AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0443300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0443300 MtrunA17_Chr3g0087701 59.967 607 161 8 45 582 438 1031 0.0 627
Msa0443300 MtrunA17_Chr3g0087581 57.591 606 176 7 45 582 439 1031 0.0 605
Msa0443300 MtrunA17_Chr3g0086221 57.237 608 178 7 45 582 435 1030 0.0 601
Msa0443300 MtrunA17_Chr3g0086621 55.868 605 188 6 45 582 436 1028 0.0 601
Msa0443300 MtrunA17_Chr3g0086161 56.908 608 179 9 45 582 436 1030 0.0 593
Msa0443300 MtrunA17_Chr3g0086091 56.979 609 178 9 45 582 247 842 0.0 584
Msa0443300 MtrunA17_Chr3g0086071 55.075 601 191 6 45 578 56 644 0.0 583
Msa0443300 MtrunA17_Chr3g0084081 54.516 609 190 7 45 584 454 1044 0.0 568
Msa0443300 MtrunA17_Chr3g0085751 53.583 614 197 9 45 582 433 1034 7.62e-180 540
Msa0443300 MtrunA17_Chr3g0085451 53.971 617 185 9 45 584 427 1021 5.54e-178 534
Msa0443300 MtrunA17_Chr3g0085521 52.769 614 202 8 45 582 430 1031 7.06e-177 532
Msa0443300 MtrunA17_Chr3g0084051 52.500 600 208 8 45 582 454 1038 3.56e-176 530
Msa0443300 MtrunA17_Chr3g0084061 53.821 615 193 11 45 584 447 1045 1.54e-175 529
Msa0443300 MtrunA17_Chr3g0084031 52.537 611 207 12 39 582 452 1046 2.92e-174 525
Msa0443300 MtrunA17_Chr3g0085711 51.629 614 209 8 45 582 5 606 3.05e-172 506
Msa0443300 MtrunA17_Chr3g0085111 50.487 616 217 9 42 582 433 1035 1.01e-167 508
Msa0443300 MtrunA17_Chr3g0085161 50.413 605 210 10 55 582 309 900 3.16e-165 498
Msa0443300 MtrunA17_Chr3g0086151 59.436 461 143 6 45 474 436 883 4.42e-164 491
Msa0443300 MtrunA17_Chr3g0085091 50.820 610 210 10 50 582 446 1042 2.22e-161 492
Msa0443300 MtrunA17_Chr3g0082791 51.748 572 199 9 45 554 456 1012 4.58e-161 487
Msa0443300 MtrunA17_Chr3g0085131 50.082 609 198 11 55 582 445 1028 2.68e-158 483
Msa0443300 MtrunA17_Chr3g0085801 48.788 619 179 10 45 584 457 1016 4.09e-158 481
Msa0443300 MtrunA17_Chr3g0085171 49.678 622 212 12 45 582 423 1027 1.11e-156 479
Msa0443300 MtrunA17_Chr3g0087541 48.819 635 209 11 28 579 448 1049 2.89e-153 471
Msa0443300 MtrunA17_Chr3g0087731 49.826 576 202 8 45 582 248 774 4.06e-153 463
Msa0443300 MtrunA17_Chr7g0221481 64.103 390 131 4 45 430 440 824 4.96e-151 456
Msa0443300 MtrunA17_Chr3g0086181 57.235 463 151 8 45 475 436 883 2.73e-150 456
Msa0443300 MtrunA17_Chr3g0085651 52.057 559 203 13 45 567 447 976 2.32e-147 460
Msa0443300 MtrunA17_Chr3g0085651 45.882 255 84 2 382 582 1006 1260 2.57e-52 194
Msa0443300 MtrunA17_Chr3g0085651 38.596 171 83 8 405 570 961 1114 2.72e-14 76.6
Msa0443300 MtrunA17_Chr3g0091011 53.673 490 163 8 54 501 426 893 8.72e-145 444
Msa0443300 MtrunA17_Chr3g0085331 49.310 580 206 15 42 570 452 994 9.20e-136 427
Msa0443300 MtrunA17_Chr3g0085331 46.718 259 95 4 361 582 890 1142 5.44e-53 196
Msa0443300 MtrunA17_Chr3g0085561 48.805 586 203 19 45 570 424 972 1.20e-129 405
Msa0443300 MtrunA17_Chr3g0085561 49.505 101 43 3 383 478 882 979 1.39e-14 77.4
Msa0443300 MtrunA17_Chr3g0085551 52.018 446 168 6 45 457 330 762 6.19e-126 389
Msa0443300 MtrunA17_Chr3g0085501 46.864 574 220 17 45 570 455 991 1.52e-122 390
Msa0443300 MtrunA17_Chr3g0085501 48.837 215 70 2 405 582 928 1139 2.76e-47 179
Msa0443300 MtrunA17_Chr3g0085431 49.251 467 149 6 45 475 88 502 2.96e-119 363
Msa0443300 MtrunA17_Chr3g0086741 54.500 400 149 6 45 429 462 843 4.41e-118 372
Msa0443300 MtrunA17_Chr3g0085471 46.702 561 213 17 45 564 455 970 6.70e-117 377
Msa0443300 MtrunA17_Chr3g0085471 46.304 257 82 2 382 582 913 1169 3.39e-54 200
Msa0443300 MtrunA17_Chr3g0085701 49.497 398 120 5 261 582 451 843 3.61e-94 310
Msa0443300 MtrunA17_Chr8g0352861 37.341 549 270 13 42 544 457 977 5.63e-90 303
Msa0443300 MtrunA17_Chr3g0091061 36.145 581 295 12 45 575 453 1007 1.01e-88 299
Msa0443300 MtrunA17_Chr3g0090651 36.170 611 309 16 1 556 403 987 3.91e-86 289
Msa0443300 MtrunA17_Chr8g0352831 36.318 603 295 12 42 569 461 1049 4.50e-85 289
Msa0443300 MtrunA17_Chr3g0091081 35.823 589 290 14 45 575 453 1011 2.26e-82 281
Msa0443300 MtrunA17_Chr3g0090691 35.986 578 299 14 45 575 453 1006 1.51e-81 279
Msa0443300 MtrunA17_Chr1g0169901 36.427 571 294 9 45 569 446 993 6.44e-81 276
Msa0443300 MtrunA17_Chr3g0082131 36.364 550 288 11 56 563 462 991 1.57e-78 270
Msa0443300 MtrunA17_Chr3g0113781 33.945 545 281 9 56 567 244 742 1.93e-76 258
Msa0443300 MtrunA17_Chr1g0164581 36.213 544 285 11 62 563 444 967 2.93e-76 264
Msa0443300 MtrunA17_Chr2g0299121 33.782 595 328 13 54 606 463 1033 2.94e-76 262
Msa0443300 MtrunA17_Chr3g0090431 35.602 573 292 16 45 567 325 870 3.41e-76 262
Msa0443300 MtrunA17_Chr3g0089871 35.324 586 315 15 45 596 452 1007 1.26e-75 263
Msa0443300 MtrunA17_Chr3g0089251 35.424 590 302 14 33 567 462 1027 2.73e-75 262
Msa0443300 MtrunA17_Chr3g0113791 33.945 545 281 9 56 567 449 947 3.37e-75 260
Msa0443300 MtrunA17_Chr8g0348931 35.364 591 284 17 56 588 471 1021 9.15e-75 259
Msa0443300 MtrunA17_Chr3g0084971 38.750 480 238 9 51 491 450 912 1.15e-74 259
Msa0443300 MtrunA17_Chr2g0309721 34.237 590 274 14 45 567 453 995 1.49e-74 259
Msa0443300 MtrunA17_Chr2g0299091 33.950 595 327 14 54 606 437 1007 2.71e-74 256
Msa0443300 MtrunA17_Chr3g0089211 35.325 569 298 12 45 567 500 1044 4.65e-74 258
Msa0443300 MtrunA17_Chr3g0082311 33.061 611 333 17 54 612 462 1048 1.29e-73 256
Msa0443300 MtrunA17_Chr3g0082351 35.662 544 282 17 54 570 460 962 2.51e-73 255
Msa0443300 MtrunA17_Chr3g0089601 37.473 467 255 9 45 490 451 901 2.67e-73 253
Msa0443300 MtrunA17_Chr3g0089991 34.690 565 288 11 45 567 457 982 3.65e-73 255
Msa0443300 MtrunA17_Chr1g0164631 35.626 567 260 11 45 567 460 965 4.76e-73 253
Msa0443300 MtrunA17_Chr3g0091121 33.743 569 300 13 56 575 76 616 7.20e-73 247
