AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0124340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124340 MtrunA17_Chr1g0185261 80.952 210 20 3 1 207 1 193 1.74e-101 296
Msa0124340 MtrunA17_Chr5g0445881 34.601 263 96 6 16 205 61 320 1.21e-19 89.0
Msa0124340 MtrunA17_Chr5g0446181 39.216 204 90 8 16 203 79 264 1.83e-17 82.0
Msa0124340 MtrunA17_Chr5g0445961 39.735 151 61 3 65 185 255 405 5.13e-17 81.6
Msa0124340 MtrunA17_Chr5g0445861 47.899 119 48 2 70 174 240 358 4.73e-16 78.2
Msa0124340 MtrunA17_Chr5g0445831 36.979 192 77 5 16 166 57 245 5.50e-14 72.0
Msa0124340 MtrunA17_Chr1g0185271 72.093 43 12 0 271 313 123 165 4.65e-13 66.2
Msa0124340 MtrunA17_Chr5g0445771 46.154 91 44 1 102 187 217 307 1.31e-12 68.2
Msa0124340 MtrunA17_Chr5g0445771 46.535 101 47 2 16 116 76 169 4.97e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 90 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATCTTTCTTGAGCTATTT+TGG 0.110071 1_3:+52052005 None:intergenic
CTCTCATTAATTATCTAAAA+TGG 0.188495 1_3:+52049456 None:intergenic
CTTGAAAGATGTTATCAAAA+TGG 0.217383 1_3:+52052196 None:intergenic
GGGTTTGCCCTCTTCCTTGC+AGG 0.223135 1_3:-52051515 Msa0124340:CDS
CAGACTAGAGGAGCTTTCTT+TGG 0.257434 1_3:-52052094 Msa0124340:CDS
TTCAAAGAACTCAAAATAAT+TGG 0.260116 1_3:-52051973 Msa0124340:CDS
GTACAAATTTGTCCTCATTT+TGG 0.267038 1_3:-52052277 Msa0124340:five_prime_UTR
AAAATAATTGGCTCAACTTA+TGG 0.294742 1_3:-52051961 Msa0124340:CDS
ATTTGTGATCATATTGATAA+AGG 0.297643 1_3:-52050904 Msa0124340:intron
AACAAAGAATGTTGAATTAG+AGG 0.303948 1_3:-52051815 Msa0124340:CDS
GGAAACTGTGAAGAATAATT+TGG 0.319782 1_3:-52051794 Msa0124340:CDS
TGATCCTATGGTTGCTGCTT+TGG 0.320404 1_3:-52051593 Msa0124340:CDS
AGTCTGTGGACACGAAGTTC+AGG 0.338708 1_3:-52051699 Msa0124340:CDS
GATTTGTGCTTAGTTGGATT+TGG 0.355919 1_3:+52052225 None:intergenic
TTGAAAGATGTTATCAAAAT+GGG 0.368916 1_3:+52052197 None:intergenic
TGAGTTCTTTGAAGAGATCT+TGG 0.373162 1_3:+52051983 None:intergenic
TGAGAAGGATTTGGTCTAGT+TGG 0.400907 1_3:-52049512 Msa0124340:three_prime_UTR
TCCATTCACAGACTTTGAAA+TGG 0.406297 1_3:-52052151 Msa0124340:exon
ATAAAGCAGAAAAGAGGAAA+AGG 0.411906 1_3:-52049702 Msa0124340:CDS
GGGAGCTTGGTCAAGCAAGC+AGG 0.419342 1_3:-52049681 Msa0124340:CDS
TTTCTTTGTTAAAAGTTCAA+TGG 0.428054 1_3:+52051933 None:intergenic
TTGTTGTACTGAGAAGGATT+TGG 0.435033 1_3:-52049521 Msa0124340:three_prime_UTR
AAAACCAAGGTTTCATAGCT+TGG 0.435752 1_3:+52050955 None:intergenic
GAGAGATTGATATACATGTA+TGG 0.441835 1_3:-52049438 Msa0124340:three_prime_UTR
AAGTGAAGCGGCCCTTCAAA+TGG 0.442528 1_3:+52052120 None:intergenic
CAGGGTGAGTCTTCATCTCT+AGG 0.449735 1_3:-52051496 Msa0124340:intron
AGAGACAATGGAGTTTGCTC+TGG 0.451514 1_3:-52049622 Msa0124340:CDS
ATGGAGATACTTCCATTTGA+AGG 0.456578 1_3:-52052132 Msa0124340:CDS
AGCTTGGTCAAGCAAGCAGG+GGG 0.463399 1_3:-52049678 Msa0124340:CDS
GGTTTGCCCTCTTCCTTGCA+GGG 0.464648 1_3:-52051514 Msa0124340:CDS
GAGGTATATACCTCCTATCT+TGG 0.467846 1_3:-52050609 Msa0124340:CDS
TCCATTTCAAAGTCTGTGAA+TGG 0.474011 1_3:+52052150 None:intergenic
