AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0364530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0364530 MtrunA17_Chr3g0103231 96.976 463 14 0 1 463 1 463 0.0 926
Msa0364530 MtrunA17_Chr3g0103211 86.087 460 64 0 1 460 1 460 0.0 839
Msa0364530 MtrunA17_Chr3g0103221 82.729 469 74 2 1 462 1 469 0.0 806
Msa0364530 MtrunA17_Chr5g0447221 71.526 439 123 2 23 460 29 466 0.0 668
Msa0364530 MtrunA17_Chr3g0103251 86.313 358 20 1 135 463 19 376 0.0 634
Msa0364530 MtrunA17_Chr3g0103271 54.348 460 206 2 2 460 9 465 0.0 530
Msa0364530 MtrunA17_Chr3g0125091 53.201 453 211 1 6 457 17 469 0.0 528
Msa0364530 MtrunA17_Chr3g0125081 52.655 452 214 0 6 457 17 468 0.0 525
Msa0364530 MtrunA17_Chr8g0384661 53.034 445 204 2 15 457 42 483 0.0 524
Msa0364530 MtrunA17_Chr3g0125101 52.318 453 215 1 6 457 17 469 0.0 518
Msa0364530 MtrunA17_Chr1g0159761 53.899 436 198 2 10 442 14 449 3.30e-178 507
Msa0364530 MtrunA17_Chr4g0037201 49.890 453 219 1 13 457 49 501 2.06e-176 504
Msa0364530 MtrunA17_Chr3g0140761 50.216 464 221 3 4 457 8 471 4.72e-175 499
Msa0364530 MtrunA17_Chr5g0447231 52.968 438 205 1 23 459 25 462 3.57e-170 486
Msa0364530 MtrunA17_Chr1g0146491 49.661 443 219 2 16 454 16 458 1.13e-169 485
Msa0364530 MtrunA17_Chr3g0130641 49.550 444 219 2 16 457 26 466 1.01e-163 470
Msa0364530 MtrunA17_Chr3g0130651 51.643 426 199 3 11 434 14 434 2.13e-159 459
Msa0364530 MtrunA17_Chr1g0206871 47.640 445 220 3 23 455 15 458 1.25e-155 449
Msa0364530 MtrunA17_Chr3g0140531 43.601 461 255 3 1 457 1 460 1.37e-142 416
Msa0364530 MtrunA17_Chr1g0146411 42.694 438 244 3 17 453 27 458 3.96e-136 400
Msa0364530 MtrunA17_Chr3g0140541 43.848 447 249 2 9 454 11 456 7.93e-135 397
Msa0364530 MtrunA17_Chr1g0146331 42.308 442 248 4 17 454 14 452 7.51e-133 391
Msa0364530 MtrunA17_Chr2g0293331 42.697 445 249 3 16 457 5 446 2.92e-132 389
Msa0364530 MtrunA17_Chr1g0146391 40.724 442 256 3 17 455 6 444 4.89e-128 379
Msa0364530 MtrunA17_Chr1g0206851 47.126 348 172 3 115 457 30 370 9.56e-116 345
Msa0364530 MtrunA17_Chr1g0206831 48.171 328 158 3 135 457 13 333 3.28e-111 332
Msa0364530 MtrunA17_Chr5g0402151 49.829 293 116 4 26 318 3 264 9.32e-96 290
Msa0364530 MtrunA17_Chr3g0103261 97.037 135 4 0 1 135 1 135 1.33e-88 267
Msa0364530 MtrunA17_Chr1g0206821 53.555 211 98 0 247 457 310 520 8.70e-79 254
Msa0364530 MtrunA17_Chr1g0206821 46.063 254 128 3 7 251 1 254 1.55e-72 238
Msa0364530 MtrunA17_Chr3g0130671 49.130 230 113 2 1 228 19 246 2.82e-69 222
Msa0364530 MtrunA17_Chr3g0130661 50.296 169 81 1 286 454 2 167 1.17e-56 186
Msa0364530 MtrunA17_Chr6g0458931 28.878 419 257 11 22 432 41 426 8.18e-45 162
Msa0364530 MtrunA17_Chr4g0057851 29.384 422 248 12 22 429 2 387 2.27e-43 158
Msa0364530 MtrunA17_Chr8g0376991 27.729 458 294 9 5 457 3 428 1.82e-42 155
Msa0364530 MtrunA17_Chr2g0331721 27.934 426 269 10 10 429 32 425 1.17e-41 154
Msa0364530 MtrunA17_Chr5g0422741 28.251 446 284 10 18 460 22 434 1.22e-39 148
Msa0364530 MtrunA17_Chr3g0122921 26.906 446 269 13 22 462 32 425 1.87e-36 139
Msa0364530 MtrunA17_Chr1g0198531 27.033 455 290 10 10 458 12 430 9.81e-36 137
Msa0364530 MtrunA17_Chr7g0230011 28.045 353 220 8 10 344 3 339 5.51e-35 135
Msa0364530 MtrunA17_Chr1g0206841 57.143 105 43 1 1 105 1 103 4.28e-33 120
Msa0364530 MtrunA17_Chr6g0459011 27.400 427 265 10 39 457 1 390 6.08e-33 129
Msa0364530 MtrunA17_Chr6g0459021 27.336 428 274 9 34 457 45 439 1.43e-32 128
Msa0364530 MtrunA17_Chr3g0077651 28.763 372 234 9 22 390 51 394 3.75e-32 127
Msa0364530 MtrunA17_Chr6g0459031 27.747 364 225 10 34 392 25 355 1.02e-31 125
Msa0364530 MtrunA17_Chr6g0458921 26.196 397 246 11 1 392 1 355 1.56e-31 125
Msa0364530 MtrunA17_Chr1g0198541 26.730 419 266 9 19 431 20 403 3.62e-31 124
Msa0364530 MtrunA17_Chr1g0184721 25.000 452 297 14 14 457 13 430 6.07e-31 124
Msa0364530 MtrunA17_Chr1g0206861 59.783 92 37 0 16 107 14 105 1.46e-30 115
Msa0364530 MtrunA17_Chr2g0328081 27.807 374 234 9 18 387 9 350 2.08e-30 122
Msa0364530 MtrunA17_Chr6g0459001 29.766 299 190 7 34 328 33 315 2.93e-30 122
Msa0364530 MtrunA17_Chr1g0198081 25.888 394 258 11 34 421 70 435 6.41e-27 113
Msa0364530 MtrunA17_Chr4g0027241 27.381 420 265 15 4 413 19 408 3.44e-25 107
Msa0364530 MtrunA17_Chr1g0146351 50.000 98 48 1 34 131 14 110 5.37e-25 99.4
Msa0364530 MtrunA17_Chr4g0038711 24.634 410 273 10 24 421 71 456 1.81e-24 105
Msa0364530 MtrunA17_Chr8g0387941 25.942 451 291 16 17 456 18 436 3.99e-22 98.6
Msa0364530 MtrunA17_Chr3g0143701 22.646 446 304 14 22 455 83 499 1.38e-19 91.3
Msa0364530 MtrunA17_Chr1g0159751 61.538 52 20 0 264 315 1 52 4.09e-16 73.2
