Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456310 | RHN67489.1 | 98.148 | 108 | 2 | 0 | 1 | 108 | 1 | 108 | 6.17e-71 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456310 | sp|Q8GUM3|AAP5_ARATH | 65.591 | 93 | 32 | 0 | 12 | 104 | 16 | 108 | 8.18e-36 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456310 | A0A396IPA1 | 98.148 | 108 | 2 | 0 | 1 | 108 | 1 | 108 | 2.95e-71 | 219 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0364530 | Msa0456310 | 0.838917 | 2.161989e-57 | -8.615850e-47 |
| Msa0411800 | Msa0456310 | 0.837136 | 6.210905e-57 | -8.615850e-47 |
| Msa0456280 | Msa0456310 | 0.823101 | 1.660509e-53 | -8.615850e-47 |
| Msa0456310 | Msa0503740 | 0.844627 | 6.723796e-59 | -8.615850e-47 |
| Msa0456310 | Msa1316170 | 0.813592 | 2.367392e-51 | -8.615850e-47 |
| Msa0243620 | Msa0456310 | 0.800535 | 1.376936e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456310 | MtrunA17_Chr3g0103261 | 98.148 | 108 | 2 | 0 | 1 | 108 | 1 | 108 | 5.67e-75 | 219 |
| Msa0456310 | MtrunA17_Chr3g0103231 | 97.222 | 108 | 3 | 0 | 1 | 108 | 1 | 108 | 3.70e-70 | 216 |
| Msa0456310 | MtrunA17_Chr3g0103211 | 83.810 | 105 | 17 | 0 | 1 | 105 | 1 | 105 | 2.70e-58 | 186 |
| Msa0456310 | MtrunA17_Chr3g0103221 | 73.043 | 115 | 24 | 2 | 1 | 108 | 1 | 115 | 3.18e-47 | 157 |
| Msa0456310 | MtrunA17_Chr1g0206841 | 57.143 | 105 | 43 | 1 | 1 | 105 | 1 | 103 | 1.02e-37 | 122 |
| Msa0456310 | MtrunA17_Chr1g0146491 | 64.045 | 89 | 32 | 0 | 16 | 104 | 16 | 104 | 2.93e-36 | 128 |
| Msa0456310 | MtrunA17_Chr3g0125081 | 56.311 | 103 | 45 | 0 | 6 | 108 | 17 | 119 | 1.83e-35 | 125 |
| Msa0456310 | MtrunA17_Chr3g0125101 | 55.340 | 103 | 46 | 0 | 6 | 108 | 17 | 119 | 1.91e-35 | 125 |
| Msa0456310 | MtrunA17_Chr3g0125091 | 56.311 | 103 | 45 | 0 | 6 | 108 | 17 | 119 | 3.64e-35 | 125 |
| Msa0456310 | MtrunA17_Chr3g0140761 | 58.879 | 107 | 38 | 1 | 4 | 104 | 8 | 114 | 7.64e-35 | 124 |
| Msa0456310 | MtrunA17_Chr1g0206861 | 59.783 | 92 | 37 | 0 | 16 | 107 | 14 | 105 | 7.91e-35 | 117 |
| Msa0456310 | MtrunA17_Chr1g0159761 | 62.245 | 98 | 37 | 0 | 10 | 107 | 14 | 111 | 1.76e-34 | 123 |
| Msa0456310 | MtrunA17_Chr3g0130671 | 55.769 | 104 | 44 | 1 | 1 | 104 | 19 | 120 | 1.76e-32 | 114 |
| Msa0456310 | MtrunA17_Chr8g0384661 | 61.111 | 90 | 35 | 0 | 15 | 104 | 42 | 131 | 1.23e-31 | 115 |
| Msa0456310 | MtrunA17_Chr3g0130641 | 58.427 | 89 | 37 | 0 | 16 | 104 | 26 | 114 | 1.32e-31 | 115 |
| Msa0456310 | MtrunA17_Chr4g0037201 | 60.870 | 92 | 36 | 0 | 13 | 104 | 49 | 140 | 1.74e-31 | 115 |
| Msa0456310 | MtrunA17_Chr1g0206821 | 54.369 | 103 | 42 | 1 | 7 | 104 | 1 | 103 | 4.99e-31 | 114 |
| Msa0456310 | MtrunA17_Chr1g0146331 | 57.955 | 88 | 37 | 0 | 17 | 104 | 14 | 101 | 1.96e-30 | 112 |
| Msa0456310 | MtrunA17_Chr2g0293331 | 58.427 | 89 | 37 | 0 | 16 | 104 | 5 | 93 | 3.12e-30 | 111 |
| Msa0456310 | MtrunA17_Chr1g0146391 | 56.818 | 88 | 38 | 0 | 17 | 104 | 6 | 93 | 5.99e-30 | 110 |
| Msa0456310 | MtrunA17_Chr3g0103271 | 53.271 | 107 | 46 | 2 | 2 | 107 | 9 | 112 | 2.65e-29 | 109 |
| Msa0456310 | MtrunA17_Chr3g0130651 | 52.577 | 97 | 46 | 0 | 11 | 107 | 14 | 110 | 3.15e-29 | 108 |
| Msa0456310 | MtrunA17_Chr3g0140541 | 55.208 | 96 | 43 | 0 | 9 | 104 | 11 | 106 | 9.68e-29 | 107 |
| Msa0456310 | MtrunA17_Chr3g0140531 | 54.545 | 88 | 40 | 0 | 17 | 104 | 18 | 105 | 1.11e-28 | 107 |
| Msa0456310 | MtrunA17_Chr1g0146411 | 60.227 | 88 | 34 | 1 | 17 | 104 | 27 | 113 | 6.94e-28 | 105 |
| Msa0456310 | MtrunA17_Chr5g0447221 | 63.855 | 83 | 29 | 1 | 23 | 104 | 29 | 111 | 5.69e-27 | 102 |
| Msa0456310 | MtrunA17_Chr1g0206871 | 54.878 | 82 | 37 | 0 | 23 | 104 | 15 | 96 | 8.25e-26 | 99.8 |
| Msa0456310 | MtrunA17_Chr5g0447231 | 58.140 | 86 | 35 | 1 | 23 | 107 | 25 | 110 | 6.18e-24 | 94.4 |
| Msa0456310 | MtrunA17_Chr5g0402151 | 54.430 | 79 | 31 | 1 | 26 | 104 | 3 | 76 | 4.07e-22 | 87.4 |
| Msa0456310 | MtrunA17_Chr1g0146351 | 57.746 | 71 | 29 | 1 | 34 | 104 | 14 | 83 | 5.11e-21 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456310 | AT1G44100.1 | 65.591 | 93 | 32 | 0 | 12 | 104 | 16 | 108 | 8.31e-37 | 130 |
| Msa0456310 | AT5G09220.1 | 66.304 | 92 | 31 | 0 | 16 | 107 | 38 | 129 | 4.79e-36 | 128 |
| Msa0456310 | AT1G77380.1 | 65.263 | 95 | 33 | 0 | 10 | 104 | 16 | 110 | 8.36e-36 | 127 |
| Msa0456310 | AT5G63850.1 | 62.887 | 97 | 36 | 0 | 11 | 107 | 6 | 102 | 1.32e-35 | 126 |
| Msa0456310 | AT5G49630.1 | 57.732 | 97 | 41 | 0 | 8 | 104 | 17 | 113 | 4.31e-35 | 125 |
| Msa0456310 | AT1G58360.1 | 65.909 | 88 | 30 | 0 | 17 | 104 | 30 | 117 | 2.79e-34 | 123 |
| Msa0456310 | AT1G10010.1 | 65.909 | 88 | 30 | 0 | 17 | 104 | 21 | 108 | 3.69e-34 | 122 |
| Msa0456310 | AT1G10010.2 | 65.909 | 88 | 30 | 0 | 17 | 104 | 22 | 109 | 3.85e-34 | 122 |
| Msa0456310 | AT5G23810.5 | 58.696 | 92 | 37 | 1 | 19 | 109 | 21 | 112 | 1.49e-27 | 100 |