GTATAAAGGTGGTACTATGA+TGG 0.480771 1_3:-52049558 Msa0124340:three_prime_UTR
GGAGCTTGGTCAAGCAAGCA+GGG 0.482799 1_3:-52049680 Msa0124340:CDS
GAGCTTGGTCAAGCAAGCAG+GGG 0.482943 1_3:-52049679 Msa0124340:CDS
AGAGTTCGCTAAAAGAGAAA+AGG 0.488955 1_3:-52052043 Msa0124340:CDS
ATCTACACTCATCAAACGTT+CGG 0.489204 1_3:+52051639 None:intergenic
CACTTGCTGAAGGCCAAGAT+AGG 0.496834 1_3:+52050596 None:intergenic
CTTGGTCAAGCAAGCAGGGG+GGG 0.501057 1_3:-52049676 Msa0124340:CDS
TAAAGCAGAAAAGAGGAAAA+GGG 0.510608 1_3:-52049701 Msa0124340:CDS
AAAAGACTGTTGAGAGACAA+TGG 0.513339 1_3:-52049634 Msa0124340:CDS
GTCAAGAAATTGAAGGGTGT+TGG 0.517668 1_3:-52051889 Msa0124340:CDS
GAAAAGAGGAAAAGGGAGCT+TGG 0.519790 1_3:-52049694 Msa0124340:CDS
GAACTCTGACTCAACATGTA+TGG 0.529103 1_3:+52052059 None:intergenic
TTCAGAAATGACACTGTTGA+GGG 0.532625 1_3:-52051535 Msa0124340:CDS
GGAGCCTGATGTTGATCCTA+TGG 0.533780 1_3:-52051605 Msa0124340:CDS
GTCTGTGGACACGAAGTTCA+GGG 0.534295 1_3:-52051698 Msa0124340:CDS
GCATGAAAGAGTAGCGAGGT+TGG 0.539040 1_3:-52051671 Msa0124340:CDS
ACAACGTTAATCAGATAGAC+AGG 0.541818 1_3:+52049366 None:intergenic
AGACTCACCCTGCAAGGAAG+AGG 0.544147 1_3:+52051507 None:intergenic
AGAGATTGATATACATGTAT+GGG 0.545148 1_3:-52049437 Msa0124340:three_prime_UTR
ACTCAACATGTATGGTTGAA+AGG 0.549288 1_3:+52052067 None:intergenic
GCTTGGTCAAGCAAGCAGGG+GGG 0.556517 1_3:-52049677 Msa0124340:CDS
TCATCCAAGCTATGAAACCT+TGG 0.559979 1_3:-52050959 Msa0124340:CDS
GGTTCAAGTCAAGAAATTGA+AGG 0.561506 1_3:-52051896 Msa0124340:CDS
GATGGTAGTAGCTATGACTA+CGG 0.562172 1_3:-52051859 Msa0124340:CDS
TGGAGATACTTCCATTTGAA+GGG 0.564385 1_3:-52052131 Msa0124340:CDS
ATATTCAAATCAACAAGTAA+AGG 0.566444 1_3:+52050925 None:intergenic
AAATCTATAAAGCAGAAAAG+AGG 0.570733 1_3:-52049708 Msa0124340:CDS
GCAACCATAGGATCAACATC+AGG 0.571760 1_3:+52051601 None:intergenic
GAGGAAAGAAAACAGCAGAC+TGG 0.571956 1_3:-52051755 Msa0124340:CDS
TGAGAAATTGCTCAAGTCTG+TGG 0.574071 1_3:-52051713 Msa0124340:CDS
AAGGGTGTTGGTGATGATGA+TGG 0.576641 1_3:-52051877 Msa0124340:CDS
GACTGGAAGATGAGAAACGC+GGG 0.577244 1_3:-52051738 Msa0124340:CDS
GTTCAGAAATGACACTGTTG+AGG 0.583108 1_3:-52051536 Msa0124340:CDS
AGATGAAGACTCACCCTGCA+AGG 0.586923 1_3:+52051501 None:intergenic
TTTCAAAGTCTGTGAATGGA+AGG 0.589355 1_3:+52052154 None:intergenic
TCTTCCAAAGCAGCAACCAT+AGG 0.593395 1_3:+52051589 None:intergenic
GACTCACCCTGCAAGGAAGA+GGG 0.593625 1_3:+52051508 None:intergenic
TTGCTGAAGGCCAAGATAGG+AGG 0.598259 1_3:+52050599 None:intergenic
ATACATGTATGGGCTTCTGA+AGG 0.607793 1_3:-52049427 Msa0124340:three_prime_UTR
CAAAGTCTGTGAATGGAAGG+TGG 0.611681 1_3:+52052157 None:intergenic
GTTCAAGTCAAGAAATTGAA+GGG 0.613693 1_3:-52051895 Msa0124340:CDS
GCTTCACTTTGACAGACTAG+AGG 0.616458 1_3:-52052106 Msa0124340:CDS
ATGGGCTTCTGAAGGTCTTG+CGG 0.616569 1_3:-52049419 Msa0124340:three_prime_UTR
TCTAGTCTGTCAAAGTGAAG+CGG 0.619726 1_3:+52052108 None:intergenic
TCTTGCATTACACTTGCTGA+AGG 0.621617 1_3:+52050586 None:intergenic
ACTGCTTCACTACCAAAATG+AGG 0.622300 1_3:+52052265 None:intergenic
TGAAAGAGTAGCGAGGTTGG+AGG 0.624900 1_3:-52051668 Msa0124340:CDS
