:-4691789 | None:intergenic |
| AAACGTACCAGATCGGATTT+TGG | 0.231509 | 3_3:-4691521 | None:intergenic |
| TACATTCAAACTCGTGTTTC+GGG | 0.234242 | 3_3:-4692916 | None:intergenic |
| CGAACCGATCTTGTAGCTTT+TGG | 0.236227 | 3_3:-4690561 | None:intergenic |
| AAGGGTTGTACCTTATTAAA+TGG | 0.248376 | 3_3:-4689570 | None:intergenic |
| TTCACCATTACCATTTAATA+AGG | 0.254760 | 3_3:+4689560 | Msa0439190:CDS |
| ATGAATATGAAGCTGAAATT+TGG | 0.275042 | 3_3:-4689443 | None:intergenic |
| AGTGGAGATTGGAGTTTCAT+AGG | 0.317626 | 3_3:+4690516 | Msa0439190:CDS |
| GATTCAGTTTAAGTGGAGAT+TGG | 0.341492 | 3_3:+4690505 | Msa0439190:CDS |
| AATATTAGTTGTAATTTCAT+TGG | 0.343241 | 3_3:+4692729 | Msa0439190:three_prime_UTR |
| TCGTGTTTCGGGTGGAGAAA+TGG | 0.348941 | 3_3:-4692905 | None:intergenic |
| GTACATTCAAACTCGTGTTT+CGG | 0.365449 | 3_3:-4692917 | None:intergenic |
| TGACTTTGAATGTTCACATT+TGG | 0.367584 | 3_3:+4692987 | Msa0439190:three_prime_UTR |
| CTCAATGTTGCAGGGTTCAT+AGG | 0.368762 | 3_3:+4691422 | Msa0439190:intron |
| TTTCTGATATCAAAAGAGAT+TGG | 0.374873 | 3_3:-4692820 | None:intergenic |
| AGAAGTAGATTCAGTTTAAG+TGG | 0.379934 | 3_3:+4690498 | Msa0439190:CDS |
| TGAATGTACATTCAGAAAAC+AGG | 0.393017 | 3_3:+4692931 | Msa0439190:three_prime_UTR |
| ATCAAATTGAAGCATTAAAC+AGG | 0.398350 | 3_3:+4692874 | Msa0439190:three_prime_UTR |
| TCTACTTCTCGAAATGTGTT+TGG | 0.403637 | 3_3:-4690484 | None:intergenic |
| ATCAAACAAAATACATGTAT+AGG | 0.419081 | 3_3:-4692686 | None:intergenic |
| TCATGTTGGAAGTCGAGAAA+TGG | 0.431456 | 3_3:-4692967 | None:intergenic |
| TTCTGATATCAAAAGAGATT+GGG | 0.435030 | 3_3:-4692819 | None:intergenic |
| CGTGTTTCGGGTGGAGAAAT+GGG | 0.435955 | 3_3:-4692904 | None:intergenic |
| TTCCTAGCACTGTATTTACA+TGG | 0.448057 | 3_3:+4691453 | Msa0439190:CDS |
| AGTTGACTTTAGCCTCTGCT+TGG | 0.453787 | 3_3:+4691963 | Msa0439190:CDS |
| GAACCATAAGGGTGTAAAAC+GGG | 0.460581 | 3_3:-4691493 | None:intergenic |
| AGATGGTCATGGTTTATAGA+TGG | 0.462348 | 3_3:+4692661 | Msa0439190:exon |
| TGTACCTTATTAAATGGTAA+TGG | 0.465204 | 3_3:-4689564 | None:intergenic |
| ACATGAGTAAGAATCCCAAT+TGG | 0.470965 | 3_3:-4692605 | None:intergenic |
| CCTTTCTCTATCAGGAGTGA+TGG | 0.472888 | 3_3:+4690456 | Msa0439190:CDS |
| TAAAACTCTGTAGGACAGTT+GGG | 0.479095 | 3_3:+4690415 | Msa0439190:CDS |
| ACCAAAACTACAAGAAAAGA+TGG | 0.507075 | 3_3:+4692644 | Msa0439190:CDS |
| ATAAAACTCTGTAGGACAGT+TGG | 0.510520 | 3_3:+4690414 | Msa0439190:CDS |
| CTGTTTCAGGTGTCCAAGAA+AGG | 0.512995 | 3_3:-4691776 | None:intergenic |
| AGAATGCCGAGCACTACATA+TGG | 0.521426 | 3_3:-4691735 | None:intergenic |
| CCATCACTCCTGATAGAGAA+AGG | 0.526576 | 3_3:-4690456 | None:intergenic |
| TGGGCAAAAGAACAAGCAAA+AGG | 0.529473 | 3_3:-4692585 | None:intergenic |
| TCTAGCCCCAAAATCCGATC+TGG | 0.530853 | 3_3:+4691514 | Msa0439190:CDS |
| CATGAGTAAGAATCCCAATT+GGG | 0.537813 | 3_3:-4692604 | None:intergenic |
| GTGAACATTCAAAGTCATGT+TGG | 0.541816 | 3_3:-4692981 | None:intergenic |
| CCCCATGTAAATACAGTGCT+AGG | 0.554898 | 3_3:-4691455 | None:intergenic |