| Msa0456310 | AT5G23810.3 | 58.696 | 92 | 37 | 1 | 19 | 109 | 21 | 112 | 1.49e-27 | 100 |
| Msa0456310 | AT5G23810.4 | 58.696 | 92 | 37 | 1 | 19 | 109 | 21 | 112 | 2.41e-27 | 101 |
| Msa0456310 | AT5G23810.2 | 58.696 | 92 | 37 | 1 | 19 | 109 | 21 | 112 | 2.84e-27 | 102 |
| Msa0456310 | AT5G23810.1 | 58.696 | 92 | 37 | 1 | 19 | 109 | 21 | 112 | 3.71e-27 | 103 |
Find 154 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATAATGCTTACTTTATT+TGG | 0.040040 | 3_3:-49833938 | Msa0456310:three_prime_UTR |
| AACTTAGTTAAGCTCTTAAT+TGG | 0.162913 | 3_3:-49835670 | Msa0456310:three_prime_UTR |
| ATTGGGACTGATTTATTTAT+TGG | 0.167425 | 3_3:-49835652 | Msa0456310:three_prime_UTR |
| TGCAGAAAATGGAAGAATTA+TGG | 0.179312 | 3_3:-49834940 | Msa0456310:intron |
| CCTTACTTCAACCAAGTTCT+AGG | 0.184744 | 3_3:-49834178 | Msa0456310:three_prime_UTR |
| GGTAGGGATTAAGATATTTA+AGG | 0.191084 | 3_3:-49833860 | Msa0456310:three_prime_UTR |
| TAATAATGCTTACTTTATTT+GGG | 0.219006 | 3_3:-49833937 | Msa0456310:three_prime_UTR |
| TTGAATTTGAATCATATTCT+TGG | 0.237090 | 3_3:-49836352 | Msa0456310:five_prime_UTR |
| TATTAGGAGCTATAAATTTC+TGG | 0.241934 | 3_3:-49834153 | Msa0456310:three_prime_UTR |
| CTGACCTGAAAACCACTTTC+AGG | 0.250000 | 3_3:+49835856 | None:intergenic |
| TTGGAGCTTGGACTAGAAAA+TGG | 0.253711 | 3_3:-49834081 | Msa0456310:three_prime_UTR |
| TATTCAACCCTTCATGAATA+TGG | 0.259143 | 3_3:-49835734 | Msa0456310:three_prime_UTR |
| CATATCATCACAGCAGTTAT+TGG | 0.260349 | 3_3:-49836131 | Msa0456310:CDS |
| TATGAGGTAATTATTATATA+AGG | 0.261161 | 3_3:+49836516 | None:intergenic |
| AGAAATCCTGATTCGGTAAC+TGG | 0.263130 | 3_3:-49835987 | Msa0456310:CDS |
| CATTAGCCATCGTGAGCTTA+TGG | 0.264248 | 3_3:-49835378 | Msa0456310:three_prime_UTR |
| AAATAAAGTAAGCATTATTA+AGG | 0.273350 | 3_3:+49833940 | None:intergenic |
| TGCTTTGGATATGCAGCTTT+TGG | 0.275745 | 3_3:-49834617 | Msa0456310:three_prime_UTR |
| TTTATTGTACTAACGATTAC+AGG | 0.280046 | 3_3:-49835301 | Msa0456310:three_prime_UTR |
| CTTTCAGGTTATAACTATTA+TGG | 0.289880 | 3_3:+49835871 | None:intergenic |
| GGAAATCTCTTGACAGGGTT+TGG | 0.296932 | 3_3:-49834581 | Msa0456310:three_prime_UTR |
| TTCTGTAACAATCAGATAAA+AGG | 0.300294 | 3_3:+49836006 | None:intergenic |
| TCATTTGGTTGGAGGATATC+AGG | 0.300513 | 3_3:-49834507 | Msa0456310:intron |
| AACCAAGTTCTAGGAGTATT+AGG | 0.305848 | 3_3:-49834169 | Msa0456310:three_prime_UTR |
| CTGCACTACTAATTTCATTC+AGG | 0.306558 | 3_3:+49835536 | None:intergenic |
| AGAGAATCAAACAATGAAAA+AGG | 0.309261 | 3_3:-49834690 | Msa0456310:three_prime_UTR |
| TACCTATGTTGTGGTTGCTT+TGG | 0.310192 | 3_3:-49834632 | Msa0456310:three_prime_UTR |
| CTAGAAAATGGATTGTTCTA+AGG | 0.318873 | 3_3:-49834069 | Msa0456310:three_prime_UTR |
| TCCTTTACATACTCATTCAT+TGG | 0.319715 | 3_3:-49835116 | Msa0456310:three_prime_UTR |
| TCAAGAAGGATAATTGAATA+TGG | 0.335571 | 3_3:+49834831 | None:intergenic |
| CTTCAAATTACAAAAGCTTC+TGG | 0.337199 | 3_3:-49836305 | Msa0456310:CDS |
| CAAAATCTGGTTAATCTTCC+AGG | 0.338409 | 3_3:-49834880 | Msa0456310:three_prime_UTR |
| GTCACAATGGTTGGATTTGT+TGG | 0.343475 | 3_3:-49834022 | Msa0456310:three_prime_UTR |
| ATATCAAATTACAAATTTGT+TGG | 0.343732 | 3_3:+49833774 | None:intergenic |
| GCAGAAAATGGAAGAATTAT+GGG | 0.345376 | 3_3:-49834939 | Msa0456310:intron |
| TACAAATTTGTTGGAAAGAA+GGG | 0.347337 | 3_3:+49833783 | None:intergenic |
| AACCCTGTCAAGAGATTTCC+TGG | 0.353548 | 3_3:+49834584 | None:intergenic |
| AAGTTCACAAAGCCACTGTT+AGG | 0.357397 | 3_3:+49834310 | None:intergenic |
| ATAGCATATAGTAATTATAT+TGG | 0.358357 | 3_3:+49836441 | None:intergenic |
| CTAAAGTTCCTAACAAAATC+TGG | 0.359899 | 3_3:-49834893 | Msa0456310:three_prime_UTR |
| AATTATCCTTCTTGAGATAC+AGG | 0.364268 | 3_3:-49834823 | Msa0456310:intron |
| TGTACAAAGTACATCTCAAC+TGG | 0.365334 | 3_3:+49834112 | None:intergenic |
| TGCTTCCTTGTCACAATGGT+TGG | 0.382618 | 3_3:-49834031 | Msa0456310:three_prime_UTR |
| TGTTTGTATTATCATTCATT+TGG | 0.384293 | 3_3:-49834522 | Msa0456310:three_prime_UTR |
| CACCTATATGTTACATGCTT+AGG | 0.387805 | 3_3:+49835478 | None:intergenic |
| CTGAAACCCAAGCCATGTTA+TGG | 0.388567 | 3_3:+49835156 | None:intergenic |
| AGAGAGAAAATTAGTGGAAA+AGG | 0.394800 | 3_3:-49833980 | Msa0456310:three_prime_UTR |
| GTAGGGATTAAGATATTTAA+GGG | 0.396244 | 3_3:-49833859 | Msa0456310:three_prime_UTR |
| CACCAAGCTCCTTGTAGTTA+TGG | 0.397483 | 3_3:-49835242 | Msa0456310:three_prime_UTR |
| TTCAGAGTTGTTAGATAGGT+AGG | 0.409624 | 3_3:-49833877 | Msa0456310:three_prime_UTR |
| CTATCAGCAGTACTATATAT+TGG | 0.413370 | 3_3:+49834352 | None:intergenic |
| ATCTCAAAAGCTGGTAATAG+AGG | 0.416607 | 3_3:+49834268 | None:intergenic |
| TGTATTATCATTCATTTGGT+TGG | 0.421033 | 3_3:-49834518 | Msa0456310:three_prime_UTR |
| TTACAAATTTGTTGGAAAGA+AGG | 0.422608 | 3_3:+49833782 | None:intergenic |