ATGAGTGTAGATGACTCTGA+AGG 0.643207 1_3:-52051628 Msa0124340:CDS
TTTGGAAGATGAAGATGAAG+AGG 0.644693 1_3:-52051575 Msa0124340:CDS
TCTGTGGACACGAAGTTCAG+GGG 0.655793 1_3:-52051697 Msa0124340:CDS
TAAAGGAACTAGCAAAACCA+AGG 0.668972 1_3:+52050942 None:intergenic
TGAGTGTAGATGACTCTGAA+GGG 0.681333 1_3:-52051627 Msa0124340:CDS
AAAGTCTTAACACTACAATG+TGG 0.692284 1_3:-52050990 Msa0124340:CDS
TGGCAACTATAAGCGAGCTG+AGG 0.694355 1_3:-52051774 Msa0124340:CDS
GAGTGTAGATGACTCTGAAG+GGG 0.702524 1_3:-52051626 Msa0124340:CDS
GACTGCATGAAAGAGTAGCG+AGG 0.721557 1_3:-52051675 Msa0124340:CDS
AGACTGGAAGATGAGAAACG+CGG 0.732644 1_3:-52051739 Msa0124340:CDS
ACTGGAAGATGAGAAACGCG+GGG 0.734127 1_3:-52051737 Msa0124340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATGTTTAATATTTATTTTT+TGG + chr1_3:52051453-52051472 None:intergenic 10.0%
!! AAATAAATATTAAACATCAT+AGG - chr1_3:52051455-52051474 Msa0124340:intron 10.0%
!! AGTGATAACAAATAATATTA+TGG - chr1_3:52050908-52050927 Msa0124340:CDS 15.0%
!!! GGTATTTTTTTTTTTTTTAG+AGG - chr1_3:52051476-52051495 Msa0124340:intron 15.0%
!!! ATCTACTATATTTTGTATAA+AGG - chr1_3:52052058-52052077 Msa0124340:CDS 15.0%
!! TTGAAAGATGTTATCAAAAT+GGG + chr1_3:52049436-52049455 None:intergenic 20.0%
!! TTCAAAGAACTCAAAATAAT+TGG - chr1_3:52049657-52049676 Msa0124340:CDS 20.0%
!! TTTCTTTGTTAAAAGTTCAA+TGG + chr1_3:52049700-52049719 None:intergenic 20.0%
!!! TAAGCTCATTTGATTTAAAA+AGG - chr1_3:52050273-52050292 Msa0124340:intron 20.0%
!! ATATTCAAATCAACAAGTAA+AGG + chr1_3:52050708-52050727 None:intergenic 20.0%
!! ATTTGTGATCATATTGATAA+AGG - chr1_3:52050726-52050745 Msa0124340:intron 20.0%
!! TCATATTGATAAAGGTAAAT+TGG - chr1_3:52050734-52050753 Msa0124340:intron 20.0%
!! CATATTGATAAAGGTAAATT+GGG - chr1_3:52050735-52050754 Msa0124340:intron 20.0%
!! TAATCACTACATATTTAAAC+TGG + chr1_3:52050816-52050835 None:intergenic 20.0%
!! ACAAATTAAGTCATACAATA+TGG + chr1_3:52051750-52051769 None:intergenic 20.0%
!!! TACTATATTTTGTATAAAGG+TGG - chr1_3:52052061-52052080 Msa0124340:CDS 20.0%
!! CTCTCATTAATTATCTAAAA+TGG + chr1_3:52052177-52052196 None:intergenic 20.0%
! CTTGAAAGATGTTATCAAAA+TGG + chr1_3:52049437-52049456 None:intergenic 25.0%
!! AAAATAATTGGCTCAACTTA+TGG - chr1_3:52049669-52049688 Msa0124340:CDS 25.0%
! AAAGAAAAACAATGAATTGC+AGG - chr1_3:52049713-52049732 Msa0124340:CDS 25.0%
! AACAAAGAATGTTGAATTAG+AGG - chr1_3:52049815-52049834 Msa0124340:intron 25.0%
! TGATTTAAAAAGGACTCATT+TGG - chr1_3:52050283-52050302 Msa0124340:intron 25.0%
!! TTTTTCCAATTAAGACTGTA+GGG + chr1_3:52050418-52050437 None:intergenic 25.0%
!!! TTTTTTCCAATTAAGACTGT+AGG + chr1_3:52050419-52050438 None:intergenic 25.0%
! TCTAACACTACAAATTCAAT+CGG - chr1_3:52050515-52050534 Msa0124340:intron 25.0%
! GTAAATTGGGTTACATATAA+GGG - chr1_3:52050748-52050767 Msa0124340:intron 25.0%
! AGGTTTATAACTTGATAAAG+TGG - chr1_3:52050776-52050795 Msa0124340:intron 25.0%
! ATATGATAGAATAGAAGTTC+TGG - chr1_3:52050865-52050884 Msa0124340:intron 25.0%
!! GTTATCACTCAATTAACTTT+TGG + chr1_3:52050897-52050916 None:intergenic 25.0%
