Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012380 | XP_013447464.1 | 94.561 | 239 | 13 | 0 | 1 | 239 | 1 | 239 | 1.15e-165 | 467 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012380 | sp|Q8LFP9|ABA4_ARATH | 62.304 | 191 | 71 | 1 | 44 | 234 | 31 | 220 | 5.88e-85 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012380 | G7ZY14 | 94.561 | 239 | 13 | 0 | 1 | 239 | 1 | 239 | 5.50e-166 | 467 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043670 | Msa1012380 | -0.817023 | 4.087375e-52 | -8.615850e-47 |
| Msa0092690 | Msa1012380 | -0.805155 | 1.530305e-49 | -8.615850e-47 |
| Msa0092740 | Msa1012380 | -0.802820 | 4.679399e-49 | -8.615850e-47 |
| Msa0825020 | Msa1012380 | 0.803550 | 3.304537e-49 | -8.615850e-47 |
| Msa0439190 | Msa1012380 | 0.909284 | 6.753326e-82 | -8.615850e-47 |
| Msa1012310 | Msa1012380 | 0.904770 | 8.673974e-80 | -8.615850e-47 |
| Msa1012380 | Msa1091520 | 0.814314 | 1.640921e-51 | -8.615850e-47 |
| Msa1012380 | Msa1097640 | 0.812242 | 4.679194e-51 | -8.615850e-47 |
| Msa1012380 | Msa1440260 | -0.823328 | 1.469916e-53 | -8.615850e-47 |
| Msa0292400 | Msa1012380 | 0.802017 | 6.848370e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012380 | MtrunA17_Chr7g0215461 | 94.561 | 239 | 13 | 0 | 1 | 239 | 1 | 239 | 1.06e-169 | 467 |
| Msa1012380 | MtrunA17_Chr6g0460091 | 71.163 | 215 | 56 | 2 | 31 | 239 | 10 | 224 | 2.37e-107 | 308 |
| Msa1012380 | MtrunA17_Chr6g0457611 | 64.082 | 245 | 73 | 3 | 1 | 239 | 1 | 236 | 7.45e-107 | 308 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1012380 | AT1G67080.1 | 62.304 | 191 | 71 | 1 | 44 | 234 | 31 | 220 | 5.97e-86 | 254 |
| Msa1012380 | AT1G67080.2 | 56.303 | 119 | 51 | 1 | 44 | 162 | 31 | 148 | 1.25e-41 | 140 |
Find 61 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATTTGCTGTGCCTTTCT+TGG | 0.147302 | 7_1:-17433657 | Msa1012380:CDS |
| CTCTGCTTGGATTCACCTTT+TGG | 0.175390 | 7_1:-17433444 | Msa1012380:CDS |
| AAAATCAATCGAACTGTTTC+AGG | 0.226425 | 7_1:+17433631 | None:intergenic |
| AAACGTACCAGATCGGATTT+TGG | 0.231509 | 7_1:+17433899 | None:intergenic |
| TACATTCAAACTCGTGTTTC+GGG | 0.234242 | 7_1:+17432504 | None:intergenic |
| CGAACCGATCTTGTAGCTTT+TGG | 0.236227 | 7_1:+17434859 | None:intergenic |
| AAGGGTTGTACCTTATTAAA+TGG | 0.248376 | 7_1:+17435850 | None:intergenic |
| TTCACCATTACCATTTAATA+AGG | 0.254760 | 7_1:-17435860 | Msa1012380:intron |
| ATGAATATGAAGCTGAAATT+TGG | 0.275042 | 7_1:+17435977 | None:intergenic |
| AGTGGAGATTGGAGTTTCAT+AGG | 0.317626 | 7_1:-17434904 | Msa1012380:CDS |
| GATTCAGTTTAAGTGGAGAT+TGG | 0.341492 | 7_1:-17434915 | Msa1012380:CDS |
| AATATTAGTTGTAATTTCAT+TGG | 0.343241 | 7_1:-17432691 | Msa1012380:three_prime_UTR |
| TCGTGTTTCGGGTGGAGAAA+TGG | 0.348941 | 7_1:+17432515 | None:intergenic |
| GTACATTCAAACTCGTGTTT+CGG | 0.365449 | 7_1:+17432503 | None:intergenic |
| TGACTTTGAATGTTCACATT+TGG | 0.367584 | 7_1:-17432433 | Msa1012380:three_prime_UTR |
| CTCAATGTTGCAGGGTTCAT+AGG | 0.368762 | 7_1:-17433998 | Msa1012380:intron |
| TTTCTGATATCAAAAGAGAT+TGG | 0.374873 | 7_1:+17432600 | None:intergenic |
| AGAAGTAGATTCAGTTTAAG+TGG | 0.379934 | 7_1:-17434922 | Msa1012380:CDS |
| TGAATGTACATTCAGAAAAC+AGG | 0.393017 | 7_1:-17432489 | Msa1012380:three_prime_UTR |
| ATCAAATTGAAGCATTAAAC+AGG | 0.398350 | 7_1:-17432546 | Msa1012380:three_prime_UTR |
