AlfalfaGEDB | Msa0651320

M. sativa cultivar zhongmu-4 / Msa0651320

KEGG: -
GO: GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0007275 GO:0008047 GO:0008104 GO:0008150 GO:0008289 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048046 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098772 GO:1901419 GO:1901421 GO:1905957 GO:1905959
PFAM: PF00168.33

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0651320	XP_003607906.1	97.093	172	5	0	1	172	1	172	5.17e-119	343

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0651320	sp\|Q9SSL1\|CAR7_ARATH	55.488	164	73	0	1	164	1	164	2.54e-62	192

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0651320	G7JJZ3	97.093	172	5	0	1	172	1	172	2.47e-119	343

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008850	Msa0651320	0.813943	1.981996e-51	-8.615850e-47
Msa0038310	Msa0651320	0.828235	1.006394e-54	-8.615850e-47
Msa0086090	Msa0651320	0.801474	8.852000e-49	-8.615850e-47
Msa0610770	Msa0651320	0.984980	3.638686e-162	-8.615850e-47
Msa0622340	Msa0651320	0.812162	4.870187e-51	-8.615850e-47
Msa0650620	Msa0651320	0.817887	2.611781e-52	-8.615850e-47
Msa0650650	Msa0651320	0.852347	4.901648e-61	-8.615850e-47
Msa0650740	Msa0651320	0.849779	2.597045e-60	-8.615850e-47
Msa0651320	Msa0693490	0.932778	5.105797e-95	-8.615850e-47
Msa0651320	Msa0754350	0.801772	7.690650e-49	-8.615850e-47
Msa0651320	Msa0755080	0.832045	1.182865e-55	-8.615850e-47
Msa0651320	Msa0755090	0.835714	1.428458e-56	-8.615850e-47
Msa0651320	Msa0787720	0.803596	3.232367e-49	-8.615850e-47
Msa0651320	Msa0789270	0.804324	2.281405e-49	-8.615850e-47
Msa0651320	Msa0789300	0.802282	6.041068e-49	-8.615850e-47
Msa0651320	Msa0796950	0.819807	9.564389e-53	-8.615850e-47
Msa0651320	Msa0797000	0.815477	9.063617e-52	-8.615850e-47
Msa0651320	Msa0834450	0.831045	2.084719e-55	-8.615850e-47
Msa0651320	Msa0834460	0.838352	3.027242e-57	-8.615850e-47
Msa0651320	Msa0908170	0.809345	1.980714e-50	-8.615850e-47
Msa0651320	Msa0946080	0.808588	2.877159e-50	-8.615850e-47
Msa0651320	Msa0982590	0.815527	8.833498e-52	-8.615850e-47
Msa0651320	Msa1015060	0.811097	8.302836e-51	-8.615850e-47
Msa0651320	Msa1056640	0.801022	1.095277e-48	-8.615850e-47
Msa0651320	Msa1092820	0.813919	2.005735e-51	-8.615850e-47
Msa0651320	Msa1120620	0.825210	5.308732e-54	-8.615850e-47
Msa0651320	Msa1157020	0.827575	1.450752e-54	-8.615850e-47
Msa0651320	Msa1157920	0.836193	1.080333e-56	-8.615850e-47
Msa0651320	Msa1211390	0.810426	1.159435e-50	-8.615850e-47
Msa0651320	Msa1218650	0.818278	2.130658e-52	-8.615850e-47
Msa0651320	Msa1284390	0.802526	5.380238e-49	-8.615850e-47
Msa0651320	Msa1308330	-0.807464	4.991570e-50	-8.615850e-47
Msa0651320	Msa1383480	0.842748	2.139319e-58	-8.615850e-47
Msa0651320	Msa1404720	0.803398	3.552893e-49	-8.615850e-47
Msa0651320	Msa1419110	0.805593	1.238367e-49	-8.615850e-47
Msa0651320	Msa1439230	0.810884	9.229865e-51	-8.615850e-47
Msa0132620	Msa0651320	0.803576	3.263750e-49	-8.615850e-47
Msa0196020	Msa0651320	-0.811425	7.047650e-51	-8.615850e-47
Msa0223100	Msa0651320	0.850930	1.234339e-60	-8.615850e-47
Msa0223290	Msa0651320	0.853515	2.270610e-61	-8.615850e-47