! AATTGACTGTACATTTGAAT+TGG + chr1_3:52051144-52051163 None:intergenic 25.0%
! TGTTGTTAGCATATTATTAG+AGG - chr1_3:52051507-52051526 Msa0124340:CDS 25.0%
!!! TATCTTGCTATTAAGTGATA+TGG - chr1_3:52051629-52051648 Msa0124340:CDS 25.0%
! AGTATGAAGCTGTAATAATA+TGG + chr1_3:52051806-52051825 None:intergenic 25.0%
! AAATCTATAAAGCAGAAAAG+AGG - chr1_3:52051922-52051941 Msa0124340:CDS 25.0%
! AGAGATTGATATACATGTAT+GGG - chr1_3:52052193-52052212 Msa0124340:five_prime_UTR 25.0%
! GTACAAATTTGTCCTCATTT+TGG - chr1_3:52049353-52049372 Msa0124340:three_prime_UTR 30.0%
! GTATCTTTCTTGAGCTATTT+TGG + chr1_3:52049628-52049647 None:intergenic 30.0%
GTTCAAGTCAAGAAATTGAA+GGG - chr1_3:52049735-52049754 Msa0124340:intron 30.0%
GGAAACTGTGAAGAATAATT+TGG - chr1_3:52049836-52049855 Msa0124340:intron 30.0%
AAAAAGGACTCATTTGGTAA+TGG - chr1_3:52050289-52050308 Msa0124340:intron 30.0%
! GCTTTAAGTTATTAGCTACT+TGG + chr1_3:52050363-52050382 None:intergenic 30.0%
! TAAGACTTTTATGCTCTGTT+TGG + chr1_3:52050629-52050648 None:intergenic 30.0%
AAAGTCTTAACACTACAATG+TGG - chr1_3:52050640-52050659 Msa0124340:intron 30.0%
GGTAAATTGGGTTACATATA+AGG - chr1_3:52050747-52050766 Msa0124340:intron 30.0%
! CTTCAAGAACATTTTGTGAA+TGG - chr1_3:52050836-52050855 Msa0124340:intron 30.0%
!! TGTTTTAGATTCAGTTGTTG+AGG - chr1_3:52051002-52051021 Msa0124340:intron 30.0%
TTCATTGCATAACACATCAT+AGG - chr1_3:52051295-52051314 Msa0124340:intron 30.0%
ACATCATAGGTATTATCGTT+CGG - chr1_3:52051308-52051327 Msa0124340:intron 30.0%
! ATGTGGAACAGTTTTTGATA+AGG - chr1_3:52051351-52051370 Msa0124340:intron 30.0%
TTAGCATATTATTAGAGGAG+AGG - chr1_3:52051512-52051531 Msa0124340:CDS 30.0%
TAGCATATTATTAGAGGAGA+GGG - chr1_3:52051513-52051532 Msa0124340:CDS 30.0%
ACAAGTAAATAAGCACCATA+AGG + chr1_3:52051878-52051897 None:intergenic 30.0%
ATAAAGCAGAAAAGAGGAAA+AGG - chr1_3:52051928-52051947 Msa0124340:CDS 30.0%
TAAAGCAGAAAAGAGGAAAA+GGG - chr1_3:52051929-52051948 Msa0124340:CDS 30.0%
GAGAGATTGATATACATGTA+TGG - chr1_3:52052192-52052211 Msa0124340:five_prime_UTR 30.0%
GATTTGTGCTTAGTTGGATT+TGG + chr1_3:52049408-52049427 None:intergenic 35.0%
!! GTTTTCGATTTGTGCTTAGT+TGG + chr1_3:52049414-52049433 None:intergenic 35.0%
TTTCAAAGTCTGTGAATGGA+AGG + chr1_3:52049479-52049498 None:intergenic 35.0%
! TCCATTCACAGACTTTGAAA+TGG - chr1_3:52049479-52049498 Msa0124340:three_prime_UTR 35.0%
TCCATTTCAAAGTCTGTGAA+TGG + chr1_3:52049483-52049502 None:intergenic 35.0%
ATGGAGATACTTCCATTTGA+AGG - chr1_3:52049498-52049517 Msa0124340:three_prime_UTR 35.0%
TGGAGATACTTCCATTTGAA+GGG - chr1_3:52049499-52049518 Msa0124340:three_prime_UTR 35.0%
ACTCAACATGTATGGTTGAA+AGG + chr1_3:52049566-52049585 None:intergenic 35.0%
AGAGTTCGCTAAAAGAGAAA+AGG - chr1_3:52049587-52049606 Msa0124340:three_prime_UTR 35.0%
! TGAGTTCTTTGAAGAGATCT+TGG + chr1_3:52049650-52049669 None:intergenic 35.0%
GGTTCAAGTCAAGAAATTGA+AGG - chr1_3:52049734-52049753 Msa0124340:intron 35.0%
ATCTACACTCATCAAACGTT+CGG + chr1_3:52049994-52050013 None:intergenic 35.0%
