Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503740 | KEH34114.1 | 83.943 | 492 | 15 | 3 | 1 | 457 | 1 | 463 | 0.0 | 813 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503740 | sp|Q9FF99|AAP7_ARATH | 51.380 | 471 | 166 | 6 | 19 | 452 | 21 | 465 | 2.50e-150 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503740 | A0A072UWA1 | 83.943 | 492 | 15 | 3 | 1 | 457 | 1 | 463 | 0.0 | 813 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007230 | Msa0503740 | 0.855690 | 5.325959e-62 | -8.615850e-47 |
| Msa0015370 | Msa0503740 | 0.808546 | 2.937070e-50 | -8.615850e-47 |
| Msa0030000 | Msa0503740 | 0.820956 | 5.213298e-53 | -8.615850e-47 |
| Msa0030030 | Msa0503740 | 0.820527 | 6.545454e-53 | -8.615850e-47 |
| Msa0039200 | Msa0503740 | 0.804581 | 2.016813e-49 | -8.615850e-47 |
| Msa0042220 | Msa0503740 | 0.802084 | 6.634468e-49 | -8.615850e-47 |
| Msa0047470 | Msa0503740 | 0.813411 | 2.594191e-51 | -8.615850e-47 |
| Msa0047940 | Msa0503740 | 0.804011 | 2.650668e-49 | -8.615850e-47 |
| Msa0050730 | Msa0503740 | 0.822119 | 2.808902e-53 | -8.615850e-47 |
| Msa0050760 | Msa0503740 | 0.805401 | 1.358710e-49 | -8.615850e-47 |
| Msa0055590 | Msa0503740 | 0.861058 | 1.339342e-63 | -8.615850e-47 |
| Msa0055650 | Msa0503740 | 0.801861 | 7.373455e-49 | -8.615850e-47 |
| Msa0058020 | Msa0503740 | 0.811612 | 6.417239e-51 | -8.615850e-47 |
| Msa0060600 | Msa0503740 | 0.826625 | 2.447898e-54 | -8.615850e-47 |
| Msa0074230 | Msa0503740 | 0.805860 | 1.088335e-49 | -8.615850e-47 |
| Msa0077330 | Msa0503740 | 0.805540 | 1.270580e-49 | -8.615850e-47 |
| Msa0086820 | Msa0503740 | 0.803672 | 3.117471e-49 | -8.615850e-47 |
| Msa0094420 | Msa0503740 | 0.803791 | 2.944440e-49 | -8.615850e-47 |
| Msa0097980 | Msa0503740 | 0.804341 | 2.262657e-49 | -8.615850e-47 |
| Msa0105340 | Msa0503740 | 0.835412 | 1.703595e-56 | -8.615850e-47 |
| Msa0105420 | Msa0503740 | 0.820342 | 7.214326e-53 | -8.615850e-47 |
| Msa0125230 | Msa0503740 | 0.805326 | 1.408687e-49 | -8.615850e-47 |
| Msa0133670 | Msa0503740 | 0.808306 | 3.305280e-50 | -8.615850e-47 |
| Msa0133880 | Msa0503740 | 0.816940 | 4.267712e-52 | -8.615850e-47 |
| Msa0141670 | Msa0503740 | 0.800689 | 1.280910e-48 | -8.615850e-47 |
| Msa0151690 | Msa0503740 | 0.823717 | 1.191818e-53 | -8.615850e-47 |
| Msa0162030 | Msa0503740 | 0.813682 | 2.261531e-51 | -8.615850e-47 |
| Msa0162050 | Msa0503740 | 0.818741 | 1.673445e-52 | -8.615850e-47 |
| Msa0162070 | Msa0503740 | 0.813259 | 2.802389e-51 | -8.615850e-47 |
| Msa0169960 | Msa0503740 | 0.810889 | 9.209950e-51 | -8.615850e-47 |
| Msa0181290 | Msa0503740 | 0.806166 | 9.388034e-50 | -8.615850e-47 |
| Msa0184120 | Msa0503740 | 0.801528 | 8.629032e-49 | -8.615850e-47 |
| Msa0193650 | Msa0503740 | 0.807875 | 4.081086e-50 | -8.615850e-47 |
| Msa0207180 | Msa0503740 | 0.833558 | 4.978771e-56 | -8.615850e-47 |
| Msa0221800 | Msa0503740 | 0.817160 | 3.808362e-52 | -8.615850e-47 |
| Msa0227510 | Msa0503740 | 0.841653 | 4.171772e-58 | -8.615850e-47 |
| Msa0230400 | Msa0503740 | 0.821473 | 3.962509e-53 | -8.615850e-47 |
| Msa0364530 | Msa0503740 | 0.850391 | 1.750245e-60 | -8.615850e-47 |
| Msa0365150 | Msa0503740 | 0.828690 | 7.814555e-55 | -8.615850e-47 |
| Msa0380420 | Msa0503740 | 0.821798 | 3.333278e-53 | -8.615850e-47 |
| Msa0380920 | Msa0503740 | 0.807234 | 5.584327e-50 | -8.615850e-47 |
| Msa0392410 | Msa0503740 | 0.800393 | 1.471825e-48 | -8.615850e-47 |
| Msa0411800 | Msa0503740 | 0.940051 | 4.514144e-100 | -8.615850e-47 |
| Msa0417150 | Msa0503740 | 0.801750 | 7.770083e-49 | -8.615850e-47 |
| Msa0420070 | Msa0503740 | 0.802181 | 6.336539e-49 | -8.615850e-47 |
| Msa0427050 | Msa0503740 | 0.829288 | 5.597399e-55 | -8.615850e-47 |
| Msa0437710 | Msa0503740 | 0.809724 | 1.642854e-50 | -8.615850e-47 |
| Msa0456280 | Msa0503740 | 0.858893 | 6.024409e-63 | -8.615850e-47 |
| Msa0456310 | Msa0503740 | 0.844627 | 6.723796e-59 | -8.615850e-47 |
| Msa0466100 | Msa0503740 | 0.808101 | 3.655007e-50 | -8.615850e-47 |
| Msa0472530 | Msa0503740 | 0.806931 | 6.473827e-50 | -8.615850e-47 |
| Msa0473450 | Msa0503740 | 0.816201 | 6.247451e-52 | -8.615850e-47 |
| Msa0243690 | Msa0503740 | 0.807087 | 5.997693e-50 | -8.615850e-47 |
| Msa0270610 | Msa0503740 | 0.803275 | 3.767194e-49 | -8.615850e-47 |
| Msa0274780 | Msa0503740 | 0.814519 | 1.478593e-51 | -8.615850e-47 |
| Msa0306130 | Msa0503740 | 0.812642 | 3.826142e-51 | -8.615850e-47 |
| Msa0313990 | Msa0503740 | 0.837314 | 5.590939e-57 | -8.615850e-47 |
| Msa0315480 | Msa0503740 | 0.824973 | 6.036508e-54 | -8.615850e-47 |
| Msa0330270 | Msa0503740 | 0.803564 | 3.282591e-49 | -8.615850e-47 |
| Msa0338570 | Msa0503740 | 0.827172 | 1.811953e-54 | -8.615850e-47 |
| Msa0344580 | Msa0503740 | 0.809378 | 1.949085e-50 | -8.615850e-47 |
| Msa0487560 | Msa0503740 | 0.821870 | 3.208961e-53 | -8.615850e-47 |
| Msa0487620 | Msa0503740 | 0.822143 | 2.773967e-53 | -8.615850e-47 |
| Msa0503740 | Msa0509500 | 0.807660 | 4.535604e-50 | -8.615850e-47 |
| Msa0503740 | Msa0509970 | 0.810828 | 9.494916e-51 | -8.615850e-47 |
| Msa0503740 | Msa0511890 | 0.813796 | 2.135332e-51 | -8.615850e-47 |
| Msa0503740 | Msa0514000 | 0.807789 | 4.256868e-50 | -8.615850e-47 |
| Msa0503740 | Msa0524200 | -0.800921 | 1.148451e-48 | -8.615850e-47 |
| Msa0503740 | Msa0530210 | 0.831320 | 1.784996e-55 | -8.615850e-47 |
| Msa0503740 | Msa0546380 | 0.824104 | 9.668457e-54 | -8.615850e-47 |
| Msa0503740 | Msa0547050 | 0.837234 | 5.863443e-57 | -8.615850e-47 |
| Msa0503740 | Msa0549740 | 0.809137 | 2.195505e-50 | -8.615850e-47 |
| Msa0503740 | Msa0558890 | 0.834972 | 2.199651e-56 | -8.615850e-47 |
| Msa0503740 | Msa0575450 | 0.800411 | 1.459514e-48 | -8.615850e-47 |
| Msa0503740 | Msa0581340 | 0.805580 | 1.246435e-49 | -8.615850e-47 |
| Msa0503740 | Msa0590660 | 0.803711 | 3.059851e-49 | -8.615850e-47 |
| Msa0503740 | Msa0601780 | 0.807191 | 5.700937e-50 | -8.615850e-47 |
| Msa0503740 | Msa0606060 | 0.821634 | 3.638762e-53 | -8.615850e-47 |
| Msa0503740 | Msa0621890 | 0.824945 | 6.130295e-54 | -8.615850e-47 |
| Msa0503740 | Msa0622390 | 0.830658 | 2.594410e-55 | -8.615850e-47 |
| Msa0503740 | Msa0626230 | 0.831946 | 1.251310e-55 | -8.615850e-47 |
| Msa0503740 | Msa0630960 | 0.824690 | 7.039940e-54 | -8.615850e-47 |
| Msa0503740 | Msa0630970 | 0.825493 | 4.548472e-54 | -8.615850e-47 |
| Msa0503740 | Msa0642910 | 0.821903 | 3.152991e-53 | -8.615850e-47 |