Msa0223380	Msa0651320	0.855197	7.416564e-62	-8.615850e-47
Msa0368780	Msa0651320	0.813454	2.539329e-51	-8.615850e-47
Msa0414070	Msa0651320	0.803384	3.576852e-49	-8.615850e-47
Msa0416320	Msa0651320	0.843422	1.415103e-58	-8.615850e-47
Msa0442170	Msa0651320	0.806643	7.444477e-50	-8.615850e-47
Msa0471790	Msa0651320	0.830324	3.131687e-55	-8.615850e-47
Msa0288240	Msa0651320	0.829643	4.588399e-55	-8.615850e-47
Msa0288320	Msa0651320	0.803447	3.470593e-49	-8.615850e-47
Msa0288330	Msa0651320	0.816371	5.725432e-52	-8.615850e-47
Msa0302650	Msa0651320	0.841085	5.882802e-58	-8.615850e-47
Msa0304700	Msa0651320	0.815234	1.026108e-51	-8.615850e-47
Msa0326670	Msa0651320	0.831283	1.822197e-55	-8.615850e-47
Msa0336270	Msa0651320	0.816243	6.113072e-52	-8.615850e-47
Msa0339870	Msa0651320	0.829127	6.126032e-55	-8.615850e-47
Msa0349680	Msa0651320	0.824123	9.571558e-54	-8.615850e-47
Msa0362060	Msa0651320	0.817814	2.712878e-52	-8.615850e-47
Msa0491500	Msa0651320	0.823645	1.239175e-53	-8.615850e-47
Msa0491520	Msa0651320	0.822100	2.837668e-53	-8.615850e-47
Msa0505660	Msa0651320	0.801440	8.995665e-49	-8.615850e-47
Msa0530380	Msa0651320	0.848109	7.557182e-60	-8.615850e-47
Msa0577870	Msa0651320	0.803353	3.631100e-49	-8.615850e-47
Msa0579340	Msa0651320	0.861552	9.469913e-64	-8.615850e-47
Msa0581920	Msa0651320	0.948575	7.182919e-107	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0651320	MtrunA17_Chr4g0043861	97.093	172	5	0	1	172	1	172	4.75e-123	343
Msa0651320	MtrunA17_Chr1g0160811	66.871	163	53	1	3	164	4	166	1.25e-76	226
Msa0651320	MtrunA17_Chr3g0111361	54.601	163	74	0	1	163	1	163	3.52e-64	194
Msa0651320	MtrunA17_Chr8g0393081	51.220	164	80	0	1	164	17	180	5.77e-58	179
Msa0651320	MtrunA17_Chr2g0280981	51.235	162	79	0	3	164	2	163	1.38e-57	177
Msa0651320	MtrunA17_Chr6g0478401	49.390	164	83	0	1	164	13	176	7.57e-56	174
Msa0651320	MtrunA17_Chr8g0380381	40.000	160	95	1	1	159	85	244	1.73e-36	126
Msa0651320	MtrunA17_Chr8g0352751	37.654	162	100	1	1	161	1	162	2.28e-33	116
Msa0651320	MtrunA17_Chr2g0292461	38.889	162	94	3	1	159	168	327	4.15e-32	117
Msa0651320	MtrunA17_Chr3g0083541	37.952	166	94	2	1	161	239	400	1.72e-30	114
Msa0651320	MtrunA17_Chr2g0290631	38.158	152	92	1	1	150	1	152	1.66e-29	106

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0651320	AT1G70810.1	55.488	164	73	0	1	164	1	164	2.59e-63	192
Msa0651320	AT1G48590.4	55.090	167	72	1	1	167	6	169	1.21e-61	188
Msa0651320	AT1G48590.1	55.090	167	72	1	1	167	6	169	1.21e-61	188
Msa0651320	AT1G48590.2	55.090	167	72	1	1	167	37	200	1.46e-61	189
Msa0651320	AT1G70790.3	53.659	164	74	1	5	166	6	169	6.87e-60	184
Msa0651320	AT1G70790.2	53.659	164	74	1	5	166	6	169	6.87e-60	184
Msa0651320	AT1G70790.1	53.659	164	74	1	5	166	6	169	6.87e-60	184
Msa0651320	AT3G17980.1	51.829	164	79	0	1	164	13	176	1.34e-58	181
Msa0651320	AT1G23140.1	51.852	162	78	0	1	162	1	162	3.32e-58	179
Msa0651320	AT1G73580.1	48.780	164	84	0	1	164	4	167	5.90e-58	179
Msa0651320	AT2G01540.1	53.659	164	69	2	5	166	6	164	1.15e-57	179
Msa0651320	AT1G70800.1	50.955	157	77	0	1	157	10	166	2.99e-55	172
Msa0651320	AT1G66360.1	45.402	174	93	1	1	172	1	174	2.90e-53	167
