AlfalfaGEDB | Msa1033230

M. sativa cultivar zhongmu-4 / Msa1033230

KEGG: K14638
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0008150 GO:0010336 GO:0016020 GO:0031982 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044464 GO:0048878 GO:0050801 GO:0055081 GO:0055088 GO:0065007 GO:0065008 GO:0071944 GO:0097708
PFAM: PF00854.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033230	XP_003624896.1	98.369	613	10	0	1	613	1	613	0.0	1255

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033230	sp\|Q9SX20\|PTR18_ARATH	55.316	602	255	5	3	596	1	596	0.0	665

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033230	G7L4V0	98.369	613	10	0	1	613	1	613	0.0	1255

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0035090	Msa1033230	0.815775	7.775544e-52	-8.615850e-47
Msa0039200	Msa1033230	0.839026	2.026220e-57	-8.615850e-47
Msa0057740	Msa1033230	0.809813	1.571614e-50	-8.615850e-47
Msa0065190	Msa1033230	0.801675	8.052757e-49	-8.615850e-47
Msa0083570	Msa1033230	0.814458	1.524960e-51	-8.615850e-47
Msa0086820	Msa1033230	0.834545	2.817777e-56	-8.615850e-47
Msa0087780	Msa1033230	0.826303	2.920743e-54	-8.615850e-47
Msa0087790	Msa1033230	0.825506	4.516330e-54	-8.615850e-47
Msa0087880	Msa1033230	0.812316	4.506819e-51	-8.615850e-47
Msa0095140	Msa1033230	0.828237	1.005181e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033230	MtrunA17_Chr7g0255601	98.369	613	10	0	1	613	1	613	0.0	1255
Msa1033230	MtrunA17_Chr7g0255621	74.388	613	149	3	1	613	1	605	0.0	965
Msa1033230	MtrunA17_Chr7g0255611	73.684	589	153	2	1	587	1	589	0.0	939
Msa1033230	MtrunA17_Chr5g0422881	57.705	584	233	5	19	593	10	588	0.0	697
Msa1033230	MtrunA17_Chr4g0005901	42.142	579	321	9	1	574	4	573	4.60e-160	471
Msa1033230	MtrunA17_Chr8g0375291	41.516	554	317	6	15	566	28	576	9.30e-157	462
Msa1033230	MtrunA17_Chr8g0375311	39.821	560	330	6	15	572	28	582	1.77e-154	456
Msa1033230	MtrunA17_Chr7g0241741	40.806	571	321	6	13	574	1	563	2.18e-153	453
Msa1033230	MtrunA17_Chr3g0104011	39.965	568	331	7	8	572	3	563	5.35e-152	449
Msa1033230	MtrunA17_Chr5g0415791	40.893	582	329	7	17	590	19	593	2.40e-149	444

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1033230	AT1G68570.1	55.316	602	255	5	3	596	1	596	0.0	665
Msa1033230	AT1G68570.2	56.738	564	234	3	41	596	5	566	0.0	645
Msa1033230	AT1G62200.1	41.434	572	313	9	4	565	22	581	1.83e-155	459
Msa1033230	AT5G01180.2	40.070	574	331	8	1	572	1	563	1.92e-154	456
Msa1033230	AT5G01180.3	40.070	574	331	8	1	572	1	563	1.92e-154	456
Msa1033230	AT5G01180.1	40.070	574	331	8	1	572	1	563	1.92e-154	456
Msa1033230	AT3G54140.1	40.000	570	325	7	13	572	1	563	3.02e-154	456
Msa1033230	AT3G54140.2	40.000	570	325	7	13	572	1	563	3.02e-154	456
Msa1033230	AT2G02040.1	40.208	577	331	8	3	572	12	581	9.89e-153	452
Msa1033230	AT1G62200.2	39.434	601	313	10	4	565	22	610	6.81e-149	444