Msa0364530 MtrunA17_Chr4g0058161 25.182 413 257 16 54 457 71 440 4.45e-16 80.1
Msa0364530 MtrunA17_Chr2g0281341 24.234 359 242 9 23 360 95 444 4.95e-15 77.4
Msa0364530 MtrunA17_Chr5g0436281 24.051 395 256 11 54 442 4 360 9.13e-15 75.9
Msa0364530 MtrunA17_Chr5g0406331 22.493 369 245 9 24 365 87 441 6.16e-12 67.8
Msa0364530 MtrunA17_Chr3g0112971 25.872 344 203 14 89 421 88 390 2.71e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0364530 AT1G77380.1 54.483 435 196 1 10 442 16 450 0.0 519
Msa0364530 AT5G23810.1 59.101 445 177 3 19 458 21 465 0.0 518
Msa0364530 AT5G09220.1 52.360 445 209 2 16 457 38 482 0.0 517
Msa0364530 AT5G63850.1 52.360 445 209 2 16 457 11 455 1.00e-178 508
Msa0364530 AT1G44100.1 52.412 456 205 3 12 457 16 469 1.74e-176 503
Msa0364530 AT1G10010.1 49.787 470 227 3 1 462 1 469 1.35e-173 496
Msa0364530 AT1G10010.2 49.787 470 227 3 1 462 2 470 1.35e-173 496
Msa0364530 AT1G58360.1 47.817 458 234 2 2 455 15 471 1.55e-168 483
Msa0364530 AT5G49630.1 48.571 455 229 3 8 457 17 471 2.49e-165 475
Msa0364530 AT5G23810.2 60.692 318 122 2 19 333 21 338 1.46e-130 382
Msa0364530 AT5G23810.4 55.508 236 102 2 19 251 21 256 4.68e-86 265
Msa0364530 AT5G23810.5 54.974 191 83 2 19 206 21 211 2.80e-64 207
Msa0364530 AT5G23810.3 54.974 191 83 2 19 206 21 211 2.80e-64 207
Msa0364530 AT1G61270.1 26.923 442 282 8 22 456 32 439 7.15e-42 155
Msa0364530 AT5G40780.1 26.559 433 274 11 34 458 44 440 1.47e-38 145
Msa0364530 AT3G01760.1 25.694 432 284 12 22 446 30 431 1.98e-38 145
Msa0364530 AT1G24400.1 27.674 430 266 12 34 455 39 431 1.73e-36 140
Msa0364530 AT5G40780.3 26.168 428 272 11 39 458 1 392 2.55e-36 138
Msa0364530 AT5G40780.2 26.168 428 272 11 39 458 1 392 2.55e-36 138
Msa0364530 AT1G48640.1 26.573 429 276 9 34 459 51 443 9.59e-36 138
Msa0364530 AT1G25530.1 27.473 455 293 10 8 458 12 433 1.46e-34 134
Msa0364530 AT1G67640.1 27.506 429 268 9 34 455 39 431 4.11e-34 133
Msa0364530 AT1G71680.2 29.573 328 208 7 22 343 33 343 3.20e-31 124
Msa0364530 AT1G71680.1 27.536 414 260 9 22 429 33 412 2.63e-30 122
Msa0364530 AT1G08230.2 26.750 400 233 15 34 413 38 397 2.81e-17 84.3
Msa0364530 AT2G39890.2 24.566 403 244 17 54 442 63 419 1.53e-16 82.0
Msa0364530 AT2G39890.1 24.566 403 244 17 54 442 63 419 1.53e-16 82.0
Msa0364530 AT2G39890.3 24.566 403 244 17 54 442 4 360 2.44e-16 80.9
Msa0364530 AT2G36590.1 23.577 369 246 10 54 421 57 390 6.94e-15 77.0
Msa0364530 AT4G35180.1 25.180 278 192 7 23 297 57 321 7.52e-12 67.8
Msa0364530 AT4G35180.2 25.794 252 171 7 23 271 57 295 2.20e-11 65.5

Find 128 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATAATGATTTACTTTAAT+TGG 0.059888 3_1:-57684971 Msa0364530:three_prime_UTR
GATAGGGATTAAGATATTTA+AGG 0.177898 3_1:-57684897 Msa0364530:three_prime_UTR
CCTTACTTCAACCAAGTTCT+AGG 0.184744 3_1:-57685212 Msa0364530:CDS
TGCAGAAAATGGAAGAATTA+TGG 0.189183 3_1:-57686449 Msa0364530:intron
CTTATCTGCATATAAAATTA+TGG 0.193214 3_1:+57688407 None:intergenic
CATATCATCACAGCTGTTAT+TGG 0.233094 3_1:-57687602 Msa0364530:CDS
TTGAATTTGAATCATATTCT+TGG 0.237090 3_1:-57687829 Msa0364530:five_prime_UTR
GTATGGTTAACATTTAATTT+TGG 0.238713 3_1:-57684808 Msa0364530:three_prime_UTR
TATTGGGAGCTATAAATTTC+TGG 0.241934 3_1:-57685187 Msa0364530:CDS
ATTAAAGTAAATCATTATTA+AGG 0.244180 3_1:+57684974 None:intergenic
TGAGCTTGTATATTATTAAA+TGG 0.246320 3_1:+57684856 None:intergenic
AGAAATCCTGATTCTGTAAC+TGG 0.252687 3_1:-57687458 Msa0364530:CDS
TTGGAGCTTGGACTAGAAAA+TGG 0.253711 3_1:-57685115 Msa0364530:CDS
TGCTTTGGATATGCAGCTTT+TGG 0.275745 3_1:-57686121 Msa0364530:CDS
TCAATACAATTATGAACTTT+TGG 0.277087 3_1:+57684773 None:intergenic
TTCTATAACAATCAGATAAA+AGG 0.296542 3_1:+57687477 None:intergenic
GGAAATCTCTTGACAGGGTT+TGG 0.296932 3_1:-57686085 Msa0364530:CDS
AAATTGGTTCAGGTAATAAA+AGG 0.299928 3_1:-57687295 Msa0364530:intron
TCATTTGGTTGGAGGATATC+AGG 0.300513 3_1:-57686011 Msa0364530:intron
CTTCAAATTACAAAAGCTTC+TGG 0.300739 3_1:-57687782 Msa0364530:CDS
AATAATGATTTACTTTAATT+GGG 0.302451 3_1:-57684970 Msa0364530:three_prime_UTR
AGAGAATCAAACAATGAAAA+AGG 0.309261 3_1:-57686194 Msa0364530:CDS
TACCTATGCTGTGGTTGCTT+TGG 0.317188 3_1:-57686136 Msa0364530:CDS
CTAGAAAATGGATTGTTCTA+AGG 0.318873 3_1:-57685103 Msa0364530:CDS
TCCTTTACATACTCATTCAT+TGG 0.319715 3_1:-57686627 Msa0364530:CDS
ATCACAGCTGTTATTGGTTC+TGG 0.321085 3_1:-57687596 Msa0364530:CDS
CTATCAGCTGTACTATATAT+TGG 0.330424 3_1:+57685386 None:intergenic
TGTACAAAGTACATTTCAAC+TGG 0.334153 3_1:+57685146 None:intergenic
TCAAGAAGGATAATTGAATA+TGG 0.335571 3_1:+57686340 None:intergenic
AGTAGAGACAGCAGAAAATC+AGG 0.335676 3_1:+57688350 None:intergenic