| TCCTAGCACTGTATTTACAT+GGG | 0.556570 | 3_3:+4691454 | Msa0439190:CDS |
| TCCTTGCAGCTTTCTAGCAT+AGG | 0.568671 | 3_3:+4691923 | Msa0439190:intron |
| AGAACCATAAGGGTGTAAAA+CGG | 0.570175 | 3_3:-4691494 | None:intergenic |
| AGTTTACCATATGTAGTGCT+CGG | 0.572021 | 3_3:+4691729 | Msa0439190:CDS |
| TATTCATATATATGAAGAAG+TGG | 0.572941 | 3_3:+4689459 | Msa0439190:five_prime_UTR |
| TCCAGGCATATATTTCATGA+TGG | 0.581090 | 3_3:+4692527 | Msa0439190:intron |
| CAGAAAGAAACGTACCAGAT+CGG | 0.600587 | 3_3:-4691528 | None:intergenic |
| ATTCAAACTCGTGTTTCGGG+TGG | 0.604313 | 3_3:-4692913 | None:intergenic |
| AACAACAGATTCAGCAACAA+TGG | 0.604765 | 3_3:-4689482 | None:intergenic |
| GGAGATTGGAGTTTCATAGG+AGG | 0.615543 | 3_3:+4690519 | Msa0439190:CDS |
| CCTAGCACTGTATTTACATG+GGG | 0.616641 | 3_3:+4691455 | Msa0439190:CDS |
| GAGATTGGAGTTTCATAGGA+GGG | 0.616886 | 3_3:+4690520 | Msa0439190:CDS |
| ACTACAAGAAAAGATGGTCA+TGG | 0.623185 | 3_3:+4692650 | Msa0439190:CDS |
| AAAACCAAAAGCTACAAGAT+CGG | 0.627640 | 3_3:+4690557 | Msa0439190:CDS |
| CAAAAGGTGAATCCAAGCAG+AGG | 0.662634 | 3_3:-4691975 | None:intergenic |
| TGAAGAATCAGATTGAAACT+CGG | 0.677130 | 3_3:+4692552 | Msa0439190:CDS |
| GGCAGGATATAAAACTCTGT+AGG | 0.684612 | 3_3:+4690406 | Msa0439190:intron |
| GAGTAAATACTTACTACCTG+AGG | 0.725135 | 3_3:+4691815 | Msa0439190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTGATTTATAATCATTT+GGG | + | chr3_3:4690384-4690403 | Msa0439190:intron | 10.0% |
| !!! | TATATTTATCTTATCTTTTT+TGG | + | chr3_3:4690794-4690813 | Msa0439190:intron | 10.0% |
| !! | ATTTGTGTAAAATCAAAAAA+AGG | - | chr3_3:4689645-4689664 | None:intergenic | 15.0% |
| !!! | TTTTTTTGATTTTACACAAA+TGG | + | chr3_3:4689644-4689663 | Msa0439190:intron | 15.0% |
| !!! | TTTTTTGATTTTACACAAAT+GGG | + | chr3_3:4689645-4689664 | Msa0439190:intron | 15.0% |
| !!! | TTGTTTAAAACAAAACAAAT+AGG | + | chr3_3:4690136-4690155 | Msa0439190:intron | 15.0% |
| !!! | CATATTGATTTATAATCATT+TGG | + | chr3_3:4690383-4690402 | Msa0439190:intron | 15.0% |
| !!! | TATTGATTTATAATCATTTG+GGG | + | chr3_3:4690385-4690404 | Msa0439190:intron | 15.0% |
| !! | AACAAACAATAAAATAAAGT+TGG | - | chr3_3:4691033-4691052 | None:intergenic | 15.0% |
| !! | TAATTTCAGAAAAATTAATC+AGG | - | chr3_3:4691678-4691697 | None:intergenic | 15.0% |
| !! | AATATTAGTTGTAATTTCAT+TGG | + | chr3_3:4692729-4692748 | Msa0439190:three_prime_UTR | 15.0% |
| !! | TATTCATATATATGAAGAAG+TGG | + | chr3_3:4689459-4689478 | Msa0439190:five_prime_UTR | 20.0% |
| !! | TACAAAACAAAACAATGAAA+GGG | - | chr3_3:4689591-4689610 | None:intergenic | 20.0% |
| !! | TTACAAAACAAAACAATGAA+AGG | - | chr3_3:4689592-4689611 | None:intergenic | 20.0% |
| !!! | TTTTTGATTTTACACAAATG+GGG | + | chr3_3:4689646-4689665 | Msa0439190:intron | 20.0% |
| !! | TTTGTAATAGATTTGATGTT+AGG | + | chr3_3:4689822-4689841 | Msa0439190:intron | 20.0% |
| !!! | AAATCTTCAATTTTAAGTGT+CGG | - | chr3_3:4690216-4690235 | None:intergenic | 20.0% |
| !! | AGTTTATTTATTCGTATGTA+TGG | + | chr3_3:4690315-4690334 | Msa0439190:intron | 20.0% |