| Msa0503740 | Msa0647000 | 0.811698 | 6.145509e-51 | -8.615850e-47 |
| Msa0503740 | Msa0653710 | 0.829649 | 4.573870e-55 | -8.615850e-47 |
| Msa0503740 | Msa0654060 | 0.842753 | 2.133161e-58 | -8.615850e-47 |
| Msa0503740 | Msa0662850 | 0.852991 | 3.209904e-61 | -8.615850e-47 |
| Msa0503740 | Msa0662860 | 0.816775 | 4.648245e-52 | -8.615850e-47 |
| Msa0503740 | Msa0686610 | 0.823923 | 1.066677e-53 | -8.615850e-47 |
| Msa0503740 | Msa0697400 | 0.804450 | 2.147326e-49 | -8.615850e-47 |
| Msa0503740 | Msa0697440 | 0.818886 | 1.550907e-52 | -8.615850e-47 |
| Msa0503740 | Msa0709480 | 0.804707 | 1.898018e-49 | -8.615850e-47 |
| Msa0503740 | Msa0736930 | 0.834448 | 2.980026e-56 | -8.615850e-47 |
| Msa0503740 | Msa0739610 | 0.820400 | 6.996317e-53 | -8.615850e-47 |
| Msa0503740 | Msa0740420 | 0.814008 | 1.917179e-51 | -8.615850e-47 |
| Msa0503740 | Msa0743640 | 0.800238 | 1.582994e-48 | -8.615850e-47 |
| Msa0503740 | Msa0782330 | 0.838923 | 2.154274e-57 | -8.615850e-47 |
| Msa0503740 | Msa0796450 | 0.814371 | 1.593804e-51 | -8.615850e-47 |
| Msa0503740 | Msa0836190 | 0.817144 | 3.839205e-52 | -8.615850e-47 |
| Msa0503740 | Msa0860270 | 0.814456 | 1.526399e-51 | -8.615850e-47 |
| Msa0503740 | Msa0863760 | 0.802708 | 4.934396e-49 | -8.615850e-47 |
| Msa0503740 | Msa0893810 | 0.811859 | 5.670839e-51 | -8.615850e-47 |
| Msa0503740 | Msa0897390 | 0.802199 | 6.282726e-49 | -8.615850e-47 |
| Msa0503740 | Msa0907700 | 0.814179 | 1.757962e-51 | -8.615850e-47 |
| Msa0503740 | Msa0908170 | 0.800811 | 1.209525e-48 | -8.615850e-47 |
| Msa0503740 | Msa0923910 | 0.833657 | 4.703291e-56 | -8.615850e-47 |
| Msa0503740 | Msa0934830 | 0.818150 | 2.278228e-52 | -8.615850e-47 |
| Msa0503740 | Msa0955310 | 0.800147 | 1.651914e-48 | -8.615850e-47 |
| Msa0503740 | Msa0978000 | 0.838279 | 3.160068e-57 | -8.615850e-47 |
| Msa0503740 | Msa0980440 | 0.804356 | 2.246542e-49 | -8.615850e-47 |
| Msa0503740 | Msa0993530 | 0.832692 | 8.174455e-56 | -8.615850e-47 |
| Msa0503740 | Msa1000470 | 0.807318 | 5.359065e-50 | -8.615850e-47 |
| Msa0503740 | Msa1008490 | 0.817142 | 3.844214e-52 | -8.615850e-47 |
| Msa0503740 | Msa1009000 | 0.802080 | 6.647802e-49 | -8.615850e-47 |
| Msa0503740 | Msa1016130 | 0.803404 | 3.543318e-49 | -8.615850e-47 |
| Msa0503740 | Msa1020710 | 0.842503 | 2.484759e-58 | -8.615850e-47 |
| Msa0503740 | Msa1024580 | 0.810259 | 1.259844e-50 | -8.615850e-47 |
| Msa0503740 | Msa1030280 | 0.827843 | 1.250621e-54 | -8.615850e-47 |
| Msa0503740 | Msa1032350 | 0.810079 | 1.377776e-50 | -8.615850e-47 |
| Msa0503740 | Msa1056640 | 0.823331 | 1.467242e-53 | -8.615850e-47 |
| Msa0503740 | Msa1069300 | 0.826752 | 2.282551e-54 | -8.615850e-47 |
| Msa0503740 | Msa1080770 | 0.822648 | 2.116595e-53 | -8.615850e-47 |
| Msa0503740 | Msa1092820 | 0.827572 | 1.453194e-54 | -8.615850e-47 |
| Msa0503740 | Msa1097380 | 0.805994 | 1.020427e-49 | -8.615850e-47 |
| Msa0503740 | Msa1099030 | 0.844482 | 7.355594e-59 | -8.615850e-47 |
| Msa0503740 | Msa1120540 | 0.840339 | 9.227964e-58 | -8.615850e-47 |
| Msa0503740 | Msa1157160 | 0.806064 | 9.860276e-50 | -8.615850e-47 |
| Msa0503740 | Msa1166180 | 0.800326 | 1.519136e-48 | -8.615850e-47 |
| Msa0503740 | Msa1201990 | 0.831325 | 1.779707e-55 | -8.615850e-47 |
| Msa0503740 | Msa1220230 | 0.823049 | 1.707237e-53 | -8.615850e-47 |
| Msa0503740 | Msa1221260 | 0.800911 | 1.154292e-48 | -8.615850e-47 |
| Msa0503740 | Msa1221900 | 0.817741 | 2.817000e-52 | -8.615850e-47 |
| Msa0503740 | Msa1238490 | 0.823371 | 1.435713e-53 | -8.615850e-47 |
| Msa0503740 | Msa1248400 | 0.802494 | 5.462413e-49 | -8.615850e-47 |
| Msa0503740 | Msa1254770 | 0.804188 | 2.435756e-49 | -8.615850e-47 |
| Msa0503740 | Msa1254800 | 0.801266 | 9.763021e-49 | -8.615850e-47 |
| Msa0503740 | Msa1265070 | 0.839344 | 1.676463e-57 | -8.615850e-47 |
| Msa0503740 | Msa1267860 | 0.813191 | 2.900026e-51 | -8.615850e-47 |
| Msa0503740 | Msa1295010 | 0.819925 | 8.990578e-53 | -8.615850e-47 |
| Msa0503740 | Msa1310260 | 0.840825 | 6.885187e-58 | -8.615850e-47 |
| Msa0503740 | Msa1316170 | 0.840218 | 9.923272e-58 | -8.615850e-47 |
| Msa0503740 | Msa1325980 | 0.819796 | 9.620656e-53 | -8.615850e-47 |
| Msa0503740 | Msa1327820 | 0.830519 | 2.805002e-55 | -8.615850e-47 |
| Msa0503740 | Msa1329990 | 0.819993 | 8.672699e-53 | -8.615850e-47 |
| Msa0503740 | Msa1337340 | 0.823792 | 1.144731e-53 | -8.615850e-47 |
| Msa0503740 | Msa1337730 | 0.800918 | 1.150494e-48 | -8.615850e-47 |
| Msa0503740 | Msa1362510 | 0.800159 | 1.642490e-48 | -8.615850e-47 |
| Msa0503740 | Msa1365040 | -0.814571 | 1.439397e-51 | -8.615850e-47 |
| Msa0503740 | Msa1366620 | 0.810300 | 1.234444e-50 | -8.615850e-47 |
| Msa0503740 | Msa1367390 | -0.806575 | 7.697187e-50 | -8.615850e-47 |
| Msa0503740 | Msa1367940 | 0.807469 | 4.978819e-50 | -8.615850e-47 |
| Msa0503740 | Msa1370650 | 0.823451 | 1.375746e-53 | -8.615850e-47 |
| Msa0503740 | Msa1375630 | 0.826434 | 2.718377e-54 | -8.615850e-47 |
| Msa0503740 | Msa1376530 | 0.817428 | 3.314968e-52 | -8.615850e-47 |
| Msa0503740 | Msa1386520 | 0.817678 | 2.911672e-52 | -8.615850e-47 |
| Msa0503740 | Msa1419110 | 0.809676 | 1.682144e-50 | -8.615850e-47 |
| Msa0503740 | Msa1422750 | 0.843379 | 1.452889e-58 | -8.615850e-47 |
| Msa0503740 | Msa1422760 | 0.812485 | 4.139469e-51 | -8.615850e-47 |
| Msa0503740 | Msa1435470 | 0.818806 | 1.617587e-52 | -8.615850e-47 |
| Msa0503740 | Msa1439230 | 0.805619 | 1.223023e-49 | -8.615850e-47 |
| Msa0503740 | Msa1440180 | 0.818302 | 2.104307e-52 | -8.615850e-47 |
| Msa0503740 | Msa1440600 | 0.808621 | 2.831329e-50 | -8.615850e-47 |
| Msa0503740 | Msa1449740 | 0.818152 | 2.275241e-52 | -8.615850e-47 |
| Msa0503740 | Msa1457670 | -0.811906 | 5.537080e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503740 | MtrunA17_Chr3g0103231 | 83.740 | 492 | 16 | 3 | 1 | 457 | 1 | 463 | 0.0 | 811 |
| Msa0503740 | MtrunA17_Chr3g0103211 | 74.642 | 489 | 60 | 3 | 1 | 454 | 1 | 460 | 0.0 | 733 |
| Msa0503740 | MtrunA17_Chr3g0103221 | 70.683 | 498 | 75 | 5 | 1 | 456 | 1 | 469 | 0.0 | 692 |
| Msa0503740 | MtrunA17_Chr3g0103251 | 93.598 | 328 | 18 | 1 | 133 | 457 | 49 | 376 | 0.0 | 633 |
| Msa0503740 | MtrunA17_Chr5g0447221 | 62.607 | 468 | 109 | 5 | 23 | 454 | 29 | 466 | 0.0 | 579 |
| Msa0503740 | MtrunA17_Chr3g0103271 | 48.765 | 486 | 187 | 5 | 2 | 454 | 9 | 465 | 9.07e-162 | 465 |
| Msa0503740 | MtrunA17_Chr3g0125081 | 46.218 | 476 | 198 | 4 | 6 | 449 | 17 | 466 | 8.50e-154 | 445 |