Msa0651320	AT5G37740.1	46.707	167	86	1	1	164	1	167	1.29e-51	163
Msa0651320	AT5G37740.2	44.068	177	86	2	1	164	1	177	3.50e-48	154
Msa0651320	AT1G70790.4	55.385	130	56	1	39	166	3	132	3.64e-46	148
Msa0651320	AT1G48590.3	45.509	167	56	2	1	167	37	168	3.21e-43	141
Msa0651320	AT4G05330.2	41.875	160	88	3	1	157	140	297	2.85e-34	122
Msa0651320	AT4G21160.2	41.875	160	88	3	1	157	176	333	1.04e-33	122
Msa0651320	AT4G21160.3	41.875	160	88	3	1	157	176	333	1.04e-33	122
Msa0651320	AT4G21160.1	41.875	160	88	3	1	157	176	333	1.04e-33	122
Msa0651320	AT4G21160.4	41.875	160	88	3	1	157	176	333	1.04e-33	122
Msa0651320	AT4G05330.3	41.875	160	88	3	1	157	175	332	1.04e-33	122
Msa0651320	AT4G05330.1	41.875	160	88	3	1	157	175	332	1.04e-33	122
Msa0651320	AT3G07940.1	39.506	162	97	1	1	161	224	385	2.88e-32	119
Msa0651320	AT5G47710.1	37.500	160	98	2	1	158	1	160	1.93e-31	111
Msa0651320	AT5G47710.2	37.500	160	98	2	1	158	1	160	1.93e-31	111
Msa0651320	AT5G47710.3	37.500	160	98	2	1	158	1	160	1.93e-31	111
Msa0651320	AT5G47710.4	37.500	160	98	2	1	158	1	160	1.93e-31	111

Find 44 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCAATCTTAAACTCATTTCT+TGG	0.237962	4_3:+58685000	None:intergenic
TTTCACTGTGGACGACAAAA+TGG	0.248123	4_3:-58685177	Msa0651320:CDS
TCATTATCAAATTAAGATTA+AGG	0.276142	4_3:+58684792	None:intergenic
GTCAGTTCTTCATTCCATTC+AGG	0.282274	4_3:+58686006	None:intergenic
ATCTTCACACATTGGAGATA+TGG	0.313339	4_3:+58685131	None:intergenic
GTTTCGATGGCAAACATTCT+AGG	0.356912	4_3:-58686381	Msa0651320:exon
GCTAGGCAATTAGTCGTATC+TGG	0.362744	4_3:+58685062	None:intergenic
TGATGTCAAATTCACTGATA+TGG	0.369022	4_3:-58684772	Msa0651320:three_prime_UTR
GTCTTGACTACATGTCCATC+TGG	0.383427	4_3:+58685092	None:intergenic
CTCGGATAAGCCTTTGCCTT+CGG	0.389439	4_3:+58684920	None:intergenic
ATGCAAACACAAGGTTGTTA+AGG	0.454129	4_3:-58686407	Msa0651320:five_prime_UTR
CAATCTTACATAGTAACTTC+AGG	0.461633	4_3:+58684818	None:intergenic
TCCATGGTGACAAGAACATA+AGG	0.466228	4_3:+58686294	None:intergenic
GTTGTTAAGGTTGGTTTCGA+TGG	0.484495	4_3:-58686394	Msa0651320:exon
CCATACGCAGCTACTCTCTT+CGG	0.489124	4_3:+58685040	None:intergenic
CTAACTAACTTGTTCTTCCA+TGG	0.492512	4_3:+58686278	None:intergenic
AGTAGCTGCGTATGGAGAGA+TGG	0.493455	4_3:-58685032	Msa0651320:CDS
AAGATAACTGCCATCCTGAA+TGG	0.495110	4_3:-58686020	Msa0651320:CDS
TGTTAACACACCAATACATC+TGG	0.500731	4_3:-58685968	Msa0651320:intron
TTCACTGTGGACGACAAAAT+GGG	0.505157	4_3:-58685176	Msa0651320:CDS
ATATCTCCAATGTGTGAAGA+TGG	0.506001	4_3:-58685129	Msa0651320:CDS
AAACACAAGGTTGTTAAGGT+TGG	0.510802	4_3:-58686403	Msa0651320:five_prime_UTR
TGAGTACTGACCAGATGTAT+TGG	0.524936	4_3:+58685958	None:intergenic
TATCTCCAATGTGTGAAGAT+GGG	0.525049	4_3:-58685128	Msa0651320:CDS
CCGAAGAGAGTAGCTGCGTA+TGG	0.539890	4_3:-58685040	Msa0651320:CDS
GACAAGAACATAAGGGTCGC+TGG	0.578982	4_3:+58686302	None:intergenic
AGATTGAGAAATGTTGACTC+TGG	0.584076	4_3:-58684984	Msa0651320:CDS
CCCTTATGTTCTTGTCACCA+TGG	0.587591	4_3:-58686295	Msa0651320:CDS
CCATGGTGACAAGAACATAA+GGG	0.590675	4_3:+58686295	None:intergenic
CGCAGCTACTCTCTTCGGCT+AGG	0.597984	4_3:+58685045	None:intergenic
CTAATGCATAAAGTTAGAGA+AGG	0.604755	4_3:+58684876	None:intergenic
