Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012310 | XP_013447464.1 | 94.561 | 239 | 13 | 0 | 1 | 239 | 1 | 239 | 1.15e-165 | 467 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012310 | sp|Q8LFP9|ABA4_ARATH | 62.304 | 191 | 71 | 1 | 44 | 234 | 31 | 220 | 5.88e-85 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012310 | G7ZY14 | 94.561 | 239 | 13 | 0 | 1 | 239 | 1 | 239 | 5.50e-166 | 467 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0439190 | Msa1012310 | 0.992306 | 1.660696e-192 | -8.615850e-47 |
| Msa1012310 | Msa1012380 | 0.904770 | 8.673974e-80 | -8.615850e-47 |
| Msa1012310 | Msa1091520 | 0.804355 | 2.248037e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012310 | MtrunA17_Chr7g0215461 | 94.561 | 239 | 13 | 0 | 1 | 239 | 1 | 239 | 1.06e-169 | 467 |
| Msa1012310 | MtrunA17_Chr6g0460091 | 71.163 | 215 | 56 | 2 | 31 | 239 | 10 | 224 | 2.37e-107 | 308 |
| Msa1012310 | MtrunA17_Chr6g0457611 | 64.082 | 245 | 73 | 3 | 1 | 239 | 1 | 236 | 7.45e-107 | 308 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012310 | AT1G67080.1 | 62.304 | 191 | 71 | 1 | 44 | 234 | 31 | 220 | 5.97e-86 | 254 |
| Msa1012310 | AT1G67080.2 | 56.303 | 119 | 51 | 1 | 44 | 162 | 31 | 148 | 1.25e-41 | 140 |
Find 61 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATTTGCTGTGCCTTTCT+TGG | 0.147302 | 7_1:+17400505 | Msa1012310:CDS |
| CTCTGCTTGGATTCACCTTT+TGG | 0.175390 | 7_1:+17400718 | Msa1012310:CDS |
| AAAATCAATCGAACTGTTTC+AGG | 0.226425 | 7_1:-17400531 | None:intergenic |
| AAACGTACCAGATCGGATTT+TGG | 0.231509 | 7_1:-17400263 | None:intergenic |
| TACATTCAAACTCGTGTTTC+GGG | 0.234242 | 7_1:-17401657 | None:intergenic |
| CGAACCGATCTTGTAGCTTT+TGG | 0.236227 | 7_1:-17399304 | None:intergenic |
| AAGGGTTGTACCTTATTAAA+TGG | 0.248376 | 7_1:-17398313 | None:intergenic |
| TTCACCATTACCATTTAATA+AGG | 0.254760 | 7_1:+17398303 | Msa1012310:CDS |
| ATGAATATGAAGCTGAAATT+TGG | 0.275042 | 7_1:-17398186 | None:intergenic |
| AGTGGAGATTGGAGTTTCAT+AGG | 0.317626 | 7_1:+17399259 | Msa1012310:CDS |
| GATTCAGTTTAAGTGGAGAT+TGG | 0.341492 | 7_1:+17399248 | Msa1012310:CDS |
| AATATTAGTTGTAATTTCAT+TGG | 0.343241 | 7_1:+17401471 | Msa1012310:three_prime_UTR |
| TCGTGTTTCGGGTGGAGAAA+TGG | 0.348941 | 7_1:-17401646 | None:intergenic |
| GTACATTCAAACTCGTGTTT+CGG | 0.365449 | 7_1:-17401658 | None:intergenic |
| TGACTTTGAATGTTCACATT+TGG | 0.367584 | 7_1:+17401728 | Msa1012310:three_prime_UTR |
| CTCAATGTTGCAGGGTTCAT+AGG | 0.368762 | 7_1:+17400164 | Msa1012310:intron |
| TTTCTGATATCAAAAGAGAT+TGG | 0.374873 | 7_1:-17401561 | None:intergenic |
| AGAAGTAGATTCAGTTTAAG+TGG | 0.379934 | 7_1:+17399241 | Msa1012310:CDS |
| TGAATGTACATTCAGAAAAC+AGG | 0.393017 | 7_1:+17401672 | Msa1012310:three_prime_UTR |
| ATCAAATTGAAGCATTAAAC+AGG | 0.398350 | 7_1:+17401615 | Msa1012310:three_prime_UTR |
| TCTACTTCTCGAAATGTGTT+TGG | 0.403637 | 7_1:-17399227 | None:intergenic |
| ATCAAACAAAATACATGTAT+AGG | 0.419081 | 7_1:-17401428 | None:intergenic |
| TCATGTTGGAAGTCGAGAAA+TGG | 0.431456 | 7_1:-17401708 | None:intergenic |
| TTCTGATATCAAAAGAGATT+GGG | 0.435030 | 7_1:-17401560 | None:intergenic |
| CGTGTTTCGGGTGGAGAAAT+GGG | 0.435955 | 7_1:-17401645 | None:intergenic |
| TTCCTAGCACTGTATTTACA+TGG | 0.448057 | 7_1:+17400195 | Msa1012310:CDS |