CTAAAGTTGCTGACAAAATC+TGG 0.337495 3_1:-57686402 Msa0364530:CDS
CAAAATCTGGTTAATCTTCC+AGG 0.338409 3_1:-57686389 Msa0364530:CDS
GTCACAATGGTTGGATTTGT+TGG 0.343475 3_1:-57685056 Msa0364530:CDS
TATAGTAATTATATAGGCTT+GGG 0.349456 3_1:+57688432 None:intergenic
AACCCTGTCAAGAGATTTCC+TGG 0.353548 3_1:+57686088 None:intergenic
ATGGCTTATAGTAATTATAT+AGG 0.354565 3_1:+57688426 None:intergenic
GCAGAAAATGGAAGAATTAT+GGG 0.355246 3_1:-57686448 Msa0364530:intron
AACCAAGTTCTAGGAGTATT+GGG 0.356017 3_1:-57685203 Msa0364530:CDS
AGAATTATGGGAAGTATAAC+AGG 0.360907 3_1:-57686436 Msa0364530:CDS
AATTATCCTTCTTGAGATAC+AGG 0.364268 3_1:-57686332 Msa0364530:intron
ATAGGGATTAAGATATTTAA+GGG 0.366816 3_1:-57684896 Msa0364530:three_prime_UTR
CAACCAAGTTCTAGGAGTAT+TGG 0.368080 3_1:-57685204 Msa0364530:CDS
TGCTTCCTTGTCACAATGGT+TGG 0.382618 3_1:-57685065 Msa0364530:CDS
TGTTTGTATTATCATTCATT+TGG 0.384293 3_1:-57686026 Msa0364530:CDS
GCATGGAGTACTGCTCAATT+AGG 0.392253 3_1:-57687560 Msa0364530:CDS
TCTCTACTCTCAAGGAAATC+TGG 0.393338 3_1:-57688335 Msa0364530:intron
ATAGAGGAAGTTTCACTTTG+TGG 0.396172 3_1:+57685318 None:intergenic
AATATATATATGGTGCTGTT+TGG 0.398778 3_1:-57686726 Msa0364530:CDS
TAACTCCCTTCATAATTGTA+TGG 0.420579 3_1:-57684825 Msa0364530:three_prime_UTR
GGATCTCCATAACTTGGCTT+GGG 0.421014 3_1:-57686673 Msa0364530:CDS
TGTATTATCATTCATTTGGT+TGG 0.421033 3_1:-57686022 Msa0364530:CDS
CTGAAACCCAAGCCAAGTTA+TGG 0.421752 3_1:+57686667 None:intergenic
ATGATGACGGACATGCAAAA+AGG 0.422456 3_1:-57687751 Msa0364530:CDS
AGAGAGAAAATTAGTGGAAA+AGG 0.426706 3_1:-57685014 Msa0364530:CDS
TACAGAAGAAAGTTGGAGCT+TGG 0.429896 3_1:-57685127 Msa0364530:CDS
TCGTTCACAAAGCCACTGTT+GGG 0.433351 3_1:+57685344 None:intergenic
CGGATCTCCATAACTTGGCT+TGG 0.438990 3_1:-57686674 Msa0364530:CDS
GGATTTGTTGGATCATTTGA+AGG 0.441279 3_1:-57685044 Msa0364530:CDS
ATCATAAGAGAGAAAATTAG+TGG 0.441440 3_1:-57685020 Msa0364530:CDS
ATTGTTTGATTCTCTGGTGG+AGG 0.441973 3_1:+57686202 None:intergenic
AACTAATGTCACCAAGTGCC+TGG 0.445133 3_1:+57686371 None:intergenic
AGAATATGATTCAAATTCAA+TGG 0.447370 3_1:+57687832 None:intergenic
AGCTATAAATTTCTGGCCAT+TGG 0.449959 3_1:-57685180 Msa0364530:CDS
TATATAGTACAGCTGATAGA+TGG 0.451887 3_1:-57685382 Msa0364530:CDS
GACAGCAGAAAATCAGGAAA+AGG 0.453140 3_1:+57688356 None:intergenic
ATATGAGGCTAATATATATA+TGG 0.460365 3_1:-57686736 Msa0364530:CDS
CCTAGAACTTGGTTGAAGTA+AGG 0.463113 3_1:+57685212 None:intergenic
CTTTAATTGGGGTTGTACAT+TGG 0.465269 3_1:-57684958 Msa0364530:three_prime_UTR
TTATAGTAATTATATAGGCT+TGG 0.466701 3_1:+57688431 None:intergenic
TGCTTGCTTCCTTGTCACAA+TGG 0.469755 3_1:-57685069 Msa0364530:CDS
ATCTCAAAAGAAGGTAATAG+AGG 0.469814 3_1:+57685302 None:intergenic
GCACAACAAAGCAAGAAAAC+TGG 0.471757 3_1:+57687524 None:intergenic
GATGCTGTTAGAGTTAATCT+TGG 0.473459 3_1:-57687413 Msa0364530:intron
TTCATTGTTTGATTCTCTGG+TGG 0.473763 3_1:+57686199 None:intergenic
CCAAGCTCCTTGTAGATATG+AGG 0.477208 3_1:-57686751 Msa0364530:CDS
ACACCAGGAAATCTCTTGAC+AGG 0.477743 3_1:-57686091 Msa0364530:CDS
ATTATCATTCATTTGGTTGG+AGG 0.478152 3_1:-57686019 Msa0364530:CDS
CTCCCAATACTCCTAGAACT+TGG 0.478581 3_1:+57685201 None:intergenic
ACTGCTCAATTAGGATGGAT+TGG 0.481783 3_1:-57687551 Msa0364530:CDS
CATACCGGATCTCCATAACT+TGG 0.488256 3_1:-57686679 Msa0364530:CDS
TACTTTGTACAGAAGAAAGT+TGG 0.497035 3_1:-57685134 Msa0364530:CDS
TGTTAACCATACAATTATGA+AGG 0.497080 3_1:+57684819 None:intergenic
TGGTTAATCTTCCAGGCACT+TGG 0.501530 3_1:-57686382 Msa0364530:CDS
TCAAATTGCTATCATAAAGA+AGG 0.504054 3_1:-57686777 Msa0364530:CDS
TTCTGCTGTCTCTACTCTCA+AGG 0.512897 3_1:-57688343 Msa0364530:five_prime_UTR
GGATTAAGATATTTAAGGGA+TGG 0.513676 3_1:-57684892 Msa0364530:three_prime_UTR
GATTGTAATGTCGTTCATAC+CGG 0.514727 3_1:-57686694 Msa0364530:CDS
TCCAATGAATGAGTATGTAA+AGG 0.518895 3_1:+57686626 None:intergenic
AAAAGATTTATCTCAAAAGA+AGG 0.519229 3_1:+57685293 None:intergenic
ATCGTTCACAAAGCCACTGT+TGG 0.519554 3_1:+57685343 None:intergenic
ACAGGAGAAGTACTTCAAAC+TGG 0.523712 3_1:+57687199 None:intergenic
GCAGATAAGAACATTTGCAT+TGG 0.525579 3_1:-57688393 Msa0364530:five_prime_UTR
ATGAATGATAATACAAACAT+TGG 0.532293 3_1:+57686030 None:intergenic
CAAGCCAAGTTATGGAGATC+CGG 0.534080 3_1:+57686675 None:intergenic
GCAATGTCAATAAGCCAGTA+AGG 0.536074 3_1:+57686052 None:intergenic
GAAAAGAAACTACTCTTACA+TGG 0.536174 3_1:-57687435 Msa0364530:CDS
AAGGATAATTGAATATGGAT+AGG 0.542619 3_1:+57686345 None:intergenic
TCATTCATTGGACTAGGACT+TGG 0.543159 3_1:-57686615 Msa0364530:CDS
AATAAAAGGACTTATGTGGC+TGG 0.543815 3_1:-57687281 Msa0364530:CDS