GTTACAGAATCCGAAGGCAA+AGG	0.605128	4_3:-58684930	Msa0651320:CDS
AAGTACTAGTCGAAATTGAG+TGG	0.607422	4_3:-58684959	Msa0651320:CDS
TCTTGACTACATGTCCATCT+GGG	0.611492	4_3:+58685093	None:intergenic
GGGTTGAGCGATCTCCCAGA+TGG	0.612527	4_3:-58685107	Msa0651320:CDS
GTTCTTCATTCCATTCAGGA+TGG	0.627122	4_3:+58686010	None:intergenic
ATCTCCAATGTGTGAAGATG+GGG	0.633945	4_3:-58685127	Msa0651320:CDS
TCAACCCCATCTTCACACAT+TGG	0.658196	4_3:+58685123	None:intergenic
CGACAAAGACACTTTCACTG+TGG	0.661032	4_3:-58685189	Msa0651320:CDS
GTACTCCTAAAACTCAACCT+CGG	0.669415	4_3:+58684902	None:intergenic
ATTGATGTTACAGAATCCGA+AGG	0.687927	4_3:-58684936	Msa0651320:CDS
CGAAGGCAAAGGCTTATCCG+AGG	0.695987	4_3:-58684919	Msa0651320:CDS
AAGTTGTGCATGCAAACACA+AGG	0.715116	4_3:-58686416	Msa0651320:five_prime_UTR
TCGCTGGTACGAGAATCATG+AGG	0.744769	4_3:+58686318	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAATAAATAAAAGGAAAAA+TGG	-	chr4_3:58685312-58685331	Msa0651320:intron	10.0%
!!	AAATAAATAAAAGGAAAAAT+GGG	-	chr4_3:58685313-58685332	Msa0651320:intron	10.0%
!!!	GAAATTTTGTTTATTATTAA+AGG	-	chr4_3:58686456-58686475	Msa0651320:five_prime_UTR	10.0%
!!	AAAATAAATAAAAGGAAAAA+TGG	-	chr4_3:58685312-58685331	Msa0651320:intron	10.0%
!!	AAATAAATAAAAGGAAAAAT+GGG	-	chr4_3:58685313-58685332	Msa0651320:intron	10.0%
!!	TTATGATATGTTACTATAAA+TGG	-	chr4_3:58685132-58685151	Msa0651320:CDS	15.0%
!!	CAAAAGAGAAAATAAATAAA+AGG	-	chr4_3:58685304-58685323	Msa0651320:intron	15.0%
!!!	TTATCTTAGAAATTTTATCT+CGG	+	chr4_3:58685530-58685549	None:intergenic	15.0%
!!!	ATCTTAGAAATTTTATCTTA+GGG	+	chr4_3:58685559-58685578	None:intergenic	15.0%
!!!	AATCTTAGAAATTTTATCTT+AGG	+	chr4_3:58685560-58685579	None:intergenic	15.0%
!!	TTTGAATTTAAATTAACCAT+AGG	-	chr4_3:58685687-58685706	Msa0651320:intron	15.0%
!!	TCATTATCAAATTAAGATTA+AGG	+	chr4_3:58686413-58686432	None:intergenic	15.0%
!!	TTATGATATGTTACTATAAA+TGG	-	chr4_3:58685132-58685151	Msa0651320:CDS	15.0%
!!	CAAAAGAGAAAATAAATAAA+AGG	-	chr4_3:58685304-58685323	Msa0651320:intron	15.0%
!!!	TTATCTTAGAAATTTTATCT+CGG	+	chr4_3:58685530-58685549	None:intergenic	15.0%
!!!	ATCTTAGAAATTTTATCTTA+GGG	+	chr4_3:58685559-58685578	None:intergenic	15.0%
!!!	AATCTTAGAAATTTTATCTT+AGG	+	chr4_3:58685560-58685579	None:intergenic	15.0%
!!	TTTGAATTTAAATTAACCAT+AGG	-	chr4_3:58685687-58685706	Msa0651320:intron	15.0%
!!	TCATTATCAAATTAAGATTA+AGG	+	chr4_3:58686413-58686432	None:intergenic	15.0%
!!!	ATCAACATAAAATACTGATT+TGG	+	chr4_3:58684995-58685014	None:intergenic	20.0%
!!!	ACTAAGATCTTTCTTTTTAT+TGG	-	chr4_3:58685075-58685094	Msa0651320:CDS	20.0%
!!	ATAGTAGTCTAATAAATTAG+AGG	+	chr4_3:58685392-58685411	None:intergenic	20.0%
!!!	TCAATTTGAAACGAAAAAAA+CGG	+	chr4_3:58685934-58685953	None:intergenic	20.0%
!!!	ATCAACATAAAATACTGATT+TGG	+	chr4_3:58684995-58685014	None:intergenic	20.0%
!!!	ACTAAGATCTTTCTTTTTAT+TGG	-	chr4_3:58685075-58685094	Msa0651320:CDS	20.0%
!!	ATAGTAGTCTAATAAATTAG+AGG	+	chr4_3:58685392-58685411	None:intergenic	20.0%
!!!	TCAATTTGAAACGAAAAAAA+CGG	+	chr4_3:58685934-58685953	None:intergenic	20.0%
!	TCTAAGAACTGATTGAAATT+TGG	-	chr4_3:58685016-58685035	Msa0651320:CDS	25.0%