| AGTTGACTTTAGCCTCTGCT+TGG | 0.453787 | 7_1:+17400705 | Msa1012310:CDS |
| GAACCATAAGGGTGTAAAAC+GGG | 0.460581 | 7_1:-17400235 | None:intergenic |
| AGATGGTCATGGTTTATAGA+TGG | 0.462348 | 7_1:+17401403 | Msa1012310:exon |
| TGTACCTTATTAAATGGTAA+TGG | 0.465204 | 7_1:-17398307 | None:intergenic |
| ACATGAGTAAGAATCCCAAT+TGG | 0.470965 | 7_1:-17401347 | None:intergenic |
| CCTTTCTCTATCAGGAGTGA+TGG | 0.472888 | 7_1:+17399199 | Msa1012310:CDS |
| TAAAACTCTGTAGGACAGTT+GGG | 0.479095 | 7_1:+17399158 | Msa1012310:CDS |
| ACCAAAACTACAAGAAAAGA+TGG | 0.507075 | 7_1:+17401386 | Msa1012310:CDS |
| ATAAAACTCTGTAGGACAGT+TGG | 0.510520 | 7_1:+17399157 | Msa1012310:CDS |
| CTGTTTCAGGTGTCCAAGAA+AGG | 0.512995 | 7_1:-17400518 | None:intergenic |
| AGAATGCCGAGCACTACATA+TGG | 0.521426 | 7_1:-17400477 | None:intergenic |
| CCATCACTCCTGATAGAGAA+AGG | 0.526576 | 7_1:-17399199 | None:intergenic |
| TGGGCAAAAGAACAAGCAAA+AGG | 0.529473 | 7_1:-17401327 | None:intergenic |
| TCTAGCCCCAAAATCCGATC+TGG | 0.530853 | 7_1:+17400256 | Msa1012310:CDS |
| CATGAGTAAGAATCCCAATT+GGG | 0.537813 | 7_1:-17401346 | None:intergenic |
| GTGAACATTCAAAGTCATGT+TGG | 0.541816 | 7_1:-17401722 | None:intergenic |
| CCCCATGTAAATACAGTGCT+AGG | 0.554898 | 7_1:-17400197 | None:intergenic |
| TCCTAGCACTGTATTTACAT+GGG | 0.556570 | 7_1:+17400196 | Msa1012310:CDS |
| TCCTTGCAGCTTTCTAGCAT+AGG | 0.568671 | 7_1:+17400665 | Msa1012310:intron |
| AGAACCATAAGGGTGTAAAA+CGG | 0.570175 | 7_1:-17400236 | None:intergenic |
| AGTTTACCATATGTAGTGCT+CGG | 0.572021 | 7_1:+17400471 | Msa1012310:CDS |
| TATTCATATATATGAAGAAG+TGG | 0.572941 | 7_1:+17398202 | Msa1012310:five_prime_UTR |
| TCCAGGCATATATTTCATGA+TGG | 0.581090 | 7_1:+17401269 | Msa1012310:intron |
| CAGAAAGAAACGTACCAGAT+CGG | 0.600587 | 7_1:-17400270 | None:intergenic |
| ATTCAAACTCGTGTTTCGGG+TGG | 0.604313 | 7_1:-17401654 | None:intergenic |
| AACAACAGATTCAGCAACAA+TGG | 0.604765 | 7_1:-17398225 | None:intergenic |
| GGAGATTGGAGTTTCATAGG+AGG | 0.615543 | 7_1:+17399262 | Msa1012310:CDS |
| CCTAGCACTGTATTTACATG+GGG | 0.616641 | 7_1:+17400197 | Msa1012310:CDS |
| GAGATTGGAGTTTCATAGGA+GGG | 0.616886 | 7_1:+17399263 | Msa1012310:CDS |
| ACTACAAGAAAAGATGGTCA+TGG | 0.623185 | 7_1:+17401392 | Msa1012310:CDS |
| AAAACCAAAAGCTACAAGAT+CGG | 0.627640 | 7_1:+17399300 | Msa1012310:CDS |
| CAAAAGGTGAATCCAAGCAG+AGG | 0.662634 | 7_1:-17400717 | None:intergenic |
| TGAAGAATCAGATTGAAACT+CGG | 0.677130 | 7_1:+17401294 | Msa1012310:CDS |
| GGCAGGATATAAAACTCTGT+AGG | 0.684612 | 7_1:+17399149 | Msa1012310:intron |
| GAGTAAATACTTACTACCTG+AGG | 0.725135 | 7_1:+17400557 | Msa1012310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTGATTTATAATCATTT+GGG | + | chr7_1:17399127-17399146 | Msa1012310:intron | 10.0% |
| !! | ATTTGTGTAAAATCAAAAAA+AGG | - | chr7_1:17398388-17398407 | None:intergenic | 15.0% |
| !!! | TTTTTTTGATTTTACACAAA+TGG | + | chr7_1:17398387-17398406 | Msa1012310:intron | 15.0% |
| !!! | TTTTTTGATTTTACACAAAT+GGG | + | chr7_1:17398388-17398407 | Msa1012310:intron | 15.0% |
| !!! | TTGTTTAAAACAAAACAAAT+AGG | + | chr7_1:17398879-17398898 | Msa1012310:intron | 15.0% |
| !!! | CATATTGATTTATAATCATT+TGG | + | chr7_1:17399126-17399145 | Msa1012310:intron | 15.0% |
