AlfalfaGEDB | Msa1091520

M. sativa cultivar zhongmu-4 / Msa1091520

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009687 GO:0009688 GO:0009941 GO:0009987 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0019222 GO:0019752 GO:0031323 GO:0031967 GO:0031975 GO:0032787 GO:0032928 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046165 GO:0046394 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0072330 GO:0090322 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645 GO:2000377
PFAM: PF14108.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1091520	XP_013447464.1	94.561	239	13	0	1	239	1	239	1.20e-165	467

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1091520	sp\|Q8LFP9\|ABA4_ARATH	62.304	191	71	1	44	234	31	220	4.23e-85	255

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1091520	G7ZY14	94.561	239	13	0	1	239	1	239	5.75e-166	467

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002490	Msa1091520	0.809208	2.119333e-50	-8.615850e-47
Msa0016670	Msa1091520	0.833294	5.792472e-56	-8.615850e-47
Msa0032920	Msa1091520	-0.811172	7.996687e-51	-8.615850e-47
Msa0040240	Msa1091520	0.810810	9.578404e-51	-8.615850e-47
Msa0043670	Msa1091520	-0.826916	2.086179e-54	-8.615850e-47
Msa0057710	Msa1091520	0.801535	8.599397e-49	-8.615850e-47
Msa0069330	Msa1091520	0.800800	1.216136e-48	-8.615850e-47
Msa0073670	Msa1091520	0.805492	1.300255e-49	-8.615850e-47
Msa0074320	Msa1091520	0.801985	6.953355e-49	-8.615850e-47
Msa0076000	Msa1091520	0.801938	7.110772e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1091520	MtrunA17_Chr7g0215461	94.561	239	13	0	1	239	1	239	1.11e-169	467
Msa1091520	MtrunA17_Chr6g0460091	70.698	215	57	2	31	239	10	224	7.98e-107	307
Msa1091520	MtrunA17_Chr6g0457611	63.673	245	74	3	1	239	1	236	1.22e-106	307

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1091520	AT1G67080.1	62.304	191	71	1	44	234	31	220	4.30e-86	255
Msa1091520	AT1G67080.2	56.303	119	51	1	44	162	31	148	8.14e-42	140

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Find 58 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAAAGCTACAAGAT+CGG	0.627640	7_3:+6808820	Msa1091520:CDS
AAAATCAATCGAACTGTTTC+AGG	0.185668	7_3:-6810052	None:intergenic
AAACGTACCAGATCGGATTT+TGG	0.231509	7_3:-6809784	None:intergenic
AACAACAGATTCAGCAACAA+TGG	0.604765	7_3:-6807601	None:intergenic
AAGGGTTGTACCTTATTAAA+TGG	0.248376	7_3:-6807689	None:intergenic
AATATTAGTTGTAATTTCAT+TGG	0.343241	7_3:+6810992	Msa1091520:three_prime_UTR
ACATGAGTAAGAATCCCAAT+TGG	0.470965	7_3:-6810868	None:intergenic
ACCAAAACTACAAGAAAAGA+TGG	0.507075	7_3:+6810907	Msa1091520:CDS
ACTACAAGAAAAGATGGTCA+TGG	0.623185	7_3:+6810913	Msa1091520:CDS
AGAACCATAAGGGTGTAAAA+CGG	0.569144	7_3:-6809757	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGGTTGTACCTTATTAAA+TGG	-	chr7_3:6807692-6807711	None:intergenic	30.0%
TATTAAATATGTACTCCCTC+CGG	+	chr7_3:6807969-6807988	Msa1091520:intron	30.0%
CAGAGAAATTTGATATGTTG+TGG	+	chr7_3:6808313-6808332	Msa1091520:intron	30.0%
TGCTAAGAAGTTGAAAATGA+GGG	-	chr7_3:6808351-6808370	None:intergenic	30.0%
AAAACCAAAAGCTACAAGAT+CGG	+	chr7_3:6808820-6808839	Msa1091520:CDS	30.0%
CAAAAATTGTTGGATCTGTA+AGG	+	chr7_3:6809011-6809030	Msa1091520:intron	30.0%
TCGTAAAGTAGGTTACTATT+AGG	+	chr7_3:6809088-6809107	Msa1091520:intron	30.0%
CGTAAAGTAGGTTACTATTA+GGG	+	chr7_3:6809089-6809108	Msa1091520:intron	30.0%
AGTTTACCATATGTAGTTCT+CGG	+	chr7_3:6809992-6810011	Msa1091520:CDS	30.0%
AAAATCAATCGAACTGTTTC+AGG	-	chr7_3:6810055-6810074	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	6807528	6811260	6807528	ID=Msa1091520;Name=Msa1091520
chr7_3	mRNA	6807528	6811260	6807528	ID=Msa1091520-mRNA-1;Parent=Msa1091520;Name=Msa1091520-mRNA-1;_AED=0.08;_eAED=0.08;_QI=125\|1\|1\|1\|1\|1\|6\|318\|239
chr7_3	exon	6807528	6807700	6807528	ID=Msa1091520-mRNA-1:exon:2129;Parent=Msa1091520-mRNA-1
chr7_3	exon	6808674	6808878	6808674	ID=Msa1091520-mRNA-1:exon:2130;Parent=Msa1091520-mRNA-1
chr7_3	exon	6809698	6809798	6809698	ID=Msa1091520-mRNA-1:exon:2131;Parent=Msa1091520-mRNA-1
chr7_3	exon	6809971	6810099	6809971	ID=Msa1091520-mRNA-1:exon:2132;Parent=Msa1091520-mRNA-1
chr7_3	exon	6810195	6810283	6810195	ID=Msa1091520-mRNA-1:exon:2133;Parent=Msa1091520-mRNA-1
chr7_3	exon	6810795	6811260	6810795	ID=Msa1091520-mRNA-1:exon:2134;Parent=Msa1091520-mRNA-1
chr7_3	five_prime_UTR	6807528	6807652	6807528	ID=Msa1091520-mRNA-1:five_prime_utr;Parent=Msa1091520-mRNA-1
chr7_3	CDS	6807653	6807700	6807653	ID=Msa1091520-mRNA-1:cds;Parent=Msa1091520-mRNA-1
chr7_3	CDS	6808674	6808878	6808674	ID=Msa1091520-mRNA-1:cds;Parent=Msa1091520-mRNA-1
chr7_3	CDS	6809698	6809798	6809698	ID=Msa1091520-mRNA-1:cds;Parent=Msa1091520-mRNA-1
chr7_3	CDS	6809971	6810099	6809971	ID=Msa1091520-mRNA-1:cds;Parent=Msa1091520-mRNA-1
chr7_3	CDS	6810195	6810283	6810195	ID=Msa1091520-mRNA-1:cds;Parent=Msa1091520-mRNA-1
chr7_3	CDS	6810795	6810942	6810795	ID=Msa1091520-mRNA-1:cds;Parent=Msa1091520-mRNA-1
chr7_3	three_prime_UTR	6810943	6811260	6810943	ID=Msa1091520-mRNA-1:three_prime_utr;Parent=Msa1091520-mRNA-1