!	TTCTGCAACTTAAAAAAAGT+TGG	+	chr4_3:58685274-58685293	None:intergenic	25.0%
!!!	AATTTTTTATGCGTTTCCTT+TGG	-	chr4_3:58685433-58685452	Msa0651320:intron	25.0%
!	TAAATTAACCATAGGATCAA+AGG	-	chr4_3:58685695-58685714	Msa0651320:intron	25.0%
!	AAATTAACCATAGGATCAAA+GGG	-	chr4_3:58685696-58685715	Msa0651320:intron	25.0%
!	ATGAGAATCACAAACAAATA+CGG	-	chr4_3:58685839-58685858	Msa0651320:intron	25.0%
!	ACCACCAACAATTTAATATT+AGG	+	chr4_3:58685961-58685980	None:intergenic	25.0%
!	TCAATCTTAAACTCATTTCT+TGG	+	chr4_3:58686205-58686224	None:intergenic	25.0%
!	TCTAAGAACTGATTGAAATT+TGG	-	chr4_3:58685016-58685035	Msa0651320:CDS	25.0%
!	TTCTGCAACTTAAAAAAAGT+TGG	+	chr4_3:58685274-58685293	None:intergenic	25.0%
!!!	AATTTTTTATGCGTTTCCTT+TGG	-	chr4_3:58685433-58685452	Msa0651320:intron	25.0%
!	TAAATTAACCATAGGATCAA+AGG	-	chr4_3:58685695-58685714	Msa0651320:intron	25.0%
!	AAATTAACCATAGGATCAAA+GGG	-	chr4_3:58685696-58685715	Msa0651320:intron	25.0%
!	ATGAGAATCACAAACAAATA+CGG	-	chr4_3:58685839-58685858	Msa0651320:intron	25.0%
!	ACCACCAACAATTTAATATT+AGG	+	chr4_3:58685961-58685980	None:intergenic	25.0%
!	TCAATCTTAAACTCATTTCT+TGG	+	chr4_3:58686205-58686224	None:intergenic	25.0%
	ATCAGACTTCGTATCAAAAA+AGG	-	chr4_3:58684848-58684867	Msa0651320:three_prime_UTR	30.0%
	ATCACACAAGTATAAACCAA+AGG	+	chr4_3:58685452-58685471	None:intergenic	30.0%
	TGGTTTATACTTGTGTGATT+TGG	-	chr4_3:58685453-58685472	Msa0651320:intron	30.0%
	CTCAGTTGAAGATAAGTTTA+AGG	+	chr4_3:58685591-58685610	None:intergenic	30.0%
	AAGTAATGTAGCCTAACAAA+TGG	-	chr4_3:58685787-58685806	Msa0651320:intron	30.0%
	TGTGATTTAAGCCATTTGTT+AGG	+	chr4_3:58685801-58685820	None:intergenic	30.0%
	CGAGCCTAATATTAAATTGT+TGG	-	chr4_3:58685954-58685973	Msa0651320:intron	30.0%
	GCCTAATATTAAATTGTTGG+TGG	-	chr4_3:58685957-58685976	Msa0651320:intron	30.0%
	CTAATGCATAAAGTTAGAGA+AGG	+	chr4_3:58686329-58686348	None:intergenic	30.0%
	CAATCTTACATAGTAACTTC+AGG	+	chr4_3:58686387-58686406	None:intergenic	30.0%
	TGATGTCAAATTCACTGATA+TGG	-	chr4_3:58686430-58686449	Msa0651320:five_prime_UTR	30.0%
	ATCAGACTTCGTATCAAAAA+AGG	-	chr4_3:58684848-58684867	Msa0651320:three_prime_UTR	30.0%
	ATCACACAAGTATAAACCAA+AGG	+	chr4_3:58685452-58685471	None:intergenic	30.0%
	TGGTTTATACTTGTGTGATT+TGG	-	chr4_3:58685453-58685472	Msa0651320:intron	30.0%
	CTCAGTTGAAGATAAGTTTA+AGG	+	chr4_3:58685591-58685610	None:intergenic	30.0%
	AAGTAATGTAGCCTAACAAA+TGG	-	chr4_3:58685787-58685806	Msa0651320:intron	30.0%
	TGTGATTTAAGCCATTTGTT+AGG	+	chr4_3:58685801-58685820	None:intergenic	30.0%
	CGAGCCTAATATTAAATTGT+TGG	-	chr4_3:58685954-58685973	Msa0651320:intron	30.0%
	GCCTAATATTAAATTGTTGG+TGG	-	chr4_3:58685957-58685976	Msa0651320:intron	30.0%
	CTAATGCATAAAGTTAGAGA+AGG	+	chr4_3:58686329-58686348	None:intergenic	30.0%
	CAATCTTACATAGTAACTTC+AGG	+	chr4_3:58686387-58686406	None:intergenic	30.0%
	TGATGTCAAATTCACTGATA+TGG	-	chr4_3:58686430-58686449	Msa0651320:five_prime_UTR	30.0%
	ATGCAAACACAAGGTTGTTA+AGG	-	chr4_3:58684795-58684814	Msa0651320:three_prime_UTR	35.0%
	AAACACAAGGTTGTTAAGGT+TGG	-	chr4_3:58684799-58684818	Msa0651320:three_prime_UTR	35.0%
!!	CTAACTAACTTGTTCTTCCA+TGG	+	chr4_3:58684927-58684946	None:intergenic	35.0%