| !!! | TATTGATTTATAATCATTTG+GGG | + | chr7_1:17399128-17399147 | Msa1012310:intron | 15.0% |
| !!! | CTATATTTATCTTATCTTTT+TGG | + | chr7_1:17399536-17399555 | Msa1012310:intron | 15.0% |
| !! | AACAAACAATAAAATAAAGT+TGG | - | chr7_1:17399775-17399794 | None:intergenic | 15.0% |
| !! | TAATTTCAGAAAAATTAATC+AGG | - | chr7_1:17400420-17400439 | None:intergenic | 15.0% |
| !! | AATATTAGTTGTAATTTCAT+TGG | + | chr7_1:17401471-17401490 | Msa1012310:three_prime_UTR | 15.0% |
| !! | TATTCATATATATGAAGAAG+TGG | + | chr7_1:17398202-17398221 | Msa1012310:five_prime_UTR | 20.0% |
| !! | TACAAAACAAAACAATGAAA+GGG | - | chr7_1:17398334-17398353 | None:intergenic | 20.0% |
| !! | TTACAAAACAAAACAATGAA+AGG | - | chr7_1:17398335-17398354 | None:intergenic | 20.0% |
| !!! | TTTTTGATTTTACACAAATG+GGG | + | chr7_1:17398389-17398408 | Msa1012310:intron | 20.0% |
| !! | TTTGTAATAGATTTGATGTT+AGG | + | chr7_1:17398565-17398584 | Msa1012310:intron | 20.0% |
| !!! | AAATCTTCAATTTTAAGTGT+CGG | - | chr7_1:17398959-17398978 | None:intergenic | 20.0% |
| !! | AGTTTATTTATTCGTATGTA+TGG | + | chr7_1:17399058-17399077 | Msa1012310:intron | 20.0% |
| !!! | TTTTTCATGTAATCTAGAAT+TGG | + | chr7_1:17399380-17399399 | Msa1012310:intron | 20.0% |
| !! | AATTTACCATTCAATAGAAT+TGG | + | chr7_1:17399424-17399443 | Msa1012310:intron | 20.0% |
| !!! | TATTTATCTTATCTTTTTGG+CGG | + | chr7_1:17399539-17399558 | Msa1012310:intron | 20.0% |
| !!! | AAACTATCTTAAAGCATTTA+AGG | - | chr7_1:17399719-17399738 | None:intergenic | 20.0% |
| !!! | CTCTATTCTTTTTAAGTTTT+TGG | + | chr7_1:17399877-17399896 | Msa1012310:intron | 20.0% |
| !! | ACATGAATAATTGTAGAAAA+GGG | - | chr7_1:17399945-17399964 | None:intergenic | 20.0% |
| !! | CAAAAGAATAACAGAAAATT+AGG | - | chr7_1:17399995-17400014 | None:intergenic | 20.0% |
| !!! | ACAATTCATATTCAGTTTTT+AGG | + | chr7_1:17400329-17400348 | Msa1012310:intron | 20.0% |
| !!! | TCCTTTTCATTTCATTTATT+TGG | + | chr7_1:17400379-17400398 | Msa1012310:intron | 20.0% |
| !! | ACCAAATAAATGAAATGAAA+AGG | - | chr7_1:17400383-17400402 | None:intergenic | 20.0% |
| !! | TTTAGATGTTCAAATATACA+TGG | + | chr7_1:17401014-17401033 | Msa1012310:intron | 20.0% |
| !! | AATATAATTGGGATGATTAA+TGG | - | chr7_1:17401043-17401062 | None:intergenic | 20.0% |
| !! | TGAAGATCATGAATATAATT+GGG | - | chr7_1:17401054-17401073 | None:intergenic | 20.0% |
| !! | ATCAAACAAAATACATGTAT+AGG | - | chr7_1:17401431-17401450 | None:intergenic | 20.0% |
| !!! | GTATTTTGTTTGATGAATTT+AGG | + | chr7_1:17401437-17401456 | Msa1012310:three_prime_UTR | 20.0% |
| !!! | AATTTCATTGGTACATTTTT+TGG | + | chr7_1:17401483-17401502 | Msa1012310:three_prime_UTR | 20.0% |
| ! | GAGAAAAAGTTAGCTAAAAT+TGG | - | chr7_1:17398157-17398176 | None:intergenic | 25.0% |
| ! | ATGAATATGAAGCTGAAATT+TGG | - | chr7_1:17398189-17398208 | None:intergenic | 25.0% |
| ! | TTCACCATTACCATTTAATA+AGG | + | chr7_1:17398303-17398322 | Msa1012310:CDS | 25.0% |
| ! | TGTACCTTATTAAATGGTAA+TGG | - | chr7_1:17398310-17398329 | None:intergenic | 25.0% |
| !!! | TCTGCATTTTTTGTCTTTTT+TGG | + | chr7_1:17398360-17398379 | Msa1012310:intron | 25.0% |
| ! | ATTTCACATTAGTAATGCAT+TGG | - | chr7_1:17398497-17398516 | None:intergenic | 25.0% |
| ! | AATGCATTACTAATGTGAAA+TGG | + | chr7_1:17398496-17398515 | Msa1012310:intron | 25.0% |