TTTGGAAGATGAAGATGAAG+AGG - chr1_3:52050055-52050074 Msa0124340:intron 35.0%
TTCAGAAATGACACTGTTGA+GGG - chr1_3:52050095-52050114 Msa0124340:intron 35.0%
CACAACACATACTAATTGTG+GGG + chr1_3:52050192-52050211 None:intergenic 35.0%
CCACAACACATACTAATTGT+GGG + chr1_3:52050193-52050212 None:intergenic 35.0%
CCACAATTAGTATGTGTTGT+GGG - chr1_3:52050191-52050210 Msa0124340:intron 35.0%
TGTTGTGGGTCTACTTAATA+AGG - chr1_3:52050205-52050224 Msa0124340:intron 35.0%
GTTGTGGGTCTACTTAATAA+GGG - chr1_3:52050206-52050225 Msa0124340:intron 35.0%
CTACTTAATAAGGGTCTGTT+TGG - chr1_3:52050215-52050234 Msa0124340:intron 35.0%
TTTAGCCCTACAGTCTTAAT+TGG - chr1_3:52050410-52050429 Msa0124340:intron 35.0%
!!! GCTGATAAGTTAGCTTTTAG+TGG + chr1_3:52050550-52050569 None:intergenic 35.0%
GCAGATAAGCTAACTTATAG+CGG + chr1_3:52050590-52050609 None:intergenic 35.0%
AAAACCAAGGTTTCATAGCT+TGG + chr1_3:52050678-52050697 None:intergenic 35.0%
TAAAGGAACTAGCAAAACCA+AGG + chr1_3:52050691-52050710 None:intergenic 35.0%
AATTGGGTTACATATAAGGG+TGG - chr1_3:52050751-52050770 Msa0124340:intron 35.0%
ATTGGGTTACATATAAGGGT+GGG - chr1_3:52050752-52050771 Msa0124340:intron 35.0%
GAAATTGCACAGTTTGATGA+TGG - chr1_3:52050935-52050954 Msa0124340:CDS 35.0%
ATCACAATACACCAAGAACA+AGG + chr1_3:52050979-52050998 None:intergenic 35.0%
CCTTTGAATGTACTCTGATT+AGG + chr1_3:52051116-52051135 None:intergenic 35.0%
CCTAATCAGAGTACATTCAA+AGG - chr1_3:52051113-52051132 Msa0124340:intron 35.0%
TTCCACATAGAAATCGAACT+CGG + chr1_3:52051339-52051358 None:intergenic 35.0%
TGACCGAACTCTAGATTATT+AGG - chr1_3:52051396-52051415 Msa0124340:intron 35.0%
! GGTCCTAATAATCTAGAGTT+CGG + chr1_3:52051402-52051421 None:intergenic 35.0%
AGCATATTATTAGAGGAGAG+GGG - chr1_3:52051514-52051533 Msa0124340:CDS 35.0%
GTCCCAATCCTTTAATCATT+GGG - chr1_3:52051579-52051598 Msa0124340:CDS 35.0%
AGCCCAATGATTAAAGGATT+GGG + chr1_3:52051584-52051603 None:intergenic 35.0%
TAGCCCAATGATTAAAGGAT+TGG + chr1_3:52051585-52051604 None:intergenic 35.0%
TCATTAATGCCATTGCCTTA+TGG - chr1_3:52051860-52051879 Msa0124340:CDS 35.0%
AAATAAGCACCATAAGGCAA+TGG + chr1_3:52051872-52051891 None:intergenic 35.0%
TTAATGAACTTCATGTCTGC+AGG - chr1_3:52051898-52051917 Msa0124340:CDS 35.0%
AAAAGACTGTTGAGAGACAA+TGG - chr1_3:52051996-52052015 Msa0124340:CDS 35.0%
!!! GTTTTGATTCTTGAAATGCG+AGG - chr1_3:52052030-52052049 Msa0124340:CDS 35.0%
GTATAAAGGTGGTACTATGA+TGG - chr1_3:52052072-52052091 Msa0124340:CDS 35.0%
!! GTCATTTTGTTGTACTGAGA+AGG - chr1_3:52052103-52052122 Msa0124340:CDS 35.0%
TTGTTGTACTGAGAAGGATT+TGG - chr1_3:52052109-52052128 Msa0124340:CDS 35.0%
ACAACGTTAATCAGATAGAC+AGG + chr1_3:52052267-52052286 None:intergenic 35.0%
ACTGCTTCACTACCAAAATG+AGG + chr1_3:52049368-52049387 None:intergenic 40.0%
GGAAGGTGGAAGTGAAAAAA+GGG + chr1_3:52049462-52049481 None:intergenic 40.0%
TGGAAGGTGGAAGTGAAAAA+AGG + chr1_3:52049463-52049482 None:intergenic 40.0%
TCTAGTCTGTCAAAGTGAAG+CGG + chr1_3:52049525-52049544 None:intergenic 40.0%
GAACTCTGACTCAACATGTA+TGG + chr1_3:52049574-52049593 None:intergenic 40.0%
! GTCAAGAAATTGAAGGGTGT+TGG - chr1_3:52049741-52049760 Msa0124340:intron 40.0%