| Msa0503740 | MtrunA17_Chr3g0125091 | 46.541 | 477 | 196 | 5 | 6 | 449 | 17 | 467 | 1.07e-153 | 445 |
| Msa0503740 | MtrunA17_Chr8g0384661 | 45.781 | 474 | 188 | 4 | 15 | 451 | 42 | 483 | 7.27e-152 | 441 |
| Msa0503740 | MtrunA17_Chr3g0125101 | 45.720 | 479 | 201 | 5 | 6 | 451 | 17 | 469 | 4.44e-151 | 438 |
| Msa0503740 | MtrunA17_Chr4g0037201 | 44.563 | 469 | 210 | 3 | 13 | 449 | 49 | 499 | 6.88e-150 | 436 |
| Msa0503740 | MtrunA17_Chr1g0159761 | 47.072 | 461 | 185 | 4 | 10 | 436 | 14 | 449 | 2.07e-148 | 431 |
| Msa0503740 | MtrunA17_Chr3g0140761 | 44.033 | 486 | 212 | 5 | 4 | 451 | 8 | 471 | 1.59e-146 | 427 |
| Msa0503740 | MtrunA17_Chr5g0447231 | 47.109 | 467 | 182 | 4 | 23 | 453 | 25 | 462 | 6.72e-146 | 424 |
| Msa0503740 | MtrunA17_Chr1g0146491 | 43.590 | 468 | 210 | 4 | 16 | 451 | 16 | 461 | 7.21e-142 | 414 |
| Msa0503740 | MtrunA17_Chr3g0130641 | 42.918 | 473 | 201 | 4 | 16 | 451 | 26 | 466 | 2.47e-137 | 403 |
| Msa0503740 | MtrunA17_Chr3g0130651 | 44.835 | 455 | 180 | 5 | 11 | 428 | 14 | 434 | 6.66e-133 | 391 |
| Msa0503740 | MtrunA17_Chr1g0206871 | 42.308 | 468 | 205 | 5 | 23 | 449 | 15 | 458 | 7.90e-132 | 389 |
| Msa0503740 | MtrunA17_Chr1g0206821 | 39.962 | 523 | 233 | 8 | 7 | 451 | 1 | 520 | 8.92e-127 | 378 |
| Msa0503740 | MtrunA17_Chr3g0140531 | 39.085 | 481 | 236 | 4 | 1 | 448 | 1 | 457 | 1.58e-119 | 357 |
| Msa0503740 | MtrunA17_Chr1g0146331 | 37.740 | 469 | 234 | 6 | 17 | 453 | 14 | 456 | 6.17e-112 | 338 |
| Msa0503740 | MtrunA17_Chr1g0146411 | 37.365 | 463 | 227 | 4 | 17 | 447 | 27 | 458 | 1.19e-111 | 337 |
| Msa0503740 | MtrunA17_Chr3g0140541 | 39.407 | 472 | 228 | 6 | 9 | 448 | 11 | 456 | 3.45e-111 | 336 |
| Msa0503740 | MtrunA17_Chr2g0293331 | 37.204 | 465 | 234 | 4 | 16 | 448 | 5 | 443 | 4.19e-107 | 325 |
| Msa0503740 | MtrunA17_Chr1g0146391 | 35.546 | 467 | 243 | 4 | 17 | 451 | 6 | 446 | 5.72e-106 | 322 |
| Msa0503740 | MtrunA17_Chr1g0206851 | 44.510 | 337 | 148 | 5 | 115 | 451 | 73 | 370 | 3.29e-95 | 292 |
| Msa0503740 | MtrunA17_Chr1g0206831 | 45.741 | 317 | 144 | 4 | 135 | 451 | 45 | 333 | 8.55e-95 | 289 |
| Msa0503740 | MtrunA17_Chr3g0103261 | 95.556 | 135 | 6 | 0 | 1 | 135 | 1 | 135 | 2.33e-87 | 264 |
| Msa0503740 | MtrunA17_Chr5g0402151 | 40.439 | 319 | 101 | 5 | 26 | 312 | 3 | 264 | 3.29e-67 | 216 |
| Msa0503740 | MtrunA17_Chr3g0130661 | 50.296 | 169 | 81 | 1 | 280 | 448 | 2 | 167 | 7.94e-57 | 186 |
| Msa0503740 | MtrunA17_Chr3g0130671 | 38.610 | 259 | 91 | 4 | 1 | 222 | 19 | 246 | 2.79e-46 | 161 |
| Msa0503740 | MtrunA17_Chr6g0458931 | 26.484 | 438 | 237 | 11 | 22 | 426 | 41 | 426 | 6.88e-36 | 138 |
| Msa0503740 | MtrunA17_Chr4g0057851 | 26.879 | 439 | 231 | 12 | 22 | 423 | 2 | 387 | 4.23e-35 | 135 |
| Msa0503740 | MtrunA17_Chr1g0206841 | 57.143 | 105 | 43 | 1 | 1 | 105 | 1 | 103 | 4.67e-33 | 120 |
| Msa0503740 | MtrunA17_Chr2g0331721 | 25.503 | 447 | 247 | 11 | 10 | 423 | 32 | 425 | 1.29e-31 | 126 |
| Msa0503740 | MtrunA17_Chr8g0376991 | 25.435 | 460 | 296 | 12 | 5 | 451 | 3 | 428 | 1.97e-31 | 125 |
| Msa0503740 | MtrunA17_Chr1g0206861 | 59.783 | 92 | 37 | 0 | 16 | 107 | 14 | 105 | 1.59e-30 | 115 |
| Msa0503740 | MtrunA17_Chr5g0422741 | 26.180 | 466 | 262 | 11 | 18 | 454 | 22 | 434 | 3.26e-28 | 116 |
| Msa0503740 | MtrunA17_Chr3g0077651 | 26.329 | 395 | 208 | 10 | 22 | 384 | 51 | 394 | 1.32e-26 | 112 |
| Msa0503740 | MtrunA17_Chr7g0230011 | 25.737 | 373 | 197 | 9 | 10 | 338 | 3 | 339 | 3.84e-26 | 110 |
| Msa0503740 | MtrunA17_Chr1g0198531 | 25.263 | 475 | 267 | 12 | 10 | 452 | 12 | 430 | 1.38e-25 | 108 |
| Msa0503740 | MtrunA17_Chr3g0122921 | 24.086 | 465 | 252 | 13 | 22 | 456 | 32 | 425 | 1.56e-25 | 108 |
| Msa0503740 | MtrunA17_Chr6g0459011 | 25.113 | 442 | 250 | 9 | 39 | 451 | 1 | 390 | 3.23e-25 | 107 |
| Msa0503740 | MtrunA17_Chr1g0146351 | 50.000 | 98 | 48 | 1 | 34 | 131 | 14 | 110 | 3.99e-25 | 99.4 |
| Msa0503740 | MtrunA17_Chr6g0459021 | 25.280 | 447 | 253 | 9 | 34 | 451 | 45 | 439 | 6.05e-25 | 106 |
| Msa0503740 | MtrunA17_Chr6g0459031 | 25.670 | 448 | 251 | 11 | 34 | 451 | 25 | 420 | 2.00e-24 | 105 |
| Msa0503740 | MtrunA17_Chr6g0458921 | 24.324 | 481 | 273 | 12 | 1 | 451 | 1 | 420 | 3.60e-24 | 104 |
| Msa0503740 | MtrunA17_Chr1g0198541 | 25.416 | 421 | 263 | 12 | 19 | 425 | 20 | 403 | 7.10e-24 | 103 |
| Msa0503740 | MtrunA17_Chr2g0328081 | 24.936 | 393 | 215 | 9 | 18 | 381 | 9 | 350 | 3.53e-22 | 98.6 |
| Msa0503740 | MtrunA17_Chr6g0459001 | 26.101 | 318 | 171 | 7 | 34 | 322 | 33 | 315 | 7.43e-22 | 97.8 |
| Msa0503740 | MtrunA17_Chr8g0387941 | 24.573 | 468 | 266 | 15 | 17 | 448 | 18 | 434 | 4.10e-19 | 89.4 |
| Msa0503740 | MtrunA17_Chr1g0184721 | 22.175 | 469 | 283 | 14 | 14 | 451 | 13 | 430 | 4.66e-19 | 89.4 |
| Msa0503740 | MtrunA17_Chr4g0027241 | 24.545 | 440 | 246 | 13 | 4 | 407 | 19 | 408 | 5.95e-18 | 85.9 |
| Msa0503740 | MtrunA17_Chr1g0159751 | 59.615 | 52 | 21 | 0 | 258 | 309 | 1 | 52 | 1.41e-15 | 71.6 |
| Msa0503740 | MtrunA17_Chr4g0038711 | 22.171 | 433 | 249 | 11 | 24 | 415 | 71 | 456 | 5.55e-15 | 77.0 |
| Msa0503740 | MtrunA17_Chr3g0143701 | 22.101 | 457 | 297 | 17 | 22 | 454 | 83 | 504 | 1.55e-14 | 75.9 |
| Msa0503740 | MtrunA17_Chr5g0436281 | 23.604 | 394 | 253 | 12 | 54 | 436 | 4 | 360 | 1.54e-11 | 65.9 |
| Msa0503740 | MtrunA17_Chr4g0058161 | 24.088 | 411 | 258 | 13 | 54 | 451 | 71 | 440 | 3.54e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0503740 | AT5G23810.1 | 51.380 | 471 | 166 | 6 | 19 | 452 | 21 | 465 | 2.55e-151 | 439 |
| Msa0503740 | AT5G09220.1 | 45.299 | 468 | 197 | 4 | 16 | 449 | 38 | 480 | 1.29e-150 | 438 |
| Msa0503740 | AT1G44100.1 | 47.158 | 475 | 195 | 4 | 12 | 451 | 16 | 469 | 2.01e-150 | 437 |
| Msa0503740 | AT1G77380.1 | 46.336 | 464 | 183 | 3 | 10 | 436 | 16 | 450 | 3.03e-150 | 436 |
| Msa0503740 | AT1G10010.1 | 44.625 | 493 | 212 | 5 | 1 | 456 | 1 | 469 | 4.86e-149 | 433 |
| Msa0503740 | AT1G10010.2 | 44.625 | 493 | 212 | 5 | 1 | 456 | 2 | 470 | 6.52e-149 | 433 |
| Msa0503740 | AT5G63850.1 | 44.915 | 472 | 193 | 4 | 16 | 449 | 11 | 453 | 1.19e-146 | 427 |
| Msa0503740 | AT1G58360.1 | 43.478 | 483 | 216 | 4 | 2 | 451 | 15 | 473 | 6.90e-146 | 426 |
| Msa0503740 | AT5G49630.1 | 42.887 | 478 | 216 | 5 | 8 | 451 | 17 | 471 | 1.51e-141 | 414 |
| Msa0503740 | AT5G23810.2 | 50.000 | 344 | 111 | 5 | 19 | 327 | 21 | 338 | 6.87e-99 | 301 |
| Msa0503740 | AT5G23810.4 | 42.366 | 262 | 90 | 5 | 19 | 245 | 21 | 256 | 3.03e-55 | 185 |