| ! | ATGCATTACTAATGTGAAAT+GGG | + | chr7_1:17398497-17398516 | Msa1012310:intron | 25.0% |
| ! | TGATATGTTATAATGCATGT+TGG | + | chr7_1:17398730-17398749 | Msa1012310:intron | 25.0% |
| !!! | TTTTGTTTTAAACAACCTAG+CGG | - | chr7_1:17398874-17398893 | None:intergenic | 25.0% |
| ! | GAGTTTGTATTTCAAAAAGT+TGG | + | chr7_1:17398901-17398920 | Msa1012310:intron | 25.0% |
| !!! | TTTTGGTTTTACAACAATTC+TGG | - | chr7_1:17399290-17399309 | None:intergenic | 25.0% |
| ! | TGAAAAAGTAGCATGAAAAA+AGG | - | chr7_1:17399367-17399386 | None:intergenic | 25.0% |
| !!! | TGAGCATAATGGATATATTT+AGG | + | chr7_1:17399460-17399479 | Msa1012310:intron | 25.0% |
| ! | CACATGAATAATTGTAGAAA+AGG | - | chr7_1:17399946-17399965 | None:intergenic | 25.0% |
| !! | CTTTTCTACAATTATTCATG+TGG | + | chr7_1:17399944-17399963 | Msa1012310:intron | 25.0% |
| ! | TAACAATCTATTCGATTCAA+TGG | - | chr7_1:17400064-17400083 | None:intergenic | 25.0% |
| ! | AATTGCTTGTTCTGTATAAA+TGG | + | chr7_1:17400122-17400141 | Msa1012310:intron | 25.0% |
| ! | AATATAGACCAAAAAGTCTA+TGG | + | chr7_1:17400443-17400462 | Msa1012310:intron | 25.0% |
| !! | AAGGAGTATGCAAATATAAA+CGG | - | chr7_1:17400650-17400669 | None:intergenic | 25.0% |
| ! | ACAAAAAATCGAGAACAATT+TGG | + | chr7_1:17400858-17400877 | Msa1012310:intron | 25.0% |
| ! | TTTGAACATCTAAAAACCAT+TGG | - | chr7_1:17401008-17401027 | None:intergenic | 25.0% |
| ! | CTGAAGATCATGAATATAAT+TGG | - | chr7_1:17401055-17401074 | None:intergenic | 25.0% |
| ! | CAATTATATTCATGATCTTC+AGG | + | chr7_1:17401053-17401072 | Msa1012310:intron | 25.0% |
| ! | TAACACAGATTAACAGATTA+TGG | - | chr7_1:17401107-17401126 | None:intergenic | 25.0% |
| ! | ATTAATGACATTCAAAACTG+TGG | + | chr7_1:17401160-17401179 | Msa1012310:intron | 25.0% |
| !! | TATTTCTCTGACAGTATTTT+TGG | + | chr7_1:17401239-17401258 | Msa1012310:intron | 25.0% |
| ! | TTCTGATATCAAAAGAGATT+GGG | - | chr7_1:17401563-17401582 | None:intergenic | 25.0% |
| ! | TTTCTGATATCAAAAGAGAT+TGG | - | chr7_1:17401564-17401583 | None:intergenic | 25.0% |
| !! | ATCTCTTTTGATATCAGAAA+TGG | + | chr7_1:17401564-17401583 | Msa1012310:three_prime_UTR | 25.0% |
| !! | ATCAAATTGAAGCATTAAAC+AGG | + | chr7_1:17401615-17401634 | Msa1012310:three_prime_UTR | 25.0% |
| AAGGGTTGTACCTTATTAAA+TGG | - | chr7_1:17398316-17398335 | None:intergenic | 30.0% | |
| CAGAGAAATTTGATATGTTG+TGG | + | chr7_1:17398793-17398812 | Msa1012310:intron | 30.0% | |
| TGCTAAGAAGTTGAAAATGA+GGG | - | chr7_1:17398831-17398850 | None:intergenic | 30.0% | |
| ! | ATTTTCAACTTCTTAGCACT+TGG | + | chr7_1:17398833-17398852 | Msa1012310:intron | 30.0% |
| ! | TGAATTTTCCTTTCTCTATC+AGG | + | chr7_1:17399191-17399210 | Msa1012310:CDS | 30.0% |
| AGAAGTAGATTCAGTTTAAG+TGG | + | chr7_1:17399241-17399260 | Msa1012310:CDS | 30.0% | |
| AAAACCAAAAGCTACAAGAT+CGG | + | chr7_1:17399300-17399319 | Msa1012310:CDS | 30.0% | |
| !! | GTATTTGACTTCTTTTTGGA+TGG | - | chr7_1:17399330-17399349 | None:intergenic | 30.0% |
| !! | GCATGTATTTGACTTCTTTT+TGG | - | chr7_1:17399334-17399353 | None:intergenic | 30.0% |
| ! | GGTTCTTTTGCAAAAATTGT+TGG | + | chr7_1:17399481-17399500 | Msa1012310:intron | 30.0% |
| CAAAAATTGTTGGATCTGTA+AGG | + | chr7_1:17399491-17399510 | Msa1012310:intron | 30.0% | |