| !!! | TTTTTCATGTAATCTAGAAT+TGG | + | chr3_3:4690637-4690656 | Msa0439190:intron | 20.0% |
| !! | AATTTACCATTCAATAGAAT+TGG | + | chr3_3:4690681-4690700 | Msa0439190:intron | 20.0% |
| !!! | ATTTATCTTATCTTTTTTGG+CGG | + | chr3_3:4690797-4690816 | Msa0439190:intron | 20.0% |
| !!! | AAACTATCTTAAAGCATTTA+AGG | - | chr3_3:4690977-4690996 | None:intergenic | 20.0% |
| !!! | CTCTATTCTTTTTAAGTTTT+TGG | + | chr3_3:4691135-4691154 | Msa0439190:intron | 20.0% |
| !! | ACATGAATAATTGTAGAAAA+GGG | - | chr3_3:4691203-4691222 | None:intergenic | 20.0% |
| !! | CAAAAGAATAACAGAAAATT+AGG | - | chr3_3:4691253-4691272 | None:intergenic | 20.0% |
| !!! | ACAATTCATATTCAGTTTTT+AGG | + | chr3_3:4691587-4691606 | Msa0439190:intron | 20.0% |
| !!! | TCCTTTTCATTTCATTTATT+TGG | + | chr3_3:4691637-4691656 | Msa0439190:intron | 20.0% |
| !! | ACCAAATAAATGAAATGAAA+AGG | - | chr3_3:4691641-4691660 | None:intergenic | 20.0% |
| !! | TTTAGATGTTCAAATATACA+TGG | + | chr3_3:4692272-4692291 | Msa0439190:intron | 20.0% |
| !! | AATATAATTGGGATGATTAA+TGG | - | chr3_3:4692301-4692320 | None:intergenic | 20.0% |
| !! | TGAAGATCATGAATATAATT+GGG | - | chr3_3:4692312-4692331 | None:intergenic | 20.0% |
| !! | ATCAAACAAAATACATGTAT+AGG | - | chr3_3:4692689-4692708 | None:intergenic | 20.0% |
| !!! | GTATTTTGTTTGATGAATTT+AGG | + | chr3_3:4692695-4692714 | Msa0439190:three_prime_UTR | 20.0% |
| !!! | AATTTCATTGGTACATTTTT+TGG | + | chr3_3:4692741-4692760 | Msa0439190:three_prime_UTR | 20.0% |
| ! | GAGAAAAAGTTAGCTAAAAT+TGG | - | chr3_3:4689414-4689433 | None:intergenic | 25.0% |
| ! | ATGAATATGAAGCTGAAATT+TGG | - | chr3_3:4689446-4689465 | None:intergenic | 25.0% |
| ! | TTCACCATTACCATTTAATA+AGG | + | chr3_3:4689560-4689579 | Msa0439190:CDS | 25.0% |
| ! | TGTACCTTATTAAATGGTAA+TGG | - | chr3_3:4689567-4689586 | None:intergenic | 25.0% |
| !!! | TCTGCATTTTTTGTCTTTTT+TGG | + | chr3_3:4689617-4689636 | Msa0439190:intron | 25.0% |
| ! | ATTTCACATTAGTAATGCAT+TGG | - | chr3_3:4689754-4689773 | None:intergenic | 25.0% |
| ! | AATGCATTACTAATGTGAAA+TGG | + | chr3_3:4689753-4689772 | Msa0439190:intron | 25.0% |
| ! | ATGCATTACTAATGTGAAAT+GGG | + | chr3_3:4689754-4689773 | Msa0439190:intron | 25.0% |
| ! | TGATATGTTATAATGCATGT+TGG | + | chr3_3:4689987-4690006 | Msa0439190:intron | 25.0% |
| !!! | TTTTGTTTTAAACAACCTAG+CGG | - | chr3_3:4690131-4690150 | None:intergenic | 25.0% |
| ! | GAGTTTGTATTTCAAAAAGT+TGG | + | chr3_3:4690158-4690177 | Msa0439190:intron | 25.0% |
| !!! | TTTTGGTTTTACAACAATTC+TGG | - | chr3_3:4690547-4690566 | None:intergenic | 25.0% |
| ! | TGAAAAAGTAGCATGAAAAA+AGG | - | chr3_3:4690624-4690643 | None:intergenic | 25.0% |
| !!! | TGAGCATAATGGATATATTT+AGG | + | chr3_3:4690717-4690736 | Msa0439190:intron | 25.0% |
| ! | CACATGAATAATTGTAGAAA+AGG | - | chr3_3:4691204-4691223 | None:intergenic | 25.0% |
| !! | CTTTTCTACAATTATTCATG+TGG | + | chr3_3:4691202-4691221 | Msa0439190:intron | 25.0% |