| ATATTCATGAAGGGTTGAAT+AGG | 0.424614 | 3_3:+49835736 | None:intergenic |
| TACAGAAGAAAGTTGGAGCT+TGG | 0.429896 | 3_3:-49834093 | Msa0456310:three_prime_UTR |
| AGAATTATGGGAAGTATAAC+CGG | 0.432019 | 3_3:-49834927 | Msa0456310:three_prime_UTR |
| ATCACAGCAGTTATTGGTTC+CGG | 0.434147 | 3_3:-49836125 | Msa0456310:CDS |
| GCACAACAAAGCAAGGTAAC+TGG | 0.434792 | 3_3:+49836053 | None:intergenic |
| AGCTATAAATTTCTGGCCAT+TGG | 0.438131 | 3_3:-49834146 | Msa0456310:three_prime_UTR |
| GGATTTGTTGGATCATTTGA+AGG | 0.441279 | 3_3:-49834010 | Msa0456310:three_prime_UTR |
| ATCATAAGAGAGAAAATTAG+TGG | 0.441440 | 3_3:-49833986 | Msa0456310:three_prime_UTR |
| ATTGTTTGATTCTCTGGTGG+AGG | 0.441973 | 3_3:+49834698 | None:intergenic |
| TATATAGTACTGCTGATAGA+TGG | 0.446965 | 3_3:-49834348 | Msa0456310:three_prime_UTR |
| AGAATATGATTCAAATTCAA+TGG | 0.447370 | 3_3:+49836355 | None:intergenic |
| AACTACATGCCCTTATTGCT+TGG | 0.452376 | 3_3:+49835578 | None:intergenic |
| CAAATAGAGCCTAAAAGAAA+AGG | 0.460019 | 3_3:+49835700 | None:intergenic |
| CTTTATTTGGGGTTGTACAT+TGG | 0.462786 | 3_3:-49833925 | Msa0456310:three_prime_UTR |
| CCTAGAACTTGGTTGAAGTA+AGG | 0.463113 | 3_3:+49834178 | None:intergenic |
| AACCTGTATATGATACTGTT+TGG | 0.465467 | 3_3:-49835215 | Msa0456310:three_prime_UTR |
| CGGATCTCCATAACATGGCT+TGG | 0.466830 | 3_3:-49835163 | Msa0456310:three_prime_UTR |
| ATGATGATGGACATGCAAAA+AGG | 0.466879 | 3_3:-49836274 | Msa0456310:CDS |
| ACTTAGTTAAGCTCTTAATT+GGG | 0.467111 | 3_3:-49835669 | Msa0456310:three_prime_UTR |
| TGCTTGCTTCCTTGTCACAA+TGG | 0.469755 | 3_3:-49834035 | Msa0456310:three_prime_UTR |
| TATTAGCACTAATTATACTT+TGG | 0.470312 | 3_3:-49835622 | Msa0456310:three_prime_UTR |
| AGGCAACATCACCAAGTGCC+TGG | 0.470572 | 3_3:+49834862 | None:intergenic |
| GATGCTGTTAGAGTTAATCT+TGG | 0.473459 | 3_3:-49835942 | Msa0456310:CDS |
| TTCATTGTTTGATTCTCTGG+TGG | 0.473763 | 3_3:+49834695 | None:intergenic |
| ACACCAGGAAATCTCTTGAC+AGG | 0.477743 | 3_3:-49834587 | Msa0456310:three_prime_UTR |
| ATTATCATTCATTTGGTTGG+AGG | 0.478152 | 3_3:-49834515 | Msa0456310:three_prime_UTR |
| CTCCTAATACTCCTAGAACT+TGG | 0.478581 | 3_3:+49834167 | None:intergenic |
| TAAGTCTTCCATATTCATGA+AGG | 0.478977 | 3_3:+49835726 | None:intergenic |
| GGATCTCCATAACATGGCTT+GGG | 0.481533 | 3_3:-49835162 | Msa0456310:three_prime_UTR |
| ACCTATATGTTACATGCTTA+GGG | 0.484595 | 3_3:+49835479 | None:intergenic |
| TTACCACAGCCACCAGTTTG+AGG | 0.485369 | 3_3:-49835766 | Msa0456310:three_prime_UTR |
| TACTTTGTACAGAAGAAAGT+TGG | 0.486927 | 3_3:-49834100 | Msa0456310:three_prime_UTR |
| GTCCAAACAGTATCATATAC+AGG | 0.491028 | 3_3:+49835213 | None:intergenic |
| CTGAATGAAATTAGTAGTGC+AGG | 0.491585 | 3_3:-49835535 | Msa0456310:three_prime_UTR |
| ATAGGAGAATTACCTCAAAC+TGG | 0.495289 | 3_3:+49835754 | None:intergenic |
| TCAGAGTTGTTAGATAGGTA+GGG | 0.495375 | 3_3:-49833876 | Msa0456310:three_prime_UTR |
| ACTGCTCAACTAGGATGGAT+TGG | 0.498130 | 3_3:-49836080 | Msa0456310:CDS |
| TATAGTAATTATATTGGCAT+GGG | 0.501139 | 3_3:+49836447 | None:intergenic |
| TGGTTAATCTTCCAGGCACT+TGG | 0.501530 | 3_3:-49834873 | Msa0456310:three_prime_UTR |
| CTGATTCGGTAACTGGGAAA+AGG | 0.501707 | 3_3:-49835980 | Msa0456310:CDS |
| TCAAATTGCTATCATAAAGA+AGG | 0.504054 | 3_3:-49835266 | Msa0456310:three_prime_UTR |
| AATTGAATATGGATAGGAAA+AGG | 0.504294 | 3_3:+49834842 | None:intergenic |
| ATAAATATGTATCATTAGCT+TGG | 0.504982 | 3_3:+49835319 | None:intergenic |
| TTACCTCAAACTGGTGGCTG+TGG | 0.507380 | 3_3:+49835763 | None:intergenic |
| GGATTAAGATATTTAAGGGA+TGG | 0.514086 | 3_3:-49833855 | Msa0456310:three_prime_UTR |
| GATTGTAATGTCGTTCATAC+CGG | 0.514727 | 3_3:-49835183 | Msa0456310:three_prime_UTR |
| CAAGCCATGTTATGGAGATC+CGG | 0.515900 | 3_3:+49835164 | None:intergenic |
| TAAAATAAGAACATCTGCAT+TGG | 0.516785 | 3_3:-49836407 | Msa0456310:five_prime_UTR |
| TTGTTACAGAAATCCTGATT+CGG | 0.518368 | 3_3:-49835994 | Msa0456310:CDS |
| TCCCTAAGCATGTAACATAT+AGG | 0.518564 | 3_3:-49835480 | Msa0456310:three_prime_UTR |
| TCCAATGAATGAGTATGTAA+AGG | 0.518895 | 3_3:+49835115 | None:intergenic |
| AATATGTATCATTAGCTTGG+TGG | 0.523632 | 3_3:+49835322 | None:intergenic |
| CTGCATGATCTGTGATTATG+AGG | 0.527869 | 3_3:+49836500 | None:intergenic |
| AAGCAATAAGGGCATGTAGT+TGG | 0.531079 | 3_3:-49835576 | Msa0456310:three_prime_UTR |
| ATGAATGATAATACAAACAT+TGG | 0.532293 | 3_3:+49834526 | None:intergenic |
| GCAATGTCAATAAGCCAGTA+AGG | 0.536074 | 3_3:+49834548 | None:intergenic |
| AAAAGATTTATCTCAAAAGC+TGG | 0.538707 | 3_3:+49834259 | None:intergenic |
| AACTTTAGCAGTTTGTACTC+CGG | 0.539477 | 3_3:+49834908 | None:intergenic |
| CACCATAACTACAAGGAGCT+TGG | 0.540039 | 3_3:+49835240 | None:intergenic |
| GAAATCCTGATTCGGTAACT+GGG | 0.541547 | 3_3:-49835986 | Msa0456310:CDS |