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Find 166 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAACCACCCTCGACG+AGG	0.704705	7_1:-68280344	Msa1033230:CDS
AAAATTCCTGAAGCCCAAAT+TGG	0.383299	7_1:+68276616	None:intergenic
AAACCAGCTAAGGATATAGT+TGG	0.516141	7_1:-68280495	Msa1033230:five_prime_UTR
AAACCTTAATAGGGGTAGAT+TGG	0.426189	7_1:-68276029	Msa1033230:CDS
AAATAGTGCCCCAATAAGAG+GGG	0.714886	7_1:+68278270	None:intergenic
AAGAAACCAGTTCATAGATG+AGG	0.629019	7_1:+68278203	None:intergenic
AAGAATGGGAGTAGGGTTTG+TGG	0.510214	7_1:-68276380	Msa1033230:CDS
AAGATAATGTGGGTTGGGGT+TGG	0.344337	7_1:-68277496	Msa1033230:CDS
AAGGAGCAAGGAAGAAGATT+TGG	0.362257	7_1:-68275903	Msa1033230:CDS
AATACACTCACAAACTTTGG+TGG	0.458410	7_1:-68278307	Msa1033230:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTATATCACAAACCAGCTA+AGG	-	chr7_1:68275597-68275616	Msa1033230:three_prime_UTR	30.0%
CAAGAATGAAAGGTAATGTT+CGG	+	chr7_1:68275790-68275809	None:intergenic	30.0%
AAAAAACCATGAATGAGAAG+GGG	+	chr7_1:68275902-68275921	None:intergenic	30.0%
TTCTAATACATTCACTTGCA+TGG	-	chr7_1:68276271-68276290	Msa1033230:CDS	30.0%
TGTTATACTCATCTCAAACT+TGG	-	chr7_1:68276546-68276565	Msa1033230:CDS	30.0%
TCCTACCCAAAAAAAAAATG+TGG	-	chr7_1:68276853-68276872	Msa1033230:intron	30.0%
CCCAAAAAAAAAATGTGGTT+TGG	-	chr7_1:68276858-68276877	Msa1033230:intron	30.0%
TGTATATCACTTGACTGATT+GGG	-	chr7_1:68276893-68276912	Msa1033230:intron	30.0%
GACAAAAACTATGAAATCGA+TGG	+	chr7_1:68277062-68277081	None:intergenic	30.0%
GAAACTTCATCAAACAAACA+AGG	+	chr7_1:68277419-68277438	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	68275595	68280529	68275595	ID=Msa1033230;Name=Msa1033230
chr7_1	mRNA	68275595	68280529	68275595	ID=Msa1033230-mRNA-1;Parent=Msa1033230;Name=Msa1033230-mRNA-1;_AED=0.04;_eAED=0.04;_QI=94\|1\|1\|1\|1\|1\|4\|225\|613
chr7_1	exon	68275595	68276762	68275595	ID=Msa1033230-mRNA-1:exon:15908;Parent=Msa1033230-mRNA-1
chr7_1	exon	68277254	68277813	68277254	ID=Msa1033230-mRNA-1:exon:15907;Parent=Msa1033230-mRNA-1
chr7_1	exon	68278210	68278427	68278210	ID=Msa1033230-mRNA-1:exon:15906;Parent=Msa1033230-mRNA-1
chr7_1	exon	68280315	68280529	68280315	ID=Msa1033230-mRNA-1:exon:15905;Parent=Msa1033230-mRNA-1
chr7_1	five_prime_UTR	68280436	68280529	68280436	ID=Msa1033230-mRNA-1:five_prime_utr;Parent=Msa1033230-mRNA-1
chr7_1	CDS	68280315	68280435	68280315	ID=Msa1033230-mRNA-1:cds;Parent=Msa1033230-mRNA-1
chr7_1	CDS	68278210	68278427	68278210	ID=Msa1033230-mRNA-1:cds;Parent=Msa1033230-mRNA-1
chr7_1	CDS	68277254	68277813	68277254	ID=Msa1033230-mRNA-1:cds;Parent=Msa1033230-mRNA-1
chr7_1	CDS	68275820	68276762	68275820	ID=Msa1033230-mRNA-1:cds;Parent=Msa1033230-mRNA-1
chr7_1	three_prime_UTR	68275595	68275819	68275595	ID=Msa1033230-mRNA-1:three_prime_utr;Parent=Msa1033230-mRNA-1