Msa0443300 MtrunA17_Chr2g0299151 32.387 599 313 12 56 576 451 1035 1.83e-72 253
Msa0443300 MtrunA17_Chr3g0089421 34.064 593 306 16 33 567 435 1000 2.80e-72 253
Msa0443300 MtrunA17_Chr3g0089781 33.333 621 324 17 1 561 403 993 3.36e-72 251
Msa0443300 MtrunA17_Chr8g0356251 36.577 555 269 15 55 560 486 1006 4.69e-72 252
Msa0443300 MtrunA17_Chr3g0089811 34.017 585 318 17 33 567 433 999 3.90e-71 249
Msa0443300 MtrunA17_Chr3g0089651 34.790 572 299 15 45 567 457 1003 5.92e-71 249
Msa0443300 MtrunA17_Chr3g0085481 42.246 374 93 7 273 531 3 368 8.33e-71 233
Msa0443300 MtrunA17_Chr4g0025391 34.150 612 295 16 45 567 452 1044 9.52e-71 248
Msa0443300 MtrunA17_Chr3g0090371 35.130 575 292 16 45 567 453 998 1.97e-70 247
Msa0443300 MtrunA17_Chr3g0089501 39.100 422 226 7 45 451 451 856 2.86e-70 243
Msa0443300 MtrunA17_Chr3g0089961 36.162 495 246 12 33 475 436 912 6.79e-70 243
Msa0443300 MtrunA17_Chr1g0164391 33.690 561 304 15 50 567 458 993 7.52e-70 245
Msa0443300 MtrunA17_Chr2g0282991 33.725 596 301 11 45 564 449 1026 8.73e-70 245
Msa0443300 MtrunA17_Chr1g0147141 35.197 608 297 19 55 593 465 1044 1.77e-69 243
Msa0443300 MtrunA17_Chr3g0089761 33.904 584 318 16 33 567 433 997 1.19e-68 242
Msa0443300 MtrunA17_Chr3g0082321 37.565 386 222 8 54 435 408 778 5.19e-68 236
Msa0443300 MtrunA17_Chr3g0090141 34.050 605 316 17 28 584 446 1015 6.08e-68 240
Msa0443300 MtrunA17_Chr3g0089541 33.860 570 305 11 45 567 457 1001 8.65e-68 240
Msa0443300 MtrunA17_Chr3g0092241 34.458 563 312 13 45 567 453 998 1.36e-67 238
Msa0443300 MtrunA17_Chr3g0080871 33.118 619 303 16 45 567 438 1041 2.75e-67 238
Msa0443300 MtrunA17_Chr3g0083751 32.190 612 301 15 55 567 465 1061 3.21e-67 238
Msa0443300 MtrunA17_Chr3g0083721 34.111 557 281 13 50 537 398 937 3.40e-67 236
Msa0443300 MtrunA17_Chr3g0087841 35.624 553 304 15 45 569 453 981 4.31e-67 237
Msa0443300 MtrunA17_Chr3g0084811 33.874 555 269 11 53 567 609 1105 4.43e-66 234
Msa0443300 MtrunA17_Chr3g0089471 33.910 578 315 15 45 567 454 1019 4.59e-66 235
Msa0443300 MtrunA17_Chr3g0089591 33.969 577 315 16 45 567 458 1022 2.59e-65 233
Msa0443300 MtrunA17_Chr3g0083621 32.581 620 287 19 55 567 471 1066 3.00e-65 232
Msa0443300 MtrunA17_Chr3g0092261 32.699 578 319 12 45 575 497 1051 3.73e-65 232
Msa0443300 MtrunA17_Chr6g0484551 36.645 453 225 10 45 454 427 860 4.88e-65 229
Msa0443300 MtrunA17_Chr2g0299101 37.940 398 227 6 54 441 463 850 8.33e-65 228
Msa0443300 MtrunA17_Chr1g0164611 33.816 553 293 10 49 567 460 973 1.44e-64 229
Msa0443300 MtrunA17_Chr3g0090401 34.168 559 278 15 56 567 675 1190 2.01e-64 230
Msa0443300 MtrunA17_Chr3g0082391 40.327 367 195 10 54 412 462 812 5.66e-64 225
Msa0443300 MtrunA17_Chr3g0083591 34.342 562 296 19 55 567 425 962 3.01e-63 226
Msa0443300 MtrunA17_Chr3g0083641 31.209 612 307 16 55 567 436 1032 6.32e-63 225
Msa0443300 MtrunA17_Chr3g0089441 33.391 578 269 17 85 569 1 555 7.21e-63 221
Msa0443300 MtrunA17_Chr7g0248531 34.810 474 261 11 56 503 451 902 9.25e-62 220
Msa0443300 MtrunA17_Chr3g0083681 31.433 614 301 16 55 567 437 1031 2.47e-61 221
Msa0443300 MtrunA17_Chr3g0084041 63.636 165 58 1 267 429 1 165 9.27e-61 201
Msa0443300 MtrunA17_Chr5g0446611 40.351 399 209 11 45 432 452 832 1.55e-60 216
Msa0443300 MtrunA17_Chr6g0468451 33.935 554 307 18 48 572 438 961 3.02e-59 214
Msa0443300 MtrunA17_Chr8g0392511 40.401 349 192 6 45 389 10 346 3.17e-59 201
Msa0443300 MtrunA17_Chr1g0168901 32.768 531 299 14 55 561 433 929 7.09e-59 212
Msa0443300 MtrunA17_Chr3g0082371 37.879 396 200 10 54 438 86 446 7.21e-59 204
Msa0443300 MtrunA17_Chr6g0468201 33.395 539 300 16 46 567 45 541 1.15e-58 209
Msa0443300 MtrunA17_Chr6g0470001 34.229 558 298 20 49 575 48 567 3.10e-58 207
Msa0443300 MtrunA17_Chr4g0008461 31.260 627 304 17 45 567 434 1037 1.27e-56 207
Msa0443300 MtrunA17_Chr5g0415551 38.021 384 201 9 56 430 328 683 2.20e-56 202
Msa0443300 MtrunA17_Chr3g0123111 33.696 552 293 19 46 564 437 948 4.92e-56 205
Msa0443300 MtrunA17_Chr6g0470021 32.049 571 307 19 56 578 339 876 5.31e-56 203
Msa0443300 MtrunA17_Chr6g0468121 31.957 557 316 17 46 568 436 963 6.43e-55 202
Msa0443300 MtrunA17_Chr4g0020501 36.074 377 193 5 213 552 479 844 8.92e-55 200
Msa0443300 MtrunA17_Chr3g0082101 36.682 428 204 9 174 567 527 921 1.10e-54 200
Msa0443300 MtrunA17_Chr3g0085931 33.273 553 305 20 46 567 438 957 1.23e-54 201
Msa0443300 MtrunA17_Chr6g0470081 33.095 559 299 20 56 568 448 977 1.70e-54 200
Msa0443300 MtrunA17_Chr6g0467961 34.141 454 254 13 46 485 435 857 3.43e-54 198
Msa0443300 MtrunA17_Chr6g0470011 32.737 559 301 20 56 568 448 977 6.78e-54 199
Msa0443300 MtrunA17_Chr6g0468361 36.277 419 224 13 46 450 45 434 2.81e-53 189
Msa0443300 MtrunA17_Chr6g0468151 32.294 545 306 19 49 569 445 950 5.58e-52 193
Msa0443300 MtrunA17_Chr6g0468271 31.597 576 323 22 46 589 434 970 6.44e-52 193
Msa0443300 MtrunA17_Chr5g0414301 32.240 549 310 19 49 568 8 523 1.07e-51 187
Msa0443300 MtrunA17_Chr3g0091971 31.387 548 269 17 53 567 421 894 9.74e-50 186
Msa0443300 MtrunA17_Chr6g0468021 32.855 557 308 18 46 568 435 959 1.12e-49 186
Msa0443300 MtrunA17_Chr5g0431051 33.447 589 316 24 10 567 399 942 5.15e-49 184
Msa0443300 MtrunA17_Chr5g0414201 32.576 528 275 21 53 539 454 941 1.34e-48 182
Msa0443300 MtrunA17_Chr3g0113481 36.310 336 196 6 56 389 449 768 6.59e-48 179
Msa0443300 MtrunA17_Chr8g0351811 33.136 507 281 16 85 564 1 476 1.35e-47 177
Msa0443300 MtrunA17_Chr3g0085791 52.273 176 47 1 446 584 4 179 2.90e-47 167
Msa0443300 MtrunA17_Chr6g0468101 30.811 555 273 19 46 567 437 913 7.46e-46 174
Msa0443300 MtrunA17_Chr5g0430641 33.641 541 293 19 49 567 444 940 1.45e-45 174
Msa0443300 MtrunA17_Chr5g0430441 33.766 539 295 19 49 567 444 940 3.35e-45 172