| AAGGATAATTGAATATGGAT+AGG | 0.542619 | 3_3:+49834836 | None:intergenic |
| ACATTCTTCTACCTATGTTG+TGG | 0.547579 | 3_3:-49834641 | Msa0456310:three_prime_UTR |
| TCTGGTGCTTATGATGATGA+TGG | 0.551479 | 3_3:-49836287 | Msa0456310:CDS |
| CAGAAGAGAACATATGTGGC+TGG | 0.552807 | 3_3:-49835836 | Msa0456310:three_prime_UTR |
| AATAATGCTTACTTTATTTG+GGG | 0.553190 | 3_3:-49833936 | Msa0456310:three_prime_UTR |
| TAATAGTTATAACCTGAAAG+TGG | 0.553489 | 3_3:-49835868 | Msa0456310:three_prime_UTR |
| GAAAAGGAACTACTCTTACA+TGG | 0.555365 | 3_3:-49835964 | Msa0456310:CDS |
| GGAGTACTGCTCAACTAGGA+TGG | 0.557246 | 3_3:-49836085 | Msa0456310:CDS |
| AGCTATGTGATTTCAACCAC+TGG | 0.557700 | 3_3:-49834217 | Msa0456310:three_prime_UTR |
| ATATAGTAATTATATTGGCA+TGG | 0.572477 | 3_3:+49836446 | None:intergenic |
| ACATACTCATTCATTGGACT+AGG | 0.574709 | 3_3:-49835110 | Msa0456310:three_prime_UTR |
| AACTATTGCACAACAAAGCA+AGG | 0.575679 | 3_3:+49836046 | None:intergenic |
| AGTTCACAAAGCCACTGTTA+GGG | 0.579651 | 3_3:+49834311 | None:intergenic |
| TTAATGTAATGTAATAGTAG+TGG | 0.583560 | 3_3:-49833902 | Msa0456310:three_prime_UTR |
| AAGGTACCTGTATCTCAAGA+AGG | 0.587507 | 3_3:+49834817 | None:intergenic |
| CACCAGGAAATCTCTTGACA+GGG | 0.588202 | 3_3:-49834586 | Msa0456310:three_prime_UTR |
| AAGTCTTCCATATTCATGAA+GGG | 0.591584 | 3_3:+49835727 | None:intergenic |
| GCTCAACTAGGATGGATTGG+AGG | 0.592122 | 3_3:-49836077 | Msa0456310:CDS |
| TTATTGTACTAACGATTACA+GGG | 0.603446 | 3_3:-49835300 | Msa0456310:three_prime_UTR |
| GCATGGAGTACTGCTCAACT+AGG | 0.605078 | 3_3:-49836089 | Msa0456310:CDS |
| TGTAATGAAGATTGCAACCA+TGG | 0.609614 | 3_3:+49834664 | None:intergenic |
| GGCAACACTAGTTCCATACA+AGG | 0.612966 | 3_3:+49835796 | None:intergenic |
| ATCCAAAGCAACCACAACAT+AGG | 0.618276 | 3_3:+49834630 | None:intergenic |
| ACTGGGAAATATATAGCCAA+TGG | 0.620156 | 3_3:+49834130 | None:intergenic |
| AGGTCAGAAGAGAACATATG+TGG | 0.620868 | 3_3:-49835840 | Msa0456310:three_prime_UTR |
| ATAGTAATTATATTGGCATG+GGG | 0.621448 | 3_3:+49836448 | None:intergenic |
| TCATTCATTGGACTAGGACT+CGG | 0.632481 | 3_3:-49835104 | Msa0456310:three_prime_UTR |
| CAAGCTCCTTGTAGTTATGG+TGG | 0.635828 | 3_3:-49835239 | Msa0456310:three_prime_UTR |
| CATACCGGATCTCCATAACA+TGG | 0.636804 | 3_3:-49835168 | Msa0456310:three_prime_UTR |
| CAAATCCAACCATTGTGACA+AGG | 0.640388 | 3_3:+49834026 | None:intergenic |
| AGGTTACCACCATAACTACA+AGG | 0.640686 | 3_3:+49835233 | None:intergenic |
| AAATAAAATTGCAAGTCCAG+TGG | 0.655306 | 3_3:+49834201 | None:intergenic |
| AGGAAATTTAAAGAGTGCTG+TGG | 0.662726 | 3_3:-49836156 | Msa0456310:CDS |
| GGAGAATTACCTCAAACTGG+TGG | 0.671169 | 3_3:+49835757 | None:intergenic |
| AAGCTATGTACAAAGTTGAG+TGG | 0.675760 | 3_3:+49835505 | None:intergenic |
| GGTGGCTGTGGTAAGTACAC+AGG | 0.685509 | 3_3:+49835775 | None:intergenic |
| GTACAAAGTACATCTCAACT+GGG | 0.704796 | 3_3:+49834113 | None:intergenic |
| CCATGCCAAAGACAAAACAC+CGG | 0.705880 | 3_3:+49836106 | None:intergenic |
| TAGTAATTATATTGGCATGG+GGG | 0.710364 | 3_3:+49836449 | None:intergenic |
| TTATTTCCATAAGCTCACGA+TGG | 0.715128 | 3_3:+49835372 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTCAAATATAATGTTTT+AGG | - | chr3_3:49835508-49835527 | Msa0456310:three_prime_UTR | 10.0% |
| !! | TATGAGGTAATTATTATATA+AGG | + | chr3_3:49833780-49833799 | None:intergenic | 15.0% |
| !! | ATAGCATATAGTAATTATAT+TGG | + | chr3_3:49833855-49833874 | None:intergenic | 15.0% |
| !! | ATTTGAATATGAAATGTTTA+AGG | + | chr3_3:49835498-49835517 | None:intergenic | 15.0% |
| !!! | AATTACTAGTGAATTTTAAT+TGG | + | chr3_3:49835831-49835850 | None:intergenic | 15.0% |
| !! | ACATACTATTAATACATTAT+TGG | - | chr3_3:49835876-49835895 | Msa0456310:three_prime_UTR | 15.0% |
| !! | AAATAAAGTAAGCATTATTA+AGG | + | chr3_3:49836356-49836375 | None:intergenic | 15.0% |
| !! | TTAATAATGCTTACTTTATT+TGG | - | chr3_3:49836355-49836374 | Msa0456310:five_prime_UTR | 15.0% |
| !!! | TAATAATGCTTACTTTATTT+GGG | - | chr3_3:49836356-49836375 | Msa0456310:five_prime_UTR | 15.0% |
| !! | ATATCAAATTACAAATTTGT+TGG | + | chr3_3:49836522-49836541 | None:intergenic | 15.0% |
| !! | TATAGTAATTATATTGGCAT+GGG | + | chr3_3:49833849-49833868 | None:intergenic | 20.0% |
| !! | ATATAGTAATTATATTGGCA+TGG | + | chr3_3:49833850-49833869 | None:intergenic | 20.0% |
| !! | AGAATATGATTCAAATTCAA+TGG | + | chr3_3:49833941-49833960 | None:intergenic | 20.0% |
| !! | TTGAATTTGAATCATATTCT+TGG | - | chr3_3:49833941-49833960 | Msa0456310:three_prime_UTR | 20.0% |
| !! | ATCATATTCTTGGATAAAAA+TGG | - | chr3_3:49833951-49833970 | Msa0456310:three_prime_UTR | 20.0% |
| !! | TGTATATGAGAAAAATGAAT+TGG | + | chr3_3:49834088-49834107 | None:intergenic | 20.0% |
| !!! | ATTCATTTTTCTCATATACA+TGG | - | chr3_3:49834088-49834107 | Msa0456310:three_prime_UTR | 20.0% |