GATGGTAGTAGCTATGACTA+CGG - chr1_3:52049771-52049790 Msa0124340:intron 40.0%
TGAGAAATTGCTCAAGTCTG+TGG - chr1_3:52049917-52049936 Msa0124340:intron 40.0%
ATGAGTGTAGATGACTCTGA+AGG - chr1_3:52050002-52050021 Msa0124340:intron 40.0%
TGAGTGTAGATGACTCTGAA+GGG - chr1_3:52050003-52050022 Msa0124340:intron 40.0%
GTTCAGAAATGACACTGTTG+AGG - chr1_3:52050094-52050113 Msa0124340:intron 40.0%
CCCACAATTAGTATGTGTTG+TGG - chr1_3:52050190-52050209 Msa0124340:intron 40.0%
CCCACAACACATACTAATTG+TGG + chr1_3:52050194-52050213 None:intergenic 40.0%
TCATCCAAGCTATGAAACCT+TGG - chr1_3:52050671-52050690 Msa0124340:intron 40.0%
!! AGTTTGATGATGGCCTATTG+TGG - chr1_3:52050945-52050964 Msa0124340:CDS 40.0%
CAAGGAATCACTTCCACAAT+AGG + chr1_3:52050961-52050980 None:intergenic 40.0%
TGGAAGTGATTCCTTGTTCT+TGG - chr1_3:52050965-52050984 Msa0124340:CDS 40.0%
GAGGTATATACCTCCTATCT+TGG - chr1_3:52051021-52051040 Msa0124340:intron 40.0%
! TCTTGCATTACACTTGCTGA+AGG + chr1_3:52051047-52051066 None:intergenic 40.0%
TCAGCAAGTGTAATGCAAGA+TGG - chr1_3:52051047-52051066 Msa0124340:intron 40.0%
CACAACTGTATAGCACGATA+AGG + chr1_3:52051075-52051094 None:intergenic 40.0%
CTTATCGTGCTATACAGTTG+TGG - chr1_3:52051073-52051092 Msa0124340:intron 40.0%
TCCACATAGAAATCGAACTC+GGG + chr1_3:52051338-52051357 None:intergenic 40.0%
! TAATCTAGAGTTCGGTCAAG+AGG + chr1_3:52051394-52051413 None:intergenic 40.0%
CGTCCCAATCCTTTAATCAT+TGG - chr1_3:52051578-52051597 Msa0124340:CDS 40.0%
AGGTGTAGCCCAATGATTAA+AGG + chr1_3:52051590-52051609 None:intergenic 40.0%
TAATCATTGGGCTACACCTT+CGG - chr1_3:52051591-52051610 Msa0124340:CDS 40.0%
AATATACTTATGACGCCCGA+AGG + chr1_3:52051610-52051629 None:intergenic 40.0%
CTTTCCTTGACACAAAGCTT+TGG + chr1_3:52051676-52051695 None:intergenic 40.0%
! TGAGAAGGATTTGGTCTAGT+TGG - chr1_3:52052118-52052137 Msa0124340:CDS 40.0%
ATACATGTATGGGCTTCTGA+AGG - chr1_3:52052203-52052222 Msa0124340:five_prime_UTR 40.0%
CAAAGTCTGTGAATGGAAGG+TGG + chr1_3:52049476-52049495 None:intergenic 45.0%
GCTTCACTTTGACAGACTAG+AGG - chr1_3:52049524-52049543 Msa0124340:three_prime_UTR 45.0%
CAGACTAGAGGAGCTTTCTT+TGG - chr1_3:52049536-52049555 Msa0124340:three_prime_UTR 45.0%
!! AAGGGTGTTGGTGATGATGA+TGG - chr1_3:52049753-52049772 Msa0124340:intron 45.0%
GAGGAAAGAAAACAGCAGAC+TGG - chr1_3:52049875-52049894 Msa0124340:intron 45.0%
AGACTGGAAGATGAGAAACG+CGG - chr1_3:52049891-52049910 Msa0124340:intron 45.0%
! GAGTGTAGATGACTCTGAAG+GGG - chr1_3:52050004-52050023 Msa0124340:intron 45.0%
GCAACCATAGGATCAACATC+AGG + chr1_3:52050032-52050051 None:intergenic 45.0%
! TGATCCTATGGTTGCTGCTT+TGG - chr1_3:52050037-52050056 Msa0124340:intron 45.0%
TCTTCCAAAGCAGCAACCAT+AGG + chr1_3:52050044-52050063 None:intergenic 45.0%
GTGAGTCTTCATCTCTAGGT+AGG - chr1_3:52050138-52050157 Msa0124340:intron 45.0%
TCTCTAGGTAGGTTGTGCTT+AGG - chr1_3:52050149-52050168 Msa0124340:intron 45.0%
GGTTACATATAAGGGTGGGT+AGG - chr1_3:52050756-52050775 Msa0124340:intron 45.0%
ACCCGAGTTCGATTTCTATG+TGG - chr1_3:52051334-52051353 Msa0124340:intron 45.0%