	TGTTAACACACCAATACATC+TGG	-	chr4_3:58685234-58685253	Msa0651320:intron	35.0%
!!	CAAGTTTTTGGACAACGATA+TGG	+	chr4_3:58685636-58685655	None:intergenic	35.0%
	CATATCGTTGTCCAAAAACT+TGG	-	chr4_3:58685634-58685653	Msa0651320:intron	35.0%
	AACTGAGTTCATCACAAACT+TGG	-	chr4_3:58685719-58685738	Msa0651320:intron	35.0%
	ATCTTCACACATTGGAGATA+TGG	+	chr4_3:58686074-58686093	None:intergenic	35.0%
	ATATCTCCAATGTGTGAAGA+TGG	-	chr4_3:58686073-58686092	Msa0651320:intron	35.0%
	TATCTCCAATGTGTGAAGAT+GGG	-	chr4_3:58686074-58686093	Msa0651320:intron	35.0%
!!	AGATTGAGAAATGTTGACTC+TGG	-	chr4_3:58686218-58686237	Msa0651320:intron	35.0%
	AAGTACTAGTCGAAATTGAG+TGG	-	chr4_3:58686243-58686262	Msa0651320:intron	35.0%
	ATTGATGTTACAGAATCCGA+AGG	-	chr4_3:58686266-58686285	Msa0651320:intron	35.0%
	ATGCAAACACAAGGTTGTTA+AGG	-	chr4_3:58684795-58684814	Msa0651320:three_prime_UTR	35.0%
	AAACACAAGGTTGTTAAGGT+TGG	-	chr4_3:58684799-58684818	Msa0651320:three_prime_UTR	35.0%
!!	CTAACTAACTTGTTCTTCCA+TGG	+	chr4_3:58684927-58684946	None:intergenic	35.0%
	TGTTAACACACCAATACATC+TGG	-	chr4_3:58685234-58685253	Msa0651320:intron	35.0%
!!	CAAGTTTTTGGACAACGATA+TGG	+	chr4_3:58685636-58685655	None:intergenic	35.0%
	CATATCGTTGTCCAAAAACT+TGG	-	chr4_3:58685634-58685653	Msa0651320:intron	35.0%
	AACTGAGTTCATCACAAACT+TGG	-	chr4_3:58685719-58685738	Msa0651320:intron	35.0%
	ATCTTCACACATTGGAGATA+TGG	+	chr4_3:58686074-58686093	None:intergenic	35.0%
	ATATCTCCAATGTGTGAAGA+TGG	-	chr4_3:58686073-58686092	Msa0651320:intron	35.0%
	TATCTCCAATGTGTGAAGAT+GGG	-	chr4_3:58686074-58686093	Msa0651320:intron	35.0%
!!	AGATTGAGAAATGTTGACTC+TGG	-	chr4_3:58686218-58686237	Msa0651320:intron	35.0%
	AAGTACTAGTCGAAATTGAG+TGG	-	chr4_3:58686243-58686262	Msa0651320:intron	35.0%
	ATTGATGTTACAGAATCCGA+AGG	-	chr4_3:58686266-58686285	Msa0651320:intron	35.0%
	AAGTTGTGCATGCAAACACA+AGG	-	chr4_3:58684786-58684805	Msa0651320:three_prime_UTR	40.0%
!!	GTTGTTAAGGTTGGTTTCGA+TGG	-	chr4_3:58684808-58684827	Msa0651320:three_prime_UTR	40.0%
	GTTTCGATGGCAAACATTCT+AGG	-	chr4_3:58684821-58684840	Msa0651320:three_prime_UTR	40.0%
	CCATGGTGACAAGAACATAA+GGG	+	chr4_3:58684910-58684929	None:intergenic	40.0%
	TCCATGGTGACAAGAACATA+AGG	+	chr4_3:58684911-58684930	None:intergenic	40.0%
	AAGATAACTGCCATCCTGAA+TGG	-	chr4_3:58685182-58685201	Msa0651320:CDS	40.0%
	GTTCTTCATTCCATTCAGGA+TGG	+	chr4_3:58685195-58685214	None:intergenic	40.0%
	GTCAGTTCTTCATTCCATTC+AGG	+	chr4_3:58685199-58685218	None:intergenic	40.0%
!!	TGAGTACTGACCAGATGTAT+TGG	+	chr4_3:58685247-58685266	None:intergenic	40.0%
	GTTCATCACAAACTTGGTTG+CGG	-	chr4_3:58685725-58685744	Msa0651320:intron	40.0%
	ATACGGCTGATGCATTGTAT+TGG	-	chr4_3:58685856-58685875	Msa0651320:intron	40.0%
	TGATGTTGTAGCCTAGATGA+AGG	-	chr4_3:58685897-58685916	Msa0651320:intron	40.0%
	GATGTTGTAGCCTAGATGAA+GGG	-	chr4_3:58685898-58685917	Msa0651320:intron	40.0%
	TTTCACTGTGGACGACAAAA+TGG	-	chr4_3:58686025-58686044	Msa0651320:CDS	40.0%
	TTCACTGTGGACGACAAAAT+GGG	-	chr4_3:58686026-58686045	Msa0651320:CDS	40.0%
	ATCTCCAATGTGTGAAGATG+GGG	-	chr4_3:58686075-58686094	Msa0651320:intron	40.0%