| !! | TATTAGCACTAATTATACTT+TGG | - | chr3_3:49834671-49834690 | Msa0456310:three_prime_UTR | 20.0% |
| !! | ATAAATATGTATCATTAGCT+TGG | + | chr3_3:49834977-49834996 | None:intergenic | 20.0% |
| !! | ATGAATGATAATACAAACAT+TGG | + | chr3_3:49835770-49835789 | None:intergenic | 20.0% |
| !! | TGTTTGTATTATCATTCATT+TGG | - | chr3_3:49835771-49835790 | Msa0456310:three_prime_UTR | 20.0% |
| !!! | TAGTGAATTTTAATTGGTAA+GGG | + | chr3_3:49835825-49835844 | None:intergenic | 20.0% |
| !! | GTATTAATAGTATGTAACAT+GGG | + | chr3_3:49835871-49835890 | None:intergenic | 20.0% |
| !! | TGTATTAATAGTATGTAACA+TGG | + | chr3_3:49835872-49835891 | None:intergenic | 20.0% |
| !!! | ATTATTGGTTTTCATCTATA+TGG | - | chr3_3:49835891-49835910 | Msa0456310:three_prime_UTR | 20.0% |
| !!! | AATAATGCTTACTTTATTTG+GGG | - | chr3_3:49836357-49836376 | Msa0456310:five_prime_UTR | 20.0% |
| !! | TTAATGTAATGTAATAGTAG+TGG | - | chr3_3:49836391-49836410 | Msa0456310:five_prime_UTR | 20.0% |
| ! | ATAGTAATTATATTGGCATG+GGG | + | chr3_3:49833848-49833867 | None:intergenic | 25.0% |
| ! | TAAAATAAGAACATCTGCAT+TGG | - | chr3_3:49833886-49833905 | Msa0456310:three_prime_UTR | 25.0% |
| ! | TATTCTTGGATAAAAATGGA+TGG | - | chr3_3:49833955-49833974 | Msa0456310:three_prime_UTR | 25.0% |
| ! | ATTCTTGGATAAAAATGGAT+GGG | - | chr3_3:49833956-49833975 | Msa0456310:three_prime_UTR | 25.0% |
| ! | TTCTGTAACAATCAGATAAA+AGG | + | chr3_3:49834290-49834309 | None:intergenic | 25.0% |
| !!! | CTTTCAGGTTATAACTATTA+TGG | + | chr3_3:49834425-49834444 | None:intergenic | 25.0% |
| ! | TAATAGTTATAACCTGAAAG+TGG | - | chr3_3:49834425-49834444 | Msa0456310:intron | 25.0% |
| !! | GACTTATTTCCTTTTCTTTT+AGG | - | chr3_3:49834584-49834603 | Msa0456310:three_prime_UTR | 25.0% |
| ! | AACTTAGTTAAGCTCTTAAT+TGG | - | chr3_3:49834623-49834642 | Msa0456310:three_prime_UTR | 25.0% |
| ! | ACTTAGTTAAGCTCTTAATT+GGG | - | chr3_3:49834624-49834643 | Msa0456310:three_prime_UTR | 25.0% |
| !! | ATTGGGACTGATTTATTTAT+TGG | - | chr3_3:49834641-49834660 | Msa0456310:three_prime_UTR | 25.0% |
| !!! | TTTTGTTTTACCAAGCAATA+AGG | - | chr3_3:49834705-49834724 | Msa0456310:three_prime_UTR | 25.0% |
| !!! | TTTGTTTTACCAAGCAATAA+GGG | - | chr3_3:49834706-49834725 | Msa0456310:three_prime_UTR | 25.0% |
| ! | TTTATTGTACTAACGATTAC+AGG | - | chr3_3:49834992-49835011 | Msa0456310:intron | 25.0% |
| ! | TTATTGTACTAACGATTACA+GGG | - | chr3_3:49834993-49835012 | Msa0456310:intron | 25.0% |
| ! | TCAAATTGCTATCATAAAGA+AGG | - | chr3_3:49835027-49835046 | Msa0456310:intron | 25.0% |
| ! | ATTGTTGTGACAATTATTGT+GGG | + | chr3_3:49835269-49835288 | None:intergenic | 25.0% |
| ! | AATTGTTGTGACAATTATTG+TGG | + | chr3_3:49835270-49835289 | None:intergenic | 25.0% |
| !! | AAGATTAACCAGATTTTGTT+AGG | + | chr3_3:49835411-49835430 | None:intergenic | 25.0% |
| ! | AATTGAATATGGATAGGAAA+AGG | + | chr3_3:49835454-49835473 | None:intergenic | 25.0% |
| ! | AAGGATAATTGAATATGGAT+AGG | + | chr3_3:49835460-49835479 | None:intergenic | 25.0% |
| ! | TCAAGAAGGATAATTGAATA+TGG | + | chr3_3:49835465-49835484 | None:intergenic | 25.0% |
| ! | TATTGAATTATGTTGAGAAC+AGG | - | chr3_3:49835558-49835577 | Msa0456310:three_prime_UTR | 25.0% |
| !! | TTTTTCATTGTTTGATTCTC+TGG | + | chr3_3:49835604-49835623 | None:intergenic | 25.0% |
| ! | AGAGAATCAAACAATGAAAA+AGG | - | chr3_3:49835603-49835622 | Msa0456310:three_prime_UTR | 25.0% |
| ! | TGTATTATCATTCATTTGGT+TGG | - | chr3_3:49835775-49835794 | Msa0456310:three_prime_UTR | 25.0% |
| !!! | CTAGTGAATTTTAATTGGTA+AGG | + | chr3_3:49835826-49835845 | None:intergenic | 25.0% |
| ! | AAAAGATTTATCTCAAAAGC+TGG | + | chr3_3:49836037-49836056 | None:intergenic | 25.0% |
| ! | TATTAGGAGCTATAAATTTC+TGG | - | chr3_3:49836140-49836159 | Msa0456310:CDS | 25.0% |
| ! | ATCATAAGAGAGAAAATTAG+TGG | - | chr3_3:49836307-49836326 | Msa0456310:CDS | 25.0% |
| ! | GTAGGGATTAAGATATTTAA+GGG | - | chr3_3:49836434-49836453 | Msa0456310:five_prime_UTR | 25.0% |
| !!! | TACAAATTTGTTGGAAAGAA+GGG | + | chr3_3:49836513-49836532 | None:intergenic | 25.0% |
| !!! | TTACAAATTTGTTGGAAAGA+AGG | + | chr3_3:49836514-49836533 | None:intergenic | 25.0% |
| TAGTAATTATATTGGCATGG+GGG | + | chr3_3:49833847-49833866 | None:intergenic | 30.0% | |
| CTTCAAATTACAAAAGCTTC+TGG | - | chr3_3:49833988-49834007 | Msa0456310:three_prime_UTR | 30.0% | |
| !! | ATATCGAATATTGTTTCTGC+AGG | - | chr3_3:49834117-49834136 | Msa0456310:three_prime_UTR | 30.0% |
| TTGTTACAGAAATCCTGATT+CGG | - | chr3_3:49834299-49834318 | Msa0456310:three_prime_UTR | 30.0% | |
| CATACAAGGTCAAAAATTGA+AGG | + | chr3_3:49834486-49834505 | None:intergenic | 30.0% | |
| ! | CTTCAATTTTTGACCTTGTA+TGG | - | chr3_3:49834484-49834503 | Msa0456310:intron | 30.0% |
| ATATTCATGAAGGGTTGAAT+AGG | + | chr3_3:49834560-49834579 | None:intergenic | 30.0% | |