| TCTACTTCTCGAAATGTGTT+TGG | 0.403637 | 7_1:+17434936 | None:intergenic |
| ATCAAACAAAATACATGTAT+AGG | 0.419081 | 7_1:+17432734 | None:intergenic |
| TCATGTTGGAAGTCGAGAAA+TGG | 0.431456 | 7_1:+17432453 | None:intergenic |
| TTCTGATATCAAAAGAGATT+GGG | 0.435030 | 7_1:+17432601 | None:intergenic |
| CGTGTTTCGGGTGGAGAAAT+GGG | 0.435955 | 7_1:+17432516 | None:intergenic |
| TTCCTAGCACTGTATTTACA+TGG | 0.448057 | 7_1:-17433967 | Msa1012380:CDS |
| AGTTGACTTTAGCCTCTGCT+TGG | 0.453787 | 7_1:-17433457 | Msa1012380:CDS |
| GAACCATAAGGGTGTAAAAC+GGG | 0.460581 | 7_1:+17433927 | None:intergenic |
| AGATGGTCATGGTTTATAGA+TGG | 0.462348 | 7_1:-17432759 | Msa1012380:exon |
| TGTACCTTATTAAATGGTAA+TGG | 0.465204 | 7_1:+17435856 | None:intergenic |
| ACATGAGTAAGAATCCCAAT+TGG | 0.470965 | 7_1:+17432815 | None:intergenic |
| CCTTTCTCTATCAGGAGTGA+TGG | 0.472888 | 7_1:-17434964 | Msa1012380:CDS |
| TAAAACTCTGTAGGACAGTT+GGG | 0.479095 | 7_1:-17435005 | Msa1012380:CDS |
| ACCAAAACTACAAGAAAAGA+TGG | 0.507075 | 7_1:-17432776 | Msa1012380:CDS |
| ATAAAACTCTGTAGGACAGT+TGG | 0.510520 | 7_1:-17435006 | Msa1012380:CDS |
| CTGTTTCAGGTGTCCAAGAA+AGG | 0.512995 | 7_1:+17433644 | None:intergenic |
| AGAATGCCGAGCACTACATA+TGG | 0.521426 | 7_1:+17433685 | None:intergenic |
| CCATCACTCCTGATAGAGAA+AGG | 0.526576 | 7_1:+17434964 | None:intergenic |
| TGGGCAAAAGAACAAGCAAA+AGG | 0.529473 | 7_1:+17432835 | None:intergenic |
| TCTAGCCCCAAAATCCGATC+TGG | 0.530853 | 7_1:-17433906 | Msa1012380:intron |
| CATGAGTAAGAATCCCAATT+GGG | 0.537813 | 7_1:+17432816 | None:intergenic |
| GTGAACATTCAAAGTCATGT+TGG | 0.541816 | 7_1:+17432439 | None:intergenic |
| CCCCATGTAAATACAGTGCT+AGG | 0.554898 | 7_1:+17433965 | None:intergenic |
| TCCTAGCACTGTATTTACAT+GGG | 0.556570 | 7_1:-17433966 | Msa1012380:CDS |
| TCCTTGCAGCTTTCTAGCAT+AGG | 0.568671 | 7_1:-17433497 | Msa1012380:intron |
| AGAACCATAAGGGTGTAAAA+CGG | 0.570175 | 7_1:+17433926 | None:intergenic |
| AGTTTACCATATGTAGTGCT+CGG | 0.572021 | 7_1:-17433691 | Msa1012380:CDS |
| TATTCATATATATGAAGAAG+TGG | 0.572941 | 7_1:-17435961 | Msa1012380:five_prime_UTR |
| TCCAGGCATATATTTCATGA+TGG | 0.581090 | 7_1:-17432893 | Msa1012380:intron |
| CAGAAAGAAACGTACCAGAT+CGG | 0.600587 | 7_1:+17433892 | None:intergenic |
| ATTCAAACTCGTGTTTCGGG+TGG | 0.604313 | 7_1:+17432507 | None:intergenic |
| AACAACAGATTCAGCAACAA+TGG | 0.604765 | 7_1:+17435938 | None:intergenic |
| GGAGATTGGAGTTTCATAGG+AGG | 0.615543 | 7_1:-17434901 | Msa1012380:CDS |
| CCTAGCACTGTATTTACATG+GGG | 0.616641 | 7_1:-17433965 | Msa1012380:CDS |
| GAGATTGGAGTTTCATAGGA+GGG | 0.616886 | 7_1:-17434900 | Msa1012380:CDS |
| ACTACAAGAAAAGATGGTCA+TGG | 0.623185 | 7_1:-17432770 | Msa1012380:CDS |
| AAAACCAAAAGCTACAAGAT+CGG | 0.627640 | 7_1:-17434863 | Msa1012380:CDS |
| CAAAAGGTGAATCCAAGCAG+AGG | 0.662634 | 7_1:+17433445 | None:intergenic |
| TGAAGAATCAGATTGAAACT+CGG | 0.677130 | 7_1:-17432868 | Msa1012380:CDS |
| GGCAGGATATAAAACTCTGT+AGG | 0.684612 | 7_1:-17435014 | Msa1012380:intron |
| GAGTAAATACTTACTACCTG+AGG | 0.725135 | 7_1:-17433605 | Msa1012380:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTGATTTATAATCATTT+GGG | - | chr7_1:17433400-17433419 | Msa1012380:intron | 10.0% |
| !!! | TATATTTATCTTATCTTTTT+TGG | - | chr7_1:17433810-17433829 | Msa1012380:intron | 10.0% |