| TCGTAAAGTAGGTTACTATT+AGG | + | chr7_1:17399567-17399586 | Msa1012310:intron | 30.0% | |
| CGTAAAGTAGGTTACTATTA+GGG | + | chr7_1:17399568-17399587 | Msa1012310:intron | 30.0% | |
| !! | AAGTTTTTGGAGACAAGTTA+TGG | + | chr7_1:17399890-17399909 | Msa1012310:intron | 30.0% |
| ! | ACTACTTTCCATAGACTTTT+TGG | - | chr7_1:17400454-17400473 | None:intergenic | 30.0% |
| AAAATCAATCGAACTGTTTC+AGG | - | chr7_1:17400534-17400553 | None:intergenic | 30.0% | |
| CAAAAAGATCAACAACCAAA+AGG | - | chr7_1:17400736-17400755 | None:intergenic | 30.0% | |
| GAAATCACAAAAGATACAAC+AGG | - | chr7_1:17400768-17400787 | None:intergenic | 30.0% | |
| TTGGATAATTAATGCCGTTA+AGG | + | chr7_1:17400877-17400896 | Msa1012310:intron | 30.0% | |
| AATGCAATTAACCCTGAATT+TGG | + | chr7_1:17400972-17400991 | Msa1012310:intron | 30.0% | |
| AAACTATACACATGATATCG+TGG | + | chr7_1:17401126-17401145 | Msa1012310:intron | 30.0% | |
| !!! | GTATTTTTGGTTCAAAATCC+AGG | + | chr7_1:17401252-17401271 | Msa1012310:intron | 30.0% |
| TGAAGAATCAGATTGAAACT+CGG | + | chr7_1:17401294-17401313 | Msa1012310:CDS | 30.0% | |
| ACCAAAACTACAAGAAAAGA+TGG | + | chr7_1:17401386-17401405 | Msa1012310:CDS | 30.0% | |
| ! | ACCATCTTTTCTTGTAGTTT+TGG | - | chr7_1:17401390-17401409 | None:intergenic | 30.0% |
| TGAATGTACATTCAGAAAAC+AGG | + | chr7_1:17401672-17401691 | Msa1012310:three_prime_UTR | 30.0% | |
| TGACTTTGAATGTTCACATT+TGG | + | chr7_1:17401728-17401747 | Msa1012310:three_prime_UTR | 30.0% | |
| AACAACAGATTCAGCAACAA+TGG | - | chr7_1:17398228-17398247 | None:intergenic | 35.0% | |
| ATTTGATGTTAGGTGCATGT+TGG | + | chr7_1:17398575-17398594 | Msa1012310:intron | 35.0% | |
| TGTTTGTGTAAGTGCTTCAT+AGG | + | chr7_1:17398642-17398661 | Msa1012310:intron | 35.0% | |
| AGTGCTTCATAGGCAATAAA+AGG | + | chr7_1:17398652-17398671 | Msa1012310:intron | 35.0% | |
| GTGCTTCATAGGCAATAAAA+GGG | + | chr7_1:17398653-17398672 | Msa1012310:intron | 35.0% | |
| CCATATGAGTTATACTTACG+CGG | - | chr7_1:17398690-17398709 | None:intergenic | 35.0% | |
| CTGCAACATTCTATCATATG+AGG | - | chr7_1:17398776-17398795 | None:intergenic | 35.0% | |
| AATTTGATATGTTGTGGCGT+CGG | + | chr7_1:17398799-17398818 | Msa1012310:intron | 35.0% | |
| GCTAAGAAGTTGAAAATGAG+GGG | - | chr7_1:17398830-17398849 | None:intergenic | 35.0% | |
| GTGCTAAGAAGTTGAAAATG+AGG | - | chr7_1:17398832-17398851 | None:intergenic | 35.0% | |
| TTGTGTCATCAAACCAACTT+TGG | + | chr7_1:17398929-17398948 | Msa1012310:intron | 35.0% | |
| TTGAAGATTTGTCCAGTGTT+TGG | + | chr7_1:17398969-17398988 | Msa1012310:intron | 35.0% | |
| ! | GATTTATAATCATTTGGGGC+AGG | + | chr7_1:17399132-17399151 | Msa1012310:intron | 35.0% |
| ATAAAACTCTGTAGGACAGT+TGG | + | chr7_1:17399157-17399176 | Msa1012310:CDS | 35.0% | |
| TAAAACTCTGTAGGACAGTT+GGG | + | chr7_1:17399158-17399177 | Msa1012310:CDS | 35.0% | |
| TCTACTTCTCGAAATGTGTT+TGG | - | chr7_1:17399230-17399249 | None:intergenic | 35.0% | |
| GATTCAGTTTAAGTGGAGAT+TGG | + | chr7_1:17399248-17399267 | Msa1012310:CDS | 35.0% | |
| TCACAGCCAATTCTATTGAA+TGG | - | chr7_1:17399433-17399452 | None:intergenic | 35.0% | |
| TTCAATAGAATTGGCTGTGA+AGG | + | chr7_1:17399433-17399452 | Msa1012310:intron | 35.0% | |
| GTGAAGGAATTTGAGCATAA+TGG | + | chr7_1:17399449-17399468 | Msa1012310:intron | 35.0% | |