Msa0443300 MtrunA17_Chr5g0430581 32.566 565 308 22 49 574 439 969 1.43e-44 171
Msa0443300 MtrunA17_Chr1g0155321 32.496 557 301 22 49 578 440 948 1.72e-44 170
Msa0443300 MtrunA17_Chr5g0429961 32.717 541 294 20 49 567 445 937 4.32e-43 166
Msa0443300 MtrunA17_Chr5g0430141 32.178 606 335 26 10 582 399 961 9.10e-43 165
Msa0443300 MtrunA17_Chr5g0413811 33.333 459 250 16 49 489 225 645 2.44e-42 162
Msa0443300 MtrunA17_Chr5g0430341 33.457 541 293 22 63 582 3 497 6.14e-42 159
Msa0443300 MtrunA17_Chr7g0244231 31.272 566 291 22 49 564 439 956 8.41e-42 162
Msa0443300 MtrunA17_Chr5g0415481 30.648 509 273 18 49 544 18 459 7.48e-41 154
Msa0443300 MtrunA17_Chr5g0414311 30.000 520 290 17 49 552 454 915 2.06e-40 158
Msa0443300 MtrunA17_Chr5g0430511 31.698 530 299 20 56 564 453 940 2.24e-40 158
Msa0443300 MtrunA17_Chr4g0027251 32.082 586 321 23 49 596 445 991 3.08e-40 157
Msa0443300 MtrunA17_Chr5g0430291 32.017 481 266 17 49 504 445 889 6.32e-40 156
Msa0443300 MtrunA17_Chr5g0430721 31.794 563 298 24 49 567 486 1006 2.71e-39 154
Msa0443300 MtrunA17_Chr6g0467911 34.174 357 200 9 50 397 442 772 6.39e-39 153
Msa0443300 MtrunA17_Chr5g0415471 28.996 538 304 15 49 567 452 930 7.48e-39 153
Msa0443300 MtrunA17_Chr2g0316291 32.618 466 254 17 54 487 463 900 1.63e-38 152
Msa0443300 MtrunA17_Chr5g0414161 34.000 350 211 11 195 529 64 408 2.08e-38 146
Msa0443300 MtrunA17_Chr5g0414181 29.379 531 314 19 49 547 449 950 2.15e-38 152
Msa0443300 MtrunA17_Chr2g0282891 41.603 262 126 7 45 299 121 362 4.86e-38 144
Msa0443300 MtrunA17_Chr5g0417251 30.962 478 272 17 49 517 215 643 2.14e-37 147
Msa0443300 MtrunA17_Chr1g0155991 30.325 554 319 20 49 567 442 963 3.38e-37 148
Msa0443300 MtrunA17_Chr3g0087301 30.109 548 312 20 56 567 400 912 4.94e-37 148
Msa0443300 MtrunA17_Chr4g0071011 34.069 408 232 13 182 574 53 438 5.82e-37 144
Msa0443300 MtrunA17_Chr5g0410301 33.090 411 243 15 185 567 548 954 2.95e-36 145
Msa0443300 MtrunA17_Chr2g0299141 36.653 251 148 4 54 302 178 419 1.19e-35 139
Msa0443300 MtrunA17_Chr5g0430621 32.270 533 286 21 49 567 445 916 1.39e-35 143
Msa0443300 MtrunA17_Chr3g0082811 30.993 413 227 19 21 413 419 793 3.38e-34 139
Msa0443300 MtrunA17_Chr5g0430951 34.216 453 244 17 49 481 444 862 7.58e-34 137
Msa0443300 MtrunA17_Chr3g0082881 30.446 404 215 17 56 422 449 823 8.24e-34 137
Msa0443300 MtrunA17_Chr5g0410351 35.667 300 160 10 178 448 539 834 5.37e-33 135
Msa0443300 MtrunA17_Chr5g0429951 31.636 550 296 25 49 567 445 945 1.68e-32 134
Msa0443300 MtrunA17_Chr5g0410261 30.969 423 256 16 178 568 571 989 5.82e-31 129
Msa0443300 MtrunA17_Chr5g0410161 29.384 422 237 15 178 550 686 1095 9.20e-31 129
Msa0443300 MtrunA17_Chr5g0410481 31.166 446 262 16 178 582 529 970 2.99e-30 127
Msa0443300 MtrunA17_Chr6g0456131 27.288 601 333 23 46 568 448 1022 2.17e-29 124
Msa0443300 MtrunA17_Chr5g0410401 33.451 284 163 9 185 447 422 700 5.15e-29 122
Msa0443300 MtrunA17_Chr1g0189521 49.231 130 48 3 281 397 3 127 5.25e-29 112
Msa0443300 MtrunA17_Chr7g0255751 46.277 188 92 6 182 360 34 221 1.21e-28 114
Msa0443300 MtrunA17_Chr3g0091961 34.646 254 132 8 55 296 140 371 2.17e-28 117
Msa0443300 MtrunA17_Chr3g0089911 36.441 236 131 6 45 277 452 671 8.17e-28 119
Msa0443300 MtrunA17_Chr4g0009781 28.136 558 332 22 49 567 445 972 1.02e-27 119
Msa0443300 MtrunA17_Chr4g0010201 32.597 362 213 14 49 395 445 790 2.73e-27 117
Msa0443300 MtrunA17_Chr3g0092291 38.596 228 118 7 45 268 5 214 3.48e-27 114
Msa0443300 MtrunA17_Chr6g0456121 29.957 464 263 19 152 568 512 960 4.39e-27 117
Msa0443300 MtrunA17_Chr4g0010261 30.411 365 228 11 54 403 449 802 5.05e-27 117
Msa0443300 MtrunA17_Chr3g0082891 29.367 395 219 17 56 418 449 815 5.62e-27 116
Msa0443300 MtrunA17_Chr5g0430901 37.209 258 136 9 290 537 546 787 6.02e-26 113
Msa0443300 MtrunA17_Chr4g0010221 25.578 606 347 25 42 567 436 1017 3.73e-25 111
Msa0443300 MtrunA17_Chr3g0082871 34.173 278 147 13 56 323 449 700 1.17e-23 105
Msa0443300 MtrunA17_Chr4g0010251 31.405 363 211 15 49 394 444 785 4.95e-23 104
Msa0443300 MtrunA17_Chr6g0468341 31.419 296 180 11 291 567 468 759 1.54e-22 102
Msa0443300 MtrunA17_Chr6g0468381 29.909 331 169 13 291 569 76 395 1.08e-21 99.4
Msa0443300 MtrunA17_Chr6g0468251 28.169 284 174 9 281 547 4 274 1.37e-20 95.1
Msa0443300 MtrunA17_Chr3g0078351 31.250 256 146 6 328 567 3 244 4.98e-20 93.2
Msa0443300 MtrunA17_Chr3g0089941 33.333 177 101 3 331 490 15 191 1.74e-19 87.4
Msa0443300 MtrunA17_Chr5g0414211 33.659 205 122 7 300 492 1 203 2.30e-17 84.7
Msa0443300 MtrunA17_Chr3g0078361 34.225 187 107 6 45 228 268 441 2.59e-17 84.7
Msa0443300 MtrunA17_Chr3g0085621 40.625 160 74 5 435 582 8 158 6.32e-17 81.3
Msa0443300 MtrunA17_Chr3g0085621 80.000 35 7 0 550 584 2 36 7.30e-11 63.2
Msa0443300 MtrunA17_Chr1g0189511 51.724 87 38 1 45 127 107 193 6.57e-17 81.3
Msa0443300 MtrunA17_Chr1g0189511 63.380 71 23 2 197 265 194 263 1.29e-15 77.4
Msa0443300 MtrunA17_Chr3g0100701 25.667 487 287 23 56 518 305 740 6.61e-17 84.7
Msa0443300 MtrunA17_Chr2g0309151 31.140 228 134 6 56 280 248 455 1.03e-16 83.2
Msa0443300 MtrunA17_Chr8g0355411 26.923 390 222 17 56 418 463 816 2.48e-15 79.7
Msa0443300 MtrunA17_Chr3g0089921 27.303 304 116 10 355 564 2 294 1.08e-14 77.0
Msa0443300 MtrunA17_Chr3g0112511 29.818 275 177 10 176 446 569 831 1.24e-14 77.8
Msa0443300 MtrunA17_Chr8g0363851 30.685 365 205 13 182 517 627 972 2.88e-13 73.6
Msa0443300 MtrunA17_Chr7g0248221 27.146 431 235 19 56 475 469 831 6.43e-13 72.0
Msa0443300 MtrunA17_Chr3g0081341 31.077 325 193 13 178 485 645 955 7.11e-13 72.0
Msa0443300 MtrunA17_Chr3g0100731 24.590 366 231 14 56 412 230 559 7.46e-13 71.6