| !! | ATTTGTGTAAAATCAAAAAA+AGG | + | chr7_1:17432661-17432680 | None:intergenic | 15.0% |
| !!! | TTTTTTTGATTTTACACAAA+TGG | - | chr7_1:17432660-17432679 | Msa1012380:three_prime_UTR | 15.0% |
| !!! | TTTTTTGATTTTACACAAAT+GGG | - | chr7_1:17432661-17432680 | Msa1012380:three_prime_UTR | 15.0% |
| !!! | TTGTTTAAAACAAAACAAAT+AGG | - | chr7_1:17433152-17433171 | Msa1012380:intron | 15.0% |
| !!! | CATATTGATTTATAATCATT+TGG | - | chr7_1:17433399-17433418 | Msa1012380:intron | 15.0% |
| !!! | TATTGATTTATAATCATTTG+GGG | - | chr7_1:17433401-17433420 | Msa1012380:intron | 15.0% |
| !! | AACAAACAATAAAATAAAGT+TGG | + | chr7_1:17434049-17434068 | None:intergenic | 15.0% |
| !! | TAATTTCAGAAAAATTAATC+AGG | + | chr7_1:17434694-17434713 | None:intergenic | 15.0% |
| !! | AATATTAGTTGTAATTTCAT+TGG | - | chr7_1:17435745-17435764 | Msa1012380:intron | 15.0% |
| !! | TATTCATATATATGAAGAAG+TGG | - | chr7_1:17432475-17432494 | Msa1012380:three_prime_UTR | 20.0% |
| !! | TACAAAACAAAACAATGAAA+GGG | + | chr7_1:17432607-17432626 | None:intergenic | 20.0% |
| !! | TTACAAAACAAAACAATGAA+AGG | + | chr7_1:17432608-17432627 | None:intergenic | 20.0% |
| !!! | TTTTTGATTTTACACAAATG+GGG | - | chr7_1:17432662-17432681 | Msa1012380:three_prime_UTR | 20.0% |
| !! | TTTGTAATAGATTTGATGTT+AGG | - | chr7_1:17432838-17432857 | Msa1012380:CDS | 20.0% |
| !!! | AAATCTTCAATTTTAAGTGT+CGG | + | chr7_1:17433232-17433251 | None:intergenic | 20.0% |
| !! | AGTTTATTTATTCGTATGTA+TGG | - | chr7_1:17433331-17433350 | Msa1012380:intron | 20.0% |
| !!! | TTTTTCATGTAATCTAGAAT+TGG | - | chr7_1:17433653-17433672 | Msa1012380:CDS | 20.0% |
| !! | AATTTACCATTCAATAGAAT+TGG | - | chr7_1:17433697-17433716 | Msa1012380:CDS | 20.0% |
| !!! | ATTTATCTTATCTTTTTTGG+CGG | - | chr7_1:17433813-17433832 | Msa1012380:intron | 20.0% |
| !!! | AAACTATCTTAAAGCATTTA+AGG | + | chr7_1:17433993-17434012 | None:intergenic | 20.0% |
| !!! | CTCTATTCTTTTTAAGTTTT+TGG | - | chr7_1:17434151-17434170 | Msa1012380:intron | 20.0% |
| !! | ACATGAATAATTGTAGAAAA+GGG | + | chr7_1:17434219-17434238 | None:intergenic | 20.0% |
| !! | CAAAAGAATAACAGAAAATT+AGG | + | chr7_1:17434269-17434288 | None:intergenic | 20.0% |
| !!! | ACAATTCATATTCAGTTTTT+AGG | - | chr7_1:17434603-17434622 | Msa1012380:intron | 20.0% |
| !!! | TCCTTTTCATTTCATTTATT+TGG | - | chr7_1:17434653-17434672 | Msa1012380:intron | 20.0% |
| !! | ACCAAATAAATGAAATGAAA+AGG | + | chr7_1:17434657-17434676 | None:intergenic | 20.0% |
| !! | TTTAGATGTTCAAATATACA+TGG | - | chr7_1:17435288-17435307 | Msa1012380:intron | 20.0% |
| !! | AATATAATTGGGATGATTAA+TGG | + | chr7_1:17435317-17435336 | None:intergenic | 20.0% |
| !! | TGAAGATCATGAATATAATT+GGG | + | chr7_1:17435328-17435347 | None:intergenic | 20.0% |
| !! | ATCAAACAAAATACATGTAT+AGG | + | chr7_1:17435705-17435724 | None:intergenic | 20.0% |
| !!! | GTATTTTGTTTGATGAATTT+AGG | - | chr7_1:17435711-17435730 | Msa1012380:intron | 20.0% |
| !!! | AATTTCATTGGTACATTTTT+TGG | - | chr7_1:17435757-17435776 | Msa1012380:intron | 20.0% |
| ! | GAGAAAAAGTTAGCTAAAAT+TGG | + | chr7_1:17432430-17432449 | None:intergenic | 25.0% |
| ! | ATGAATATGAAGCTGAAATT+TGG | + | chr7_1:17432462-17432481 | None:intergenic | 25.0% |
| ! | TTCACCATTACCATTTAATA+AGG | - | chr7_1:17432576-17432595 | Msa1012380:three_prime_UTR | 25.0% |