| ! | TAACAATCTATTCGATTCAA+TGG | - | chr3_3:4691322-4691341 | None:intergenic | 25.0% |
| ! | AATTGCTTGTTCTGTATAAA+TGG | + | chr3_3:4691380-4691399 | Msa0439190:intron | 25.0% |
| ! | AATATAGACCAAAAAGTCTA+TGG | + | chr3_3:4691701-4691720 | Msa0439190:intron | 25.0% |
| !! | AAGGAGTATGCAAATATAAA+CGG | - | chr3_3:4691908-4691927 | None:intergenic | 25.0% |
| ! | ACAAAAAATCGAGAACAATT+TGG | + | chr3_3:4692116-4692135 | Msa0439190:intron | 25.0% |
| ! | TTTGAACATCTAAAAACCAT+TGG | - | chr3_3:4692266-4692285 | None:intergenic | 25.0% |
| ! | CTGAAGATCATGAATATAAT+TGG | - | chr3_3:4692313-4692332 | None:intergenic | 25.0% |
| ! | CAATTATATTCATGATCTTC+AGG | + | chr3_3:4692311-4692330 | Msa0439190:intron | 25.0% |
| ! | TAACACAGATTAACAGATTA+TGG | - | chr3_3:4692365-4692384 | None:intergenic | 25.0% |
| ! | ATTAATGACATTCAAAACTG+TGG | + | chr3_3:4692418-4692437 | Msa0439190:intron | 25.0% |
| !! | TATTTCTCTGACAGTATTTT+TGG | + | chr3_3:4692497-4692516 | Msa0439190:intron | 25.0% |
| ! | TTCTGATATCAAAAGAGATT+GGG | - | chr3_3:4692822-4692841 | None:intergenic | 25.0% |
| ! | TTTCTGATATCAAAAGAGAT+TGG | - | chr3_3:4692823-4692842 | None:intergenic | 25.0% |
| !! | ATCTCTTTTGATATCAGAAA+TGG | + | chr3_3:4692823-4692842 | Msa0439190:three_prime_UTR | 25.0% |
| !! | ATCAAATTGAAGCATTAAAC+AGG | + | chr3_3:4692874-4692893 | Msa0439190:three_prime_UTR | 25.0% |
| AAGGGTTGTACCTTATTAAA+TGG | - | chr3_3:4689573-4689592 | None:intergenic | 30.0% | |
| CAGAGAAATTTGATATGTTG+TGG | + | chr3_3:4690050-4690069 | Msa0439190:intron | 30.0% | |
| TGCTAAGAAGTTGAAAATGA+GGG | - | chr3_3:4690088-4690107 | None:intergenic | 30.0% | |
| ! | ATTTTCAACTTCTTAGCACT+TGG | + | chr3_3:4690090-4690109 | Msa0439190:intron | 30.0% |
| ! | TGAATTTTCCTTTCTCTATC+AGG | + | chr3_3:4690448-4690467 | Msa0439190:CDS | 30.0% |
| AGAAGTAGATTCAGTTTAAG+TGG | + | chr3_3:4690498-4690517 | Msa0439190:CDS | 30.0% | |
| AAAACCAAAAGCTACAAGAT+CGG | + | chr3_3:4690557-4690576 | Msa0439190:CDS | 30.0% | |
| !! | GTATTTGACTTCTTTTTGGA+TGG | - | chr3_3:4690587-4690606 | None:intergenic | 30.0% |
| !! | GCATGTATTTGACTTCTTTT+TGG | - | chr3_3:4690591-4690610 | None:intergenic | 30.0% |
| ! | GGTTCTTTTGCAAAAATTGT+TGG | + | chr3_3:4690738-4690757 | Msa0439190:intron | 30.0% |
| CAAAAATTGTTGGATCTGTA+AGG | + | chr3_3:4690748-4690767 | Msa0439190:intron | 30.0% | |
| TCGTAAAGTAGGTTACTATT+AGG | + | chr3_3:4690825-4690844 | Msa0439190:intron | 30.0% | |
| CGTAAAGTAGGTTACTATTA+GGG | + | chr3_3:4690826-4690845 | Msa0439190:intron | 30.0% | |
| !! | AAGTTTTTGGAGACAAGTTA+TGG | + | chr3_3:4691148-4691167 | Msa0439190:intron | 30.0% |
| ! | ACTACTTTCCATAGACTTTT+TGG | - | chr3_3:4691712-4691731 | None:intergenic | 30.0% |
| AAAATCAATCGAACTGTTTC+AGG | - | chr3_3:4691792-4691811 | None:intergenic | 30.0% | |
| CAAAAAGATCAACAACCAAA+AGG | - | chr3_3:4691994-4692013 | None:intergenic | 30.0% | |
| GAAATCACAAAAGATACAAC+AGG | - | chr3_3:4692026-4692045 | None:intergenic | 30.0% | |
| TTGGATAATTAATGCCGTTA+AGG | + | chr3_3:4692135-4692154 | Msa0439190:intron | 30.0% | |