Msa0443300 MtrunA17_Chr8g0338861 25.137 549 330 26 46 568 156 649 8.32e-13 71.6
Msa0443300 MtrunA17_Chr1g0189281 29.052 327 207 13 170 482 58 373 1.68e-12 69.3
Msa0443300 MtrunA17_Chr6g0468131 30.047 213 132 7 369 569 4 211 1.92e-12 69.3
Msa0443300 MtrunA17_Chr2g0308471 38.053 113 36 1 397 475 9 121 2.10e-12 64.7
Msa0443300 MtrunA17_Chr7g0257201 30.222 225 134 6 56 277 480 684 5.44e-12 68.9
Msa0443300 MtrunA17_Chr5g0409991 24.268 478 278 18 28 465 420 853 1.32e-11 67.8
Msa0443300 MtrunA17_Chr6g0468111 27.799 259 148 9 46 296 279 506 3.40e-11 65.9
Msa0443300 MtrunA17_Chr5g0410021 24.434 442 236 16 74 461 475 872 3.91e-11 66.2
Msa0443300 MtrunA17_Chr3g0100831 24.541 436 262 20 76 480 493 892 4.10e-11 66.2
Msa0443300 MtrunA17_Chr5g0414221 42.424 99 53 3 185 281 50 146 4.21e-11 61.6
Msa0443300 MtrunA17_Chr8g0338671 29.596 223 124 9 46 260 335 532 6.64e-11 65.5
Msa0443300 MtrunA17_Chr3g0081361 29.217 332 191 13 178 485 586 897 9.02e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0443300 AT3G14460.1 35.062 482 246 7 28 465 441 899 7.48e-70 246
Msa0443300 AT3G14470.1 33.058 605 292 14 45 591 456 1005 2.20e-69 243
Msa0443300 AT3G14470.2 33.058 605 292 14 45 591 456 1005 2.20e-69 243
Msa0443300 AT1G69550.1 31.016 374 204 20 216 569 871 1210 2.53e-12 70.9
Msa0443300 AT1G69550.1 34.722 288 151 16 195 470 969 1231 5.70e-12 69.7

Find 126 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTTGGGACAACTCTTTA+TGG 0.133258 3_3:-13958173 None:intergenic
ACAATATTGGATTTAGAAAT+TGG 0.180709 3_3:-13957270 None:intergenic
TTACAAGCCCTTAGCCAATT+TGG 0.206689 3_3:-13957894 None:intergenic
CGAGGGAAACTTTGTATATC+AGG 0.224912 3_3:+13957678 Msa0443300:CDS
CAGATCACGTTGTACAATAT+TGG 0.252558 3_3:-13957283 None:intergenic
CTTTAAAGAATTGCCCTCTT+TGG 0.257245 3_3:+13958454 Msa0443300:CDS
AGTAGGATGTGATAAAATTT+TGG 0.262281 3_3:+13958306 Msa0443300:CDS
GAGACACCAGCTTTCCAAAT+TGG 0.262411 3_3:+13957880 Msa0443300:CDS
TCTCTTGAAGCAATTAGTTT+TGG 0.263428 3_3:-13958662 None:intergenic
AGCCTCTTCAGGATGCTATT+TGG 0.267760 3_3:-13957840 None:intergenic
GAATAGTGGGTCGGATATTA+AGG 0.270189 3_3:+13957632 Msa0443300:CDS
TTTAGCCTCTCTATCTGTTT+TGG 0.270413 3_3:-13957573 None:intergenic
CTTCGCAAACTTTATATAGA+AGG 0.289460 3_3:+13958497 Msa0443300:CDS
TGTCTTACACAGGGATAAAA+AGG 0.293439 3_3:+13957409 Msa0443300:CDS
ATTCAAGACTAAAATATTTA+CGG 0.310840 3_3:+13957307 Msa0443300:CDS
CAATTTACGTCATCTCTATC+TGG 0.312119 3_3:+13957527 Msa0443300:CDS
TATAGATTACAAATGGATTC+AGG 0.322435 3_3:-13957435 None:intergenic
AATTGCTTCAAGAGAGGATT+GGG 0.344362 3_3:+13958670 Msa0443300:CDS
AGACATAAGTGAAGAAAAGT+TGG 0.346848 3_3:+13956924 Msa0443300:CDS
ATGAAGAGGTATGAGACTTT+TGG 0.353500 3_3:+13957231 Msa0443300:CDS
AAGAACAGATTGTCAAGCTT+TGG 0.356511 3_3:+13956870 Msa0443300:intron
CAGAGCTGGAATCGTTTCAT+AGG 0.367347 3_3:+13958594 Msa0443300:CDS
TAATATCTCTTAAACTGTAT+TGG 0.373643 3_3:+13957928 Msa0443300:CDS
TCATCAATCTTCATTCTCTC+AGG 0.398069 3_3:+13958558 Msa0443300:CDS
CTCAAAGAACACGTCACATT+TGG 0.407522 3_3:+13957109 Msa0443300:CDS
ATGAACAAGTTTAGTGCAAA+GGG 0.412517 3_3:-13958539 None:intergenic
TTCCTCGATCCATGATCATT+AGG 0.414996 3_3:-13956139 None:intergenic
ATTCAATGGTTAGCCTCTTC+AGG 0.418752 3_3:-13957851 None:intergenic
AGTTTAAGAGATATTAAGTT+GGG 0.427274 3_3:-13957921 None:intergenic
CTATGAAACGATTCCAGCTC+TGG 0.430299 3_3:-13958593 None:intergenic
TAAATTATATAGATTACAAA+TGG 0.437587 3_3:-13957442 None:intergenic
GCTGCCCAAGTGGTGGCAAA+TGG 0.437712 3_3:-13957965 None:intergenic
AATGTGAATTCACAGATTGT+TGG 0.443540 3_3:-13956987 None:intergenic
AAACGGCGATGTGGGACCTT+AGG 0.443996 3_3:-13958796 None:intergenic
TAGTGCAAAGGGGAAGGAGG+AGG 0.452965 3_3:-13958528 None:intergenic
CAAATGTGACGTGTTCTTTG+AGG 0.458909 3_3:-13957108 None:intergenic
CCTTAGCCAATTTGGAAAGC+TGG 0.460586 3_3:-13957886 None:intergenic
ATCTCAAAACAGAGAGCTCC+AGG 0.461402 3_3:-13956196 None:intergenic
TGTTCCCATTTGCCACCACT+TGG 0.462911 3_3:+13957960 Msa0443300:CDS
TGGAAGAATTGTATATGAAA+TGG 0.466143 3_3:+13957763 Msa0443300:CDS
GGGTCGGATATTAAGGAGTT+GGG 0.471207 3_3:+13957639 Msa0443300:CDS
GTCTCTGATATTATCAACCT+TGG 0.472087 3_3:-13958275 None:intergenic
TGGGTCGGATATTAAGGAGT+TGG 0.478641 3_3:+13957638 Msa0443300:CDS
GAAACTTTGTATATCAGGGT+TGG 0.479839 3_3:+13957683 Msa0443300:CDS
AAATGTGACGTGTTCTTTGA+GGG 0.480564 3_3:-13957107 None:intergenic
CAAAATGTTAACTTTCAGCC+TGG 0.483662 3_3:+13956178 Msa0443300:CDS
GTTGTTCAATTGTCCAGAGC+TGG 0.485840 3_3:+13958580 Msa0443300:CDS
GACATAAGTGAAGAAAAGTT+GGG 0.490948 3_3:+13956925 Msa0443300:CDS
CCAGCTTTCCAAATTGGCTA+AGG 0.492318 3_3:+13957886 Msa0443300:CDS
CAGTTTAAGAGATATTAAGT+TGG 0.494841 3_3:-13957922 None:intergenic
TTACGGATGATATCATTCAA+TGG 0.499007 3_3:+13957324 Msa0443300:CDS
GGAAAATTGATTCATCTTCG+AGG 0.499121 3_3:+13957660 Msa0443300:CDS
CTGCCCAAGTGGTGGCAAAT+GGG 0.499423 3_3:-13957964 None:intergenic
TAATTGCTTCAAGAGAGGAT+TGG 0.500058 3_3:+13958669 Msa0443300:CDS
GGTGGCAGCAGACTCTCCTA+TGG 0.501297 3_3:-13958763 None:intergenic
TGGAATATGCCTAATGATCA+TGG 0.502013 3_3:+13956130 None:intergenic
TCTCTATCAGAGAATTGAGT+TGG 0.502273 3_3:-13958700 None:intergenic
GAAAATTGATTCATCTTCGA+GGG 0.502808 3_3:+13957661 Msa0443300:CDS
AATCAGTCAGCGTTAGAAGA+TGG 0.503077 3_3:-13957596 None:intergenic
GATCATGGATCGAGGAAACT+AGG 0.505088 3_3:+13956145 Msa0443300:CDS
TTTGCTTCTGCAGCATCCGC+AGG 0.505798 3_3:-13957720 None:intergenic
TGTAAAGAAGGAAGGAGTTG+AGG 0.506873 3_3:-13958208 None:intergenic
ATGGAAAGCTCTTTAAGCAA+AGG 0.510412 3_3:-13958154 None:intergenic
GCTTATCTCATGAGCTAGCT+CGG 0.513650 3_3:-13957358 None:intergenic
TCTAAAGGGAGCTCAGTCAA+TGG 0.516245 3_3:-13957489 None:intergenic