| ! | TGTACCTTATTAAATGGTAA+TGG | + | chr7_1:17432583-17432602 | None:intergenic | 25.0% |
| !!! | TCTGCATTTTTTGTCTTTTT+TGG | - | chr7_1:17432633-17432652 | Msa1012380:three_prime_UTR | 25.0% |
| ! | ATTTCACATTAGTAATGCAT+TGG | + | chr7_1:17432770-17432789 | None:intergenic | 25.0% |
| ! | AATGCATTACTAATGTGAAA+TGG | - | chr7_1:17432769-17432788 | Msa1012380:CDS | 25.0% |
| ! | ATGCATTACTAATGTGAAAT+GGG | - | chr7_1:17432770-17432789 | Msa1012380:CDS | 25.0% |
| ! | TGATATGTTATAATGCATGT+TGG | - | chr7_1:17433003-17433022 | Msa1012380:intron | 25.0% |
| !!! | TTTTGTTTTAAACAACCTAG+CGG | + | chr7_1:17433147-17433166 | None:intergenic | 25.0% |
| ! | GAGTTTGTATTTCAAAAAGT+TGG | - | chr7_1:17433174-17433193 | Msa1012380:intron | 25.0% |
| !!! | TTTTGGTTTTACAACAATTC+TGG | + | chr7_1:17433563-17433582 | None:intergenic | 25.0% |
| ! | TGAAAAAGTAGCATGAAAAA+AGG | + | chr7_1:17433640-17433659 | None:intergenic | 25.0% |
| !!! | TGAGCATAATGGATATATTT+AGG | - | chr7_1:17433733-17433752 | Msa1012380:intron | 25.0% |
| ! | CACATGAATAATTGTAGAAA+AGG | + | chr7_1:17434220-17434239 | None:intergenic | 25.0% |
| !! | CTTTTCTACAATTATTCATG+TGG | - | chr7_1:17434218-17434237 | Msa1012380:intron | 25.0% |
| ! | TAACAATCTATTCGATTCAA+TGG | + | chr7_1:17434338-17434357 | None:intergenic | 25.0% |
| ! | AATTGCTTGTTCTGTATAAA+TGG | - | chr7_1:17434396-17434415 | Msa1012380:intron | 25.0% |
| ! | AATATAGACCAAAAAGTCTA+TGG | - | chr7_1:17434717-17434736 | Msa1012380:intron | 25.0% |
| !! | AAGGAGTATGCAAATATAAA+CGG | + | chr7_1:17434924-17434943 | None:intergenic | 25.0% |
| ! | ACAAAAAATCGAGAACAATT+TGG | - | chr7_1:17435132-17435151 | Msa1012380:intron | 25.0% |
| ! | TTTGAACATCTAAAAACCAT+TGG | + | chr7_1:17435282-17435301 | None:intergenic | 25.0% |
| ! | CTGAAGATCATGAATATAAT+TGG | + | chr7_1:17435329-17435348 | None:intergenic | 25.0% |
| ! | CAATTATATTCATGATCTTC+AGG | - | chr7_1:17435327-17435346 | Msa1012380:intron | 25.0% |
| ! | TAACACAGATTAACAGATTA+TGG | + | chr7_1:17435381-17435400 | None:intergenic | 25.0% |
| ! | ATTAATGACATTCAAAACTG+TGG | - | chr7_1:17435434-17435453 | Msa1012380:intron | 25.0% |
| !! | TATTTCTCTGACAGTATTTT+TGG | - | chr7_1:17435513-17435532 | Msa1012380:intron | 25.0% |
| ! | TTCTGATATCAAAAGAGATT+GGG | + | chr7_1:17435838-17435857 | None:intergenic | 25.0% |
| ! | TTTCTGATATCAAAAGAGAT+TGG | + | chr7_1:17435839-17435858 | None:intergenic | 25.0% |
| !! | ATCTCTTTTGATATCAGAAA+TGG | - | chr7_1:17435839-17435858 | Msa1012380:intron | 25.0% |
| !! | ATCAAATTGAAGCATTAAAC+AGG | - | chr7_1:17435890-17435909 | Msa1012380:exon | 25.0% |
| AAGGGTTGTACCTTATTAAA+TGG | + | chr7_1:17432589-17432608 | None:intergenic | 30.0% | |
| CAGAGAAATTTGATATGTTG+TGG | - | chr7_1:17433066-17433085 | Msa1012380:intron | 30.0% | |
| TGCTAAGAAGTTGAAAATGA+GGG | + | chr7_1:17433104-17433123 | None:intergenic | 30.0% | |
| ! | ATTTTCAACTTCTTAGCACT+TGG | - | chr7_1:17433106-17433125 | Msa1012380:intron | 30.0% |
| ! | TGAATTTTCCTTTCTCTATC+AGG | - | chr7_1:17433464-17433483 | Msa1012380:CDS | 30.0% |
| AGAAGTAGATTCAGTTTAAG+TGG | - | chr7_1:17433514-17433533 | Msa1012380:intron | 30.0% | |
| AAAACCAAAAGCTACAAGAT+CGG | - | chr7_1:17433573-17433592 | Msa1012380:intron | 30.0% | |
| !! | GTATTTGACTTCTTTTTGGA+TGG | + | chr7_1:17433603-17433622 | None:intergenic | 30.0% |