TGCTAACTCTCCGATTTCCA+GGG + chr1_3:52051430-52051449 None:intergenic 45.0%
AGGAGAGGGGAAAATGTTAG+CGG - chr1_3:52051527-52051546 Msa0124340:CDS 45.0%
AAGGATTGGGACGTTGAATG+AGG + chr1_3:52051571-52051590 None:intergenic 45.0%
AATCATTGGGCTACACCTTC+GGG - chr1_3:52051592-52051611 Msa0124340:CDS 45.0%
! AAAGCTTTGGCTGAACCCAA+GGG + chr1_3:52051663-52051682 None:intergenic 45.0%
! TCAGCCAAAGCTTTGTGTCA+AGG - chr1_3:52051669-52051688 Msa0124340:CDS 45.0%
GAAAAGAGGAAAAGGGAGCT+TGG - chr1_3:52051936-52051955 Msa0124340:CDS 45.0%
! AGAGACAATGGAGTTTGCTC+TGG - chr1_3:52052008-52052027 Msa0124340:CDS 45.0%
AAGTGAAGCGGCCCTTCAAA+TGG + chr1_3:52049513-52049532 None:intergenic 50.0%
TGGCAACTATAAGCGAGCTG+AGG - chr1_3:52049856-52049875 Msa0124340:intron 50.0%
GACTGGAAGATGAGAAACGC+GGG - chr1_3:52049892-52049911 Msa0124340:intron 50.0%
ACTGGAAGATGAGAAACGCG+GGG - chr1_3:52049893-52049912 Msa0124340:intron 50.0%
AGTCTGTGGACACGAAGTTC+AGG - chr1_3:52049931-52049950 Msa0124340:intron 50.0%
GTCTGTGGACACGAAGTTCA+GGG - chr1_3:52049932-52049951 Msa0124340:intron 50.0%
TCTGTGGACACGAAGTTCAG+GGG - chr1_3:52049933-52049952 Msa0124340:intron 50.0%
GACTGCATGAAAGAGTAGCG+AGG - chr1_3:52049955-52049974 Msa0124340:intron 50.0%
GCATGAAAGAGTAGCGAGGT+TGG - chr1_3:52049959-52049978 Msa0124340:intron 50.0%
TGAAAGAGTAGCGAGGTTGG+AGG - chr1_3:52049962-52049981 Msa0124340:intron 50.0%
GGAGCCTGATGTTGATCCTA+TGG - chr1_3:52050025-52050044 Msa0124340:intron 50.0%
AGATGAAGACTCACCCTGCA+AGG + chr1_3:52050132-52050151 None:intergenic 50.0%
CAGGGTGAGTCTTCATCTCT+AGG - chr1_3:52050134-52050153 Msa0124340:intron 50.0%
TTGCTGAAGGCCAAGATAGG+AGG + chr1_3:52051034-52051053 None:intergenic 50.0%
! CACTTGCTGAAGGCCAAGAT+AGG + chr1_3:52051037-52051056 None:intergenic 50.0%
ATTATTAGGACCCCTTCCCC+TGG - chr1_3:52051410-52051429 Msa0124340:intron 50.0%
GCTAACTCTCCGATTTCCAG+GGG + chr1_3:52051429-52051448 None:intergenic 50.0%
GTGCTAACTCTCCGATTTCC+AGG + chr1_3:52051431-52051450 None:intergenic 50.0%
GGGACGTTGAATGAGGTTCA+AGG + chr1_3:52051564-52051583 None:intergenic 50.0%
TGATATGGCCTCATGTCCCT+TGG - chr1_3:52051644-52051663 Msa0124340:CDS 50.0%
GATATGGCCTCATGTCCCTT+GGG - chr1_3:52051645-52051664 Msa0124340:CDS 50.0%
! CAAAGCTTTGGCTGAACCCA+AGG + chr1_3:52051664-52051683 None:intergenic 50.0%
! ATGGGCTTCTGAAGGTCTTG+CGG - chr1_3:52052211-52052230 Msa0124340:five_prime_UTR 50.0%
GGTTTGCCCTCTTCCTTGCA+GGG - chr1_3:52050116-52050135 Msa0124340:intron 55.0%
GACTCACCCTGCAAGGAAGA+GGG + chr1_3:52050125-52050144 None:intergenic 55.0%
AGACTCACCCTGCAAGGAAG+AGG + chr1_3:52050126-52050145 None:intergenic 55.0%
TCTCCGATTTCCAGGGGAAG+GGG + chr1_3:52051423-52051442 None:intergenic 55.0%
CTCTCCGATTTCCAGGGGAA+GGG + chr1_3:52051424-52051443 None:intergenic 55.0%
ACTCTCCGATTTCCAGGGGA+AGG + chr1_3:52051425-52051444 None:intergenic 55.0%
GGAGCTTGGTCAAGCAAGCA+GGG - chr1_3:52051950-52051969 Msa0124340:CDS 55.0%
GAGCTTGGTCAAGCAAGCAG+GGG - chr1_3:52051951-52051970 Msa0124340:CDS 55.0%
AGCTTGGTCAAGCAAGCAGG+GGG - chr1_3:52051952-52051971 Msa0124340:CDS 55.0%