| AATGCAATTAACCCTGAATT+TGG | + | chr3_3:4692230-4692249 | Msa0439190:intron | 30.0% | |
| AAACTATACACATGATATCG+TGG | + | chr3_3:4692384-4692403 | Msa0439190:intron | 30.0% | |
| !!! | GTATTTTTGGTTCAAAATCC+AGG | + | chr3_3:4692510-4692529 | Msa0439190:intron | 30.0% |
| TGAAGAATCAGATTGAAACT+CGG | + | chr3_3:4692552-4692571 | Msa0439190:CDS | 30.0% | |
| ACCAAAACTACAAGAAAAGA+TGG | + | chr3_3:4692644-4692663 | Msa0439190:CDS | 30.0% | |
| ! | ACCATCTTTTCTTGTAGTTT+TGG | - | chr3_3:4692648-4692667 | None:intergenic | 30.0% |
| TGAATGTACATTCAGAAAAC+AGG | + | chr3_3:4692931-4692950 | Msa0439190:three_prime_UTR | 30.0% | |
| TGACTTTGAATGTTCACATT+TGG | + | chr3_3:4692987-4693006 | Msa0439190:three_prime_UTR | 30.0% | |
| AACAACAGATTCAGCAACAA+TGG | - | chr3_3:4689485-4689504 | None:intergenic | 35.0% | |
| ATTTGATGTTAGGTGCATGT+TGG | + | chr3_3:4689832-4689851 | Msa0439190:intron | 35.0% | |
| TGTTTGTGTAAGTGCTTCAT+AGG | + | chr3_3:4689899-4689918 | Msa0439190:intron | 35.0% | |
| AGTGCTTCATAGGCAATAAA+AGG | + | chr3_3:4689909-4689928 | Msa0439190:intron | 35.0% | |
| GTGCTTCATAGGCAATAAAA+GGG | + | chr3_3:4689910-4689929 | Msa0439190:intron | 35.0% | |
| CCATATGAGTTATACTTACG+CGG | - | chr3_3:4689947-4689966 | None:intergenic | 35.0% | |
| CTGCAACATTCTATCATATG+AGG | - | chr3_3:4690033-4690052 | None:intergenic | 35.0% | |
| AATTTGATATGTTGTGGCGT+CGG | + | chr3_3:4690056-4690075 | Msa0439190:intron | 35.0% | |
| GCTAAGAAGTTGAAAATGAG+GGG | - | chr3_3:4690087-4690106 | None:intergenic | 35.0% | |
| GTGCTAAGAAGTTGAAAATG+AGG | - | chr3_3:4690089-4690108 | None:intergenic | 35.0% | |
| TTGTGTCATCAAACCAACTT+TGG | + | chr3_3:4690186-4690205 | Msa0439190:intron | 35.0% | |
| TTGAAGATTTGTCCAGTGTT+TGG | + | chr3_3:4690226-4690245 | Msa0439190:intron | 35.0% | |
| ! | GATTTATAATCATTTGGGGC+AGG | + | chr3_3:4690389-4690408 | Msa0439190:intron | 35.0% |
| ATAAAACTCTGTAGGACAGT+TGG | + | chr3_3:4690414-4690433 | Msa0439190:CDS | 35.0% | |
| TAAAACTCTGTAGGACAGTT+GGG | + | chr3_3:4690415-4690434 | Msa0439190:CDS | 35.0% | |
| TCTACTTCTCGAAATGTGTT+TGG | - | chr3_3:4690487-4690506 | None:intergenic | 35.0% | |
| GATTCAGTTTAAGTGGAGAT+TGG | + | chr3_3:4690505-4690524 | Msa0439190:CDS | 35.0% | |
| TCACAGCCAATTCTATTGAA+TGG | - | chr3_3:4690690-4690709 | None:intergenic | 35.0% | |
| TTCAATAGAATTGGCTGTGA+AGG | + | chr3_3:4690690-4690709 | Msa0439190:intron | 35.0% | |
| GTGAAGGAATTTGAGCATAA+TGG | + | chr3_3:4690706-4690725 | Msa0439190:intron | 35.0% | |
| AAGTCTCAAACAGTCTTACT+AGG | - | chr3_3:4690895-4690914 | None:intergenic | 35.0% | |
| CTAAGCTGTTTATCCAAACA+GGG | + | chr3_3:4691096-4691115 | Msa0439190:intron | 35.0% | |
| GAAAAGGGAATACATGCAAA+AGG | - | chr3_3:4691188-4691207 | None:intergenic | 35.0% | |
| AGCCTTGAACAAACACATTT+AGG | + | chr3_3:4691290-4691309 | Msa0439190:intron | 35.0% | |
| GACCTAAATGTGTTTGTTCA+AGG | - | chr3_3:4691295-4691314 | None:intergenic | 35.0% | |
| TGCTTGTTCTGTATAAATGG+TGG | + | chr3_3:4691383-4691402 | Msa0439190:intron | 35.0% | |