| !! | GCATGTATTTGACTTCTTTT+TGG | + | chr7_1:17433607-17433626 | None:intergenic | 30.0% |
| ! | GGTTCTTTTGCAAAAATTGT+TGG | - | chr7_1:17433754-17433773 | Msa1012380:intron | 30.0% |
| CAAAAATTGTTGGATCTGTA+AGG | - | chr7_1:17433764-17433783 | Msa1012380:intron | 30.0% | |
| TCGTAAAGTAGGTTACTATT+AGG | - | chr7_1:17433841-17433860 | Msa1012380:intron | 30.0% | |
| CGTAAAGTAGGTTACTATTA+GGG | - | chr7_1:17433842-17433861 | Msa1012380:intron | 30.0% | |
| !! | AAGTTTTTGGAGACAAGTTA+TGG | - | chr7_1:17434164-17434183 | Msa1012380:intron | 30.0% |
| ! | ACTACTTTCCATAGACTTTT+TGG | + | chr7_1:17434728-17434747 | None:intergenic | 30.0% |
| AAAATCAATCGAACTGTTTC+AGG | + | chr7_1:17434808-17434827 | None:intergenic | 30.0% | |
| CAAAAAGATCAACAACCAAA+AGG | + | chr7_1:17435010-17435029 | None:intergenic | 30.0% | |
| GAAATCACAAAAGATACAAC+AGG | + | chr7_1:17435042-17435061 | None:intergenic | 30.0% | |
| TTGGATAATTAATGCCGTTA+AGG | - | chr7_1:17435151-17435170 | Msa1012380:intron | 30.0% | |
| AATGCAATTAACCCTGAATT+TGG | - | chr7_1:17435246-17435265 | Msa1012380:intron | 30.0% | |
| AAACTATACACATGATATCG+TGG | - | chr7_1:17435400-17435419 | Msa1012380:intron | 30.0% | |
| !!! | GTATTTTTGGTTCAAAATCC+AGG | - | chr7_1:17435526-17435545 | Msa1012380:intron | 30.0% |
| TGAAGAATCAGATTGAAACT+CGG | - | chr7_1:17435568-17435587 | Msa1012380:intron | 30.0% | |
| ACCAAAACTACAAGAAAAGA+TGG | - | chr7_1:17435660-17435679 | Msa1012380:intron | 30.0% | |
| ! | ACCATCTTTTCTTGTAGTTT+TGG | + | chr7_1:17435664-17435683 | None:intergenic | 30.0% |
| TGAATGTACATTCAGAAAAC+AGG | - | chr7_1:17435947-17435966 | Msa1012380:five_prime_UTR | 30.0% | |
| TGACTTTGAATGTTCACATT+TGG | - | chr7_1:17436003-17436022 | Msa1012380:five_prime_UTR | 30.0% | |
| AACAACAGATTCAGCAACAA+TGG | + | chr7_1:17432501-17432520 | None:intergenic | 35.0% | |
| ATTTGATGTTAGGTGCATGT+TGG | - | chr7_1:17432848-17432867 | Msa1012380:CDS | 35.0% | |
| TGTTTGTGTAAGTGCTTCAT+AGG | - | chr7_1:17432915-17432934 | Msa1012380:intron | 35.0% | |
| AGTGCTTCATAGGCAATAAA+AGG | - | chr7_1:17432925-17432944 | Msa1012380:intron | 35.0% | |
| GTGCTTCATAGGCAATAAAA+GGG | - | chr7_1:17432926-17432945 | Msa1012380:intron | 35.0% | |
| CCATATGAGTTATACTTACG+CGG | + | chr7_1:17432963-17432982 | None:intergenic | 35.0% | |
| CTGCAACATTCTATCATATG+AGG | + | chr7_1:17433049-17433068 | None:intergenic | 35.0% | |
| AATTTGATATGTTGTGGCGT+CGG | - | chr7_1:17433072-17433091 | Msa1012380:intron | 35.0% | |
| GCTAAGAAGTTGAAAATGAG+GGG | + | chr7_1:17433103-17433122 | None:intergenic | 35.0% | |
| GTGCTAAGAAGTTGAAAATG+AGG | + | chr7_1:17433105-17433124 | None:intergenic | 35.0% | |
| TTGTGTCATCAAACCAACTT+TGG | - | chr7_1:17433202-17433221 | Msa1012380:intron | 35.0% | |
| TTGAAGATTTGTCCAGTGTT+TGG | - | chr7_1:17433242-17433261 | Msa1012380:intron | 35.0% | |
| ! | GATTTATAATCATTTGGGGC+AGG | - | chr7_1:17433405-17433424 | Msa1012380:intron | 35.0% |
| ATAAAACTCTGTAGGACAGT+TGG | - | chr7_1:17433430-17433449 | Msa1012380:CDS | 35.0% | |
| TAAAACTCTGTAGGACAGTT+GGG | - | chr7_1:17433431-17433450 | Msa1012380:CDS | 35.0% | |
| TCTACTTCTCGAAATGTGTT+TGG | + | chr7_1:17433503-17433522 | None:intergenic | 35.0% | |
| GATTCAGTTTAAGTGGAGAT+TGG | - | chr7_1:17433521-17433540 | Msa1012380:intron | 35.0% | |
| TCACAGCCAATTCTATTGAA+TGG | + | chr7_1:17433706-17433725 | None:intergenic | 35.0% | |