	TCTTGACTACATGTCCATCT+GGG	+	chr4_3:58686112-58686131	None:intergenic	40.0%
!	CTTATCCGAGGTTGAGTTTT+AGG	-	chr4_3:58686295-58686314	Msa0651320:CDS	40.0%
	GTACTCCTAAAACTCAACCT+CGG	+	chr4_3:58686303-58686322	None:intergenic	40.0%
	AAGTTGTGCATGCAAACACA+AGG	-	chr4_3:58684786-58684805	Msa0651320:three_prime_UTR	40.0%
!!	GTTGTTAAGGTTGGTTTCGA+TGG	-	chr4_3:58684808-58684827	Msa0651320:three_prime_UTR	40.0%
	GTTTCGATGGCAAACATTCT+AGG	-	chr4_3:58684821-58684840	Msa0651320:three_prime_UTR	40.0%
	CCATGGTGACAAGAACATAA+GGG	+	chr4_3:58684910-58684929	None:intergenic	40.0%
	TCCATGGTGACAAGAACATA+AGG	+	chr4_3:58684911-58684930	None:intergenic	40.0%
	AAGATAACTGCCATCCTGAA+TGG	-	chr4_3:58685182-58685201	Msa0651320:CDS	40.0%
	GTTCTTCATTCCATTCAGGA+TGG	+	chr4_3:58685195-58685214	None:intergenic	40.0%
	GTCAGTTCTTCATTCCATTC+AGG	+	chr4_3:58685199-58685218	None:intergenic	40.0%
!!	TGAGTACTGACCAGATGTAT+TGG	+	chr4_3:58685247-58685266	None:intergenic	40.0%
	GTTCATCACAAACTTGGTTG+CGG	-	chr4_3:58685725-58685744	Msa0651320:intron	40.0%
	ATACGGCTGATGCATTGTAT+TGG	-	chr4_3:58685856-58685875	Msa0651320:intron	40.0%
	TGATGTTGTAGCCTAGATGA+AGG	-	chr4_3:58685897-58685916	Msa0651320:intron	40.0%
	GATGTTGTAGCCTAGATGAA+GGG	-	chr4_3:58685898-58685917	Msa0651320:intron	40.0%
	TTTCACTGTGGACGACAAAA+TGG	-	chr4_3:58686025-58686044	Msa0651320:CDS	40.0%
	TTCACTGTGGACGACAAAAT+GGG	-	chr4_3:58686026-58686045	Msa0651320:CDS	40.0%
	ATCTCCAATGTGTGAAGATG+GGG	-	chr4_3:58686075-58686094	Msa0651320:intron	40.0%
	TCTTGACTACATGTCCATCT+GGG	+	chr4_3:58686112-58686131	None:intergenic	40.0%
!	CTTATCCGAGGTTGAGTTTT+AGG	-	chr4_3:58686295-58686314	Msa0651320:CDS	40.0%
	GTACTCCTAAAACTCAACCT+CGG	+	chr4_3:58686303-58686322	None:intergenic	40.0%
	CCCTTATGTTCTTGTCACCA+TGG	-	chr4_3:58684907-58684926	Msa0651320:exon	45.0%
!	GTAGACTCTCGCCAAGTTTT+TGG	+	chr4_3:58685648-58685667	None:intergenic	45.0%
	CTCAGTTCCCTTTGATCCTA+TGG	+	chr4_3:58685706-58685725	None:intergenic	45.0%
	CGACAAAGACACTTTCACTG+TGG	-	chr4_3:58686013-58686032	Msa0651320:CDS	45.0%
	TCAACCCCATCTTCACACAT+TGG	+	chr4_3:58686082-58686101	None:intergenic	45.0%
	GTCTTGACTACATGTCCATC+TGG	+	chr4_3:58686113-58686132	None:intergenic	45.0%
	GCTAGGCAATTAGTCGTATC+TGG	+	chr4_3:58686143-58686162	None:intergenic	45.0%
	GTTACAGAATCCGAAGGCAA+AGG	-	chr4_3:58686272-58686291	Msa0651320:intron	45.0%
	CCCTTATGTTCTTGTCACCA+TGG	-	chr4_3:58684907-58684926	Msa0651320:exon	45.0%
!	GTAGACTCTCGCCAAGTTTT+TGG	+	chr4_3:58685648-58685667	None:intergenic	45.0%
	CTCAGTTCCCTTTGATCCTA+TGG	+	chr4_3:58685706-58685725	None:intergenic	45.0%
	CGACAAAGACACTTTCACTG+TGG	-	chr4_3:58686013-58686032	Msa0651320:CDS	45.0%
	TCAACCCCATCTTCACACAT+TGG	+	chr4_3:58686082-58686101	None:intergenic	45.0%
	GTCTTGACTACATGTCCATC+TGG	+	chr4_3:58686113-58686132	None:intergenic	45.0%
	GCTAGGCAATTAGTCGTATC+TGG	+	chr4_3:58686143-58686162	None:intergenic	45.0%
	GTTACAGAATCCGAAGGCAA+AGG	-	chr4_3:58686272-58686291	Msa0651320:intron	45.0%
	TCGCTGGTACGAGAATCATG+AGG	+	chr4_3:58684887-58684906	None:intergenic	50.0%
	GACAAGAACATAAGGGTCGC+TGG	+	chr4_3:58684903-58684922	None:intergenic	50.0%
	TCTGTGTGCACCCTTCATCT+AGG	+	chr4_3:58685911-58685930	None:intergenic	50.0%