| !! | TTGTTTTACCTCAATGTTGC+AGG | + | chr3_3:4691413-4691432 | Msa0439190:intron | 35.0% |
| ! | TGTTTTACCTCAATGTTGCA+GGG | + | chr3_3:4691414-4691433 | Msa0439190:intron | 35.0% |
| TTCCTAGCACTGTATTTACA+TGG | + | chr3_3:4691453-4691472 | Msa0439190:CDS | 35.0% | |
| TCCTAGCACTGTATTTACAT+GGG | + | chr3_3:4691454-4691473 | Msa0439190:CDS | 35.0% | |
| ! | AGAACCATAAGGGTGTAAAA+CGG | - | chr3_3:4691497-4691516 | None:intergenic | 35.0% |
| AGTTTACCATATGTAGTGCT+CGG | + | chr3_3:4691729-4691748 | Msa0439190:CDS | 35.0% | |
| GAGTAAATACTTACTACCTG+AGG | + | chr3_3:4691815-4691834 | Msa0439190:CDS | 35.0% | |
| ! | TTGTTGATCTTTTTGCTGCA+AGG | + | chr3_3:4691999-4692018 | Msa0439190:CDS | 35.0% |
| CAGCAATAACGAGGAAAATT+GGG | - | chr3_3:4692056-4692075 | None:intergenic | 35.0% | |
| ATGAAAAACCAGCAATAACG+AGG | - | chr3_3:4692065-4692084 | None:intergenic | 35.0% | |
| ! | ATTAATGCCGTTAAGGTATC+TGG | + | chr3_3:4692142-4692161 | Msa0439190:intron | 35.0% |
| ATCTGGTTGATCGTATTAAG+TGG | + | chr3_3:4692159-4692178 | Msa0439190:intron | 35.0% | |
| GTCACAACTCATTAATCATC+CGG | + | chr3_3:4692205-4692224 | Msa0439190:intron | 35.0% | |
| TCAGGGTTAATTGCATTAAC+CGG | - | chr3_3:4692227-4692246 | None:intergenic | 35.0% | |
| GTTTATGACGTCCAAATTCA+GGG | - | chr3_3:4692244-4692263 | None:intergenic | 35.0% | |
| ATTTGGACGTCATAAACCAA+TGG | + | chr3_3:4692247-4692266 | Msa0439190:intron | 35.0% | |
| TCCAGGCATATATTTCATGA+TGG | + | chr3_3:4692527-4692546 | Msa0439190:intron | 35.0% | |
| TCCATCATGAAATATATGCC+TGG | - | chr3_3:4692531-4692550 | None:intergenic | 35.0% | |
| CATGAGTAAGAATCCCAATT+GGG | - | chr3_3:4692607-4692626 | None:intergenic | 35.0% | |
| ACATGAGTAAGAATCCCAAT+TGG | - | chr3_3:4692608-4692627 | None:intergenic | 35.0% | |
| !!! | TGTAGTTTTGGTCATTGCTT+TGG | - | chr3_3:4692636-4692655 | None:intergenic | 35.0% |
| ACTACAAGAAAAGATGGTCA+TGG | + | chr3_3:4692650-4692669 | Msa0439190:CDS | 35.0% | |
| AGATGGTCATGGTTTATAGA+TGG | + | chr3_3:4692661-4692680 | Msa0439190:exon | 35.0% | |
| TACATTCAAACTCGTGTTTC+GGG | - | chr3_3:4692919-4692938 | None:intergenic | 35.0% | |
| GTACATTCAAACTCGTGTTT+CGG | - | chr3_3:4692920-4692939 | None:intergenic | 35.0% | |
| GTGAACATTCAAAGTCATGT+TGG | - | chr3_3:4692984-4693003 | None:intergenic | 35.0% | |
| CCGCGTAAGTATAACTCATA+TGG | + | chr3_3:4689944-4689963 | Msa0439190:intron | 40.0% | |
| TCAACTTCTTAGCACTTGGT+TGG | + | chr3_3:4690094-4690113 | Msa0439190:intron | 40.0% | |
| TTCAATGTAACCGCATATGC+CGG | - | chr3_3:4690271-4690290 | None:intergenic | 40.0% | |
| GGCAGGATATAAAACTCTGT+AGG | + | chr3_3:4690406-4690425 | Msa0439190:intron | 40.0% | |
| AGTGGAGATTGGAGTTTCAT+AGG | + | chr3_3:4690516-4690535 | Msa0439190:CDS | 40.0% | |
| GAGATTGGAGTTTCATAGGA+GGG | + | chr3_3:4690520-4690539 | Msa0439190:CDS | 40.0% | |
| GGTTACTATTAGGGCATGTT+TGG | + | chr3_3:4690835-4690854 | Msa0439190:intron | 40.0% | |
| GCTAAGCTGTTTATCCAAAC+AGG | + | chr3_3:4691095-4691114 | Msa0439190:intron | 40.0% | |