| Msa0503740 | AT5G23810.5 | 45.026 | 191 | 70 | 2 | 19 | 174 | 21 | 211 | 1.55e-42 | 150 |
| Msa0503740 | AT5G23810.3 | 45.026 | 191 | 70 | 2 | 19 | 174 | 21 | 211 | 1.55e-42 | 150 |
| Msa0503740 | AT1G61270.1 | 24.130 | 460 | 266 | 9 | 22 | 450 | 32 | 439 | 2.13e-31 | 125 |
| Msa0503740 | AT5G40780.1 | 24.726 | 457 | 252 | 13 | 34 | 457 | 44 | 441 | 2.49e-30 | 122 |
| Msa0503740 | AT3G01760.1 | 24.176 | 455 | 256 | 13 | 22 | 440 | 30 | 431 | 2.37e-29 | 120 |
| Msa0503740 | AT1G24400.1 | 25.612 | 449 | 245 | 12 | 34 | 449 | 39 | 431 | 8.31e-29 | 118 |
| Msa0503740 | AT5G40780.3 | 24.336 | 452 | 250 | 13 | 39 | 457 | 1 | 393 | 5.22e-28 | 115 |
| Msa0503740 | AT5G40780.2 | 24.336 | 452 | 250 | 13 | 39 | 457 | 1 | 393 | 5.22e-28 | 115 |
| Msa0503740 | AT1G48640.1 | 24.582 | 419 | 235 | 9 | 34 | 423 | 51 | 417 | 9.00e-27 | 112 |
| Msa0503740 | AT1G67640.1 | 24.494 | 445 | 255 | 10 | 34 | 449 | 39 | 431 | 2.32e-25 | 108 |
| Msa0503740 | AT1G25530.1 | 25.105 | 474 | 274 | 10 | 8 | 452 | 12 | 433 | 7.47e-25 | 107 |
| Msa0503740 | AT1G71680.2 | 27.246 | 345 | 188 | 8 | 22 | 337 | 33 | 343 | 7.78e-21 | 94.0 |
| Msa0503740 | AT1G71680.1 | 25.754 | 431 | 240 | 10 | 22 | 423 | 33 | 412 | 2.63e-20 | 93.6 |
| Msa0503740 | AT2G39890.3 | 24.079 | 407 | 235 | 15 | 54 | 436 | 4 | 360 | 1.45e-15 | 78.6 |
| Msa0503740 | AT2G39890.2 | 24.010 | 404 | 239 | 14 | 54 | 436 | 63 | 419 | 1.57e-15 | 79.0 |
| Msa0503740 | AT2G39890.1 | 24.010 | 404 | 239 | 14 | 54 | 436 | 63 | 419 | 1.57e-15 | 79.0 |
| Msa0503740 | AT3G55740.2 | 25.067 | 371 | 226 | 13 | 54 | 412 | 4 | 334 | 5.81e-15 | 76.6 |
| Msa0503740 | AT3G55740.3 | 25.067 | 371 | 226 | 13 | 54 | 412 | 4 | 334 | 5.81e-15 | 76.6 |
| Msa0503740 | AT3G55740.1 | 24.731 | 372 | 226 | 11 | 54 | 412 | 60 | 390 | 6.05e-15 | 77.0 |
| Msa0503740 | AT5G41800.1 | 22.444 | 450 | 261 | 13 | 34 | 448 | 37 | 433 | 6.31e-15 | 77.0 |
| Msa0503740 | AT2G36590.1 | 23.200 | 375 | 234 | 10 | 54 | 415 | 57 | 390 | 3.87e-13 | 71.6 |
Find 119 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATAATGATTTACTTTATT+TGG | 0.017816 | 3_4:-47279785 | Msa0503740:three_prime_UTR |
| ATAGGTATTTAAGATATTTA+AGG | 0.175408 | 3_4:-47279710 | Msa0503740:three_prime_UTR |
| TGCAGAAAATGGAAGAATTA+TGG | 0.179312 | 3_4:-47281267 | Msa0503740:CDS |
| CCTTACTTCAACCAAGTTCT+AGG | 0.184744 | 3_4:-47280026 | Msa0503740:CDS |
| CTTATCTGCATATAAAATTA+TGG | 0.193214 | 3_4:+47282966 | None:intergenic |
| TTGAATTTGAATCATATTCT+TGG | 0.237090 | 3_4:-47282408 | Msa0503740:five_prime_UTR |
| AATAATGATTTACTTTATTT+GGG | 0.237720 | 3_4:-47279784 | Msa0503740:three_prime_UTR |
| TATTGGGAGCTATAAATTTC+TGG | 0.241934 | 3_4:-47280001 | Msa0503740:CDS |
| AGAAATCCTGATTCTGTAAC+TGG | 0.252687 | 3_4:-47282044 | Msa0503740:CDS |
| TTGGAGCTTGGACTAGAAAA+TGG | 0.253711 | 3_4:-47279929 | Msa0503740:CDS |
| AATCGCATTATTGCAGAAAA+TGG | 0.257647 | 3_4:-47281278 | Msa0503740:CDS |
| CATATCATCACAGCAGTTAT+TGG | 0.260349 | 3_4:-47282188 | Msa0503740:CDS |
| AATAAAGTAAATCATTATTA+AGG | 0.273198 | 3_4:+47279788 | None:intergenic |
| TGCTTTGGATATGCAGCTTT+TGG | 0.275745 | 3_4:-47280939 | Msa0503740:CDS |
| TTCTATAACAATCAGATAAA+AGG | 0.277934 | 3_4:+47282063 | None:intergenic |
| GTCACTGTGGTTGGATTTGT+TGG | 0.286199 | 3_4:-47279870 | Msa0503740:CDS |
| GGAAATCTCTTGACAGGGTT+TGG | 0.296932 | 3_4:-47280903 | Msa0503740:CDS |
| AAATTGGTTCAGGTAATAAA+AGG | 0.299928 | 3_4:-47281882 | Msa0503740:intron |
| TCATTTGGTTGGAGGATATC+AGG | 0.300513 | 3_4:-47280829 | Msa0503740:intron |
| CTAGAAAATGGATTGTTCTA+AGG | 0.318873 | 3_4:-47279917 | Msa0503740:CDS |
| TCCTTTACATACTCATTCAT+TGG | 0.319715 | 3_4:-47281401 | Msa0503740:CDS |
| CTATCAGCTGTACTATATAT+TGG | 0.330424 | 3_4:+47280200 | None:intergenic |
| TATCTATGTTGTGGTTGCTT+TGG | 0.333177 | 3_4:-47280954 | Msa0503740:CDS |
| TGTACAAAGTACATTTCAAC+TGG | 0.334153 | 3_4:+47279960 | None:intergenic |
| TCAAGAAGGATAATTGAATA+TGG | 0.335571 | 3_4:+47281158 | None:intergenic |
| CTTCAAATTACAAAAGCTTC+TGG | 0.337199 | 3_4:-47282361 | Msa0503740:CDS |
| AGTTGAGACAGCAGAAAATC+AGG | 0.337199 | 3_4:+47282909 | None:intergenic |
| CTAAAGTTGCTGACAAAATC+TGG | 0.337495 | 3_4:-47281220 | Msa0503740:CDS |
| CAAAATCTGGTTAATCTTCC+AGG | 0.338409 | 3_4:-47281207 | Msa0503740:CDS |
| TAGGTATTTAAGATATTTAA+GGG | 0.338588 | 3_4:-47279709 | Msa0503740:three_prime_UTR |
| GCAGAAAATGGAAGAATTAT+GGG | 0.345376 | 3_4:-47281266 | Msa0503740:CDS |
| TATAGTAATTATATAGGCTT+GGG | 0.349456 | 3_4:+47282991 | None:intergenic |
| GCAATGTCAATAAGCCAATA+AGG | 0.352370 | 3_4:+47280870 | None:intergenic |
| AACCCTGTCAAGAGATTTCC+TGG | 0.353548 | 3_4:+47280906 | None:intergenic |
| ATGGCTTATAGTAATTATAT+AGG | 0.354565 | 3_4:+47282985 | None:intergenic |
| AATTTGAAGTTTGATATTGA+TGG | 0.355618 | 3_4:-47279607 | Msa0503740:three_prime_UTR |
| AACCAAGTTCTAGGAGTATT+GGG | 0.356017 | 3_4:-47280017 | Msa0503740:CDS |
| AATTATCCTTCTTGAGATAC+AGG | 0.364268 | 3_4:-47281150 | Msa0503740:intron |
| CAACCAAGTTCTAGGAGTAT+TGG | 0.368080 | 3_4:-47280018 | Msa0503740:CDS |
| ATCACAGCAGTTATTGGTTC+TGG | 0.378445 | 3_4:-47282182 | Msa0503740:CDS |
| TGTTTGTATTATCATTCATT+TGG | 0.384293 | 3_4:-47280844 | Msa0503740:CDS |
| TGCTTCCTTGTCACTGTGGT+TGG | 0.386242 | 3_4:-47279879 | Msa0503740:CDS |
| TCTCAACTCTCAAGGAAATC+TGG | 0.386517 | 3_4:-47282894 | Msa0503740:intron |
| GCATGGAGTACTGCTCAATT+AGG | 0.392253 | 3_4:-47282146 | Msa0503740:CDS |
| ATAGAGGAAGTTTCACTTTG+TGG | 0.396172 | 3_4:+47280132 | None:intergenic |
| GTTGGAACTCACTTCTTTGA+AGG | 0.416466 | 3_4:+47279632 | None:intergenic |
| GGATCTCCATAACTTGGCTT+GGG | 0.421014 | 3_4:-47281447 | Msa0503740:CDS |
| TGTATTATCATTCATTTGGT+TGG | 0.421033 | 3_4:-47280840 | Msa0503740:CDS |
| CTGAAACCCAAGCCAAGTTA+TGG | 0.421752 | 3_4:+47281441 | None:intergenic |
| AGTGAGAAAATTAGTGGAAA+AGG | 0.428631 | 3_4:-47279828 | Msa0503740:CDS |
| TACAGAAGAAAGTTGGAGCT+TGG | 0.429896 | 3_4:-47279941 | Msa0503740:CDS |
| TCGTTCACAAAGCCACTGTT+GGG | 0.433351 | 3_4:+47280158 | None:intergenic |
| CGGATCTCCATAACTTGGCT+TGG | 0.438990 | 3_4:-47281448 | Msa0503740:CDS |
| GGATTTGTTGGATCATTTGA+AGG | 0.441279 | 3_4:-47279858 | Msa0503740:CDS |
| AACTAATGTCACCAAGTGCC+TGG | 0.445133 | 3_4:+47281189 | None:intergenic |
| AGAATATGATTCAAATTCAA+TGG | 0.447370 | 3_4:+47282411 | None:intergenic |
| AGCTATAAATTTCTGGCCAT+TGG | 0.449959 | 3_4:-47279994 | Msa0503740:CDS |
| TAAACTCAACGTCGTTATTG+TGG | 0.450775 | 3_4:+47281300 | None:intergenic |