| AAGTCTCAAACAGTCTTACT+AGG | - | chr7_1:17399637-17399656 | None:intergenic | 35.0% | |
| CTAAGCTGTTTATCCAAACA+GGG | + | chr7_1:17399838-17399857 | Msa1012310:intron | 35.0% | |
| GAAAAGGGAATACATGCAAA+AGG | - | chr7_1:17399930-17399949 | None:intergenic | 35.0% | |
| AGCCTTGAACAAACACATTT+AGG | + | chr7_1:17400032-17400051 | Msa1012310:intron | 35.0% | |
| GACCTAAATGTGTTTGTTCA+AGG | - | chr7_1:17400037-17400056 | None:intergenic | 35.0% | |
| TGCTTGTTCTGTATAAATGG+TGG | + | chr7_1:17400125-17400144 | Msa1012310:intron | 35.0% | |
| !! | TTGTTTTACCTCAATGTTGC+AGG | + | chr7_1:17400155-17400174 | Msa1012310:intron | 35.0% |
| ! | TGTTTTACCTCAATGTTGCA+GGG | + | chr7_1:17400156-17400175 | Msa1012310:intron | 35.0% |
| TTCCTAGCACTGTATTTACA+TGG | + | chr7_1:17400195-17400214 | Msa1012310:CDS | 35.0% | |
| TCCTAGCACTGTATTTACAT+GGG | + | chr7_1:17400196-17400215 | Msa1012310:CDS | 35.0% | |
| ! | AGAACCATAAGGGTGTAAAA+CGG | - | chr7_1:17400239-17400258 | None:intergenic | 35.0% |
| AGTTTACCATATGTAGTGCT+CGG | + | chr7_1:17400471-17400490 | Msa1012310:CDS | 35.0% | |
| GAGTAAATACTTACTACCTG+AGG | + | chr7_1:17400557-17400576 | Msa1012310:CDS | 35.0% | |
| ! | TTGTTGATCTTTTTGCTGCA+AGG | + | chr7_1:17400741-17400760 | Msa1012310:CDS | 35.0% |
| CAGCAATAACGAGGAAAATT+GGG | - | chr7_1:17400798-17400817 | None:intergenic | 35.0% | |
| ATGAAAAACCAGCAATAACG+AGG | - | chr7_1:17400807-17400826 | None:intergenic | 35.0% | |
| ! | ATTAATGCCGTTAAGGTATC+TGG | + | chr7_1:17400884-17400903 | Msa1012310:intron | 35.0% |
| ATCTGGTTGATCGTATTAAG+TGG | + | chr7_1:17400901-17400920 | Msa1012310:intron | 35.0% | |
| GTCACAACTCATTAATCATC+CGG | + | chr7_1:17400947-17400966 | Msa1012310:intron | 35.0% | |
| TCAGGGTTAATTGCATTAAC+CGG | - | chr7_1:17400969-17400988 | None:intergenic | 35.0% | |
| GTTTATGACGTCCAAATTCA+GGG | - | chr7_1:17400986-17401005 | None:intergenic | 35.0% | |
| ATTTGGACGTCATAAACCAA+TGG | + | chr7_1:17400989-17401008 | Msa1012310:intron | 35.0% | |
| TCCAGGCATATATTTCATGA+TGG | + | chr7_1:17401269-17401288 | Msa1012310:intron | 35.0% | |
| TCCATCATGAAATATATGCC+TGG | - | chr7_1:17401273-17401292 | None:intergenic | 35.0% | |
| CATGAGTAAGAATCCCAATT+GGG | - | chr7_1:17401349-17401368 | None:intergenic | 35.0% | |
| ACATGAGTAAGAATCCCAAT+TGG | - | chr7_1:17401350-17401369 | None:intergenic | 35.0% | |
| !!! | TGTAGTTTTGGTCATTGCTT+TGG | - | chr7_1:17401378-17401397 | None:intergenic | 35.0% |
| ACTACAAGAAAAGATGGTCA+TGG | + | chr7_1:17401392-17401411 | Msa1012310:CDS | 35.0% | |
| AGATGGTCATGGTTTATAGA+TGG | + | chr7_1:17401403-17401422 | Msa1012310:exon | 35.0% | |
| TACATTCAAACTCGTGTTTC+GGG | - | chr7_1:17401660-17401679 | None:intergenic | 35.0% | |
| GTACATTCAAACTCGTGTTT+CGG | - | chr7_1:17401661-17401680 | None:intergenic | 35.0% | |
| GTGAACATTCAAAGTCATGT+TGG | - | chr7_1:17401725-17401744 | None:intergenic | 35.0% | |
| CCGCGTAAGTATAACTCATA+TGG | + | chr7_1:17398687-17398706 | Msa1012310:intron | 40.0% | |
| TCAACTTCTTAGCACTTGGT+TGG | + | chr7_1:17398837-17398856 | Msa1012310:intron | 40.0% | |
| TTCAATGTAACCGCATATGC+CGG | - | chr7_1:17399014-17399033 | None:intergenic | 40.0% | |
| GGCAGGATATAAAACTCTGT+AGG | + | chr7_1:17399149-17399168 | Msa1012310:intron | 40.0% | |