TGGAGATTAGTAATTGTGAA+TGG 0.517762 3_3:+13958236 Msa0443300:CDS
CAGCTTTCCAAATTGGCTAA+GGG 0.517923 3_3:+13957887 Msa0443300:CDS
GATTTAGCAAAATCAGTGTC+AGG 0.519412 3_3:+13957042 Msa0443300:CDS
GGTGTCTCTGTAGCATTCAA+TGG 0.520492 3_3:-13957865 None:intergenic
GAGTTGTCCCAAATTGAAAA+CGG 0.523935 3_3:+13958180 Msa0443300:CDS
GAATTCACATTCTAGTGGTA+TGG 0.525715 3_3:+13956999 Msa0443300:CDS
AGAGCTGGAATCGTTTCATA+GGG 0.526200 3_3:+13958595 Msa0443300:CDS
TCTCTGATATTATCAACCTT+GGG 0.528702 3_3:-13958274 None:intergenic
GCAAACTTTATATAGAAGGC+TGG 0.529692 3_3:+13958501 Msa0443300:CDS
GATTAGTAATTGTGAATGGT+TGG 0.531546 3_3:+13958240 Msa0443300:CDS
TCAAAGACTAATCAGTCAAA+CGG 0.533516 3_3:-13958813 None:intergenic
TTTGAAAGATAAGAAATATG+TGG 0.535322 3_3:+13957743 Msa0443300:CDS
TATTTCAAGCCTCCTCAAGT+TGG 0.535727 3_3:-13958630 None:intergenic
ACGCTGACTGATTTCGTCGT+GGG 0.546534 3_3:+13957606 Msa0443300:CDS
CTTTCTATTTCAGACTGTAA+CGG 0.547534 3_3:+13958005 Msa0443300:CDS
GTCAAGCTTTGGATGGCAGA+AGG 0.549433 3_3:+13956881 Msa0443300:CDS
TTCGTCGTGGGAAAGAATAG+TGG 0.550382 3_3:+13957618 Msa0443300:CDS
GATGAACAAGTTTAGTGCAA+AGG 0.555645 3_3:-13958540 None:intergenic
GAGGGAAACTTTGTATATCA+GGG 0.557634 3_3:+13957679 Msa0443300:CDS
TAGCGATGACTTTGAAAATG+TGG 0.561654 3_3:+13958732 Msa0443300:CDS
GTTCCCATTTGCCACCACTT+GGG 0.571956 3_3:+13957961 Msa0443300:CDS
ATAGAAAGCTCCTTGAGAGA+AGG 0.572730 3_3:-13957990 None:intergenic
TGGGCAGCTACCTTCTCTCA+AGG 0.573087 3_3:+13957980 Msa0443300:CDS
AAAACTAATTGCTTCAAGAG+AGG 0.574744 3_3:+13958664 Msa0443300:CDS
ACAGATTGTCAAGCTTTGGA+TGG 0.575435 3_3:+13956874 Msa0443300:CDS
ATCAGAGACTTAGAGCTAGT+AGG 0.576752 3_3:+13958289 Msa0443300:CDS
GCGGTTTGCCTTCCAACTTG+AGG 0.578437 3_3:+13958618 Msa0443300:CDS
GTTTAGTGCAAAGGGGAAGG+AGG 0.578649 3_3:-13958531 None:intergenic
TCAAGCCTCCTCAAGTTGGA+AGG 0.581355 3_3:-13958626 None:intergenic
CAAGTTTAGTGCAAAGGGGA+AGG 0.583829 3_3:-13958534 None:intergenic
AATCAGTCAAACGGCGATGT+GGG 0.584168 3_3:-13958804 None:intergenic
GTTTGCCTTCCAACTTGAGG+AGG 0.585592 3_3:+13958621 Msa0443300:CDS
AACCAAATAGCATCCTGAAG+AGG 0.588564 3_3:+13957838 Msa0443300:CDS
AACGCTGACTGATTTCGTCG+TGG 0.591290 3_3:+13957605 Msa0443300:CDS
TATCTAGACTTGTCTTACAC+AGG 0.591970 3_3:+13957399 Msa0443300:CDS
TTACGTCATCTCTATCTGGA+AGG 0.604837 3_3:+13957531 Msa0443300:CDS
TAATCAGTCAAACGGCGATG+TGG 0.605115 3_3:-13958805 None:intergenic
CTGGAATCGTTTCATAGGGG+CGG 0.605558 3_3:+13958599 Msa0443300:CDS
TGATGCCAAAACAGATAGAG+AGG 0.606731 3_3:+13957568 Msa0443300:CDS
GTGGCAGCAGACTCTCCTAT+GGG 0.608072 3_3:-13958762 None:intergenic
TCTCTTAAACTGTATTGGTG+TGG 0.611736 3_3:+13957933 Msa0443300:CDS
TCGTCGTGGGAAAGAATAGT+GGG 0.614898 3_3:+13957619 Msa0443300:CDS
GTTGGAAGCATCAATTCCCA+AGG 0.618334 3_3:+13958258 Msa0443300:CDS
TGAGTGTTTACGTGGTCTGA+TGG 0.619425 3_3:+13957185 Msa0443300:CDS
GAATTGGAGTTGGATGTAAG+TGG 0.622414 3_3:+13958431 Msa0443300:intron
GAAGGTAGCTGCCCAAGTGG+TGG 0.624815 3_3:-13957972 None:intergenic
CAGCAGACTCTCCTATGGGA+AGG 0.632923 3_3:-13958758 None:intergenic
TAACAGCGCAAATCCAAAGA+GGG 0.636340 3_3:-13958467 None:intergenic
AAATGTGGAGTCCTTCCCAT+AGG 0.636881 3_3:+13958747 Msa0443300:CDS
TGTAAGATTGAGTGTTTACG+TGG 0.637423 3_3:+13957177 Msa0443300:CDS
GGAAAATGTCATTAATCCTG+CGG 0.647584 3_3:+13957704 Msa0443300:CDS
ATCTAGACTTGTCTTACACA+GGG 0.650219 3_3:+13957400 Msa0443300:CDS
TGCCTAATGATCATGGATCG+AGG 0.656032 3_3:+13956137 Msa0443300:CDS
ATAACAGCGCAAATCCAAAG+AGG 0.660929 3_3:-13958468 None:intergenic
CGTGGGAAAGAATAGTGGGT+CGG 0.663773 3_3:+13957623 Msa0443300:CDS
ATTGCTTCAAGAGAGGATTG+GGG 0.664285 3_3:+13958671 Msa0443300:CDS
TCTGTGAATTCACATTCTAG+TGG 0.664973 3_3:+13956994 Msa0443300:CDS
AGAGAAGGTAGCTGCCCAAG+TGG 0.675912 3_3:-13957975 None:intergenic
TGAACAAGTTTAGTGCAAAG+GGG 0.676246 3_3:-13958538 None:intergenic
TCTCATGAGCTAGCTCGGAG+AGG 0.693614 3_3:-13957353 None:intergenic
GAGCTGGAATCGTTTCATAG+GGG 0.721336 3_3:+13958596 Msa0443300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTATATAGATTACAAA+TGG - chr3_3:13957445-13957464 None:intergenic 10.0%
!! TTGTCAAAAAACATATAAAA+AGG + chr3_3:13956275-13956294 Msa0443300:intron 15.0%
!! ATTCAAGACTAAAATATTTA+CGG + chr3_3:13957307-13957326 Msa0443300:CDS 15.0%
!! AAAAAACATATAAAAAGGTG+CGG + chr3_3:13956280-13956299 Msa0443300:intron 20.0%
!! TATCCAAATCTTAAATCAAT+TGG + chr3_3:13956600-13956619 Msa0443300:intron 20.0%
!!! TTTCCAATTGATTTAAGATT+TGG - chr3_3:13956606-13956625 None:intergenic 20.0%
!!! TTTCAAAGAAAATTTTCACA+AGG + chr3_3:13956684-13956703 Msa0443300:intron 20.0%
!!! AGAATTTTGTTTTCTAATTG+AGG + chr3_3:13957065-13957084 Msa0443300:CDS 20.0%
!!! GAATTTTGTTTTCTAATTGA+GGG + chr3_3:13957066-13957085 Msa0443300:CDS 20.0%
!! ACAATATTGGATTTAGAAAT+TGG - chr3_3:13957273-13957292 None:intergenic 20.0%
!! CAAGTTTGAAAAAATCTAAA+GGG - chr3_3:13957506-13957525 None:intergenic 20.0%
!! ACAAGTTTGAAAAAATCTAA+AGG - chr3_3:13957507-13957526 None:intergenic 20.0%
!! TTTGAAAGATAAGAAATATG+TGG + chr3_3:13957743-13957762 Msa0443300:CDS 20.0%
!! AGTTTCAAATTCAAAAACAA+TGG + chr3_3:13957786-13957805 Msa0443300:CDS 20.0%
!! AGTTTAAGAGATATTAAGTT+GGG - chr3_3:13957924-13957943 None:intergenic 20.0%
!! TAATATCTCTTAAACTGTAT+TGG + chr3_3:13957928-13957947 Msa0443300:CDS 20.0%
!! AAAAACATATAAAAAGGTGC+GGG + chr3_3:13956281-13956300 Msa0443300:intron 25.0%
! TAATAGCTTTCTCGTATAAT+TGG + chr3_3:13956314-13956333 Msa0443300:intron 25.0%
!! ATTGCTTTAAATGAAGTTGA+TGG - chr3_3:13956516-13956535 None:intergenic 25.0%
!!! TTTGTTAATCATGCTTTTTG+AGG + chr3_3:13956561-13956580 Msa0443300:intron 25.0%
! TCTTAAATCAATTGGAAAGA+AGG + chr3_3:13956608-13956627 Msa0443300:intron 25.0%
!! ATGGTTTGACTTTAACATAT+TGG + chr3_3:13956710-13956729 Msa0443300:intron 25.0%