Gene Sequence

>Msa1091520

ATGTCTTTCTCTTCTTGCTATTCTTATTCACCATTACCATTTAATAAGGATATAAAACTCTGTAGGACAGTTGGGCAAGTGAAGCTGAATTTTCCTTTCTCTATCAGGAGTGATGGTGTTACCAAACACATTTCGAGAAGTAGGTTCAGTTTAAGTGGAGATTGGAGTTTCATAGGAGGGTCCAGAATTGTTGTAAAACCAAAAGCTACAAGATCGGTTCGCCATCCAAAAAGAAGTCAAATACATGCTTCATGGTTCATAGGATCTCAACTTCCTAGCACTGTATTTTCATGGGGAACAATTGCAGTGCTTCCGTTTTACACCCTTATGGTTCTAGCCCCAAAATCCGATCTGACCAAAAAGTCTATGGAAAGTAGTTTACCATATGTAGTTCTCGGCATTCTATATGCTTATTTGCTGTGCCTTTCTTGGACACCTGAAACAGTTCGATTGATTTTCGCGAGTAAATACTTACTACCTGAGCTTTCTAGCATAGGAAAAATGTTCTCTAGTGAGTTGACTTTAGCCTCTGCTTGGATTCACCTTTTGGTTGTTGATCTTTTTGCTGCAAGGCATATATTTCATGATGGACTGAAGAATCAGATTGAAACTCGGCATTCAGTTTCCTTTTGCTTGTTCTTTTGCCCAATTGGGATTCTTACTCATGTCATCACCAAAGCAATGACCAAAACTACAAGAAAAGATGGTCATGGTTTATAG

Protein sequence

>Msa1091520

MSFSSCYSYSPLPFNKDIKLCRTVGQVKLNFPFSIRSDGVTKHISRSRFSLSGDWSFIGGSRIVVKPKATRSVRHPKRSQIHASWFIGSQLPSTVFSWGTIAVLPFYTLMVLAPKSDLTKKSMESSLPYVVLGILYAYLLCLSWTPETVRLIFASKYLLPELSSIGKMFSSELTLASAWIHLLVVDLFAARHIFHDGLKNQIETRHSVSFCLFFCPIGILTHVITKAMTKTTRKDGHGL*