GTACTTCAAACTGGTGGCTG+TGG 0.546800 3_1:+57687208 None:intergenic
CCTCATATCTACAAGGAGCT+TGG 0.548780 3_1:+57686751 None:intergenic
GGATGAATGTGCTTCTAAAG+TGG 0.550000 3_1:+57684747 None:intergenic
ATAATGATTTACTTTAATTG+GGG 0.555060 3_1:-57684969 Msa0364530:three_prime_UTR
AGCTATGTGATTTCAACCAC+TGG 0.557700 3_1:-57685251 Msa0364530:CDS
TTCATGTAATGTAATAGTAG+TGG 0.561614 3_1:-57684935 Msa0364530:three_prime_UTR
ACATACTCATTCATTGGACT+AGG 0.574709 3_1:-57686621 Msa0364530:CDS
GGAGTACTGCTCAATTAGGA+TGG 0.581347 3_1:-57687556 Msa0364530:CDS
AGGTAATAAAAGGACTTATG+TGG 0.583654 3_1:-57687285 Msa0364530:CDS
CACCAGGAAATCTCTTGACA+GGG 0.588202 3_1:-57686090 Msa0364530:CDS
GAAATCCTGATTCTGTAACT+GGG 0.591659 3_1:-57687457 Msa0364530:CDS
GCTCAATTAGGATGGATTGG+AGG 0.591982 3_1:-57687548 Msa0364530:CDS
AAGGTACCTGTATCTCAAGA+AGG 0.593264 3_1:+57686326 None:intergenic
ACTGGGAAATATATAGCCAA+TGG 0.596364 3_1:+57685164 None:intergenic
GTTAACCATACAATTATGAA+GGG 0.601537 3_1:+57684820 None:intergenic
TGTAATGAAGATTGCAACCA+TGG 0.609614 3_1:+57686168 None:intergenic
ACATTCTTCTACCTATGCTG+TGG 0.617044 3_1:-57686145 Msa0364530:CDS
ATAGTAATTATATAGGCTTG+GGG 0.622670 3_1:+57688433 None:intergenic
ATCCAAAGCAACCACAGCAT+AGG 0.628125 3_1:+57686134 None:intergenic
ATATTAGCCTCATATCTACA+AGG 0.637550 3_1:+57686744 None:intergenic
GGCAACACTAGTCCCATACA+AGG 0.638874 3_1:+57687241 None:intergenic
CAAATCCAACCATTGTGACA+AGG 0.640388 3_1:+57685060 None:intergenic
CGTTCACAAAGCCACTGTTG+GGG 0.646020 3_1:+57685345 None:intergenic
TCTGGTGCTTATGATGATGA+CGG 0.661065 3_1:-57687764 Msa0364530:CDS
AAATAAAATTGCTAGTCCAG+TGG 0.662970 3_1:+57685235 None:intergenic
GGTGGCTGTGGTGAGTACAT+AGG 0.663546 3_1:+57687220 None:intergenic
TAGTAATTATATAGGCTTGG+GGG 0.673303 3_1:+57688434 None:intergenic
GGAGAAGTACTTCAAACTGG+TGG 0.678265 3_1:+57687202 None:intergenic
GTACAAAGTACATTTCAACT+GGG 0.683822 3_1:+57685147 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+AGG + chr3_1:57685187-57685206 None:intergenic 0.0%
!!! ATATTTATTGTACTAATTTT+AGG - chr3_1:57686241-57686260 Msa0364530:intron 10.0%
!! CACTAAAATTATTAAATAAA+TGG - chr3_1:57687576-57687595 Msa0364530:CDS 10.0%
!!! ATTATTGTTTTTAATCTATA+TGG - chr3_1:57687761-57687780 Msa0364530:CDS 10.0%
!! ATTAAAGTAAATCATTATTA+AGG + chr3_1:57688226-57688245 None:intergenic 10.0%
!! TAATAATGATTTACTTTAAT+TGG - chr3_1:57688226-57688245 Msa0364530:intron 10.0%
!! AATAATGATTTACTTTAATT+GGG - chr3_1:57688227-57688246 Msa0364530:intron 10.0%
!! TCAATATTAATCAATATGTT+AGG + chr3_1:57684982-57685001 None:intergenic 15.0%
!! TGTATATGAAAAAAATGAAT+TGG + chr3_1:57685520-57685539 None:intergenic 15.0%
!!! ATTCATTTTTTTCATATACA+TGG - chr3_1:57685520-57685539 Msa0364530:intron 15.0%
!! TTTATTGTACTAATTAATAC+AGG - chr3_1:57686385-57686404 Msa0364530:CDS 15.0%
!! TTATTGTACTAATTAATACA+GGG - chr3_1:57686386-57686405 Msa0364530:CDS 15.0%
!!! AATTACTAGTGAATTTTAAT+TGG + chr3_1:57687231-57687250 None:intergenic 15.0%
!!! TTTAATAATTTTAGTGAAGT+CGG + chr3_1:57687572-57687591 None:intergenic 15.0%
!! ATAATGATTTACTTTAATTG+GGG - chr3_1:57688228-57688247 Msa0364530:intron 15.0%
!! TATAGTAATTATATAGGCTT+GGG + chr3_1:57684768-57684787 None:intergenic 20.0%
!! TTATAGTAATTATATAGGCT+TGG + chr3_1:57684769-57684788 None:intergenic 20.0%
!! ATGGCTTATAGTAATTATAT+AGG + chr3_1:57684774-57684793 None:intergenic 20.0%
!! CTTATCTGCATATAAAATTA+TGG + chr3_1:57684793-57684812 None:intergenic 20.0%
!!! TATGGACATTTAATAACTTT+TGG + chr3_1:57684938-57684957 None:intergenic 20.0%
!! ATATTAATCAATATGTTAGG+TGG + chr3_1:57684979-57684998 None:intergenic 20.0%
!! ATAAACAACAAAGATAAACT+AGG + chr3_1:57685302-57685321 None:intergenic 20.0%
!! AGAATATGATTCAAATTCAA+TGG + chr3_1:57685368-57685387 None:intergenic 20.0%
!! TTGAATTTGAATCATATTCT+TGG - chr3_1:57685368-57685387 Msa0364530:CDS 20.0%
!! ATCATATTCTTGGATAAAAA+TGG - chr3_1:57685378-57685397 Msa0364530:CDS 20.0%
!! TTCTATAACAATCAGATAAA+AGG + chr3_1:57685723-57685742 None:intergenic 20.0%
!!! ATTTGAAGTTATAACTGTTA+TGG + chr3_1:57685886-57685905 None:intergenic 20.0%
!! TAACAGTTATAACTTCAAAT+TGG - chr3_1:57685886-57685905 Msa0364530:intron 20.0%
!! ATAAATATGTATCATTAGCT+TGG + chr3_1:57686229-57686248 None:intergenic 20.0%
!!! TAATTTTAGGTAGTTTGTTT+GGG - chr3_1:57686254-57686273 Msa0364530:intron 20.0%
!! ATATGAGGCTAATATATATA+TGG - chr3_1:57686461-57686480 Msa0364530:intron 20.0%
!! ATTTGAATATGAAAAGTCTA+AGG + chr3_1:57686893-57686912 None:intergenic 20.0%
!! ATGAATGATAATACAAACAT+TGG + chr3_1:57687170-57687189 None:intergenic 20.0%
!! TGTTTGTATTATCATTCATT+TGG - chr3_1:57687171-57687190 Msa0364530:intron 20.0%