| AGAAAAGACAAGACCCTGTT+TGG | - | chr3_3:4691112-4691131 | None:intergenic | 40.0% | |
| CCTAGCACTGTATTTACATG+GGG | + | chr3_3:4691455-4691474 | Msa0439190:CDS | 40.0% | |
| ! | GAACCATAAGGGTGTAAAAC+GGG | - | chr3_3:4691496-4691515 | None:intergenic | 40.0% |
| !!! | TTTTGGGGCTAGAACCATAA+GGG | - | chr3_3:4691507-4691526 | None:intergenic | 40.0% |
| !!! | ATTTTGGGGCTAGAACCATA+AGG | - | chr3_3:4691508-4691527 | None:intergenic | 40.0% |
| ! | AACGTACCAGATCGGATTTT+GGG | - | chr3_3:4691523-4691542 | None:intergenic | 40.0% |
| ! | AAACGTACCAGATCGGATTT+TGG | - | chr3_3:4691524-4691543 | None:intergenic | 40.0% |
| CAGAAAGAAACGTACCAGAT+CGG | - | chr3_3:4691531-4691550 | None:intergenic | 40.0% | |
| !! | CTTATTTGCTGTGCCTTTCT+TGG | + | chr3_3:4691763-4691782 | Msa0439190:CDS | 40.0% |
| GATGAATGAATACACACCTC+AGG | - | chr3_3:4691834-4691853 | None:intergenic | 40.0% | |
| CCAGCAATAACGAGGAAAAT+TGG | - | chr3_3:4692057-4692076 | None:intergenic | 40.0% | |
| ! | CCAATTTTCCTCGTTATTGC+TGG | + | chr3_3:4692054-4692073 | Msa0439190:intron | 40.0% |
| CGATCAACCAGATACCTTAA+CGG | - | chr3_3:4692152-4692171 | None:intergenic | 40.0% | |
| GGTTGATCGTATTAAGTGGT+TGG | + | chr3_3:4692163-4692182 | Msa0439190:intron | 40.0% | |
| GGTTTATGACGTCCAAATTC+AGG | - | chr3_3:4692245-4692264 | None:intergenic | 40.0% | |
| TGGGCAAAAGAACAAGCAAA+AGG | - | chr3_3:4692588-4692607 | None:intergenic | 40.0% | |
| ! | TGCTTGTTCTTTTGCCCAAT+TGG | + | chr3_3:4692590-4692609 | Msa0439190:CDS | 40.0% |
| ! | GCTTGTTCTTTTGCCCAATT+GGG | + | chr3_3:4692591-4692610 | Msa0439190:CDS | 40.0% |
| TCATGTTGGAAGTCGAGAAA+TGG | - | chr3_3:4692970-4692989 | None:intergenic | 40.0% | |
| CCATCACTCCTGATAGAGAA+AGG | - | chr3_3:4690459-4690478 | None:intergenic | 45.0% | |
| CCTTTCTCTATCAGGAGTGA+TGG | + | chr3_3:4690456-4690475 | Msa0439190:CDS | 45.0% | |
| GGAGATTGGAGTTTCATAGG+AGG | + | chr3_3:4690519-4690538 | Msa0439190:CDS | 45.0% | |
| ! | CGAACCGATCTTGTAGCTTT+TGG | - | chr3_3:4690564-4690583 | None:intergenic | 45.0% |
| TGGCGGCATTATCGTAAAGT+AGG | + | chr3_3:4690814-4690833 | Msa0439190:intron | 45.0% | |
| ! | GACTGTTTGAGACTTGAGAG+AGG | + | chr3_3:4690900-4690919 | Msa0439190:intron | 45.0% |
| ACTCGAATAGCTGAGATCAG+CGG | - | chr3_3:4691228-4691247 | None:intergenic | 45.0% | |
| CTATGAACCCTGCAACATTG+AGG | - | chr3_3:4691424-4691443 | None:intergenic | 45.0% | |
| CTCAATGTTGCAGGGTTCAT+AGG | + | chr3_3:4691422-4691441 | Msa0439190:intron | 45.0% | |
| CCCCATGTAAATACAGTGCT+AGG | - | chr3_3:4691458-4691477 | None:intergenic | 45.0% | |
| ! | ACGTACCAGATCGGATTTTG+GGG | - | chr3_3:4691522-4691541 | None:intergenic | 45.0% |
| AGAATGCCGAGCACTACATA+TGG | - | chr3_3:4691738-4691757 | None:intergenic | 45.0% | |
| ! | CTGTTTCAGGTGTCCAAGAA+AGG | - | chr3_3:4691779-4691798 | None:intergenic | 45.0% |
| ! | TCCTTGCAGCTTTCTAGCAT+AGG | + | chr3_3:4691923-4691942 | Msa0439190:intron | 45.0% |
| TCCTATGCTAGAAAGCTGCA+AGG | - | chr3_3:4691927-4691946 | None:intergenic | 45.0% | |