GGGTTTGCCCTCTTCCTTGC+AGG - chr1_3:52050115-52050134 Msa0124340:intron 60.0%
GGACCCCTTCCCCTGGAAAT+CGG - chr1_3:52051417-52051436 Msa0124340:intron 60.0%
GGCTGAACCCAAGGGACATG+AGG + chr1_3:52051655-52051674 None:intergenic 60.0%
GGGAGCTTGGTCAAGCAAGC+AGG - chr1_3:52051949-52051968 Msa0124340:CDS 60.0%
GCTTGGTCAAGCAAGCAGGG+GGG - chr1_3:52051953-52051972 Msa0124340:CDS 60.0%
CTTGGTCAAGCAAGCAGGGG+GGG - chr1_3:52051954-52051973 Msa0124340:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 52049340 52052312 52049340 ID=Msa0124340;Name=Msa0124340
chr1_3 mRNA 52049340 52052312 52049340 ID=Msa0124340-mRNA-1;Parent=Msa0124340;Name=Msa0124340-mRNA-1;_AED=0.06;_eAED=0.06;_QI=158|0|0.5|0.5|1|1|4|269|313
chr1_3 exon 52049340 52049732 52049340 ID=Msa0124340-mRNA-1:exon:15960;Parent=Msa0124340-mRNA-1
chr1_3 exon 52050597 52050642 52050597 ID=Msa0124340-mRNA-1:exon:15959;Parent=Msa0124340-mRNA-1
chr1_3 exon 52050905 52051018 52050905 ID=Msa0124340-mRNA-1:exon:15958;Parent=Msa0124340-mRNA-1
chr1_3 exon 52051497 52052312 52051497 ID=Msa0124340-mRNA-1:exon:15957;Parent=Msa0124340-mRNA-1
chr1_3 five_prime_UTR 52052155 52052312 52052155 ID=Msa0124340-mRNA-1:five_prime_utr;Parent=Msa0124340-mRNA-1
chr1_3 CDS 52051497 52052154 52051497 ID=Msa0124340-mRNA-1:cds;Parent=Msa0124340-mRNA-1
chr1_3 CDS 52050905 52051018 52050905 ID=Msa0124340-mRNA-1:cds;Parent=Msa0124340-mRNA-1
chr1_3 CDS 52050597 52050642 52050597 ID=Msa0124340-mRNA-1:cds;Parent=Msa0124340-mRNA-1
chr1_3 CDS 52049609 52049732 52049609 ID=Msa0124340-mRNA-1:cds;Parent=Msa0124340-mRNA-1
chr1_3 three_prime_UTR 52049340 52049608 52049340 ID=Msa0124340-mRNA-1:three_prime_utr;Parent=Msa0124340-mRNA-1
Gene Sequence

>Msa0124340

ATGGAGATACTTCCATTTGAAGGGCCGCTTCACTTTGACAGACTAGAGGAGCTTTCTTTGGAGAGCCTTTCAACCATACATGTTGAGTCAGAGTTCGCTAAAAGAGAAAAGGAACTATCTTTGAAAGCCAAAATAGCTCAAGAAAGATACCAAGATCTCTTCAAAGAACTCAAAATAATTGGCTCAACTTATGGTAAAACCATTGAACTTTTAACAAAGAAAAACAATGAATTGCAGGTTCAAGTCAAGAAATTGAAGGGTGTTGGTGATGATGATGGTAGTAGCTATGACTACGGCTACGAACTTGATGTGTTAAGAACAAAGAATGTTGAATTAGAGGAAACTGTGAAGAATAATTTGGCAACTATAAGCGAGCTGAGGAAAGAAAACAGCAGACTGGAAGATGAGAAACGCGGGGTTGAGAAATTGCTCAAGTCTGTGGACACGAAGTTCAGGGGACTGCATGAAAGAGTAGCGAGGTTGGAGGATGATACCGAACGTTTGATGAGTGTAGATGACTCTGAAGGGGAGCCTGATGTTGATCCTATGGTTGCTGCTTTGGAAGATGAAGATGAAGAGGATGTTGATGATTGTGAGTTCAGAAATGACACTGTTGAGGGTTTGCCCTCTTCCTTGCAGGGTGAGTCTTCATCTCTAGAGCATAAAAGTCTTAACACTACAATGTGGATTGACACTCATCCAAGCTATGAAACCTTGGTTTTGCTAGTTCCTTTACTTGTTGATTTGAATATTTGTGATCATATTGATAAAGATTCAGTTGTTGAGGTATATACCTCCTATCTTGGCCTTCAGCAAGTGCAAATCTATAAAGCAGAAAAGAGGAAAAGGGAGCTTGGTCAAGCAAGCAGGGGGGGAAATTATGTTGAAGAAGAGAAAAGACTGTTGAGAGACAATGGAGTTTGCTCTGGTTTTGATTCTTGA

Protein sequence

>Msa0124340

MEILPFEGPLHFDRLEELSLESLSTIHVESEFAKREKELSLKAKIAQERYQDLFKELKIIGSTYGKTIELLTKKNNELQVQVKKLKGVGDDDGSSYDYGYELDVLRTKNVELEETVKNNLATISELRKENSRLEDEKRGVEKLLKSVDTKFRGLHERVARLEDDTERLMSVDDSEGEPDVDPMVAALEDEDEEDVDDCEFRNDTVEGLPSSLQGESSSLEHKSLNTTMWIDTHPSYETLVLLVPLLVDLNICDHIDKDSVVEVYTSYLGLQQVQIYKAEKRKRELGQASRGGNYVEEEKRLLRDNGVCSGFDS*