! TGATAACTCAATCTCAATAA+CGG - chr3_3:13956780-13956799 None:intergenic 25.0%
! AGATTGTTGGAAAAATGAAA+TGG - chr3_3:13956977-13956996 None:intergenic 25.0%
!! TGATGGTACAACAAAAATTT+TGG + chr3_3:13957202-13957221 Msa0443300:CDS 25.0%
!!! AATTTTGGCAATATATGAAG+AGG + chr3_3:13957217-13957236 Msa0443300:CDS 25.0%
!! ACTTTTGGTCATATGATTTT+AGG + chr3_3:13957246-13957265 Msa0443300:CDS 25.0%
!! CTTTTGGTCATATGATTTTA+GGG + chr3_3:13957247-13957266 Msa0443300:CDS 25.0%
!! TATAGATTACAAATGGATTC+AGG - chr3_3:13957438-13957457 None:intergenic 25.0%
! TGGAAGAATTGTATATGAAA+TGG + chr3_3:13957763-13957782 Msa0443300:CDS 25.0%
! CAGTTTAAGAGATATTAAGT+TGG - chr3_3:13957925-13957944 None:intergenic 25.0%
!! ATCTCCAATTTTTGTAAAGA+AGG - chr3_3:13958223-13958242 None:intergenic 25.0%
!! AGTAGGATGTGATAAAATTT+TGG + chr3_3:13958306-13958325 Msa0443300:CDS 25.0%
!!! GTTGAATAAATTTTGGTTCA+TGG - chr3_3:13958395-13958414 None:intergenic 25.0%
GTTTCAAAGCATAGATCTTT+AGG + chr3_3:13956435-13956454 Msa0443300:intron 30.0%
!! CTTTAAATGAAGTTGATGGT+CGG - chr3_3:13956512-13956531 None:intergenic 30.0%
!! TTAATCATGCTTTTTGAGGA+AGG + chr3_3:13956565-13956584 Msa0443300:intron 30.0%
AAGAAGGTTGTATAAAAGTG+TGG + chr3_3:13956624-13956643 Msa0443300:intron 30.0%
! GAAAATTTTCACAAGGTGAA+TGG + chr3_3:13956691-13956710 Msa0443300:intron 30.0%
GATAACTCAATCTCAATAAC+GGG - chr3_3:13956779-13956798 None:intergenic 30.0%
!! TTTTTCAAACACAAACCCTT+GGG - chr3_3:13956852-13956871 None:intergenic 30.0%
AGACATAAGTGAAGAAAAGT+TGG + chr3_3:13956924-13956943 Msa0443300:CDS 30.0%
GACATAAGTGAAGAAAAGTT+GGG + chr3_3:13956925-13956944 Msa0443300:CDS 30.0%
AATGTGAATTCACAGATTGT+TGG - chr3_3:13956990-13957009 None:intergenic 30.0%
TTACGGATGATATCATTCAA+TGG + chr3_3:13957324-13957343 Msa0443300:CDS 30.0%
! GAAAATTGATTCATCTTCGA+GGG + chr3_3:13957661-13957680 Msa0443300:CDS 30.0%
CAAAAACAATGGAAGAGAAT+TGG + chr3_3:13957797-13957816 Msa0443300:CDS 30.0%
!! AAGAGAATTGGATGTTTTTG+AGG + chr3_3:13957809-13957828 Msa0443300:CDS 30.0%
CTTTCTATTTCAGACTGTAA+CGG + chr3_3:13958005-13958024 Msa0443300:CDS 30.0%
TGCAAATTCCAAAACTTCAA+GGG - chr3_3:13958090-13958109 None:intergenic 30.0%
ATGCAAATTCCAAAACTTCA+AGG - chr3_3:13958091-13958110 None:intergenic 30.0%
!!! GAAGTTTTGGAATTTGCATA+TGG + chr3_3:13958092-13958111 Msa0443300:intron 30.0%
TTTGCATATGGATGAACAAT+TGG + chr3_3:13958104-13958123 Msa0443300:intron 30.0%
TTGCATATGGATGAACAATT+GGG + chr3_3:13958105-13958124 Msa0443300:intron 30.0%
! CCAATTTTTGTAAAGAAGGA+AGG - chr3_3:13958219-13958238 None:intergenic 30.0%
CCTTCCTTCTTTACAAAAAT+TGG + chr3_3:13958216-13958235 Msa0443300:CDS 30.0%
TGGAGATTAGTAATTGTGAA+TGG + chr3_3:13958236-13958255 Msa0443300:CDS 30.0%
GATTAGTAATTGTGAATGGT+TGG + chr3_3:13958240-13958259 Msa0443300:CDS 30.0%
TCTCTGATATTATCAACCTT+GGG - chr3_3:13958277-13958296 None:intergenic 30.0%
! AATTGTCACTTAGCTTGAAA+AGG + chr3_3:13958335-13958354 Msa0443300:intron 30.0%
!!! GGGTGTTGTTGAATAAATTT+TGG - chr3_3:13958402-13958421 None:intergenic 30.0%
AACTCCAATTCATCAAGAAA+GGG - chr3_3:13958422-13958441 None:intergenic 30.0%
CTTCGCAAACTTTATATAGA+AGG + chr3_3:13958497-13958516 Msa0443300:CDS 30.0%
ATGAACAAGTTTAGTGCAAA+GGG - chr3_3:13958542-13958561 None:intergenic 30.0%
!! TCTCTTGAAGCAATTAGTTT+TGG - chr3_3:13958665-13958684 None:intergenic 30.0%
AAAACTAATTGCTTCAAGAG+AGG + chr3_3:13958664-13958683 Msa0443300:CDS 30.0%
CAAAATGTTAACTTTCAGCC+TGG + chr3_3:13956178-13956197 Msa0443300:CDS 35.0%
! ATATAAAAAGGTGCGGGAAA+TGG + chr3_3:13956287-13956306 Msa0443300:intron 35.0%
! TATAAAAAGGTGCGGGAAAT+GGG + chr3_3:13956288-13956307 Msa0443300:intron 35.0%
CTTTAGCCGTGAAAACATTA+GGG + chr3_3:13956655-13956674 Msa0443300:intron 35.0%
! GAGATTCCCTAATGTTTTCA+CGG - chr3_3:13956664-13956683 None:intergenic 35.0%
AAACAACGCTTCAGATTGAA+AGG - chr3_3:13956810-13956829 None:intergenic 35.0%
ATATTGTTCCATGTTTCCCA+AGG + chr3_3:13956833-13956852 Msa0443300:intron 35.0%
TATTGTTCCATGTTTCCCAA+GGG + chr3_3:13956834-13956853 Msa0443300:intron 35.0%
!!! CTTTTTCAAACACAAACCCT+TGG - chr3_3:13956853-13956872 None:intergenic 35.0%
AAGAACAGATTGTCAAGCTT+TGG + chr3_3:13956870-13956889 Msa0443300:intron 35.0%
! GGAAAAATGAAATGGACTCA+AGG - chr3_3:13956969-13956988 None:intergenic 35.0%
TCTGTGAATTCACATTCTAG+TGG + chr3_3:13956994-13957013 Msa0443300:CDS 35.0%
GAATTCACATTCTAGTGGTA+TGG + chr3_3:13956999-13957018 Msa0443300:CDS 35.0%
GATTTAGCAAAATCAGTGTC+AGG + chr3_3:13957042-13957061 Msa0443300:CDS 35.0%
AAATGTGACGTGTTCTTTGA+GGG - chr3_3:13957110-13957129 None:intergenic 35.0%
TGTAAGATTGAGTGTTTACG+TGG + chr3_3:13957177-13957196 Msa0443300:CDS 35.0%
!! ATGAAGAGGTATGAGACTTT+TGG + chr3_3:13957231-13957250 Msa0443300:CDS 35.0%
CAGATCACGTTGTACAATAT+TGG - chr3_3:13957286-13957305 None:intergenic 35.0%
TATCTAGACTTGTCTTACAC+AGG + chr3_3:13957399-13957418 Msa0443300:CDS 35.0%
ATCTAGACTTGTCTTACACA+GGG + chr3_3:13957400-13957419 Msa0443300:CDS 35.0%
TGTCTTACACAGGGATAAAA+AGG + chr3_3:13957409-13957428 Msa0443300:CDS 35.0%
CAATTTACGTCATCTCTATC+TGG + chr3_3:13957527-13957546 Msa0443300:CDS 35.0%
! TTTAGCCTCTCTATCTGTTT+TGG - chr3_3:13957576-13957595 None:intergenic 35.0%
! GGAAAATTGATTCATCTTCG+AGG + chr3_3:13957660-13957679 Msa0443300:CDS 35.0%
GAGGGAAACTTTGTATATCA+GGG + chr3_3:13957679-13957698 Msa0443300:CDS 35.0%
GAAACTTTGTATATCAGGGT+TGG + chr3_3:13957683-13957702 Msa0443300:CDS 35.0%
GGAAAATGTCATTAATCCTG+CGG + chr3_3:13957704-13957723 Msa0443300:CDS 35.0%
! TCTCTTAAACTGTATTGGTG+TGG + chr3_3:13957933-13957952 Msa0443300:CDS 35.0%
! ATCATCAGCGAAGAGTTTTA+TGG + chr3_3:13958035-13958054 Msa0443300:CDS 35.0%
GTTCAACAAATGTTTCGTTC+AGG + chr3_3:13958063-13958082 Msa0443300:intron 35.0%