| TTCAATAGAATTGGCTGTGA+AGG | - | chr7_1:17433706-17433725 | Msa1012380:CDS | 35.0% | |
| GTGAAGGAATTTGAGCATAA+TGG | - | chr7_1:17433722-17433741 | Msa1012380:intron | 35.0% | |
| AAGTCTCAAACAGTCTTACT+AGG | + | chr7_1:17433911-17433930 | None:intergenic | 35.0% | |
| CTAAGCTGTTTATCCAAACA+GGG | - | chr7_1:17434112-17434131 | Msa1012380:intron | 35.0% | |
| GAAAAGGGAATACATGCAAA+AGG | + | chr7_1:17434204-17434223 | None:intergenic | 35.0% | |
| AGCCTTGAACAAACACATTT+AGG | - | chr7_1:17434306-17434325 | Msa1012380:intron | 35.0% | |
| GACCTAAATGTGTTTGTTCA+AGG | + | chr7_1:17434311-17434330 | None:intergenic | 35.0% | |
| TGCTTGTTCTGTATAAATGG+TGG | - | chr7_1:17434399-17434418 | Msa1012380:intron | 35.0% | |
| !! | TTGTTTTACCTCAATGTTGC+AGG | - | chr7_1:17434429-17434448 | Msa1012380:intron | 35.0% |
| ! | TGTTTTACCTCAATGTTGCA+GGG | - | chr7_1:17434430-17434449 | Msa1012380:intron | 35.0% |
| TTCCTAGCACTGTATTTACA+TGG | - | chr7_1:17434469-17434488 | Msa1012380:intron | 35.0% | |
| TCCTAGCACTGTATTTACAT+GGG | - | chr7_1:17434470-17434489 | Msa1012380:intron | 35.0% | |
| ! | AGAACCATAAGGGTGTAAAA+CGG | + | chr7_1:17434513-17434532 | None:intergenic | 35.0% |
| AGTTTACCATATGTAGTGCT+CGG | - | chr7_1:17434745-17434764 | Msa1012380:intron | 35.0% | |
| GAGTAAATACTTACTACCTG+AGG | - | chr7_1:17434831-17434850 | Msa1012380:CDS | 35.0% | |
| ! | TTGTTGATCTTTTTGCTGCA+AGG | - | chr7_1:17435015-17435034 | Msa1012380:intron | 35.0% |
| CAGCAATAACGAGGAAAATT+GGG | + | chr7_1:17435072-17435091 | None:intergenic | 35.0% | |
| ATGAAAAACCAGCAATAACG+AGG | + | chr7_1:17435081-17435100 | None:intergenic | 35.0% | |
| ! | ATTAATGCCGTTAAGGTATC+TGG | - | chr7_1:17435158-17435177 | Msa1012380:intron | 35.0% |
| ATCTGGTTGATCGTATTAAG+TGG | - | chr7_1:17435175-17435194 | Msa1012380:intron | 35.0% | |
| GTCACAACTCATTAATCATC+CGG | - | chr7_1:17435221-17435240 | Msa1012380:intron | 35.0% | |
| TCAGGGTTAATTGCATTAAC+CGG | + | chr7_1:17435243-17435262 | None:intergenic | 35.0% | |
| GTTTATGACGTCCAAATTCA+GGG | + | chr7_1:17435260-17435279 | None:intergenic | 35.0% | |
| ATTTGGACGTCATAAACCAA+TGG | - | chr7_1:17435263-17435282 | Msa1012380:intron | 35.0% | |
| TCCAGGCATATATTTCATGA+TGG | - | chr7_1:17435543-17435562 | Msa1012380:intron | 35.0% | |
| TCCATCATGAAATATATGCC+TGG | + | chr7_1:17435547-17435566 | None:intergenic | 35.0% | |
| CATGAGTAAGAATCCCAATT+GGG | + | chr7_1:17435623-17435642 | None:intergenic | 35.0% | |
| ACATGAGTAAGAATCCCAAT+TGG | + | chr7_1:17435624-17435643 | None:intergenic | 35.0% | |
| !!! | TGTAGTTTTGGTCATTGCTT+TGG | + | chr7_1:17435652-17435671 | None:intergenic | 35.0% |
| ACTACAAGAAAAGATGGTCA+TGG | - | chr7_1:17435666-17435685 | Msa1012380:intron | 35.0% | |
| AGATGGTCATGGTTTATAGA+TGG | - | chr7_1:17435677-17435696 | Msa1012380:intron | 35.0% | |
| TACATTCAAACTCGTGTTTC+GGG | + | chr7_1:17435935-17435954 | None:intergenic | 35.0% | |
| GTACATTCAAACTCGTGTTT+CGG | + | chr7_1:17435936-17435955 | None:intergenic | 35.0% | |
| GTGAACATTCAAAGTCATGT+TGG | + | chr7_1:17436000-17436019 | None:intergenic | 35.0% | |
| CCGCGTAAGTATAACTCATA+TGG | - | chr7_1:17432960-17432979 | Msa1012380:intron | 40.0% | |
| TCAACTTCTTAGCACTTGGT+TGG | - | chr7_1:17433110-17433129 | Msa1012380:intron | 40.0% | |
| TTCAATGTAACCGCATATGC+CGG | + | chr7_1:17433287-17433306 | None:intergenic | 40.0% | |