!!! TAGTGAATTTTAATTGGTAA+GGG + chr3_1:57687225-57687244 None:intergenic 20.0%
!! TTAAGTTATGATGAATCAAA+AGG + chr3_1:57687276-57687295 None:intergenic 20.0%
!! AAAAGATTTATCTCAAAAGA+AGG + chr3_1:57687907-57687926 None:intergenic 20.0%
!! ATAGGGATTAAGATATTTAA+GGG - chr3_1:57688301-57688320 Msa0364530:intron 20.0%
!! TGAGCTTGTATATTATTAAA+TGG + chr3_1:57688344-57688363 None:intergenic 20.0%
!!! GTATGGTTAACATTTAATTT+TGG - chr3_1:57688389-57688408 Msa0364530:five_prime_UTR 20.0%
!!! TCAATACAATTATGAACTTT+TGG + chr3_1:57688427-57688446 None:intergenic 20.0%
! ATAGTAATTATATAGGCTTG+GGG + chr3_1:57684767-57684786 None:intergenic 25.0%
! AGTAAGTAGATGATGAAATA+TGG + chr3_1:57684956-57684975 None:intergenic 25.0%
! TTAATAAAAAGAACAGCACA+TGG + chr3_1:57685073-57685092 None:intergenic 25.0%
! TATTCTTGGATAAAAATGGA+TGG - chr3_1:57685382-57685401 Msa0364530:CDS 25.0%
! ATTCTTGGATAAAAATGGAT+GGG - chr3_1:57685383-57685402 Msa0364530:CDS 25.0%
!!! TATTGAATATTTGTTTCTGC+AGG - chr3_1:57685550-57685569 Msa0364530:intron 25.0%
!! TTATAACTTCAAATTGGTTC+AGG - chr3_1:57685892-57685911 Msa0364530:intron 25.0%
!! AAATTGGTTCAGGTAATAAA+AGG - chr3_1:57685902-57685921 Msa0364530:intron 25.0%
!! TTCAATTTTTGACCTTGTAT+GGG - chr3_1:57685944-57685963 Msa0364530:intron 25.0%
!! GACTTATTTCCTTTTCTTTT+AGG - chr3_1:57686043-57686062 Msa0364530:CDS 25.0%
!!! GCTATTTCTATATAGAACAA+AGG - chr3_1:57686108-57686127 Msa0364530:CDS 25.0%
!!! CTAATTTTAGGTAGTTTGTT+TGG - chr3_1:57686253-57686272 Msa0364530:intron 25.0%
!!! AATTTTAGGTAGTTTGTTTG+GGG - chr3_1:57686255-57686274 Msa0364530:intron 25.0%
! TCAAATTGCTATCATAAAGA+AGG - chr3_1:57686420-57686439 Msa0364530:CDS 25.0%
!!! AATATATATATGGTGCTGTT+TGG - chr3_1:57686471-57686490 Msa0364530:intron 25.0%
! ATTGTTGTGACAATTATTGT+GGG + chr3_1:57686663-57686682 None:intergenic 25.0%
! AATTGTTGTGACAATTATTG+TGG + chr3_1:57686664-57686683 None:intergenic 25.0%
! AAGGATAATTGAATATGGAT+AGG + chr3_1:57686855-57686874 None:intergenic 25.0%
! TCAAGAAGGATAATTGAATA+TGG + chr3_1:57686860-57686879 None:intergenic 25.0%
! TATTGAATTATGTTGAGAAC+AGG - chr3_1:57686958-57686977 Msa0364530:intron 25.0%
!! TTTTTCATTGTTTGATTCTC+TGG + chr3_1:57687004-57687023 None:intergenic 25.0%
! AGAGAATCAAACAATGAAAA+AGG - chr3_1:57687003-57687022 Msa0364530:intron 25.0%
! TGTATTATCATTCATTTGGT+TGG - chr3_1:57687175-57687194 Msa0364530:intron 25.0%
!!! CTAGTGAATTTTAATTGGTA+AGG + chr3_1:57687226-57687245 None:intergenic 25.0%
!! ACTTCATTGAAACTTTTGAA+AGG - chr3_1:57687392-57687411 Msa0364530:intron 25.0%
!!! CTTCATTGAAACTTTTGAAA+GGG - chr3_1:57687393-57687412 Msa0364530:intron 25.0%
! CAAATAACAAAACATAGCAT+AGG + chr3_1:57687703-57687722 None:intergenic 25.0%
!!! CTTTTGAGATAAATCTTTTC+AGG - chr3_1:57687908-57687927 Msa0364530:intron 25.0%
! ATCATAAGAGAGAAAATTAG+TGG - chr3_1:57688177-57688196 Msa0364530:intron 25.0%
! TTCATGTAATGTAATAGTAG+TGG - chr3_1:57688262-57688281 Msa0364530:intron 25.0%
! GATAGGGATTAAGATATTTA+AGG - chr3_1:57688300-57688319 Msa0364530:intron 25.0%
! GTTAACCATACAATTATGAA+GGG + chr3_1:57688380-57688399 None:intergenic 25.0%
! TGTTAACCATACAATTATGA+AGG + chr3_1:57688381-57688400 None:intergenic 25.0%
TAGTAATTATATAGGCTTGG+GGG + chr3_1:57684766-57684785 None:intergenic 30.0%
ATGCTAAAAACATGTCTGTT+TGG + chr3_1:57685016-57685035 None:intergenic 30.0%
! GTAAGATTGTTTGATAGTTC+AGG + chr3_1:57685051-57685070 None:intergenic 30.0%
TGTATACGTTTGGTATGTAT+GGG + chr3_1:57685161-57685180 None:intergenic 30.0%
TATAAGGAACTGTATACGTT+TGG + chr3_1:57685171-57685190 None:intergenic 30.0%
! TGAAGTTTTCTGCATATGAT+AGG + chr3_1:57685338-57685357 None:intergenic 30.0%
CTTCAAATTACAAAAGCTTC+TGG - chr3_1:57685415-57685434 Msa0364530:intron 30.0%
GAAAAGAAACTACTCTTACA+TGG - chr3_1:57685762-57685781 Msa0364530:intron 30.0%
AGGTAATAAAAGGACTTATG+TGG - chr3_1:57685912-57685931 Msa0364530:intron 30.0%
CATACAAGGTCAAAAATTGA+AGG + chr3_1:57685945-57685964 None:intergenic 30.0%
! CTTCAATTTTTGACCTTGTA+TGG - chr3_1:57685943-57685962 Msa0364530:intron 30.0%
CAAATAGAGCCTAAAAGAAA+AGG + chr3_1:57686055-57686074 None:intergenic 30.0%
! CTTTTCTTTTAGGCTCTATT+TGG - chr3_1:57686053-57686072 Msa0364530:CDS 30.0%
! AACAGCTTATAACTTGTATG+AGG + chr3_1:57686156-57686175 None:intergenic 30.0%
TATAAAGGTTACCGATATAC+CGG + chr3_1:57686286-57686305 None:intergenic 30.0%
TCGCGGAAAAAAAACTATAA+AGG + chr3_1:57686301-57686320 None:intergenic 30.0%
! ATATTAGCCTCATATCTACA+AGG + chr3_1:57686456-57686475 None:intergenic 30.0%
TCCTTTACATACTCATTCAT+TGG - chr3_1:57686570-57686589 Msa0364530:intron 30.0%
TCCAATGAATGAGTATGTAA+AGG + chr3_1:57686574-57686593 None:intergenic 30.0%