ATGGAAAGCTCTTTAAGCAA+AGG - chr3_3:13958157-13958176 None:intergenic 35.0%
! CAATTTGGGACAACTCTTTA+TGG - chr3_3:13958176-13958195 None:intergenic 35.0%
GAGTTGTCCCAAATTGAAAA+CGG + chr3_3:13958180-13958199 Msa0443300:CDS 35.0%
GTCTCTGATATTATCAACCT+TGG - chr3_3:13958278-13958297 None:intergenic 35.0%
AACACCCTTTCTTGATGAAT+TGG + chr3_3:13958415-13958434 Msa0443300:intron 35.0%
CAACTCCAATTCATCAAGAA+AGG - chr3_3:13958423-13958442 None:intergenic 35.0%
CTTTCTTGATGAATTGGAGT+TGG + chr3_3:13958421-13958440 Msa0443300:intron 35.0%
! CTTTAAAGAATTGCCCTCTT+TGG + chr3_3:13958454-13958473 Msa0443300:CDS 35.0%
GCAAACTTTATATAGAAGGC+TGG + chr3_3:13958501-13958520 Msa0443300:CDS 35.0%
TGAACAAGTTTAGTGCAAAG+GGG - chr3_3:13958541-13958560 None:intergenic 35.0%
GATGAACAAGTTTAGTGCAA+AGG - chr3_3:13958543-13958562 None:intergenic 35.0%
TCATCAATCTTCATTCTCTC+AGG + chr3_3:13958558-13958577 Msa0443300:CDS 35.0%
TAATTGCTTCAAGAGAGGAT+TGG + chr3_3:13958669-13958688 Msa0443300:CDS 35.0%
AATTGCTTCAAGAGAGGATT+GGG + chr3_3:13958670-13958689 Msa0443300:CDS 35.0%
TCTCTATCAGAGAATTGAGT+TGG - chr3_3:13958703-13958722 None:intergenic 35.0%
! TAGCGATGACTTTGAAAATG+TGG + chr3_3:13958732-13958751 Msa0443300:CDS 35.0%
ACCTTAGGTCAAAAATTTGG+TGG - chr3_3:13958784-13958803 None:intergenic 35.0%
TTCCTCGATCCATGATCATT+AGG - chr3_3:13956142-13956161 None:intergenic 40.0%
! CCTAATGTTTTCACGGCTAA+AGG - chr3_3:13956657-13956676 None:intergenic 40.0%
CCTTTAGCCGTGAAAACATT+AGG + chr3_3:13956654-13956673 Msa0443300:intron 40.0%
TGATATGTCGCATGTATCGA+AGG + chr3_3:13956737-13956756 Msa0443300:intron 40.0%
GATATGTCGCATGTATCGAA+GGG + chr3_3:13956738-13956757 Msa0443300:intron 40.0%
!! ACAGATTGTCAAGCTTTGGA+TGG + chr3_3:13956874-13956893 Msa0443300:CDS 40.0%
CAAATGTGACGTGTTCTTTG+AGG - chr3_3:13957111-13957130 None:intergenic 40.0%
CTCAAAGAACACGTCACATT+TGG + chr3_3:13957109-13957128 Msa0443300:CDS 40.0%
TTACGTCATCTCTATCTGGA+AGG + chr3_3:13957531-13957550 Msa0443300:CDS 40.0%
TGATGCCAAAACAGATAGAG+AGG + chr3_3:13957568-13957587 Msa0443300:CDS 40.0%
AATCAGTCAGCGTTAGAAGA+TGG - chr3_3:13957599-13957618 None:intergenic 40.0%
!! GAATAGTGGGTCGGATATTA+AGG + chr3_3:13957632-13957651 Msa0443300:CDS 40.0%
CGAGGGAAACTTTGTATATC+AGG + chr3_3:13957678-13957697 Msa0443300:CDS 40.0%
AACCAAATAGCATCCTGAAG+AGG + chr3_3:13957838-13957857 Msa0443300:CDS 40.0%
!! ATTCAATGGTTAGCCTCTTC+AGG - chr3_3:13957854-13957873 None:intergenic 40.0%
CAGCTTTCCAAATTGGCTAA+GGG + chr3_3:13957887-13957906 Msa0443300:CDS 40.0%
TTACAAGCCCTTAGCCAATT+TGG - chr3_3:13957897-13957916 None:intergenic 40.0%
ATAGAAAGCTCCTTGAGAGA+AGG - chr3_3:13957993-13958012 None:intergenic 40.0%
CATATGGATGAACAATTGGG+AGG + chr3_3:13958108-13958127 Msa0443300:intron 40.0%
!!! AGGAATGGTTTTGTCTCGAA+GGG + chr3_3:13958128-13958147 Msa0443300:intron 40.0%
!! GGCAAAGCCGTTTTCAATTT+GGG - chr3_3:13958190-13958209 None:intergenic 40.0%
!! AGGCAAAGCCGTTTTCAATT+TGG - chr3_3:13958191-13958210 None:intergenic 40.0%
TGTAAAGAAGGAAGGAGTTG+AGG - chr3_3:13958211-13958230 None:intergenic 40.0%
ATCAGAGACTTAGAGCTAGT+AGG + chr3_3:13958289-13958308 Msa0443300:CDS 40.0%
TTGAAAAGGTTTGTCCTTCG+TGG + chr3_3:13958349-13958368 Msa0443300:intron 40.0%
GAATTGGAGTTGGATGTAAG+TGG + chr3_3:13958431-13958450 Msa0443300:intron 40.0%
TAACAGCGCAAATCCAAAGA+GGG - chr3_3:13958470-13958489 None:intergenic 40.0%
ATAACAGCGCAAATCCAAAG+AGG - chr3_3:13958471-13958490 None:intergenic 40.0%
AGAGCTGGAATCGTTTCATA+GGG + chr3_3:13958595-13958614 Msa0443300:CDS 40.0%
TATTTCAAGCCTCCTCAAGT+TGG - chr3_3:13958633-13958652 None:intergenic 40.0%
ATTGCTTCAAGAGAGGATTG+GGG + chr3_3:13958671-13958690 Msa0443300:CDS 40.0%
! GCCACCAAATTTTTGACCTA+AGG + chr3_3:13958780-13958799 Msa0443300:CDS 40.0%
GGGACCTTAGGTCAAAAATT+TGG - chr3_3:13958787-13958806 None:intergenic 40.0%
TGCCTAATGATCATGGATCG+AGG + chr3_3:13956137-13956156 Msa0443300:CDS 45.0%
GATCATGGATCGAGGAAACT+AGG + chr3_3:13956145-13956164 Msa0443300:CDS 45.0%
ATCTCAAAACAGAGAGCTCC+AGG - chr3_3:13956199-13956218 None:intergenic 45.0%
!!! CTCTCTGTTTTGAGATGCTC+TGG + chr3_3:13956203-13956222 Msa0443300:CDS 45.0%
ACACAAACCCTTGGGAAACA+TGG - chr3_3:13956844-13956863 None:intergenic 45.0%
TGAGTGTTTACGTGGTCTGA+TGG + chr3_3:13957185-13957204 Msa0443300:CDS 45.0%
GCTTATCTCATGAGCTAGCT+CGG - chr3_3:13957361-13957380 None:intergenic 45.0%
TCTAAAGGGAGCTCAGTCAA+TGG - chr3_3:13957492-13957511 None:intergenic 45.0%
TTCGTCGTGGGAAAGAATAG+TGG + chr3_3:13957618-13957637 Msa0443300:CDS 45.0%
TCGTCGTGGGAAAGAATAGT+GGG + chr3_3:13957619-13957638 Msa0443300:CDS 45.0%
TGGGTCGGATATTAAGGAGT+TGG + chr3_3:13957638-13957657 Msa0443300:CDS 45.0%
GGGTCGGATATTAAGGAGTT+GGG + chr3_3:13957639-13957658 Msa0443300:CDS 45.0%
AGCCTCTTCAGGATGCTATT+TGG - chr3_3:13957843-13957862 None:intergenic 45.0%
GGTGTCTCTGTAGCATTCAA+TGG - chr3_3:13957868-13957887 None:intergenic 45.0%
GAGACACCAGCTTTCCAAAT+TGG + chr3_3:13957880-13957899 Msa0443300:CDS 45.0%
CCTTAGCCAATTTGGAAAGC+TGG - chr3_3:13957889-13957908 None:intergenic 45.0%
CCAGCTTTCCAAATTGGCTA+AGG + chr3_3:13957886-13957905 Msa0443300:CDS 45.0%
! GTTCAGGTCCCTTGAAGTTT+TGG + chr3_3:13958079-13958098 Msa0443300:intron 45.0%
GGATGAACAATTGGGAGGAA+TGG + chr3_3:13958113-13958132 Msa0443300:intron 45.0%
!!! GAGGAATGGTTTTGTCTCGA+AGG + chr3_3:13958127-13958146 Msa0443300:intron 45.0%
!! GTTGGAAGCATCAATTCCCA+AGG + chr3_3:13958258-13958277 Msa0443300:CDS 45.0%
GGTTTGTCCTTCGTGGAAAT+CGG + chr3_3:13958356-13958375 Msa0443300:intron 45.0%
!! CAATGTACCGATTTCCACGA+AGG - chr3_3:13958366-13958385 None:intergenic 45.0%
CAAGTTTAGTGCAAAGGGGA+AGG - chr3_3:13958537-13958556 None:intergenic 45.0%