| TATATAGTACAGCTGATAGA+TGG | 0.451887 | 3_4:-47280196 | Msa0503740:CDS |
| CTTTATTTGGGGTTGTACAT+TGG | 0.452424 | 3_4:-47279772 | Msa0503740:three_prime_UTR |
| ATCATAAGTGAGAAAATTAG+TGG | 0.459491 | 3_4:-47279834 | Msa0503740:CDS |
| CCTAGAACTTGGTTGAAGTA+AGG | 0.463113 | 3_4:+47280026 | None:intergenic |
| TTATAGTAATTATATAGGCT+TGG | 0.466701 | 3_4:+47282990 | None:intergenic |
| CTGATTCTGTAACTGGGAAA+AGG | 0.467300 | 3_4:-47282037 | Msa0503740:CDS |
| AAACTCAACGTCGTTATTGT+GGG | 0.467915 | 3_4:+47281301 | None:intergenic |
| ATCTCAAAAGAAGGTAATAG+AGG | 0.469814 | 3_4:+47280116 | None:intergenic |
| GCACAACAAAGCAAGAAAAC+TGG | 0.471757 | 3_4:+47282110 | None:intergenic |
| GATGCTGTTAGAGTTAATCT+TGG | 0.473459 | 3_4:-47281999 | Msa0503740:intron |
| GACAGCAGAAAATCAGGAAA+AGG | 0.474634 | 3_4:+47282915 | None:intergenic |
| ATTGTTTGATTCTCCGGTGG+AGG | 0.475409 | 3_4:+47281020 | None:intergenic |
| ACACCAGGAAATCTCTTGAC+AGG | 0.477743 | 3_4:-47280909 | Msa0503740:CDS |
| ATTATCATTCATTTGGTTGG+AGG | 0.478152 | 3_4:-47280837 | Msa0503740:CDS |
| CTCCCAATACTCCTAGAACT+TGG | 0.478581 | 3_4:+47280015 | None:intergenic |
| ACTGCTCAATTAGGATGGAT+TGG | 0.481783 | 3_4:-47282137 | Msa0503740:CDS |
| CATACCGGATCTCCATAACT+TGG | 0.488256 | 3_4:-47281453 | Msa0503740:CDS |
| TACTTTGTACAGAAGAAAGT+TGG | 0.497035 | 3_4:-47279948 | Msa0503740:CDS |
| TTCTGCTGTCTCAACTCTCA+AGG | 0.498417 | 3_4:-47282902 | Msa0503740:five_prime_UTR |
| TGGTTAATCTTCCAGGCACT+TGG | 0.501530 | 3_4:-47281200 | Msa0503740:CDS |
| GATTGTAATGTCGTTCATAC+CGG | 0.514727 | 3_4:-47281468 | Msa0503740:CDS |
| TTGGAACTCACTTCTTTGAA+GGG | 0.517088 | 3_4:+47279633 | None:intergenic |
| TATTTAAGATATTTAAGGGA+TGG | 0.517413 | 3_4:-47279705 | Msa0503740:three_prime_UTR |
| TCCAATGAATGAGTATGTAA+AGG | 0.518895 | 3_4:+47281400 | None:intergenic |
| AAAAGATTTATCTCAAAAGA+AGG | 0.519229 | 3_4:+47280107 | None:intergenic |
| ATCGTTCACAAAGCCACTGT+TGG | 0.519554 | 3_4:+47280157 | None:intergenic |
| GCAGATAAGAACATTTGCAT+TGG | 0.525579 | 3_4:-47282952 | Msa0503740:five_prime_UTR |
| ACATTCTTCTATCTATGTTG+TGG | 0.526769 | 3_4:-47280963 | Msa0503740:CDS |
| ATGAATGATAATACAAACAT+TGG | 0.532293 | 3_4:+47280848 | None:intergenic |
| CAAGCCAAGTTATGGAGATC+CGG | 0.534080 | 3_4:+47281449 | None:intergenic |
| CGTCGTTATTGTGGGACGGA+TGG | 0.534312 | 3_4:+47281309 | None:intergenic |
| AAGGATAATTGAATATGGAT+AGG | 0.542619 | 3_4:+47281163 | None:intergenic |
| TCATTCATTGGACTAGGACT+TGG | 0.543159 | 3_4:-47281389 | Msa0503740:CDS |
| AATAAAAGGACTTATGTGGC+TGG | 0.543815 | 3_4:-47281868 | Msa0503740:CDS |
| GTACTTCAAACTGGTGGCTG+TGG | 0.546800 | 3_4:+47281795 | None:intergenic |
| TCTGGTGCTTATGATGATGA+TGG | 0.551479 | 3_4:-47282343 | Msa0503740:CDS |
| GAAAAGGAACTACTCTTACA+TGG | 0.555365 | 3_4:-47282021 | Msa0503740:CDS |
| AGCTATGTGATTTCAACCAC+TGG | 0.557700 | 3_4:-47280065 | Msa0503740:CDS |
| TTCATGTAATGTAATAGTAG+TGG | 0.561614 | 3_4:-47279749 | Msa0503740:three_prime_UTR |
| ACATACTCATTCATTGGACT+AGG | 0.574709 | 3_4:-47281395 | Msa0503740:CDS |
| ATAATGATTTACTTTATTTG+GGG | 0.577273 | 3_4:-47279783 | Msa0503740:three_prime_UTR |
| GGAGTACTGCTCAATTAGGA+TGG | 0.581347 | 3_4:-47282142 | Msa0503740:CDS |
| AGGTAATAAAAGGACTTATG+TGG | 0.583654 | 3_4:-47281872 | Msa0503740:CDS |
| AAGGTACCTGTATCTCAAGA+AGG | 0.587507 | 3_4:+47281144 | None:intergenic |
| CACCAGGAAATCTCTTGACA+GGG | 0.588202 | 3_4:-47280908 | Msa0503740:CDS |
| TGCTTGCTTCCTTGTCACTG+TGG | 0.589369 | 3_4:-47279883 | Msa0503740:CDS |
| GAAATCCTGATTCTGTAACT+GGG | 0.591659 | 3_4:-47282043 | Msa0503740:CDS |
| GCTCAATTAGGATGGATTGG+AGG | 0.591982 | 3_4:-47282134 | Msa0503740:CDS |
| CACACTAGAGTCTCCTCCAC+CGG | 0.592296 | 3_4:-47281033 | Msa0503740:CDS |
| ACTGGGAAATATATAGCCAA+TGG | 0.596364 | 3_4:+47279978 | None:intergenic |
| TGTAATGAAGATTGCAACCA+TGG | 0.609614 | 3_4:+47280986 | None:intergenic |
| TTCATTGTTTGATTCTCCGG+TGG | 0.612865 | 3_4:+47281017 | None:intergenic |
| CAAATCCAACCACAGTGACA+AGG | 0.616492 | 3_4:+47279874 | None:intergenic |
| ATAGTAATTATATAGGCTTG+GGG | 0.622670 | 3_4:+47282992 | None:intergenic |
| GGCAACACTAGTCCCATACA+AGG | 0.638874 | 3_4:+47281828 | None:intergenic |
| CGTTCACAAAGCCACTGTTG+GGG | 0.646020 | 3_4:+47280159 | None:intergenic |
| AAATAAAATTGCTAGTCCAG+TGG | 0.662970 | 3_4:+47280049 | None:intergenic |
| GGTGGCTGTGGTGAGTACAT+AGG | 0.663546 | 3_4:+47281807 | None:intergenic |
| TCAACGTCGTTATTGTGGGA+CGG | 0.664405 | 3_4:+47281305 | None:intergenic |
| TAGTAATTATATAGGCTTGG+GGG | 0.673303 | 3_4:+47282993 | None:intergenic |
| GTACAAAGTACATTTCAACT+GGG | 0.683822 | 3_4:+47279961 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+GGG | + | chr3_4:47280001-47280020 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | + | chr3_4:47280002-47280021 | None:intergenic | 0.0% |
| !!! | AATTTTACTAAATATATAAC+TGG | + | chr3_4:47279910-47279929 | None:intergenic | 10.0% |
| !! | CACTAAAATTATTAAATAAA+TGG | - | chr3_4:47282140-47282159 | Msa0503740:CDS | 10.0% |
| !!! | ATTATTGTTTTTAATCTATA+TGG | - | chr3_4:47282328-47282347 | Msa0503740:CDS | 10.0% |
| !! | AATAAAGTAAATCATTATTA+AGG | + | chr3_4:47282793-47282812 | None:intergenic | 10.0% |
| !! | TAATAATGATTTACTTTATT+TGG | - | chr3_4:47282793-47282812 | Msa0503740:intron | 10.0% |
| !!! | AATAATGATTTACTTTATTT+GGG | - | chr3_4:47282794-47282813 | Msa0503740:intron | 10.0% |
| !! | TCAATATTAATCAATATGTT+AGG | + | chr3_4:47279794-47279813 | None:intergenic | 15.0% |
| !! | TGTATATGAAAAAAATGAAT+TGG | + | chr3_4:47280315-47280334 | None:intergenic | 15.0% |
| !!! | ATTCATTTTTTTCATATACA+TGG | - | chr3_4:47280315-47280334 | Msa0503740:intron | 15.0% |
| !! | ATTTGAATATGAAATGTTTA+AGG | + | chr3_4:47281456-47281475 | None:intergenic | 15.0% |
| !!! | ATTACTAGTGAATTTTTAAT+TGG | + | chr3_4:47281794-47281813 | None:intergenic | 15.0% |
| !!! | TTTAATAATTTTAGTGAAGT+CGG | + | chr3_4:47282136-47282155 | None:intergenic | 15.0% |
| !!! | ATAATGATTTACTTTATTTG+GGG | - | chr3_4:47282795-47282814 | Msa0503740:intron | 15.0% |
| !!! | ATAGGTATTTAAGATATTTA+AGG | - | chr3_4:47282868-47282887 | Msa0503740:intron | 15.0% |
| !!! | TAGGTATTTAAGATATTTAA+GGG | - | chr3_4:47282869-47282888 | Msa0503740:intron | 15.0% |
| !! | TATAGTAATTATATAGGCTT+GGG | + | chr3_4:47279590-47279609 | None:intergenic | 20.0% |
| !! | TTATAGTAATTATATAGGCT+TGG | + | chr3_4:47279591-47279610 | None:intergenic | 20.0% |
| !! | ATGGCTTATAGTAATTATAT+AGG | + | chr3_4:47279596-47279615 | None:intergenic | 20.0% |