GTCACAACAATTGCAAAAAA+TGG - chr3_1:57686672-57686691 Msa0364530:CDS 30.0%
AACTCAACGTCTATATTTCA+GGG + chr3_1:57686715-57686734 None:intergenic 30.0%
AAACTCAACGTCTATATTTC+AGG + chr3_1:57686716-57686735 None:intergenic 30.0%
TGCAGAAAATGGAAGAATTA+TGG - chr3_1:57686748-57686767 Msa0364530:CDS 30.0%
GCAGAAAATGGAAGAATTAT+GGG - chr3_1:57686749-57686768 Msa0364530:CDS 30.0%
! AGAATTATGGGAAGTATAAC+AGG - chr3_1:57686761-57686780 Msa0364530:CDS 30.0%
AATTATCCTTCTTGAGATAC+AGG - chr3_1:57686865-57686884 Msa0364530:intron 30.0%
ATTATCATTCATTTGGTTGG+AGG - chr3_1:57687178-57687197 Msa0364530:intron 30.0%
TTTAATTGGTAAGGGACTAA+GGG + chr3_1:57687217-57687236 None:intergenic 30.0%
!! TTTTAATTGGTAAGGGACTA+AGG + chr3_1:57687218-57687237 None:intergenic 30.0%
GTTTCATGAATTTGACATGA+GGG + chr3_1:57687313-57687332 None:intergenic 30.0%
TGTTTCATGAATTTGACATG+AGG + chr3_1:57687314-57687333 None:intergenic 30.0%
CAAAAGTTTCAATGAAGTGT+CGG + chr3_1:57687390-57687409 None:intergenic 30.0%
TAACAAAACATAGCATAGGT+TGG + chr3_1:57687699-57687718 None:intergenic 30.0%
CTATCAGCTGTACTATATAT+TGG + chr3_1:57687814-57687833 None:intergenic 30.0%
TATATAGTACAGCTGATAGA+TGG - chr3_1:57687815-57687834 Msa0364530:exon 30.0%
ATCTCAAAAGAAGGTAATAG+AGG + chr3_1:57687898-57687917 None:intergenic 30.0%
AAATAAAATTGCTAGTCCAG+TGG + chr3_1:57687965-57687984 None:intergenic 30.0%
TATTGGGAGCTATAAATTTC+TGG - chr3_1:57688010-57688029 Msa0364530:intron 30.0%
GTACAAAGTACATTTCAACT+GGG + chr3_1:57688053-57688072 None:intergenic 30.0%
TGTACAAAGTACATTTCAAC+TGG + chr3_1:57688054-57688073 None:intergenic 30.0%
TACTTTGTACAGAAGAAAGT+TGG - chr3_1:57688063-57688082 Msa0364530:intron 30.0%
!! CTAGAAAATGGATTGTTCTA+AGG - chr3_1:57688094-57688113 Msa0364530:intron 30.0%
AGAGAGAAAATTAGTGGAAA+AGG - chr3_1:57688183-57688202 Msa0364530:intron 30.0%
! GTTTTCAGAGTTGTTAGATA+GGG - chr3_1:57688284-57688303 Msa0364530:intron 30.0%
GGATTAAGATATTTAAGGGA+TGG - chr3_1:57688305-57688324 Msa0364530:intron 30.0%
TAACTCCCTTCATAATTGTA+TGG - chr3_1:57688372-57688391 Msa0364530:five_prime_UTR 30.0%
GCAGATAAGAACATTTGCAT+TGG - chr3_1:57684804-57684823 Msa0364530:three_prime_UTR 35.0%
TATGCATATGGCTATGTGAT+TGG + chr3_1:57685121-57685140 None:intergenic 35.0%
CTGTATACGTTTGGTATGTA+TGG + chr3_1:57685162-57685181 None:intergenic 35.0%
!! AGGAAATGTAAAAAGTGCTG+TGG - chr3_1:57685570-57685589 Msa0364530:intron 35.0%
CATATCATCACAGCTGTTAT+TGG - chr3_1:57685595-57685614 Msa0364530:intron 35.0%
AGAAATCCTGATTCTGTAAC+TGG - chr3_1:57685739-57685758 Msa0364530:intron 35.0%
GAAATCCTGATTCTGTAACT+GGG - chr3_1:57685740-57685759 Msa0364530:intron 35.0%
GATGCTGTTAGAGTTAATCT+TGG - chr3_1:57685784-57685803 Msa0364530:intron 35.0%
AATAAAAGGACTTATGTGGC+TGG - chr3_1:57685916-57685935 Msa0364530:intron 35.0%
ATATTCAAGAAGGGTTGAAC+AGG + chr3_1:57686019-57686038 None:intergenic 35.0%
TGTTCAACCCTTCTTGAATA+TGG - chr3_1:57686018-57686037 Msa0364530:CDS 35.0%
AAGTCGTCCATATTCAAGAA+GGG + chr3_1:57686028-57686047 None:intergenic 35.0%
TAAGTCGTCCATATTCAAGA+AGG + chr3_1:57686029-57686048 None:intergenic 35.0%
!!! TAGTTTGTTTGGGGTTTTTC+CGG - chr3_1:57686264-57686283 Msa0364530:intron 35.0%
GATTGTAATGTCGTTCATAC+CGG - chr3_1:57686503-57686522 Msa0364530:intron 35.0%
ACATACTCATTCATTGGACT+AGG - chr3_1:57686576-57686595 Msa0364530:intron 35.0%
TTGTGACAATTATTGTGGGA+CGG + chr3_1:57686659-57686678 None:intergenic 35.0%
!! ATCGCTTTTCTTGCAGAAAA+TGG - chr3_1:57686737-57686756 Msa0364530:CDS 35.0%
CTAAAGTTGCTGACAAAATC+TGG - chr3_1:57686795-57686814 Msa0364530:intron 35.0%
CAAAATCTGGTTAATCTTCC+AGG - chr3_1:57686808-57686827 Msa0364530:intron 35.0%
TTCATTGTTTGATTCTCTGG+TGG + chr3_1:57687001-57687020 None:intergenic 35.0%
AACAATGAAAAAGGCTTCCA+TGG - chr3_1:57687012-57687031 Msa0364530:intron 35.0%
TGTAATGAAGATTGCAACCA+TGG + chr3_1:57687032-57687051 None:intergenic 35.0%
! TTGGATTTTATGAGCCTTAC+TGG - chr3_1:57687131-57687150 Msa0364530:intron 35.0%
AACTTCAGAAGAGACATAGT+TGG - chr3_1:57687622-57687641 Msa0364530:CDS 35.0%
TCAAAAAAATACCCCAACAG+TGG - chr3_1:57687841-57687860 Msa0364530:five_prime_UTR 35.0%
ATAGAGGAAGTTTCACTTTG+TGG + chr3_1:57687882-57687901 None:intergenic 35.0%
!! AACCAAGTTCTAGGAGTATT+GGG - chr3_1:57687994-57688013 Msa0364530:intron 35.0%
!! AGCTATAAATTTCTGGCCAT+TGG - chr3_1:57688017-57688036 Msa0364530:intron 35.0%
ACTGGGAAATATATAGCCAA+TGG + chr3_1:57688036-57688055 None:intergenic 35.0%
!! GGATTTGTTGGATCATTTGA+AGG - chr3_1:57688153-57688172 Msa0364530:intron 35.0%
CTTTAATTGGGGTTGTACAT+TGG - chr3_1:57688239-57688258 Msa0364530:intron 35.0%