| TATTCAACCCTTCATGAATA+TGG | - | chr3_3:49834559-49834578 | Msa0456310:three_prime_UTR | 30.0% | |
| AAGTCTTCCATATTCATGAA+GGG | + | chr3_3:49834569-49834588 | None:intergenic | 30.0% | |
| TAAGTCTTCCATATTCATGA+AGG | + | chr3_3:49834570-49834589 | None:intergenic | 30.0% | |
| CAAATAGAGCCTAAAAGAAA+AGG | + | chr3_3:49834596-49834615 | None:intergenic | 30.0% | |
| ! | CTTTTCTTTTAGGCTCTATT+TGG | - | chr3_3:49834594-49834613 | Msa0456310:three_prime_UTR | 30.0% |
| ACCTATATGTTACATGCTTA+GGG | + | chr3_3:49834817-49834836 | None:intergenic | 30.0% | |
| ! | AACAGCTTATAACTTGTATG+AGG | + | chr3_3:49834893-49834912 | None:intergenic | 30.0% |
| ! | AATATGTATCATTAGCTTGG+TGG | + | chr3_3:49834974-49834993 | None:intergenic | 30.0% |
| AACCTGTATATGATACTGTT+TGG | - | chr3_3:49835078-49835097 | Msa0456310:intron | 30.0% | |
| TCCTTTACATACTCATTCAT+TGG | - | chr3_3:49835177-49835196 | Msa0456310:three_prime_UTR | 30.0% | |
| TCCAATGAATGAGTATGTAA+AGG | + | chr3_3:49835181-49835200 | None:intergenic | 30.0% | |
| GTCACAACAATTGCAAAAAA+TGG | - | chr3_3:49835278-49835297 | Msa0456310:three_prime_UTR | 30.0% | |
| AACTCAACGTCTATATTTCA+GGG | + | chr3_3:49835321-49835340 | None:intergenic | 30.0% | |
| AAACTCAACGTCTATATTTC+AGG | + | chr3_3:49835322-49835341 | None:intergenic | 30.0% | |
| TGCAGAAAATGGAAGAATTA+TGG | - | chr3_3:49835353-49835372 | Msa0456310:three_prime_UTR | 30.0% | |
| GCAGAAAATGGAAGAATTAT+GGG | - | chr3_3:49835354-49835373 | Msa0456310:three_prime_UTR | 30.0% | |
| ! | AGAATTATGGGAAGTATAAC+CGG | - | chr3_3:49835366-49835385 | Msa0456310:three_prime_UTR | 30.0% |
| CTAAAGTTCCTAACAAAATC+TGG | - | chr3_3:49835400-49835419 | Msa0456310:intron | 30.0% | |
| AATTATCCTTCTTGAGATAC+AGG | - | chr3_3:49835470-49835489 | Msa0456310:three_prime_UTR | 30.0% | |
| ATTATCATTCATTTGGTTGG+AGG | - | chr3_3:49835778-49835797 | Msa0456310:three_prime_UTR | 30.0% | |
| TTTAATTGGTAAGGGACTAA+GGG | + | chr3_3:49835817-49835836 | None:intergenic | 30.0% | |
| !! | TTTTAATTGGTAAGGGACTA+AGG | + | chr3_3:49835818-49835837 | None:intergenic | 30.0% |
| CTATCAGCAGTACTATATAT+TGG | + | chr3_3:49835944-49835963 | None:intergenic | 30.0% | |
| TATATAGTACTGCTGATAGA+TGG | - | chr3_3:49835945-49835964 | Msa0456310:CDS | 30.0% | |
| AAATAAAATTGCAAGTCCAG+TGG | + | chr3_3:49836095-49836114 | None:intergenic | 30.0% | |
| TACTTTGTACAGAAGAAAGT+TGG | - | chr3_3:49836193-49836212 | Msa0456310:intron | 30.0% | |
| !! | CTAGAAAATGGATTGTTCTA+AGG | - | chr3_3:49836224-49836243 | Msa0456310:intron | 30.0% |
| AGAGAGAAAATTAGTGGAAA+AGG | - | chr3_3:49836313-49836332 | Msa0456310:CDS | 30.0% | |
| GGTAGGGATTAAGATATTTA+AGG | - | chr3_3:49836433-49836452 | Msa0456310:five_prime_UTR | 30.0% | |
| GGATTAAGATATTTAAGGGA+TGG | - | chr3_3:49836438-49836457 | Msa0456310:five_prime_UTR | 30.0% | |
| !! | ATGATGATGGACATGCAAAA+AGG | - | chr3_3:49834019-49834038 | Msa0456310:three_prime_UTR | 35.0% |
| !! | AGGAAATTTAAAGAGTGCTG+TGG | - | chr3_3:49834137-49834156 | Msa0456310:three_prime_UTR | 35.0% |
| CATATCATCACAGCAGTTAT+TGG | - | chr3_3:49834162-49834181 | Msa0456310:three_prime_UTR | 35.0% | |
| AACTATTGCACAACAAAGCA+AGG | + | chr3_3:49834250-49834269 | None:intergenic | 35.0% | |
| GAAAAGGAACTACTCTTACA+TGG | - | chr3_3:49834329-49834348 | Msa0456310:three_prime_UTR | 35.0% | |
| GATGCTGTTAGAGTTAATCT+TGG | - | chr3_3:49834351-49834370 | Msa0456310:three_prime_UTR | 35.0% | |
| ! | ATAACCTGAAAGTGGTTTTC+AGG | - | chr3_3:49834433-49834452 | Msa0456310:intron | 35.0% |
| ATAGGAGAATTACCTCAAAC+TGG | + | chr3_3:49834542-49834561 | None:intergenic | 35.0% | |
| CTGCACTACTAATTTCATTC+AGG | + | chr3_3:49834760-49834779 | None:intergenic | 35.0% | |
| CTGAATGAAATTAGTAGTGC+AGG | - | chr3_3:49834758-49834777 | Msa0456310:intron | 35.0% | |
| AAGCTATGTACAAAGTTGAG+TGG | + | chr3_3:49834791-49834810 | None:intergenic | 35.0% | |
| TCCCTAAGCATGTAACATAT+AGG | - | chr3_3:49834813-49834832 | Msa0456310:intron | 35.0% | |
| CACCTATATGTTACATGCTT+AGG | + | chr3_3:49834818-49834837 | None:intergenic | 35.0% | |
| TTATTTCCATAAGCTCACGA+TGG | + | chr3_3:49834924-49834943 | None:intergenic | 35.0% | |
| GTCCAAACAGTATCATATAC+AGG | + | chr3_3:49835083-49835102 | None:intergenic | 35.0% | |
| GATTGTAATGTCGTTCATAC+CGG | - | chr3_3:49835110-49835129 | Msa0456310:three_prime_UTR | 35.0% | |
| ACATACTCATTCATTGGACT+AGG | - | chr3_3:49835183-49835202 | Msa0456310:three_prime_UTR | 35.0% | |
| TTGTGACAATTATTGTGGGA+CGG | + | chr3_3:49835265-49835284 | None:intergenic | 35.0% | |
| AATCGCGTTATTGCAGAAAA+TGG | - | chr3_3:49835342-49835361 | Msa0456310:three_prime_UTR | 35.0% | |
| AACTTTAGCAGTTTGTACTC+CGG | + | chr3_3:49835388-49835407 | None:intergenic | 35.0% | |
| CAAAATCTGGTTAATCTTCC+AGG | - | chr3_3:49835413-49835432 | Msa0456310:intron | 35.0% | |
| TTCATTGTTTGATTCTCTGG+TGG | + | chr3_3:49835601-49835620 | None:intergenic | 35.0% | |