| AGTGGAGATTGGAGTTTCAT+AGG | + | chr7_1:17399259-17399278 | Msa1012310:CDS | 40.0% | |
| GAGATTGGAGTTTCATAGGA+GGG | + | chr7_1:17399263-17399282 | Msa1012310:CDS | 40.0% | |
| GGTTACTATTAGGGCATGTT+TGG | + | chr7_1:17399577-17399596 | Msa1012310:intron | 40.0% | |
| GCTAAGCTGTTTATCCAAAC+AGG | + | chr7_1:17399837-17399856 | Msa1012310:intron | 40.0% | |
| AGAAAAGACAAGACCCTGTT+TGG | - | chr7_1:17399854-17399873 | None:intergenic | 40.0% | |
| CCTAGCACTGTATTTACATG+GGG | + | chr7_1:17400197-17400216 | Msa1012310:CDS | 40.0% | |
| ! | GAACCATAAGGGTGTAAAAC+GGG | - | chr7_1:17400238-17400257 | None:intergenic | 40.0% |
| !!! | TTTTGGGGCTAGAACCATAA+GGG | - | chr7_1:17400249-17400268 | None:intergenic | 40.0% |
| !!! | ATTTTGGGGCTAGAACCATA+AGG | - | chr7_1:17400250-17400269 | None:intergenic | 40.0% |
| ! | AACGTACCAGATCGGATTTT+GGG | - | chr7_1:17400265-17400284 | None:intergenic | 40.0% |
| ! | AAACGTACCAGATCGGATTT+TGG | - | chr7_1:17400266-17400285 | None:intergenic | 40.0% |
| CAGAAAGAAACGTACCAGAT+CGG | - | chr7_1:17400273-17400292 | None:intergenic | 40.0% | |
| !! | CTTATTTGCTGTGCCTTTCT+TGG | + | chr7_1:17400505-17400524 | Msa1012310:CDS | 40.0% |
| GATGAATGAATACACACCTC+AGG | - | chr7_1:17400576-17400595 | None:intergenic | 40.0% | |
| CCAGCAATAACGAGGAAAAT+TGG | - | chr7_1:17400799-17400818 | None:intergenic | 40.0% | |
| ! | CCAATTTTCCTCGTTATTGC+TGG | + | chr7_1:17400796-17400815 | Msa1012310:intron | 40.0% |
| CGATCAACCAGATACCTTAA+CGG | - | chr7_1:17400894-17400913 | None:intergenic | 40.0% | |
| GGTTGATCGTATTAAGTGGT+TGG | + | chr7_1:17400905-17400924 | Msa1012310:intron | 40.0% | |
| GGTTTATGACGTCCAAATTC+AGG | - | chr7_1:17400987-17401006 | None:intergenic | 40.0% | |
| TGGGCAAAAGAACAAGCAAA+AGG | - | chr7_1:17401330-17401349 | None:intergenic | 40.0% | |
| ! | TGCTTGTTCTTTTGCCCAAT+TGG | + | chr7_1:17401332-17401351 | Msa1012310:CDS | 40.0% |
| ! | GCTTGTTCTTTTGCCCAATT+GGG | + | chr7_1:17401333-17401352 | Msa1012310:CDS | 40.0% |
| TCATGTTGGAAGTCGAGAAA+TGG | - | chr7_1:17401711-17401730 | None:intergenic | 40.0% | |
| CCATCACTCCTGATAGAGAA+AGG | - | chr7_1:17399202-17399221 | None:intergenic | 45.0% | |
| CCTTTCTCTATCAGGAGTGA+TGG | + | chr7_1:17399199-17399218 | Msa1012310:CDS | 45.0% | |
| GGAGATTGGAGTTTCATAGG+AGG | + | chr7_1:17399262-17399281 | Msa1012310:CDS | 45.0% | |
| ! | CGAACCGATCTTGTAGCTTT+TGG | - | chr7_1:17399307-17399326 | None:intergenic | 45.0% |
| TGGCGGCATTATCGTAAAGT+AGG | + | chr7_1:17399556-17399575 | Msa1012310:intron | 45.0% | |
| ! | GACTGTTTGAGACTTGAGAG+AGG | + | chr7_1:17399642-17399661 | Msa1012310:intron | 45.0% |
| ACTCGAATAGCTGAGATCAG+CGG | - | chr7_1:17399970-17399989 | None:intergenic | 45.0% | |
| CTATGAACCCTGCAACATTG+AGG | - | chr7_1:17400166-17400185 | None:intergenic | 45.0% | |
| CTCAATGTTGCAGGGTTCAT+AGG | + | chr7_1:17400164-17400183 | Msa1012310:intron | 45.0% | |
| CCCCATGTAAATACAGTGCT+AGG | - | chr7_1:17400200-17400219 | None:intergenic | 45.0% | |
| ! | ACGTACCAGATCGGATTTTG+GGG | - | chr7_1:17400264-17400283 | None:intergenic | 45.0% |
| AGAATGCCGAGCACTACATA+TGG | - | chr7_1:17400480-17400499 | None:intergenic | 45.0% | |
| ! | CTGTTTCAGGTGTCCAAGAA+AGG | - | chr7_1:17400521-17400540 | None:intergenic | 45.0% |