! GGTTTTCAGAGTTGTTAGAT+AGG - chr3_1:57688283-57688302 Msa0364530:intron 35.0%
GACAGCAGAAAATCAGGAAA+AGG + chr3_1:57684844-57684863 None:intergenic 40.0%
AGTAGAGACAGCAGAAAATC+AGG + chr3_1:57684850-57684869 None:intergenic 40.0%
TCTCTACTCTCAAGGAAATC+TGG - chr3_1:57684862-57684881 Msa0364530:three_prime_UTR 40.0%
CTGACACAAGTCTATGCATA+TGG + chr3_1:57685133-57685152 None:intergenic 40.0%
TAAACTAGGCTGCATCTACT+AGG + chr3_1:57685288-57685307 None:intergenic 40.0%
! TCTGGTGCTTATGATGATGA+CGG - chr3_1:57685433-57685452 Msa0364530:intron 40.0%
!! ATGATGACGGACATGCAAAA+AGG - chr3_1:57685446-57685465 Msa0364530:intron 40.0%
!! ATCACAGCTGTTATTGGTTC+TGG - chr3_1:57685601-57685620 Msa0364530:intron 40.0%
!!! TGGTTCTGGTGTTTTGTCAT+TGG - chr3_1:57685615-57685634 Msa0364530:intron 40.0%
ACTGCTCAATTAGGATGGAT+TGG - chr3_1:57685646-57685665 Msa0364530:intron 40.0%
GCACAACAAAGCAAGAAAAC+TGG + chr3_1:57685676-57685695 None:intergenic 40.0%
! CTTTTCCCAGTTACAGAATC+AGG + chr3_1:57685748-57685767 None:intergenic 40.0%
!! ACAGGAGAAGTACTTCAAAC+TGG + chr3_1:57686001-57686020 None:intergenic 40.0%
! TTGGGGTTTTTCCGGTATAT+CGG - chr3_1:57686272-57686291 Msa0364530:intron 40.0%
! TCATTCATTGGACTAGGACT+TGG - chr3_1:57686582-57686601 Msa0364530:intron 40.0%
! AAGGTACCTGTATCTCAAGA+AGG + chr3_1:57686874-57686893 None:intergenic 40.0%
ATTGTTTGATTCTCTGGTGG+AGG + chr3_1:57686998-57687017 None:intergenic 40.0%
ACATTCTTCTACCTATGCTG+TGG - chr3_1:57687052-57687071 Msa0364530:intron 40.0%
!! TGCTTTGGATATGCAGCTTT+TGG - chr3_1:57687076-57687095 Msa0364530:intron 40.0%
GCAATGTCAATAAGCCAGTA+AGG + chr3_1:57687148-57687167 None:intergenic 40.0%
TCATTTGGTTGGAGGATATC+AGG - chr3_1:57687186-57687205 Msa0364530:intron 40.0%
GTCAGCATTAGTGTAGTGTA+TGG - chr3_1:57687503-57687522 Msa0364530:CDS 40.0%
AGCATTAGTGTAGTGTATGG+AGG - chr3_1:57687506-57687525 Msa0364530:CDS 40.0%
AGCTATGTGATTTCAACCAC+TGG - chr3_1:57687946-57687965 Msa0364530:intron 40.0%
CCTAGAACTTGGTTGAAGTA+AGG + chr3_1:57687988-57688007 None:intergenic 40.0%
CCTTACTTCAACCAAGTTCT+AGG - chr3_1:57687985-57688004 Msa0364530:intron 40.0%
!! CAACCAAGTTCTAGGAGTAT+TGG - chr3_1:57687993-57688012 Msa0364530:intron 40.0%
TACAGAAGAAAGTTGGAGCT+TGG - chr3_1:57688070-57688089 Msa0364530:intron 40.0%
! TTGGAGCTTGGACTAGAAAA+TGG - chr3_1:57688082-57688101 Msa0364530:intron 40.0%
CAAATCCAACCATTGTGACA+AGG + chr3_1:57688140-57688159 None:intergenic 40.0%
GTCACAATGGTTGGATTTGT+TGG - chr3_1:57688141-57688160 Msa0364530:intron 40.0%
TTCTGCTGTCTCTACTCTCA+AGG - chr3_1:57684854-57684873 Msa0364530:three_prime_UTR 45.0%
! CTGGTGTTTTGTCATTGGCA+TGG - chr3_1:57685620-57685639 Msa0364530:intron 45.0%
!! GCATGGAGTACTGCTCAATT+AGG - chr3_1:57685637-57685656 Msa0364530:intron 45.0%
!! GGAGTACTGCTCAATTAGGA+TGG - chr3_1:57685641-57685660 Msa0364530:intron 45.0%
!! GCTCAATTAGGATGGATTGG+AGG - chr3_1:57685649-57685668 Msa0364530:intron 45.0%
!! GGAGAAGTACTTCAAACTGG+TGG + chr3_1:57685998-57686017 None:intergenic 45.0%
! CAAGAAGCACAACAAACTCG+CGG + chr3_1:57686318-57686337 None:intergenic 45.0%
CCTCATATCTACAAGGAGCT+TGG + chr3_1:57686449-57686468 None:intergenic 45.0%
CCAAGCTCCTTGTAGATATG+AGG - chr3_1:57686446-57686465 Msa0364530:CDS 45.0%
CATACCGGATCTCCATAACT+TGG - chr3_1:57686518-57686537 Msa0364530:intron 45.0%
CAAGCCAAGTTATGGAGATC+CGG + chr3_1:57686525-57686544 None:intergenic 45.0%
GGATCTCCATAACTTGGCTT+GGG - chr3_1:57686524-57686543 Msa0364530:intron 45.0%
CTGAAACCCAAGCCAAGTTA+TGG + chr3_1:57686533-57686552 None:intergenic 45.0%
GACAATTATTGTGGGACGGA+TGG + chr3_1:57686655-57686674 None:intergenic 45.0%
TGGTTAATCTTCCAGGCACT+TGG - chr3_1:57686815-57686834 Msa0364530:intron 45.0%
AACTAATGTCACCAAGTGCC+TGG + chr3_1:57686829-57686848 None:intergenic 45.0%
TACCTATGCTGTGGTTGCTT+TGG - chr3_1:57687061-57687080 Msa0364530:intron 45.0%
ATCCAAAGCAACCACAGCAT+AGG + chr3_1:57687066-57687085 None:intergenic 45.0%
ACACCAGGAAATCTCTTGAC+AGG - chr3_1:57687106-57687125 Msa0364530:intron 45.0%
CACCAGGAAATCTCTTGACA+GGG - chr3_1:57687107-57687126 Msa0364530:intron 45.0%
AACCCTGTCAAGAGATTTCC+TGG + chr3_1:57687112-57687131 None:intergenic 45.0%
GGAAATCTCTTGACAGGGTT+TGG - chr3_1:57687112-57687131 Msa0364530:intron 45.0%
! TGACGTTGTCACTTCAGTGT+CGG + chr3_1:57687429-57687448 None:intergenic 45.0%
TCGTTCACAAAGCCACTGTT+GGG + chr3_1:57687856-57687875 None:intergenic 45.0%
ATCGTTCACAAAGCCACTGT+TGG + chr3_1:57687857-57687876 None:intergenic 45.0%
CTCCCAATACTCCTAGAACT+TGG + chr3_1:57687999-57688018 None:intergenic 45.0%
TGCTTGCTTCCTTGTCACAA+TGG - chr3_1:57688128-57688147 Msa0364530:intron 45.0%
TGCTTCCTTGTCACAATGGT+TGG - chr3_1:57688132-57688151 Msa0364530:intron 45.0%