| GGCAGGATATAAAACTCTGT+AGG | - | chr7_1:17433422-17433441 | Msa1012380:CDS | 40.0% | |
| AGTGGAGATTGGAGTTTCAT+AGG | - | chr7_1:17433532-17433551 | Msa1012380:intron | 40.0% | |
| GAGATTGGAGTTTCATAGGA+GGG | - | chr7_1:17433536-17433555 | Msa1012380:intron | 40.0% | |
| GGTTACTATTAGGGCATGTT+TGG | - | chr7_1:17433851-17433870 | Msa1012380:intron | 40.0% | |
| GCTAAGCTGTTTATCCAAAC+AGG | - | chr7_1:17434111-17434130 | Msa1012380:intron | 40.0% | |
| AGAAAAGACAAGACCCTGTT+TGG | + | chr7_1:17434128-17434147 | None:intergenic | 40.0% | |
| CCTAGCACTGTATTTACATG+GGG | - | chr7_1:17434471-17434490 | Msa1012380:intron | 40.0% | |
| ! | GAACCATAAGGGTGTAAAAC+GGG | + | chr7_1:17434512-17434531 | None:intergenic | 40.0% |
| !!! | TTTTGGGGCTAGAACCATAA+GGG | + | chr7_1:17434523-17434542 | None:intergenic | 40.0% |
| !!! | ATTTTGGGGCTAGAACCATA+AGG | + | chr7_1:17434524-17434543 | None:intergenic | 40.0% |
| ! | AACGTACCAGATCGGATTTT+GGG | + | chr7_1:17434539-17434558 | None:intergenic | 40.0% |
| ! | AAACGTACCAGATCGGATTT+TGG | + | chr7_1:17434540-17434559 | None:intergenic | 40.0% |
| CAGAAAGAAACGTACCAGAT+CGG | + | chr7_1:17434547-17434566 | None:intergenic | 40.0% | |
| !! | CTTATTTGCTGTGCCTTTCT+TGG | - | chr7_1:17434779-17434798 | Msa1012380:intron | 40.0% |
| GATGAATGAATACACACCTC+AGG | + | chr7_1:17434850-17434869 | None:intergenic | 40.0% | |
| CCAGCAATAACGAGGAAAAT+TGG | + | chr7_1:17435073-17435092 | None:intergenic | 40.0% | |
| ! | CCAATTTTCCTCGTTATTGC+TGG | - | chr7_1:17435070-17435089 | Msa1012380:intron | 40.0% |
| CGATCAACCAGATACCTTAA+CGG | + | chr7_1:17435168-17435187 | None:intergenic | 40.0% | |
| GGTTGATCGTATTAAGTGGT+TGG | - | chr7_1:17435179-17435198 | Msa1012380:intron | 40.0% | |
| GGTTTATGACGTCCAAATTC+AGG | + | chr7_1:17435261-17435280 | None:intergenic | 40.0% | |
| TGGGCAAAAGAACAAGCAAA+AGG | + | chr7_1:17435604-17435623 | None:intergenic | 40.0% | |
| ! | TGCTTGTTCTTTTGCCCAAT+TGG | - | chr7_1:17435606-17435625 | Msa1012380:intron | 40.0% |
| ! | GCTTGTTCTTTTGCCCAATT+GGG | - | chr7_1:17435607-17435626 | Msa1012380:intron | 40.0% |
| TCATGTTGGAAGTCGAGAAA+TGG | + | chr7_1:17435986-17436005 | None:intergenic | 40.0% | |
| CCATCACTCCTGATAGAGAA+AGG | + | chr7_1:17433475-17433494 | None:intergenic | 45.0% | |
| CCTTTCTCTATCAGGAGTGA+TGG | - | chr7_1:17433472-17433491 | Msa1012380:CDS | 45.0% | |
| GGAGATTGGAGTTTCATAGG+AGG | - | chr7_1:17433535-17433554 | Msa1012380:intron | 45.0% | |
| ! | CGAACCGATCTTGTAGCTTT+TGG | + | chr7_1:17433580-17433599 | None:intergenic | 45.0% |
| TGGCGGCATTATCGTAAAGT+AGG | - | chr7_1:17433830-17433849 | Msa1012380:intron | 45.0% | |
| ! | GACTGTTTGAGACTTGAGAG+AGG | - | chr7_1:17433916-17433935 | Msa1012380:CDS | 45.0% |
| ACTCGAATAGCTGAGATCAG+CGG | + | chr7_1:17434244-17434263 | None:intergenic | 45.0% | |
| CTATGAACCCTGCAACATTG+AGG | + | chr7_1:17434440-17434459 | None:intergenic | 45.0% | |
| CTCAATGTTGCAGGGTTCAT+AGG | - | chr7_1:17434438-17434457 | Msa1012380:intron | 45.0% | |
| CCCCATGTAAATACAGTGCT+AGG | + | chr7_1:17434474-17434493 | None:intergenic | 45.0% | |
| ! | ACGTACCAGATCGGATTTTG+GGG | + | chr7_1:17434538-17434557 | None:intergenic | 45.0% |
| AGAATGCCGAGCACTACATA+TGG | + | chr7_1:17434754-17434773 | None:intergenic | 45.0% | |
| ! | CTGTTTCAGGTGTCCAAGAA+AGG | + | chr7_1:17434795-17434814 | None:intergenic | 45.0% |