| AACAATGAAAAAGGCTTCCA+TGG | - | chr3_3:49835612-49835631 | Msa0456310:three_prime_UTR | 35.0% | |
| TGTAATGAAGATTGCAACCA+TGG | + | chr3_3:49835632-49835651 | None:intergenic | 35.0% | |
| ACATTCTTCTACCTATGTTG+TGG | - | chr3_3:49835652-49835671 | Msa0456310:three_prime_UTR | 35.0% | |
| ! | TTGGATTTTATGAGCCTTAC+TGG | - | chr3_3:49835731-49835750 | Msa0456310:three_prime_UTR | 35.0% |
| TAGTATGTAACATGGGCATA+TGG | + | chr3_3:49835864-49835883 | None:intergenic | 35.0% | |
| !! | TCAAAAAAGTACCCTAACAG+TGG | - | chr3_3:49835971-49835990 | Msa0456310:CDS | 35.0% |
| ATCTCAAAAGCTGGTAATAG+AGG | + | chr3_3:49836028-49836047 | None:intergenic | 35.0% | |
| !! | AACCAAGTTCTAGGAGTATT+AGG | - | chr3_3:49836124-49836143 | Msa0456310:CDS | 35.0% |
| !! | AGCTATAAATTTCTGGCCAT+TGG | - | chr3_3:49836147-49836166 | Msa0456310:CDS | 35.0% |
| ACTGGGAAATATATAGCCAA+TGG | + | chr3_3:49836166-49836185 | None:intergenic | 35.0% | |
| GTACAAAGTACATCTCAACT+GGG | + | chr3_3:49836183-49836202 | None:intergenic | 35.0% | |
| TGTACAAAGTACATCTCAAC+TGG | + | chr3_3:49836184-49836203 | None:intergenic | 35.0% | |
| !! | GGATTTGTTGGATCATTTGA+AGG | - | chr3_3:49836283-49836302 | Msa0456310:CDS | 35.0% |
| ! | CTTTATTTGGGGTTGTACAT+TGG | - | chr3_3:49836368-49836387 | Msa0456310:five_prime_UTR | 35.0% |
| ! | GGTTTTCAGAGTTGTTAGAT+AGG | - | chr3_3:49836412-49836431 | Msa0456310:five_prime_UTR | 35.0% |
| TTCAGAGTTGTTAGATAGGT+AGG | - | chr3_3:49836416-49836435 | Msa0456310:five_prime_UTR | 35.0% | |
| TCAGAGTTGTTAGATAGGTA+GGG | - | chr3_3:49836417-49836436 | Msa0456310:five_prime_UTR | 35.0% | |
| CTGCATGATCTGTGATTATG+AGG | + | chr3_3:49833796-49833815 | None:intergenic | 40.0% | |
| ! | TCTGGTGCTTATGATGATGA+TGG | - | chr3_3:49834006-49834025 | Msa0456310:three_prime_UTR | 40.0% |
| !! | ATCACAGCAGTTATTGGTTC+CGG | - | chr3_3:49834168-49834187 | Msa0456310:three_prime_UTR | 40.0% |
| !! | AGAAATCCTGATTCGGTAAC+TGG | - | chr3_3:49834306-49834325 | Msa0456310:three_prime_UTR | 40.0% |
| !! | GAAATCCTGATTCGGTAACT+GGG | - | chr3_3:49834307-49834326 | Msa0456310:three_prime_UTR | 40.0% |
| AGGTCAGAAGAGAACATATG+TGG | - | chr3_3:49834453-49834472 | Msa0456310:intron | 40.0% | |
| AACTACATGCCCTTATTGCT+TGG | + | chr3_3:49834718-49834737 | None:intergenic | 40.0% | |
| ! | AAGCAATAAGGGCATGTAGT+TGG | - | chr3_3:49834717-49834736 | Msa0456310:intron | 40.0% |
| AGGTTACCACCATAACTACA+AGG | + | chr3_3:49835063-49835082 | None:intergenic | 40.0% | |
| ! | TCATTCATTGGACTAGGACT+CGG | - | chr3_3:49835189-49835208 | Msa0456310:three_prime_UTR | 40.0% |
| ! | AAGGTACCTGTATCTCAAGA+AGG | + | chr3_3:49835479-49835498 | None:intergenic | 40.0% |
| ATTGTTTGATTCTCTGGTGG+AGG | + | chr3_3:49835598-49835617 | None:intergenic | 40.0% | |
| TACCTATGTTGTGGTTGCTT+TGG | - | chr3_3:49835661-49835680 | Msa0456310:three_prime_UTR | 40.0% | |
| ATCCAAAGCAACCACAACAT+AGG | + | chr3_3:49835666-49835685 | None:intergenic | 40.0% | |
| !! | TGCTTTGGATATGCAGCTTT+TGG | - | chr3_3:49835676-49835695 | Msa0456310:three_prime_UTR | 40.0% |
| GCAATGTCAATAAGCCAGTA+AGG | + | chr3_3:49835748-49835767 | None:intergenic | 40.0% | |
| TCATTTGGTTGGAGGATATC+AGG | - | chr3_3:49835786-49835805 | Msa0456310:three_prime_UTR | 40.0% | |
| AGTTCACAAAGCCACTGTTA+GGG | + | chr3_3:49835985-49836004 | None:intergenic | 40.0% | |
| AAGTTCACAAAGCCACTGTT+AGG | + | chr3_3:49835986-49836005 | None:intergenic | 40.0% | |
| AGCTATGTGATTTCAACCAC+TGG | - | chr3_3:49836076-49836095 | Msa0456310:CDS | 40.0% | |
| CCTAGAACTTGGTTGAAGTA+AGG | + | chr3_3:49836118-49836137 | None:intergenic | 40.0% | |
| CCTTACTTCAACCAAGTTCT+AGG | - | chr3_3:49836115-49836134 | Msa0456310:CDS | 40.0% | |
| CTCCTAATACTCCTAGAACT+TGG | + | chr3_3:49836129-49836148 | None:intergenic | 40.0% | |
| TACAGAAGAAAGTTGGAGCT+TGG | - | chr3_3:49836200-49836219 | Msa0456310:intron | 40.0% | |
| ! | TTGGAGCTTGGACTAGAAAA+TGG | - | chr3_3:49836212-49836231 | Msa0456310:intron | 40.0% |
| CAAATCCAACCATTGTGACA+AGG | + | chr3_3:49836270-49836289 | None:intergenic | 40.0% | |
| GTCACAATGGTTGGATTTGT+TGG | - | chr3_3:49836271-49836290 | Msa0456310:CDS | 40.0% | |
| GATGGACATGCAAAAAGGAC+TGG | - | chr3_3:49834024-49834043 | Msa0456310:three_prime_UTR | 45.0% | |
| ! | TGGTTCCGGTGTTTTGTCTT+TGG | - | chr3_3:49834182-49834201 | Msa0456310:three_prime_UTR | 45.0% |
| CCATGCCAAAGACAAAACAC+CGG | + | chr3_3:49834190-49834209 | None:intergenic | 45.0% | |
| ACTGCTCAACTAGGATGGAT+TGG | - | chr3_3:49834213-49834232 | Msa0456310:three_prime_UTR | 45.0% | |
| GCACAACAAAGCAAGGTAAC+TGG | + | chr3_3:49834243-49834262 | None:intergenic | 45.0% | |
| ! | CTTTTCCCAGTTACCGAATC+AGG | + | chr3_3:49834315-49834334 | None:intergenic | 45.0% |
| !! | CTGATTCGGTAACTGGGAAA+AGG | - | chr3_3:49834313-49834332 | Msa0456310:three_prime_UTR | 45.0% |