	CCATACGCAGCTACTCTCTT+CGG	+	chr4_3:58686165-58686184	None:intergenic	50.0%
	AGTAGCTGCGTATGGAGAGA+TGG	-	chr4_3:58686170-58686189	Msa0651320:intron	50.0%
	CTCGGATAAGCCTTTGCCTT+CGG	+	chr4_3:58686285-58686304	None:intergenic	50.0%
	TCGCTGGTACGAGAATCATG+AGG	+	chr4_3:58684887-58684906	None:intergenic	50.0%
	GACAAGAACATAAGGGTCGC+TGG	+	chr4_3:58684903-58684922	None:intergenic	50.0%
	TCTGTGTGCACCCTTCATCT+AGG	+	chr4_3:58685911-58685930	None:intergenic	50.0%
	CCATACGCAGCTACTCTCTT+CGG	+	chr4_3:58686165-58686184	None:intergenic	50.0%
	AGTAGCTGCGTATGGAGAGA+TGG	-	chr4_3:58686170-58686189	Msa0651320:intron	50.0%
	CTCGGATAAGCCTTTGCCTT+CGG	+	chr4_3:58686285-58686304	None:intergenic	50.0%
	CCGAAGAGAGTAGCTGCGTA+TGG	-	chr4_3:58686162-58686181	Msa0651320:intron	55.0%
	CGAAGGCAAAGGCTTATCCG+AGG	-	chr4_3:58686283-58686302	Msa0651320:intron	55.0%
	CCGAAGAGAGTAGCTGCGTA+TGG	-	chr4_3:58686162-58686181	Msa0651320:intron	55.0%
	CGAAGGCAAAGGCTTATCCG+AGG	-	chr4_3:58686283-58686302	Msa0651320:intron	55.0%
	GGGTTGAGCGATCTCCCAGA+TGG	-	chr4_3:58686095-58686114	Msa0651320:intron	60.0%
	CGCAGCTACTCTCTTCGGCT+AGG	+	chr4_3:58686160-58686179	None:intergenic	60.0%
	GGGTTGAGCGATCTCCCAGA+TGG	-	chr4_3:58686095-58686114	Msa0651320:intron	60.0%
	CGCAGCTACTCTCTTCGGCT+AGG	+	chr4_3:58686160-58686179	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	58684747	58686477	58684747	ID=Msa0651320;Name=Msa0651320
chr4_3	mRNA	58684747	58686477	58684747	ID=Msa0651320-mRNA-1;Parent=Msa0651320;Name=Msa0651320-mRNA-1;_AED=0.05;_eAED=0.05;_QI=80\|1\|1\|1\|1\|1\|3\|161\|172
chr4_3	exon	58684747	58685219	58684747	ID=Msa0651320-mRNA-1:exon:15558;Parent=Msa0651320-mRNA-1
chr4_3	exon	58685969	58686064	58685969	ID=Msa0651320-mRNA-1:exon:15557;Parent=Msa0651320-mRNA-1
chr4_3	exon	58686287	58686477	58686287	ID=Msa0651320-mRNA-1:exon:15556;Parent=Msa0651320-mRNA-1
chr4_3	five_prime_UTR	58686398	58686477	58686398	ID=Msa0651320-mRNA-1:five_prime_utr;Parent=Msa0651320-mRNA-1
chr4_3	CDS	58686287	58686397	58686287	ID=Msa0651320-mRNA-1:cds;Parent=Msa0651320-mRNA-1
chr4_3	CDS	58685969	58686064	58685969	ID=Msa0651320-mRNA-1:cds;Parent=Msa0651320-mRNA-1
chr4_3	CDS	58684908	58685219	58684908	ID=Msa0651320-mRNA-1:cds;Parent=Msa0651320-mRNA-1
chr4_3	three_prime_UTR	58684747	58684907	58684747	ID=Msa0651320-mRNA-1:three_prime_utr;Parent=Msa0651320-mRNA-1

Gene Sequence

>Msa0651320

ATGGCAAACATTCTAGGTCTTATCAGACTTCGTATCAAAAAAGGCACTAATCTCATACCTCATGATTCTCGTACCAGCGACCCTTATGTTCTTGTCACCATGGAAGAACAAACACTGAAGACTGCTGTTGTGAAAGATAACTGCCATCCTGAATGGAATGAAGAACTGACACTTTACATTAAAGATGTTAACACACCAATACATCTGACAGTTTGCGACAAAGACACTTTCACTGTGGACGACAAAATGGGAGAAGCAGACATAGACATAAAACCATATCTCCAATGTGTGAAGATGGGGTTGAGCGATCTCCCAGATGGACATGTAGTCAAGACTGTTCAACCAGATACGACTAATTGCCTAGCCGAAGAGAGTAGCTGCGTATGGAGAGATGGAAAAGTCGTCCAAGAAATGAGTTTAAGATTGAGAAATGTTGACTCTGGTGAAGTACTAGTCGAAATTGAGTGGATTGATGTTACAGAATCCGAAGGCAAAGGCTTATCCGAGGTTGAGTTTTAG

Protein sequence

>Msa0651320

MANILGLIRLRIKKGTNLIPHDSRTSDPYVLVTMEEQTLKTAVVKDNCHPEWNEELTLYIKDVNTPIHLTVCDKDTFTVDDKMGEADIDIKPYLQCVKMGLSDLPDGHVVKTVQPDTTNCLAEESSCVWRDGKVVQEMSLRLRNVDSGEVLVEIEWIDVTESEGKGLSEVEF*