Gene Sequence

>Msa1033230

ATGGAGATAGAGAAGGGGATTAAGAACAATATGGAAATGGTAGAAAAAGAAGTGGAGACAGACAGCAAGAAAATGAACCACCCTCGACGAGGAGGAATCCGAACATTACCTTTCATTCTTGCAAATGAAGTATGTGATAGATTTGCGGGCGCTGGATTTCACAGTAACTTGATAAGTTACCTAACCCAAGAGTTGAATATGCCATTGGTAGCAGCTTCAAATACACTCACAAACTTTGGTGGAACATCTAGCTTCACCCCTCTTATTGGGGCACTATTTGCAGACTCATTTGCTGGACGATTTTGGACCATCACTGTTGGATGCCTCATCTATGAACTGGGATTGATTAGTATCACTGTATCAACTATACTACCACATTTCCGTCCTCCACCATGTCCAACACAAGTAAATTGCAAAGAAGCCACATCTTCACAATTATTACCACTCTACATGTCTCTCCTCCTCACATCTCTTGGATCAGGTGGCATTAGACCTTGTGTTGTACCTTTTTCAGCAGACCAATTCGACATGTCAAAAGACGGTGTAGCTTCTAGGAAATGGAACCTCTTCAATTGGTACTTTTTCATCATGGGTTTTGCTTCTCTAAGTGCTTTGACCATTGTGGTTTATGTTCAAGATAATGTGGGTTGGGGTTGGGGACTTGGCATTCCAACCATTGCTATGATGATATCAGTAATTTCATTTGTGTTGGGCTCACCATTGTATAAGACTGTGAAACCAGAAGGAAGTCCTTTGACTCGTTTGGCTCAAGTGGTTGTGGCTGCTGTAAAGAAAAGGAAGGAGACATTACCTGATGACCCTAAATTTCTATACCACAATAGGGAGCTTGATGCTGCTATTTCTTTAGAAGGAAGTCTTTTACACTCAAATCAATATAAATGGTTGGACAAAGCTGCAATTGTCACAGAAGAAGAGGCCAAAGATTCAAATGCACCACCAAACCTTTGGAATTTAGTCACTGTCCATAGAGTTGAGGAACTGAAAGCTATCATTAGAATGCTTCCAATTTGGGCTTCAGGAATTTTGCTCATAATGTCTTCATCACATTTAGGTAGTTTTGTCATTCAACAAGCTCGTTCGATGGACCGTCACCTCACTCATTCATTCCAAATTGCACCAGCCAATATGTCAATTTTTGGTGTCCTAACCATGATGATAGGAGTTATGCTATACGAACGCTTTTTCGTCCCATTCGCCCGTAGATTCACAAAGAATCCTGCTGGAATCACATGTTTACAAAGAATGGGAGTAGGGTTTGTGGTTAACATTATAGCTACTATAGTTTCAGCACTAGTGGAAATGAAAAGAAAAACAGTTGCTGCAAAGTTTAACTTATTGGATGATCCAAAAGCAATAATCCCTATAAGTGTATTTTGGTTAGTACCTCAATATTGTCTTCATGGTGTGGCTGAAGTTTTCATGTCTGTTGGACATTTGGAATTTCTCTTTGATCAATCACCTGAAAGTATGAGAAGTAGTGCTACTGCTTTGTATTGCATAACTACAGCCATTGGTAATTATTCTGGTACATTATTGGTATCAATAGTCCATAAGTATACTGGTAAGGAAAATAATTGGCTTCCTGATAGAAACCTTAATAGGGGTAGATTGGACTACTATTATTATCTTATTAGTGGCATTCAAGTAATAAATCTCATTTATTATATAGTATGTGCTTGGTTTTACACTTACAAGCCAGTTGGAGAAATTTGTGAAAGGAGCAAGGAAGAAGATTTGGAACTAGCAAGTGCAAACATATCAATTGAGAATTTAAAAGATGGTAAGGAGGAAGAGAAGAAAGGGTTTACTAAAGATGAATGA

Protein sequence

>Msa1033230

MEIEKGIKNNMEMVEKEVETDSKKMNHPRRGGIRTLPFILANEVCDRFAGAGFHSNLISYLTQELNMPLVAASNTLTNFGGTSSFTPLIGALFADSFAGRFWTITVGCLIYELGLISITVSTILPHFRPPPCPTQVNCKEATSSQLLPLYMSLLLTSLGSGGIRPCVVPFSADQFDMSKDGVASRKWNLFNWYFFIMGFASLSALTIVVYVQDNVGWGWGLGIPTIAMMISVISFVLGSPLYKTVKPEGSPLTRLAQVVVAAVKKRKETLPDDPKFLYHNRELDAAISLEGSLLHSNQYKWLDKAAIVTEEEAKDSNAPPNLWNLVTVHRVEELKAIIRMLPIWASGILLIMSSSHLGSFVIQQARSMDRHLTHSFQIAPANMSIFGVLTMMIGVMLYERFFVPFARRFTKNPAGITCLQRMGVGFVVNIIATIVSALVEMKRKTVAAKFNLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLFDQSPESMRSSATALYCITTAIGNYSGTLLVSIVHKYTGKENNWLPDRNLNRGRLDYYYYLISGIQVINLIYYIVCAWFYTYKPVGEICERSKEEDLELASANISIENLKDGKEEEKKGFTKDE*