| !! | CTTATCTGCATATAAAATTA+TGG | + | chr3_4:47279615-47279634 | None:intergenic | 20.0% |
| !!! | TATGGACATTTAATAACTTT+TGG | + | chr3_4:47279750-47279769 | None:intergenic | 20.0% |
| !! | ATATTAATCAATATGTTAGG+TGG | + | chr3_4:47279791-47279810 | None:intergenic | 20.0% |
| !! | ATAAACAACAAAGATAAACT+AGG | + | chr3_4:47280104-47280123 | None:intergenic | 20.0% |
| !! | AGAATATGATTCAAATTCAA+TGG | + | chr3_4:47280170-47280189 | None:intergenic | 20.0% |
| !! | TTGAATTTGAATCATATTCT+TGG | - | chr3_4:47280170-47280189 | Msa0503740:CDS | 20.0% |
| !! | ATCATATTCTTGGATAAAAA+TGG | - | chr3_4:47280180-47280199 | Msa0503740:CDS | 20.0% |
| !! | TTCTATAACAATCAGATAAA+AGG | + | chr3_4:47280518-47280537 | None:intergenic | 20.0% |
| !!! | ATTTGAAGTTATAACTGTTA+TGG | + | chr3_4:47280680-47280699 | None:intergenic | 20.0% |
| !! | TAACAGTTATAACTTCAAAT+TGG | - | chr3_4:47280680-47280699 | Msa0503740:intron | 20.0% |
| !! | ATAAATATGTATCATTAGCT+TGG | + | chr3_4:47280977-47280996 | None:intergenic | 20.0% |
| !! | TTTATTGTACTAATGAATAC+AGG | - | chr3_4:47280992-47281011 | Msa0503740:CDS | 20.0% |
| !! | TTATTGTACTAATGAATACA+GGG | - | chr3_4:47280993-47281012 | Msa0503740:CDS | 20.0% |
| !! | ATATGAGGCTAATATATATA+TGG | - | chr3_4:47281068-47281087 | Msa0503740:intron | 20.0% |
| !! | TATTGAATTATATTGAGAAC+AGG | - | chr3_4:47281521-47281540 | Msa0503740:intron | 20.0% |
| !! | ATGAATGATAATACAAACAT+TGG | + | chr3_4:47281733-47281752 | None:intergenic | 20.0% |
| !! | TGTTTGTATTATCATTCATT+TGG | - | chr3_4:47281734-47281753 | Msa0503740:intron | 20.0% |
| !!! | AGTGAATTTTTAATTGGTAA+GGG | + | chr3_4:47281788-47281807 | None:intergenic | 20.0% |
| !!! | TAGTGAATTTTTAATTGGTA+AGG | + | chr3_4:47281789-47281808 | None:intergenic | 20.0% |
| !! | CTTAAGTTATGAGAAATAAA+AGG | + | chr3_4:47281842-47281861 | None:intergenic | 20.0% |
| !!! | CTTTTATTTCTCATAACTTA+AGG | - | chr3_4:47281840-47281859 | Msa0503740:CDS | 20.0% |
| !! | AAAAGATTTATCTCAAAAGA+AGG | + | chr3_4:47282474-47282493 | None:intergenic | 20.0% |
| !!! | TATTTAAGATATTTAAGGGA+TGG | - | chr3_4:47282873-47282892 | Msa0503740:intron | 20.0% |
| !!! | TATCAAACTTCAAATTTTGT+TGG | + | chr3_4:47282967-47282986 | None:intergenic | 20.0% |
| !!! | AATTTGAAGTTTGATATTGA+TGG | - | chr3_4:47282971-47282990 | Msa0503740:five_prime_UTR | 20.0% |
| ! | ATAGTAATTATATAGGCTTG+GGG | + | chr3_4:47279589-47279608 | None:intergenic | 25.0% |
| ! | AGTAAGTAGATGATGAAATA+TGG | + | chr3_4:47279768-47279787 | None:intergenic | 25.0% |
| ! | TATTCTTGGATAAAAATGGA+TGG | - | chr3_4:47280184-47280203 | Msa0503740:CDS | 25.0% |
| ! | ATTCTTGGATAAAAATGGAT+GGG | - | chr3_4:47280185-47280204 | Msa0503740:CDS | 25.0% |
| !!! | TATTGAATATTTGTTTCTGC+AGG | - | chr3_4:47280345-47280364 | Msa0503740:intron | 25.0% |
| !! | TTATAACTTCAAATTGGTTC+AGG | - | chr3_4:47280686-47280705 | Msa0503740:intron | 25.0% |
| !! | AAATTGGTTCAGGTAATAAA+AGG | - | chr3_4:47280696-47280715 | Msa0503740:intron | 25.0% |
| !! | TTCAATTTTTGACCTTGTAT+GGG | - | chr3_4:47280738-47280757 | Msa0503740:intron | 25.0% |
| !! | GACTTATTTCCTTTTCTTTT+AGG | - | chr3_4:47280837-47280856 | Msa0503740:CDS | 25.0% |
| !!! | GCTATTTCTATATAGAACAA+AGG | - | chr3_4:47280902-47280921 | Msa0503740:CDS | 25.0% |
| !!! | AATATATATATGGTGCTGTT+TGG | - | chr3_4:47281078-47281097 | Msa0503740:intron | 25.0% |
| ! | AAGGATAATTGAATATGGAT+AGG | + | chr3_4:47281418-47281437 | None:intergenic | 25.0% |
| ! | TCAAGAAGGATAATTGAATA+TGG | + | chr3_4:47281423-47281442 | None:intergenic | 25.0% |
| !! | TTTTTCATTGTTTGATTCTC+CGG | + | chr3_4:47281567-47281586 | None:intergenic | 25.0% |
| ! | TGTATTATCATTCATTTGGT+TGG | - | chr3_4:47281738-47281757 | Msa0503740:intron | 25.0% |
| !! | ACTTCATTGAAACTTTTGAA+AGG | - | chr3_4:47281956-47281975 | Msa0503740:intron | 25.0% |
| !!! | CTTCATTGAAACTTTTGAAA+GGG | - | chr3_4:47281957-47281976 | Msa0503740:intron | 25.0% |
| ! | CAAATAACAAAACATAGCAT+AGG | + | chr3_4:47282267-47282286 | None:intergenic | 25.0% |
| !!! | CTTTTGAGATAAATCTTTTC+AGG | - | chr3_4:47282475-47282494 | Msa0503740:intron | 25.0% |
| ! | ATCATAAGTGAGAAAATTAG+TGG | - | chr3_4:47282744-47282763 | Msa0503740:intron | 25.0% |
| ! | TTCATGTAATGTAATAGTAG+TGG | - | chr3_4:47282829-47282848 | Msa0503740:intron | 25.0% |
| TAGTAATTATATAGGCTTGG+GGG | + | chr3_4:47279588-47279607 | None:intergenic | 30.0% | |
| TTAATAAAAAGAGCAGCACA+TGG | + | chr3_4:47279887-47279906 | None:intergenic | 30.0% | |
| TGTATACGTTTGGTATGTAT+GGG | + | chr3_4:47279975-47279994 | None:intergenic | 30.0% | |
| ! | TGAAGTTTTCTGCATATGAT+AGG | + | chr3_4:47280140-47280159 | None:intergenic | 30.0% |
| CTTCAAATTACAAAAGCTTC+TGG | - | chr3_4:47280217-47280236 | Msa0503740:intron | 30.0% | |
| AGGTAATAAAAGGACTTATG+TGG | - | chr3_4:47280706-47280725 | Msa0503740:intron | 30.0% | |
| CATACAAGGTCAAAAATTGA+AGG | + | chr3_4:47280739-47280758 | None:intergenic | 30.0% | |
| ! | CTTCAATTTTTGACCTTGTA+TGG | - | chr3_4:47280737-47280756 | Msa0503740:intron | 30.0% |
| CAAATAGAGCCTAAAAGAAA+AGG | + | chr3_4:47280849-47280868 | None:intergenic | 30.0% | |
| ! | CTTTTCTTTTAGGCTCTATT+TGG | - | chr3_4:47280847-47280866 | Msa0503740:CDS | 30.0% |
| ! | AACAGCTTATAACTTGTATG+AGG | + | chr3_4:47280950-47280969 | None:intergenic | 30.0% |
| GAGATCAAATTGTTATCACA+AGG | - | chr3_4:47281023-47281042 | Msa0503740:CDS | 30.0% | |
| TCAAATTGTTATCACAAGGA+AGG | - | chr3_4:47281027-47281046 | Msa0503740:CDS | 30.0% | |
| CAAATTGTTATCACAAGGAA+GGG | - | chr3_4:47281028-47281047 | Msa0503740:CDS | 30.0% | |
| ! | ATATTAGCCTCATATCTACA+AGG | + | chr3_4:47281063-47281082 | None:intergenic | 30.0% |
| TCCTTTACATACTCATTCAT+TGG | - | chr3_4:47281177-47281196 | Msa0503740:CDS | 30.0% | |
| TCCAATGAATGAGTATGTAA+AGG | + | chr3_4:47281181-47281200 | None:intergenic | 30.0% | |
| AATCGCATTATTGCAGAAAA+TGG | - | chr3_4:47281300-47281319 | Msa0503740:CDS | 30.0% | |
| TGCAGAAAATGGAAGAATTA+TGG | - | chr3_4:47281311-47281330 | Msa0503740:CDS | 30.0% | |
| GCAGAAAATGGAAGAATTAT+GGG | - | chr3_4:47281312-47281331 | Msa0503740:CDS | 30.0% | |
| ! | AGAATTATGGGAAGTATAAC+AGG | - | chr3_4:47281324-47281343 | Msa0503740:CDS | 30.0% |
| AATTATCCTTCTTGAGATAC+AGG | - | chr3_4:47281428-47281447 | Msa0503740:CDS | 30.0% | |
| AACAATGAAAAAAGCTTCCA+TGG | - | chr3_4:47281575-47281594 | Msa0503740:intron | 30.0% | |
| ACATTCTTCTATCTATGTTG+TGG | - | chr3_4:47281615-47281634 | Msa0503740:intron | 30.0% | |