| ! | TCCTTGCAGCTTTCTAGCAT+AGG | + | chr7_1:17400665-17400684 | Msa1012310:intron | 45.0% |
| TCCTATGCTAGAAAGCTGCA+AGG | - | chr7_1:17400669-17400688 | None:intergenic | 45.0% | |
| ! | AGTTGACTTTAGCCTCTGCT+TGG | + | chr7_1:17400705-17400724 | Msa1012310:CDS | 45.0% |
| CAAAAGGTGAATCCAAGCAG+AGG | - | chr7_1:17400720-17400739 | None:intergenic | 45.0% | |
| ! | CTCTGCTTGGATTCACCTTT+TGG | + | chr7_1:17400718-17400737 | Msa1012310:CDS | 45.0% |
| ATTCAAACTCGTGTTTCGGG+TGG | - | chr7_1:17401657-17401676 | None:intergenic | 45.0% | |
| ! | TTGGTGTGAGTTTTGCCGCT+AGG | + | chr7_1:17398856-17398875 | Msa1012310:intron | 50.0% |
| !! | AAGTGTCGGTGCTCCAAAGT+TGG | - | chr7_1:17398945-17398964 | None:intergenic | 50.0% |
| CATCGACACATGCCAAACAC+TGG | - | chr7_1:17398984-17399003 | None:intergenic | 50.0% | |
| ! | CATGTGTCGATGTCCAACAC+CGG | + | chr7_1:17398992-17399011 | Msa1012310:intron | 50.0% |
| ATGTCCAACACCGGCATATG+CGG | + | chr7_1:17399001-17399020 | Msa1012310:intron | 50.0% | |
| ! | GCTCCCGTTTTACACCCTTA+TGG | + | chr7_1:17400232-17400251 | Msa1012310:CDS | 50.0% |
| TCTAGCCCCAAAATCCGATC+TGG | + | chr7_1:17400256-17400275 | Msa1012310:CDS | 50.0% | |
| ! | CGTGTTTCGGGTGGAGAAAT+GGG | - | chr7_1:17401648-17401667 | None:intergenic | 50.0% |
| ! | TCGTGTTTCGGGTGGAGAAA+TGG | - | chr7_1:17401649-17401668 | None:intergenic | 50.0% |
| GTAACCGCATATGCCGGTGT+TGG | - | chr7_1:17399008-17399027 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 17398152 | 17401758 | 17398152 | ID=Msa1012310;Name=Msa1012310 |
| chr7_1 | mRNA | 17398152 | 17401758 | 17398152 | ID=Msa1012310-mRNA-1;Parent=Msa1012310;Name=Msa1012310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=125|1|1|1|1|1|6|337|239 |
| chr7_1 | exon | 17398152 | 17398324 | 17398152 | ID=Msa1012310-mRNA-1:exon:4377;Parent=Msa1012310-mRNA-1 |
| chr7_1 | exon | 17399154 | 17399358 | 17399154 | ID=Msa1012310-mRNA-1:exon:4378;Parent=Msa1012310-mRNA-1 |
| chr7_1 | exon | 17400177 | 17400277 | 17400177 | ID=Msa1012310-mRNA-1:exon:4379;Parent=Msa1012310-mRNA-1 |
| chr7_1 | exon | 17400450 | 17400578 | 17400450 | ID=Msa1012310-mRNA-1:exon:4380;Parent=Msa1012310-mRNA-1 |
| chr7_1 | exon | 17400674 | 17400762 | 17400674 | ID=Msa1012310-mRNA-1:exon:4381;Parent=Msa1012310-mRNA-1 |
| chr7_1 | exon | 17401274 | 17401758 | 17401274 | ID=Msa1012310-mRNA-1:exon:4382;Parent=Msa1012310-mRNA-1 |
| chr7_1 | five_prime_UTR | 17398152 | 17398276 | 17398152 | ID=Msa1012310-mRNA-1:five_prime_utr;Parent=Msa1012310-mRNA-1 |
| chr7_1 | CDS | 17398277 | 17398324 | 17398277 | ID=Msa1012310-mRNA-1:cds;Parent=Msa1012310-mRNA-1 |
| chr7_1 | CDS | 17399154 | 17399358 | 17399154 | ID=Msa1012310-mRNA-1:cds;Parent=Msa1012310-mRNA-1 |
| chr7_1 | CDS | 17400177 | 17400277 | 17400177 | ID=Msa1012310-mRNA-1:cds;Parent=Msa1012310-mRNA-1 |
| chr7_1 | CDS | 17400450 | 17400578 | 17400450 | ID=Msa1012310-mRNA-1:cds;Parent=Msa1012310-mRNA-1 |
| chr7_1 | CDS | 17400674 | 17400762 | 17400674 | ID=Msa1012310-mRNA-1:cds;Parent=Msa1012310-mRNA-1 |
| chr7_1 | CDS | 17401274 | 17401421 | 17401274 | ID=Msa1012310-mRNA-1:cds;Parent=Msa1012310-mRNA-1 |
| chr7_1 | three_prime_UTR | 17401422 | 17401758 | 17401422 | ID=Msa1012310-mRNA-1:three_prime_utr;Parent=Msa1012310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