| ! | AGTTGACTTTAGCCTCTGCT+TGG | + | chr3_3:4691963-4691982 | Msa0439190:CDS | 45.0% |
| CAAAAGGTGAATCCAAGCAG+AGG | - | chr3_3:4691978-4691997 | None:intergenic | 45.0% | |
| ! | CTCTGCTTGGATTCACCTTT+TGG | + | chr3_3:4691976-4691995 | Msa0439190:CDS | 45.0% |
| ATTCAAACTCGTGTTTCGGG+TGG | - | chr3_3:4692916-4692935 | None:intergenic | 45.0% | |
| ! | TTGGTGTGAGTTTTGCCGCT+AGG | + | chr3_3:4690113-4690132 | Msa0439190:intron | 50.0% |
| !! | AAGTGTCGGTGCTCCAAAGT+TGG | - | chr3_3:4690202-4690221 | None:intergenic | 50.0% |
| CATCGACACATGCCAAACAC+TGG | - | chr3_3:4690241-4690260 | None:intergenic | 50.0% | |
| ! | CATGTGTCGATGTCCAACAC+CGG | + | chr3_3:4690249-4690268 | Msa0439190:intron | 50.0% |
| ATGTCCAACACCGGCATATG+CGG | + | chr3_3:4690258-4690277 | Msa0439190:intron | 50.0% | |
| ! | GCTCCCGTTTTACACCCTTA+TGG | + | chr3_3:4691490-4691509 | Msa0439190:CDS | 50.0% |
| TCTAGCCCCAAAATCCGATC+TGG | + | chr3_3:4691514-4691533 | Msa0439190:CDS | 50.0% | |
| ! | CGTGTTTCGGGTGGAGAAAT+GGG | - | chr3_3:4692907-4692926 | None:intergenic | 50.0% |
| ! | TCGTGTTTCGGGTGGAGAAA+TGG | - | chr3_3:4692908-4692927 | None:intergenic | 50.0% |
| GTAACCGCATATGCCGGTGT+TGG | - | chr3_3:4690265-4690284 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 4689409 | 4693017 | 4689409 | ID=Msa0439190;Name=Msa0439190 |
| chr3_3 | mRNA | 4689409 | 4693017 | 4689409 | ID=Msa0439190-mRNA-1;Parent=Msa0439190;Name=Msa0439190-mRNA-1;_AED=0.08;_eAED=0.08;_QI=125|1|1|1|1|1|6|338|239 |
| chr3_3 | exon | 4689409 | 4689581 | 4689409 | ID=Msa0439190-mRNA-1:exon:1040;Parent=Msa0439190-mRNA-1 |
| chr3_3 | exon | 4690411 | 4690615 | 4690411 | ID=Msa0439190-mRNA-1:exon:1041;Parent=Msa0439190-mRNA-1 |
| chr3_3 | exon | 4691435 | 4691535 | 4691435 | ID=Msa0439190-mRNA-1:exon:1042;Parent=Msa0439190-mRNA-1 |
| chr3_3 | exon | 4691708 | 4691836 | 4691708 | ID=Msa0439190-mRNA-1:exon:1043;Parent=Msa0439190-mRNA-1 |
| chr3_3 | exon | 4691932 | 4692020 | 4691932 | ID=Msa0439190-mRNA-1:exon:1044;Parent=Msa0439190-mRNA-1 |
| chr3_3 | exon | 4692532 | 4693017 | 4692532 | ID=Msa0439190-mRNA-1:exon:1045;Parent=Msa0439190-mRNA-1 |
| chr3_3 | five_prime_UTR | 4689409 | 4689533 | 4689409 | ID=Msa0439190-mRNA-1:five_prime_utr;Parent=Msa0439190-mRNA-1 |
| chr3_3 | CDS | 4689534 | 4689581 | 4689534 | ID=Msa0439190-mRNA-1:cds;Parent=Msa0439190-mRNA-1 |
| chr3_3 | CDS | 4690411 | 4690615 | 4690411 | ID=Msa0439190-mRNA-1:cds;Parent=Msa0439190-mRNA-1 |
| chr3_3 | CDS | 4691435 | 4691535 | 4691435 | ID=Msa0439190-mRNA-1:cds;Parent=Msa0439190-mRNA-1 |
| chr3_3 | CDS | 4691708 | 4691836 | 4691708 | ID=Msa0439190-mRNA-1:cds;Parent=Msa0439190-mRNA-1 |
| chr3_3 | CDS | 4691932 | 4692020 | 4691932 | ID=Msa0439190-mRNA-1:cds;Parent=Msa0439190-mRNA-1 |
| chr3_3 | CDS | 4692532 | 4692679 | 4692532 | ID=Msa0439190-mRNA-1:cds;Parent=Msa0439190-mRNA-1 |
| chr3_3 | three_prime_UTR | 4692680 | 4693017 | 4692680 | ID=Msa0439190-mRNA-1:three_prime_utr;Parent=Msa0439190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