| !!! | TTGGATTTTTTGAGCCTTAT+TGG | - | chr3_4:47281694-47281713 | Msa0503740:intron | 30.0% |
| ATTATCATTCATTTGGTTGG+AGG | - | chr3_4:47281741-47281760 | Msa0503740:intron | 30.0% | |
| TTTAATTGGTAAGGGACTAA+GGG | + | chr3_4:47281780-47281799 | None:intergenic | 30.0% | |
| !! | TTTTAATTGGTAAGGGACTA+AGG | + | chr3_4:47281781-47281800 | None:intergenic | 30.0% |
| GTTTCATGAATTTGACATGA+GGG | + | chr3_4:47281878-47281897 | None:intergenic | 30.0% | |
| TGTTTCATGAATTTGACATG+AGG | + | chr3_4:47281879-47281898 | None:intergenic | 30.0% | |
| CAAAAGTTTCAATGAAGTGT+CGG | + | chr3_4:47281954-47281973 | None:intergenic | 30.0% | |
| TAACAAAACATAGCATAGGT+TGG | + | chr3_4:47282263-47282282 | None:intergenic | 30.0% | |
| CTATCAGCTGTACTATATAT+TGG | + | chr3_4:47282381-47282400 | None:intergenic | 30.0% | |
| TATATAGTACAGCTGATAGA+TGG | - | chr3_4:47282382-47282401 | Msa0503740:CDS | 30.0% | |
| ATCTCAAAAGAAGGTAATAG+AGG | + | chr3_4:47282465-47282484 | None:intergenic | 30.0% | |
| AAATAAAATTGCTAGTCCAG+TGG | + | chr3_4:47282532-47282551 | None:intergenic | 30.0% | |
| TATTGGGAGCTATAAATTTC+TGG | - | chr3_4:47282577-47282596 | Msa0503740:intron | 30.0% | |
| GTACAAAGTACATTTCAACT+GGG | + | chr3_4:47282620-47282639 | None:intergenic | 30.0% | |
| TGTACAAAGTACATTTCAAC+TGG | + | chr3_4:47282621-47282640 | None:intergenic | 30.0% | |
| TACTTTGTACAGAAGAAAGT+TGG | - | chr3_4:47282630-47282649 | Msa0503740:intron | 30.0% | |
| !! | CTAGAAAATGGATTGTTCTA+AGG | - | chr3_4:47282661-47282680 | Msa0503740:intron | 30.0% |
| AGTGAGAAAATTAGTGGAAA+AGG | - | chr3_4:47282750-47282769 | Msa0503740:intron | 30.0% | |
| GCAGATAAGAACATTTGCAT+TGG | - | chr3_4:47279626-47279645 | Msa0503740:three_prime_UTR | 35.0% | |
| GCTAAAAACATGTGTCTGTT+TGG | + | chr3_4:47279828-47279847 | None:intergenic | 35.0% | |
| TATGCATATGGCTATGTGAT+TGG | + | chr3_4:47279935-47279954 | None:intergenic | 35.0% | |
| CTGTATACGTTTGGTATGTA+TGG | + | chr3_4:47279976-47279995 | None:intergenic | 35.0% | |
| TATAGGGAACTGTATACGTT+TGG | + | chr3_4:47279985-47280004 | None:intergenic | 35.0% | |
| !! | AGGAAATGTAAAAAGTGCTG+TGG | - | chr3_4:47280365-47280384 | Msa0503740:intron | 35.0% |
| CATATCATCACAGCAGTTAT+TGG | - | chr3_4:47280390-47280409 | Msa0503740:intron | 35.0% | |
| AGAAATCCTGATTCTGTAAC+TGG | - | chr3_4:47280534-47280553 | Msa0503740:intron | 35.0% | |
| GAAATCCTGATTCTGTAACT+GGG | - | chr3_4:47280535-47280554 | Msa0503740:intron | 35.0% | |
| GAAAAGGAACTACTCTTACA+TGG | - | chr3_4:47280557-47280576 | Msa0503740:intron | 35.0% | |
| GATGCTGTTAGAGTTAATCT+TGG | - | chr3_4:47280579-47280598 | Msa0503740:intron | 35.0% | |
| AATAAAAGGACTTATGTGGC+TGG | - | chr3_4:47280710-47280729 | Msa0503740:intron | 35.0% | |
| ATATTCAAGAAGGGTTGAAC+AGG | + | chr3_4:47280813-47280832 | None:intergenic | 35.0% | |
| TGTTCAACCCTTCTTGAATA+TGG | - | chr3_4:47280812-47280831 | Msa0503740:intron | 35.0% | |
| AAGTCGTCCATATTCAAGAA+GGG | + | chr3_4:47280822-47280841 | None:intergenic | 35.0% | |
| TAAGTCGTCCATATTCAAGA+AGG | + | chr3_4:47280823-47280842 | None:intergenic | 35.0% | |
| GATTGTAATGTCGTTCATAC+CGG | - | chr3_4:47281110-47281129 | Msa0503740:intron | 35.0% | |
| ACATACTCATTCATTGGACT+AGG | - | chr3_4:47281183-47281202 | Msa0503740:CDS | 35.0% | |
| AAACTCAACGTCGTTATTGT+GGG | + | chr3_4:47281280-47281299 | None:intergenic | 35.0% | |
| TAAACTCAACGTCGTTATTG+TGG | + | chr3_4:47281281-47281300 | None:intergenic | 35.0% | |
| CTAAAGTTGCTGACAAAATC+TGG | - | chr3_4:47281358-47281377 | Msa0503740:CDS | 35.0% | |
| CAAAATCTGGTTAATCTTCC+AGG | - | chr3_4:47281371-47281390 | Msa0503740:CDS | 35.0% | |
| TGTAATGAAGATTGCAACCA+TGG | + | chr3_4:47281595-47281614 | None:intergenic | 35.0% | |
| TATCTATGTTGTGGTTGCTT+TGG | - | chr3_4:47281624-47281643 | Msa0503740:intron | 35.0% | |
| GCAATGTCAATAAGCCAATA+AGG | + | chr3_4:47281711-47281730 | None:intergenic | 35.0% | |
| AACTTCAGAAGAGACATAGT+TGG | - | chr3_4:47282186-47282205 | Msa0503740:CDS | 35.0% | |
| TCAAAAAAATACCCCAACAG+TGG | - | chr3_4:47282408-47282427 | Msa0503740:five_prime_UTR | 35.0% | |
| ATAGAGGAAGTTTCACTTTG+TGG | + | chr3_4:47282449-47282468 | None:intergenic | 35.0% | |
| !! | AACCAAGTTCTAGGAGTATT+GGG | - | chr3_4:47282561-47282580 | Msa0503740:intron | 35.0% |
| !! | AGCTATAAATTTCTGGCCAT+TGG | - | chr3_4:47282584-47282603 | Msa0503740:intron | 35.0% |
| ACTGGGAAATATATAGCCAA+TGG | + | chr3_4:47282603-47282622 | None:intergenic | 35.0% | |
| !! | GGATTTGTTGGATCATTTGA+AGG | - | chr3_4:47282720-47282739 | Msa0503740:intron | 35.0% |
| ! | CTTTATTTGGGGTTGTACAT+TGG | - | chr3_4:47282806-47282825 | Msa0503740:intron | 35.0% |
| ! | GGTTTTCAGAGTTGTTAGAT+AGG | - | chr3_4:47282850-47282869 | Msa0503740:intron | 35.0% |
| TTGGAACTCACTTCTTTGAA+GGG | + | chr3_4:47282948-47282967 | None:intergenic | 35.0% | |
| GACAGCAGAAAATCAGGAAA+AGG | + | chr3_4:47279666-47279685 | None:intergenic | 40.0% | |
| AGTTGAGACAGCAGAAAATC+AGG | + | chr3_4:47279672-47279691 | None:intergenic | 40.0% | |
| TCTCAACTCTCAAGGAAATC+TGG | - | chr3_4:47279684-47279703 | Msa0503740:three_prime_UTR | 40.0% | |
| CTGACACAAGTCTATGCATA+TGG | + | chr3_4:47279947-47279966 | None:intergenic | 40.0% | |
| ! | TCTGGTGCTTATGATGATGA+TGG | - | chr3_4:47280235-47280254 | Msa0503740:intron | 40.0% |
| GATGGACATGCAAAAAGAAC+TGG | - | chr3_4:47280253-47280272 | Msa0503740:intron | 40.0% | |
| !! | ATCACAGCAGTTATTGGTTC+TGG | - | chr3_4:47280396-47280415 | Msa0503740:intron | 40.0% |
| !!! | TGGTTCTGGTGTTTTGTCAT+TGG | - | chr3_4:47280410-47280429 | Msa0503740:intron | 40.0% |
| ACTGCTCAATTAGGATGGAT+TGG | - | chr3_4:47280441-47280460 | Msa0503740:intron | 40.0% | |
| GCACAACAAAGCAAGAAAAC+TGG | + | chr3_4:47280471-47280490 | None:intergenic | 40.0% | |
| ! | CTTTTCCCAGTTACAGAATC+AGG | + | chr3_4:47280543-47280562 | None:intergenic | 40.0% |
| CTGATTCTGTAACTGGGAAA+AGG | - | chr3_4:47280541-47280560 | Msa0503740:intron | 40.0% | |
| !! | ACAGGAGAAGTACTTCAAAC+TGG | + | chr3_4:47280795-47280814 | None:intergenic | 40.0% |
| CAATGCTCCTTGTAGATATG+AGG | - | chr3_4:47281053-47281072 | Msa0503740:intron | 40.0% | |
| ! | TCATTCATTGGACTAGGACT+TGG | - | chr3_4:47281189-47281208 | Msa0503740:CDS | 40.0% |
| ! | AAGGTACCTGTATCTCAAGA+AGG | + | chr3_4:47281437-47281456 | None:intergenic | 40.0% |
| TTCATTGTTTGATTCTCCGG+TGG | + | chr3_4:47281564-47281583 | None:intergenic | 40.0% | |
| !! | TGCTTTGGATATGCAGCTTT+TGG | - | chr3_4:47281639-47281658 | Msa0503740:intron | 40.0% |