| CTGACCTGAAAACCACTTTC+AGG | + | chr3_3:49834440-49834459 | None:intergenic | 45.0% | |
| CAGAAGAGAACATATGTGGC+TGG | - | chr3_3:49834457-49834476 | Msa0456310:intron | 45.0% | |
| GGCAACACTAGTTCCATACA+AGG | + | chr3_3:49834500-49834519 | None:intergenic | 45.0% | |
| GGAGAATTACCTCAAACTGG+TGG | + | chr3_3:49834539-49834558 | None:intergenic | 45.0% | |
| CATTAGCCATCGTGAGCTTA+TGG | - | chr3_3:49834915-49834934 | Msa0456310:three_prime_UTR | 45.0% | |
| CACCAAGCTCCTTGTAGTTA+TGG | - | chr3_3:49835051-49835070 | Msa0456310:intron | 45.0% | |
| CACCATAACTACAAGGAGCT+TGG | + | chr3_3:49835056-49835075 | None:intergenic | 45.0% | |
| CAAGCTCCTTGTAGTTATGG+TGG | - | chr3_3:49835054-49835073 | Msa0456310:intron | 45.0% | |
| CATACCGGATCTCCATAACA+TGG | - | chr3_3:49835125-49835144 | Msa0456310:three_prime_UTR | 45.0% | |
| CAAGCCATGTTATGGAGATC+CGG | + | chr3_3:49835132-49835151 | None:intergenic | 45.0% | |
| GGATCTCCATAACATGGCTT+GGG | - | chr3_3:49835131-49835150 | Msa0456310:three_prime_UTR | 45.0% | |
| CTGAAACCCAAGCCATGTTA+TGG | + | chr3_3:49835140-49835159 | None:intergenic | 45.0% | |
| GACAATTATTGTGGGACGGA+TGG | + | chr3_3:49835261-49835280 | None:intergenic | 45.0% | |
| TGGTTAATCTTCCAGGCACT+TGG | - | chr3_3:49835420-49835439 | Msa0456310:intron | 45.0% | |
| ACACCAGGAAATCTCTTGAC+AGG | - | chr3_3:49835706-49835725 | Msa0456310:three_prime_UTR | 45.0% | |
| CACCAGGAAATCTCTTGACA+GGG | - | chr3_3:49835707-49835726 | Msa0456310:three_prime_UTR | 45.0% | |
| AACCCTGTCAAGAGATTTCC+TGG | + | chr3_3:49835712-49835731 | None:intergenic | 45.0% | |
| GGAAATCTCTTGACAGGGTT+TGG | - | chr3_3:49835712-49835731 | Msa0456310:three_prime_UTR | 45.0% | |
| TGCTTGCTTCCTTGTCACAA+TGG | - | chr3_3:49836258-49836277 | Msa0456310:intron | 45.0% | |
| TGCTTCCTTGTCACAATGGT+TGG | - | chr3_3:49836262-49836281 | Msa0456310:intron | 45.0% | |
| ! | CCGGTGTTTTGTCTTTGGCA+TGG | - | chr3_3:49834187-49834206 | Msa0456310:three_prime_UTR | 50.0% |
| !! | GCATGGAGTACTGCTCAACT+AGG | - | chr3_3:49834204-49834223 | Msa0456310:three_prime_UTR | 50.0% |
| !! | GGAGTACTGCTCAACTAGGA+TGG | - | chr3_3:49834208-49834227 | Msa0456310:three_prime_UTR | 50.0% |
| !! | GCTCAACTAGGATGGATTGG+AGG | - | chr3_3:49834216-49834235 | Msa0456310:three_prime_UTR | 50.0% |
| TTACCACAGCCACCAGTTTG+AGG | - | chr3_3:49834527-49834546 | Msa0456310:three_prime_UTR | 50.0% | |
| TTACCTCAAACTGGTGGCTG+TGG | + | chr3_3:49834533-49834552 | None:intergenic | 50.0% | |
| CGGATCTCCATAACATGGCT+TGG | - | chr3_3:49835130-49835149 | Msa0456310:three_prime_UTR | 50.0% | |
| !! | GCTTTTGGAGATGCTACACC+AGG | - | chr3_3:49835691-49835710 | Msa0456310:three_prime_UTR | 50.0% |
| GGTGGCTGTGGTAAGTACAC+AGG | + | chr3_3:49834521-49834540 | None:intergenic | 55.0% | |
| AGGCAACATCACCAAGTGCC+TGG | + | chr3_3:49835434-49835453 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 49833772 | 49836543 | 49833772 | ID=Msa0456310;Name=Msa0456310 |
| chr3_3 | mRNA | 49833772 | 49836543 | 49833772 | ID=Msa0456310-mRNA-1;Parent=Msa0456310;Name=Msa0456310-mRNA-1;_AED=0.08;_eAED=0.08;_QI=198|1|1|1|0.8|0.66|6|1777|109 |
| chr3_3 | exon | 49833772 | 49834386 | 49833772 | ID=Msa0456310-mRNA-1:exon:9461;Parent=Msa0456310-mRNA-1 |
| chr3_3 | exon | 49834508 | 49834735 | 49834508 | ID=Msa0456310-mRNA-1:exon:9460;Parent=Msa0456310-mRNA-1 |
| chr3_3 | exon | 49834824 | 49834957 | 49834824 | ID=Msa0456310-mRNA-1:exon:9459;Parent=Msa0456310-mRNA-1 |
| chr3_3 | exon | 49835087 | 49835414 | 49835087 | ID=Msa0456310-mRNA-1:exon:9458;Parent=Msa0456310-mRNA-1 |
| chr3_3 | exon | 49835451 | 49836176 | 49835451 | ID=Msa0456310-mRNA-1:exon:9457;Parent=Msa0456310-mRNA-1 |
| chr3_3 | exon | 49836270 | 49836543 | 49836270 | ID=Msa0456310-mRNA-1:exon:9456;Parent=Msa0456310-mRNA-1 |
| chr3_3 | five_prime_UTR | 49836346 | 49836543 | 49836346 | ID=Msa0456310-mRNA-1:five_prime_utr;Parent=Msa0456310-mRNA-1 |
| chr3_3 | CDS | 49836270 | 49836345 | 49836270 | ID=Msa0456310-mRNA-1:cds;Parent=Msa0456310-mRNA-1 |
| chr3_3 | CDS | 49835923 | 49836176 | 49835923 | ID=Msa0456310-mRNA-1:cds;Parent=Msa0456310-mRNA-1 |
| chr3_3 | three_prime_UTR | 49835451 | 49835922 | 49835451 | ID=Msa0456310-mRNA-1:three_prime_utr;Parent=Msa0456310-mRNA-1 |
| chr3_3 | three_prime_UTR | 49835087 | 49835414 | 49835087 | ID=Msa0456310-mRNA-1:three_prime_utr;Parent=Msa0456310-mRNA-1 |
| chr3_3 | three_prime_UTR | 49834824 | 49834957 | 49834824 | ID=Msa0456310-mRNA-1:three_prime_utr;Parent=Msa0456310-mRNA-1 |
| chr3_3 | three_prime_UTR | 49834508 | 49834735 | 49834508 | ID=Msa0456310-mRNA-1:three_prime_utr;Parent=Msa0456310-mRNA-1 |
| chr3_3 | three_prime_UTR | 49833772 | 49834386 | 49833772 | ID=Msa0456310-mRNA-1:three_prime_utr;Parent=Msa0456310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