GTTGTTCAATTGTCCAGAGC+TGG + chr3_3:13958580-13958599 Msa0443300:CDS 45.0%
CTATGAAACGATTCCAGCTC+TGG - chr3_3:13958596-13958615 None:intergenic 45.0%
CAGAGCTGGAATCGTTTCAT+AGG + chr3_3:13958594-13958613 Msa0443300:CDS 45.0%
GAGCTGGAATCGTTTCATAG+GGG + chr3_3:13958596-13958615 Msa0443300:CDS 45.0%
AAATGTGGAGTCCTTCCCAT+AGG + chr3_3:13958747-13958766 Msa0443300:CDS 45.0%
!! GTCAAGCTTTGGATGGCAGA+AGG + chr3_3:13956881-13956900 Msa0443300:CDS 50.0%
! AACGCTGACTGATTTCGTCG+TGG + chr3_3:13957605-13957624 Msa0443300:CDS 50.0%
! ACGCTGACTGATTTCGTCGT+GGG + chr3_3:13957606-13957625 Msa0443300:CDS 50.0%
!! CGTGGGAAAGAATAGTGGGT+CGG + chr3_3:13957623-13957642 Msa0443300:CDS 50.0%
TGTTCCCATTTGCCACCACT+TGG + chr3_3:13957960-13957979 Msa0443300:CDS 50.0%
GTTCCCATTTGCCACCACTT+GGG + chr3_3:13957961-13957980 Msa0443300:CDS 50.0%
GTTTAGTGCAAAGGGGAAGG+AGG - chr3_3:13958534-13958553 None:intergenic 50.0%
CTGGAATCGTTTCATAGGGG+CGG + chr3_3:13958599-13958618 Msa0443300:CDS 50.0%
GTTTGCCTTCCAACTTGAGG+AGG + chr3_3:13958621-13958640 Msa0443300:CDS 50.0%
!! TCAAGCCTCCTCAAGTTGGA+AGG - chr3_3:13958629-13958648 None:intergenic 50.0%
TCTCATGAGCTAGCTCGGAG+AGG - chr3_3:13957356-13957375 None:intergenic 55.0%
TTTGCTTCTGCAGCATCCGC+AGG - chr3_3:13957723-13957742 None:intergenic 55.0%
CTGCCCAAGTGGTGGCAAAT+GGG - chr3_3:13957967-13957986 None:intergenic 55.0%
AGAGAAGGTAGCTGCCCAAG+TGG - chr3_3:13957978-13957997 None:intergenic 55.0%
TGGGCAGCTACCTTCTCTCA+AGG + chr3_3:13957980-13957999 Msa0443300:CDS 55.0%
TAGTGCAAAGGGGAAGGAGG+AGG - chr3_3:13958531-13958550 None:intergenic 55.0%
GCGGTTTGCCTTCCAACTTG+AGG + chr3_3:13958618-13958637 Msa0443300:CDS 55.0%
CAGCAGACTCTCCTATGGGA+AGG - chr3_3:13958761-13958780 None:intergenic 55.0%
GTGGCAGCAGACTCTCCTAT+GGG - chr3_3:13958765-13958784 None:intergenic 55.0%
AAACGGCGATGTGGGACCTT+AGG - chr3_3:13958799-13958818 None:intergenic 55.0%
GCTGCCCAAGTGGTGGCAAA+TGG - chr3_3:13957968-13957987 None:intergenic 60.0%
GAAGGTAGCTGCCCAAGTGG+TGG - chr3_3:13957975-13957994 None:intergenic 60.0%
GGTGGCAGCAGACTCTCCTA+TGG - chr3_3:13958766-13958785 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 13956136 13958820 13956136 ID=Msa0443300;Name=Msa0443300
chr3_3 mRNA 13956136 13958820 13956136 ID=Msa0443300-mRNA-1;Parent=Msa0443300;Name=Msa0443300-mRNA-1;_AED=0.40;_eAED=0.46;_QI=0|0|0|1|1|1|4|0|616
chr3_3 exon 13956136 13956236 13956136 ID=Msa0443300-mRNA-1:exon:3067;Parent=Msa0443300-mRNA-1
chr3_3 exon 13956873 13958062 13956873 ID=Msa0443300-mRNA-1:exon:3068;Parent=Msa0443300-mRNA-1
chr3_3 exon 13958149 13958327 13958149 ID=Msa0443300-mRNA-1:exon:3069;Parent=Msa0443300-mRNA-1
chr3_3 exon 13958440 13958820 13958440 ID=Msa0443300-mRNA-1:exon:3070;Parent=Msa0443300-mRNA-1
chr3_3 CDS 13956136 13956236 13956136 ID=Msa0443300-mRNA-1:cds;Parent=Msa0443300-mRNA-1
chr3_3 CDS 13956873 13958062 13956873 ID=Msa0443300-mRNA-1:cds;Parent=Msa0443300-mRNA-1
chr3_3 CDS 13958149 13958327 13958149 ID=Msa0443300-mRNA-1:cds;Parent=Msa0443300-mRNA-1
chr3_3 CDS 13958440 13958820 13958440 ID=Msa0443300-mRNA-1:cds;Parent=Msa0443300-mRNA-1
Gene Sequence

>Msa0443300

ATGCCTAATGATCATGGATCGAGGAAACTAGGAGCAGCAAGACAAAATGTTAACTTTCAGCCTGGAGCTCTCTGTTTTGAGATGCTCTGGCTTAGCTTTGAAACAGATTGTCAAGCTTTGGATGGCAGAAGGTTACTGAAGTGTTCAAGAAGAGACATAAGTGAAGAAAAGTTGGGTTATGAATTCTTCGATGACCTTGAGTCCATTTCATTTTTCCAACAATCTGTGAATTCACATTCTAGTGGTATGGTAATGCACGATCTTGTCAATGATTTAGCAAAATCAGTGTCAGGAGAATTTTGTTTTCTAATTGAGGGTGATATAGTGCAAGATATCCCTCAAAGAACACGTCACATTTGGTGCTCTCTTGATTCAAAAGATACTAGAAAAAATTTAGAGAATATTTGTAAGATTGAGTGTTTACGTGGTCTGATGGTACAACAAAAATTTTGGCAATATATGAAGAGGTATGAGACTTTTGGTCATATGATTTTAGGGCCAATTTCTAAATCCAATATTGTACAACGTGATCTGTATTCAAGACTAAAATATTTACGGATGATATCATTCAATGGATGTGACCTCTCCGAGCTAGCTCATGAGATAAGCAATTTGAAGCTTTTGCTCTATCTAGACTTGTCTTACACAGGGATAAAAAGGTTGCCTGAATCCATTTGTAATCTATATAATTTACAGACATTGATATTGAGAAGTTGTCCATTGACTGAGCTCCCTTTAGATTTTTTCAAACTTGTCAATTTACGTCATCTCTATCTGGAAGGAACTGACATGAAGATGATGCCAAAACAGATAGAGAGGCTAAACCATCTTCTAACGCTGACTGATTTCGTCGTGGGAAAGAATAGTGGGTCGGATATTAAGGAGTTGGGAAAATTGATTCATCTTCGAGGGAAACTTTGTATATCAGGGTTGGAAAATGTCATTAATCCTGCGGATGCTGCAGAAGCAAATTTGAAAGATAAGAAATATGTGGAAGAATTGTATATGAAATGGAGTTTCAAATTCAAAAACAATGGAAGAGAATTGGATGTTTTTGAGGCTCTTCAACCAAATAGCATCCTGAAGAGGCTAACCATTGAATGCTACAGAGACACCAGCTTTCCAAATTGGCTAAGGGCTTGTAATTTACCCAACTTAATATCTCTTAAACTGTATTGGTGTGGATCATGTTCCCATTTGCCACCACTTGGGCAGCTACCTTCTCTCAAGGAGCTTTCTATTTCAGACTGTAACGGAATAAAGATCATCAGCGAAGAGTTTTATGGAAATAGGTTTCCTTTGCTTAAAGAGCTTTCCATAAAGAGTTGTCCCAAATTGAAAACGGCTTTGCCTCAACTCCTTCCTTCTTTACAAAAATTGGAGATTAGTAATTGTGAATGGTTGGAAGCATCAATTCCCAAGGTTGATAATATCAGAGACTTAGAGCTAGTAGGATGTGATAAAATTTTGTTGGATGTAAGTGGCTTTAAAGAATTGCCCTCTTTGGATTTGCGCTGTTATGATTCTCTTCGCAAACTTTATATAGAAGGCTGGCTCTCCTCCTCCTTCCCCTTTGCACTAAACTTGTTCATCAATCTTCATTCTCTCAGGTTGTTCAATTGTCCAGAGCTGGAATCGTTTCATAGGGGCGGTTTGCCTTCCAACTTGAGGAGGCTTGAAATATTCAACTGTCCAAAACTAATTGCTTCAAGAGAGGATTGGGGTTTGTTCCAACTCAATTCTCTGATAGAGAGTTTAGAGTTAGCGATGACTTTGAAAATGTGGAGTCCTTCCCATAGGAGAGTCTGCTGCCACCAAATTTTTGACCTAAGGTCCCACATCGCCGTTTGA
Protein sequence

>Msa0443300

MPNDHGSRKLGAARQNVNFQPGALCFEMLWLSFETDCQALDGRRLLKCSRRDISEEKLGYEFFDDLESISFFQQSVNSHSSGMVMHDLVNDLAKSVSGEFCFLIEGDIVQDIPQRTRHIWCSLDSKDTRKNLENICKIECLRGLMVQQKFWQYMKRYETFGHMILGPISKSNIVQRDLYSRLKYLRMISFNGCDLSELAHEISNLKLLLYLDLSYTGIKRLPESICNLYNLQTLILRSCPLTELPLDFFKLVNLRHLYLEGTDMKMMPKQIERLNHLLTLTDFVVGKNSGSDIKELGKLIHLRGKLCISGLENVINPADAAEANLKDKKYVEELYMKWSFKFKNNGRELDVFEALQPNSILKRLTIECYRDTSFPNWLRACNLPNLISLKLYWCGSCSHLPPLGQLPSLKELSISDCNGIKIISEEFYGNRFPLLKELSIKSCPKLKTALPQLLPSLQKLEISNCEWLEASIPKVDNIRDLELVGCDKILLDVSGFKELPSLDLRCYDSLRKLYIEGWLSSSFPFALNLFINLHSLRLFNCPELESFHRGGLPSNLRRLEIFNCPKLIASREDWGLFQLNSLIESLELAMTLKMWSPSHRRVCCHQIFDLRSHIAV*