| TCATTTGGTTGGAGGATATC+AGG | - | chr3_4:47281749-47281768 | Msa0503740:intron | 40.0% | |
| GTCAGCATTAGTGTAGTGTA+TGG | - | chr3_4:47282067-47282086 | Msa0503740:CDS | 40.0% | |
| AGCATTAGTGTAGTGTATGG+AGG | - | chr3_4:47282070-47282089 | Msa0503740:CDS | 40.0% | |
| AGCTATGTGATTTCAACCAC+TGG | - | chr3_4:47282513-47282532 | Msa0503740:intron | 40.0% | |
| CCTAGAACTTGGTTGAAGTA+AGG | + | chr3_4:47282555-47282574 | None:intergenic | 40.0% | |
| CCTTACTTCAACCAAGTTCT+AGG | - | chr3_4:47282552-47282571 | Msa0503740:intron | 40.0% | |
| !! | CAACCAAGTTCTAGGAGTAT+TGG | - | chr3_4:47282560-47282579 | Msa0503740:intron | 40.0% |
| TACAGAAGAAAGTTGGAGCT+TGG | - | chr3_4:47282637-47282656 | Msa0503740:intron | 40.0% | |
| ! | TTGGAGCTTGGACTAGAAAA+TGG | - | chr3_4:47282649-47282668 | Msa0503740:intron | 40.0% |
| GTTGGAACTCACTTCTTTGA+AGG | + | chr3_4:47282949-47282968 | None:intergenic | 40.0% | |
| TTCTGCTGTCTCAACTCTCA+AGG | - | chr3_4:47279676-47279695 | Msa0503740:three_prime_UTR | 45.0% | |
| ! | CTGGTGTTTTGTCATTGGCA+TGG | - | chr3_4:47280415-47280434 | Msa0503740:intron | 45.0% |
| !! | GCATGGAGTACTGCTCAATT+AGG | - | chr3_4:47280432-47280451 | Msa0503740:intron | 45.0% |
| !! | GGAGTACTGCTCAATTAGGA+TGG | - | chr3_4:47280436-47280455 | Msa0503740:intron | 45.0% |
| !! | GCTCAATTAGGATGGATTGG+AGG | - | chr3_4:47280444-47280463 | Msa0503740:intron | 45.0% |
| !! | GGAGAAGTACTTCAAACTGG+TGG | + | chr3_4:47280792-47280811 | None:intergenic | 45.0% |
| CATACCGGATCTCCATAACT+TGG | - | chr3_4:47281125-47281144 | Msa0503740:intron | 45.0% | |
| CAAGCCAAGTTATGGAGATC+CGG | + | chr3_4:47281132-47281151 | None:intergenic | 45.0% | |
| GGATCTCCATAACTTGGCTT+GGG | - | chr3_4:47281131-47281150 | Msa0503740:intron | 45.0% | |
| CTGAAACCCAAGCCAAGTTA+TGG | + | chr3_4:47281140-47281159 | None:intergenic | 45.0% | |
| TCAACGTCGTTATTGTGGGA+CGG | + | chr3_4:47281276-47281295 | None:intergenic | 45.0% | |
| TGGTTAATCTTCCAGGCACT+TGG | - | chr3_4:47281378-47281397 | Msa0503740:CDS | 45.0% | |
| AACTAATGTCACCAAGTGCC+TGG | + | chr3_4:47281392-47281411 | None:intergenic | 45.0% | |
| ATTGTTTGATTCTCCGGTGG+AGG | + | chr3_4:47281561-47281580 | None:intergenic | 45.0% | |
| ACACCAGGAAATCTCTTGAC+AGG | - | chr3_4:47281669-47281688 | Msa0503740:intron | 45.0% | |
| CACCAGGAAATCTCTTGACA+GGG | - | chr3_4:47281670-47281689 | Msa0503740:intron | 45.0% | |
| AACCCTGTCAAGAGATTTCC+TGG | + | chr3_4:47281675-47281694 | None:intergenic | 45.0% | |
| GGAAATCTCTTGACAGGGTT+TGG | - | chr3_4:47281675-47281694 | Msa0503740:intron | 45.0% | |
| ! | TGACGTTGTCACTTCAGTGT+CGG | + | chr3_4:47281993-47282012 | None:intergenic | 45.0% |
| TCGTTCACAAAGCCACTGTT+GGG | + | chr3_4:47282423-47282442 | None:intergenic | 45.0% | |
| ATCGTTCACAAAGCCACTGT+TGG | + | chr3_4:47282424-47282443 | None:intergenic | 45.0% | |
| CTCCCAATACTCCTAGAACT+TGG | + | chr3_4:47282566-47282585 | None:intergenic | 45.0% | |
| CAAATCCAACCACAGTGACA+AGG | + | chr3_4:47282707-47282726 | None:intergenic | 45.0% | |
| GTCACTGTGGTTGGATTTGT+TGG | - | chr3_4:47282708-47282727 | Msa0503740:intron | 45.0% | |
| !! | ACTAAAATTATTAAATAAAT+GGG | - | chr3_4:47282141-47282160 | Msa0503740:CDS | 5.0% |
| GGCAACACTAGTCCCATACA+AGG | + | chr3_4:47280753-47280772 | None:intergenic | 50.0% | |
| GTACTTCAAACTGGTGGCTG+TGG | + | chr3_4:47280786-47280805 | None:intergenic | 50.0% | |
| CGGATCTCCATAACTTGGCT+TGG | - | chr3_4:47281130-47281149 | Msa0503740:intron | 50.0% | |
| !! | GCTTTTGGAGATGCTACACC+AGG | - | chr3_4:47281654-47281673 | Msa0503740:intron | 50.0% |
| CGTTCACAAAGCCACTGTTG+GGG | + | chr3_4:47282422-47282441 | None:intergenic | 50.0% | |
| TGCTTGCTTCCTTGTCACTG+TGG | - | chr3_4:47282695-47282714 | Msa0503740:intron | 50.0% | |
| TGCTTCCTTGTCACTGTGGT+TGG | - | chr3_4:47282699-47282718 | Msa0503740:intron | 50.0% | |
| GGTGGCTGTGGTGAGTACAT+AGG | + | chr3_4:47280774-47280793 | None:intergenic | 55.0% | |
| CGTCGTTATTGTGGGACGGA+TGG | + | chr3_4:47281272-47281291 | None:intergenic | 55.0% | |
| CACACTAGAGTCTCCTCCAC+CGG | - | chr3_4:47281545-47281564 | Msa0503740:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 47279577 | 47283023 | 47279577 | ID=Msa0503740;Name=Msa0503740 |
| chr3_4 | mRNA | 47279577 | 47283023 | 47279577 | ID=Msa0503740-mRNA-1;Parent=Msa0503740;Name=Msa0503740-mRNA-1;_AED=0.17;_eAED=0.17;_QI=177|0.71|0.62|1|0.57|0.37|8|247|457 |
| chr3_4 | exon | 47279577 | 47280234 | 47279577 | ID=Msa0503740-mRNA-1:exon:10174;Parent=Msa0503740-mRNA-1 |
| chr3_4 | exon | 47280830 | 47281057 | 47280830 | ID=Msa0503740-mRNA-1:exon:10173;Parent=Msa0503740-mRNA-1 |
| chr3_4 | exon | 47281151 | 47281254 | 47281151 | ID=Msa0503740-mRNA-1:exon:10172;Parent=Msa0503740-mRNA-1 |
| chr3_4 | exon | 47281264 | 47281497 | 47281264 | ID=Msa0503740-mRNA-1:exon:10171;Parent=Msa0503740-mRNA-1 |
| chr3_4 | exon | 47281806 | 47281892 | 47281806 | ID=Msa0503740-mRNA-1:exon:10170;Parent=Msa0503740-mRNA-1 |
| chr3_4 | exon | 47282000 | 47282233 | 47282000 | ID=Msa0503740-mRNA-1:exon:10169;Parent=Msa0503740-mRNA-1 |
| chr3_4 | exon | 47282326 | 47282449 | 47282326 | ID=Msa0503740-mRNA-1:exon:10168;Parent=Msa0503740-mRNA-1 |
| chr3_4 | exon | 47282895 | 47283023 | 47282895 | ID=Msa0503740-mRNA-1:exon:10167;Parent=Msa0503740-mRNA-1 |
| chr3_4 | five_prime_UTR | 47282895 | 47283023 | 47282895 | ID=Msa0503740-mRNA-1:five_prime_utr;Parent=Msa0503740-mRNA-1 |
| chr3_4 | five_prime_UTR | 47282402 | 47282449 | 47282402 | ID=Msa0503740-mRNA-1:five_prime_utr;Parent=Msa0503740-mRNA-1 |
| chr3_4 | CDS | 47282326 | 47282401 | 47282326 | ID=Msa0503740-mRNA-1:cds;Parent=Msa0503740-mRNA-1 |
| chr3_4 | CDS | 47282000 | 47282233 | 47282000 | ID=Msa0503740-mRNA-1:cds;Parent=Msa0503740-mRNA-1 |
| chr3_4 | CDS | 47281806 | 47281892 | 47281806 | ID=Msa0503740-mRNA-1:cds;Parent=Msa0503740-mRNA-1 |
| chr3_4 | CDS | 47281264 | 47281497 | 47281264 | ID=Msa0503740-mRNA-1:cds;Parent=Msa0503740-mRNA-1 |
| chr3_4 | CDS | 47281151 | 47281254 | 47281151 | ID=Msa0503740-mRNA-1:cds;Parent=Msa0503740-mRNA-1 |
| chr3_4 | CDS | 47280830 | 47281057 | 47280830 | ID=Msa0503740-mRNA-1:cds;Parent=Msa0503740-mRNA-1 |
| chr3_4 | CDS | 47279824 | 47280234 | 47279824 | ID=Msa0503740-mRNA-1:cds;Parent=Msa0503740-mRNA-1 |
| chr3_4 | three_prime_UTR | 47279577 | 47279823 | 47279577 | ID=Msa0503740-mRNA-1:three_prime_utr;Parent=Msa0503740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