!! ACTAAAATTATTAAATAAAT+GGG - chr3_1:57687577-57687596 Msa0364530:CDS 5.0%
GACGGACATGCAAAAAGGAC+TGG - chr3_1:57685451-57685470 Msa0364530:intron 50.0%
GGCAACACTAGTCCCATACA+AGG + chr3_1:57685959-57685978 None:intergenic 50.0%
GTACTTCAAACTGGTGGCTG+TGG + chr3_1:57685992-57686011 None:intergenic 50.0%
CGGATCTCCATAACTTGGCT+TGG - chr3_1:57686523-57686542 Msa0364530:intron 50.0%
!! GCTTTTGGAGATGCTACACC+AGG - chr3_1:57687091-57687110 Msa0364530:intron 50.0%
CGTTCACAAAGCCACTGTTG+GGG + chr3_1:57687855-57687874 None:intergenic 50.0%
GGTGGCTGTGGTGAGTACAT+AGG + chr3_1:57685980-57685999 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 57684755 57688464 57684755 ID=Msa0364530;Name=Msa0364530
chr3_1 mRNA 57684755 57688464 57684755 ID=Msa0364530-mRNA-1;Parent=Msa0364530;Name=Msa0364530-mRNA-1;_AED=0.22;_eAED=0.22;_QI=177|1|1|1|0.85|0.75|8|255|463
chr3_1 exon 57684755 57685420 57684755 ID=Msa0364530-mRNA-1:exon:10871;Parent=Msa0364530-mRNA-1
chr3_1 exon 57686012 57686239 57686012 ID=Msa0364530-mRNA-1:exon:10870;Parent=Msa0364530-mRNA-1
chr3_1 exon 57686333 57686466 57686333 ID=Msa0364530-mRNA-1:exon:10869;Parent=Msa0364530-mRNA-1
chr3_1 exon 57686598 57686812 57686598 ID=Msa0364530-mRNA-1:exon:10868;Parent=Msa0364530-mRNA-1
chr3_1 exon 57687212 57687305 57687212 ID=Msa0364530-mRNA-1:exon:10867;Parent=Msa0364530-mRNA-1
chr3_1 exon 57687414 57687647 57687414 ID=Msa0364530-mRNA-1:exon:10866;Parent=Msa0364530-mRNA-1
chr3_1 exon 57687747 57687870 57687747 ID=Msa0364530-mRNA-1:exon:10865;Parent=Msa0364530-mRNA-1
chr3_1 exon 57688336 57688464 57688336 ID=Msa0364530-mRNA-1:exon:10864;Parent=Msa0364530-mRNA-1
chr3_1 five_prime_UTR 57688336 57688464 57688336 ID=Msa0364530-mRNA-1:five_prime_utr;Parent=Msa0364530-mRNA-1
chr3_1 five_prime_UTR 57687823 57687870 57687823 ID=Msa0364530-mRNA-1:five_prime_utr;Parent=Msa0364530-mRNA-1
chr3_1 CDS 57687747 57687822 57687747 ID=Msa0364530-mRNA-1:cds;Parent=Msa0364530-mRNA-1
chr3_1 CDS 57687414 57687647 57687414 ID=Msa0364530-mRNA-1:cds;Parent=Msa0364530-mRNA-1
chr3_1 CDS 57687212 57687305 57687212 ID=Msa0364530-mRNA-1:cds;Parent=Msa0364530-mRNA-1
chr3_1 CDS 57686598 57686812 57686598 ID=Msa0364530-mRNA-1:cds;Parent=Msa0364530-mRNA-1
chr3_1 CDS 57686333 57686466 57686333 ID=Msa0364530-mRNA-1:cds;Parent=Msa0364530-mRNA-1
chr3_1 CDS 57686012 57686239 57686012 ID=Msa0364530-mRNA-1:cds;Parent=Msa0364530-mRNA-1
chr3_1 CDS 57685010 57685420 57685010 ID=Msa0364530-mRNA-1:cds;Parent=Msa0364530-mRNA-1
chr3_1 three_prime_UTR 57684755 57685009 57684755 ID=Msa0364530-mRNA-1:three_prime_utr;Parent=Msa0364530-mRNA-1
Gene Sequence

>Msa0364530

ATGGATGGGAAAAATTCTCTTCAAATTACAAAAGCTTCTGGTGCTTATGATGATGACGGACATGCAAAAAGGACTGGAAATGTAAAAAGTGCTGTGGCTCATATCATCACAGCTGTTATTGGTTCTGGTGTTTTGTCATTGGCATGGAGTACTGCTCAATTAGGATGGATTGGAGGACCAGTTTTCTTGCTTTGTTGTGCAATAGTTACTTATATTTCTTCGTTCCTTTTATCTGATTGTTATAGAAATCCTGATTCTGTAACTGGGAAAAGAAACTACTCTTACATGGATGCTGTTAGAGTTAATCTTGGTAATAAAAGGACTTATGTGGCTGGTTTCCTTCAATTTTTGACCTTGTATGGGACTAGTGTTGCCTATGTACTCACCACAGCCACCAGTTTGAAGGCTATTATGAGATCAAATTGCTATCATAAAGAAGGACACCAAGCTCCTTGTAGATATGAGGCTAATATATATATGGTGCTGTTTGGAGTTGTTCAGATTGTAATGTCGTTCATACCGGATCTCCATAACTTGGCTTGGGTTTCAGTTGTTGCTGCACTAATGTCCTTTACATACTCATTCATTGGACTAGGACTTGGCATATCAACAGTCATAAAAAATGGAAGAATTATGGGAAGTATAACAGGAGTACAAACTGCTAAAGTTGCTGACAAAATCTGGTTAATCTTCCAGGCACTTGGTGACATTAGTTTTTCCTATCCATATTCAATTATCCTTCTTGAGATACAGGACACACTAGAGTCTCCTCCACCAGAGAATCAAACAATGAAAAAGGCTTCCATGGTTGCAATCTTCATTACAACATTCTTCTACCTATGCTGTGGTTGCTTTGGATATGCAGCTTTTGGAGATGCTACACCAGGAAATCTCTTGACAGGGTTTGGATTTTATGAGCCTTACTGGCTTATTGACATTGCCAATGTTTGTATTATCATTCATTTGGTTGGAGGATATCAGATATACAGTCAACCAATATATAGTACAGCTGATAGATGGTTCTCAAAAAAATACCCCAACAGTGGCTTTGTGAACGATTTCCACAAAGTGAAACTTCCTCTATTACCTTCTTTTGAGATAAATCTTTTCAGGTTCTGTTTCAGAACAAGCTATGTGATTTCAACCACTGGACTAGCAATTTTATTTCCTTACTTCAACCAAGTTCTAGGAGTATTGGGAGCTATAAATTTCTGGCCATTGGCTATATATTTCCCAGTTGAAATGTACTTTGTACAGAAGAAAGTTGGAGCTTGGACTAGAAAATGGATTGTTCTAAGGATTTTTAGCTTTGCTTGCTTCCTTGTCACAATGGTTGGATTTGTTGGATCATTTGAAGGTATCATAAGAGAGAAAATTAGTGGAAAAGGCTAA
Protein sequence

>Msa0364530

MDGKNSLQITKASGAYDDDGHAKRTGNVKSAVAHIITAVIGSGVLSLAWSTAQLGWIGGPVFLLCCAIVTYISSFLLSDCYRNPDSVTGKRNYSYMDAVRVNLGNKRTYVAGFLQFLTLYGTSVAYVLTTATSLKAIMRSNCYHKEGHQAPCRYEANIYMVLFGVVQIVMSFIPDLHNLAWVSVVAALMSFTYSFIGLGLGISTVIKNGRIMGSITGVQTAKVADKIWLIFQALGDISFSYPYSIILLEIQDTLESPPPENQTMKKASMVAIFITTFFYLCCGCFGYAAFGDATPGNLLTGFGFYEPYWLIDIANVCIIIHLVGGYQIYSQPIYSTADRWFSKKYPNSGFVNDFHKVKLPLLPSFEINLFRFCFRTSYVISTTGLAILFPYFNQVLGVLGAINFWPLAIYFPVEMYFVQKKVGAWTRKWIVLRIFSFACFLVTMVGFVGSFEGIIREKISGKG*