| ! | TCCTTGCAGCTTTCTAGCAT+AGG | - | chr7_1:17434939-17434958 | Msa1012380:CDS | 45.0% |
| TCCTATGCTAGAAAGCTGCA+AGG | + | chr7_1:17434943-17434962 | None:intergenic | 45.0% | |
| ! | AGTTGACTTTAGCCTCTGCT+TGG | - | chr7_1:17434979-17434998 | Msa1012380:CDS | 45.0% |
| CAAAAGGTGAATCCAAGCAG+AGG | + | chr7_1:17434994-17435013 | None:intergenic | 45.0% | |
| ! | CTCTGCTTGGATTCACCTTT+TGG | - | chr7_1:17434992-17435011 | Msa1012380:CDS | 45.0% |
| ATTCAAACTCGTGTTTCGGG+TGG | + | chr7_1:17435932-17435951 | None:intergenic | 45.0% | |
| ! | TTGGTGTGAGTTTTGCCGCT+AGG | - | chr7_1:17433129-17433148 | Msa1012380:intron | 50.0% |
| !! | AAGTGTCGGTGCTCCAAAGT+TGG | + | chr7_1:17433218-17433237 | None:intergenic | 50.0% |
| CATCGACACATGCCAAACAC+TGG | + | chr7_1:17433257-17433276 | None:intergenic | 50.0% | |
| ! | CATGTGTCGATGTCCAACAC+CGG | - | chr7_1:17433265-17433284 | Msa1012380:intron | 50.0% |
| ATGTCCAACACCGGCATATG+CGG | - | chr7_1:17433274-17433293 | Msa1012380:intron | 50.0% | |
| ! | GCTCCCGTTTTACACCCTTA+TGG | - | chr7_1:17434506-17434525 | Msa1012380:intron | 50.0% |
| TCTAGCCCCAAAATCCGATC+TGG | - | chr7_1:17434530-17434549 | Msa1012380:intron | 50.0% | |
| ! | CGTGTTTCGGGTGGAGAAAT+GGG | + | chr7_1:17435923-17435942 | None:intergenic | 50.0% |
| ! | TCGTGTTTCGGGTGGAGAAA+TGG | + | chr7_1:17435924-17435943 | None:intergenic | 50.0% |
| GTAACCGCATATGCCGGTGT+TGG | + | chr7_1:17433281-17433300 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 17432425 | 17436033 | 17432425 | ID=Msa1012380;Name=Msa1012380 |
| chr7_1 | mRNA | 17432425 | 17436033 | 17432425 | ID=Msa1012380-mRNA-1;Parent=Msa1012380;Name=Msa1012380-mRNA-1;_AED=0.08;_eAED=0.08;_QI=125|1|1|1|1|1|6|338|239 |
| chr7_1 | exon | 17432425 | 17432910 | 17432425 | ID=Msa1012380-mRNA-1:exon:4416;Parent=Msa1012380-mRNA-1 |
| chr7_1 | exon | 17433422 | 17433510 | 17433422 | ID=Msa1012380-mRNA-1:exon:4415;Parent=Msa1012380-mRNA-1 |
| chr7_1 | exon | 17433606 | 17433734 | 17433606 | ID=Msa1012380-mRNA-1:exon:4414;Parent=Msa1012380-mRNA-1 |
| chr7_1 | exon | 17433907 | 17434007 | 17433907 | ID=Msa1012380-mRNA-1:exon:4413;Parent=Msa1012380-mRNA-1 |
| chr7_1 | exon | 17434827 | 17435031 | 17434827 | ID=Msa1012380-mRNA-1:exon:4412;Parent=Msa1012380-mRNA-1 |
| chr7_1 | exon | 17435861 | 17436033 | 17435861 | ID=Msa1012380-mRNA-1:exon:4411;Parent=Msa1012380-mRNA-1 |
| chr7_1 | five_prime_UTR | 17435909 | 17436033 | 17435909 | ID=Msa1012380-mRNA-1:five_prime_utr;Parent=Msa1012380-mRNA-1 |
| chr7_1 | CDS | 17435861 | 17435908 | 17435861 | ID=Msa1012380-mRNA-1:cds;Parent=Msa1012380-mRNA-1 |
| chr7_1 | CDS | 17434827 | 17435031 | 17434827 | ID=Msa1012380-mRNA-1:cds;Parent=Msa1012380-mRNA-1 |
| chr7_1 | CDS | 17433907 | 17434007 | 17433907 | ID=Msa1012380-mRNA-1:cds;Parent=Msa1012380-mRNA-1 |
| chr7_1 | CDS | 17433606 | 17433734 | 17433606 | ID=Msa1012380-mRNA-1:cds;Parent=Msa1012380-mRNA-1 |
| chr7_1 | CDS | 17433422 | 17433510 | 17433422 | ID=Msa1012380-mRNA-1:cds;Parent=Msa1012380-mRNA-1 |
| chr7_1 | CDS | 17432763 | 17432910 | 17432763 | ID=Msa1012380-mRNA-1:cds;Parent=Msa1012380-mRNA-1 |
| chr7_1 | three_prime_UTR | 17432425 | 17432762 | 17432425 | ID=Msa1012380-mRNA-1:three_prime_utr;Parent=Msa1012380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
